Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 77 of 311
Found at i:24078894 original size:25 final size:25
Alignment explanation
Indices: 24078843--24078912 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
24078833 AATTCTGATT
** *
24078843 CTGATTTTGATTCTGGTTCTGTTAC
1 CTGATTTTGATTCTAATTCTGTCAC
*
24078868 CTGATTTTGATTCTAATTTTGTCAC
1 CTGATTTTGATTCTAATTCTGTCAC
* * *
24078893 CTAATTCTGATTCTGATTCT
1 CTGATTTTGATTCTAATTCT
24078913 AATTGTGACT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (25 bp):
CTGATTTTGATTCTAATTCTGTCAC
Found at i:24078911 original size:31 final size:31
Alignment explanation
Indices: 24078806--24078916 Score: 93
Period size: 31 Copynumber: 3.6 Consensus size: 31
24078796 ATTCTGTTAC
* * *
24078806 CTGATACTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTAATTTTGTCACCTAATT
* * * * *
24078837 CTGATTCTGATTTTGATTCTGGT--TCT-GTT
1 CTGATTCTGATTCTAATT-TTGTCACCTAATT
*
24078866 ACCTGATTTTGATTCTAATTTTGTCACCTAATT
1 --CTGATTCTGATTCTAATTTTGTCACCTAATT
24078899 CTGATTCTGATTCTAATT
1 CTGATTCTGATTCTAATT
24078917 GTGACTCTAA
Statistics
Matches: 61, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
29 2 0.03
30 5 0.08
31 48 0.79
32 4 0.07
33 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
CTGATTCTGATTCTAATTTTGTCACCTAATT
Found at i:24082944 original size:42 final size:43
Alignment explanation
Indices: 24082842--24082954 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
24082832 AGCTCATACA
* * * **
24082842 ATGCCGACATCCCAGACATGATCTTACATGCCATCAAATATCG
1 ATGCCGATATCCCAGACATGGTCTTACACGAAATCAAATATCG
* * *
24082885 ATGCC-ACTATCCTAGACAGGGTTTTACACGAAATCAAATAT-G
1 ATGCCGA-TATCCCAGACATGGTCTTACACGAAATCAAATATCG
24082927 ATGCCGATATCCCAGACATGGTCTTACA
1 ATGCCGATATCCCAGACATGGTCTTACA
24082955 TGTAAATAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCGATATCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:24089598 original size:10 final size:10
Alignment explanation
Indices: 24089585--24089622 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
24089575 AAAAGGGATC
24089585 AAAATTAATT
1 AAAATTAATT
24089595 AAAATTAATTAT
1 AAAATTAA-T-T
24089607 AAAATTAATT
1 AAAATTAATT
24089617 AAAATT
1 AAAATT
24089623 CAACGTGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 2 0.08
12 9 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATTAATT
Found at i:24089611 original size:12 final size:12
Alignment explanation
Indices: 24089585--24089617 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
24089575 AAAAGGGATC
24089585 AAAATTAA-T-T
1 AAAATTAATTAT
24089595 AAAATTAATTAT
1 AAAATTAATTAT
24089607 AAAATTAATTA
1 AAAATTAATTA
24089618 AAATTCAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 1 0.05
12 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:24098255 original size:40 final size:40
Alignment explanation
Indices: 24098219--24098405 Score: 250
Period size: 40 Copynumber: 4.7 Consensus size: 40
24098209 TTCTCGCTCG
* *
24098219 AATGCCTTCGGGACATAGCCCGGTTATGGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
* * * *
24098259 AATGCCTTCGGGGCTTAGCCCAGATATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
*
24098299 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
* * * *
24098339 AATGCCTTCGGGGCTTAGCCCGG-AATTAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACA
*
24098379 AATGCCTTTGGGACTTAGCCCGGTTAT
1 AATGCCTTCGGGACTTAGCCCGGTTAT
24098406 CATCCGAATA
Statistics
Matches: 126, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
Found at i:24098334 original size:80 final size:80
Alignment explanation
Indices: 24098211--24098405 Score: 302
Period size: 80 Copynumber: 2.4 Consensus size: 80
24098201 GATATAGCTT
* *
24098211 CTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTAACTCGCACAAATGCCTTCGGGGCTTA
1 CTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGGCTTA
24098276 GCCCAG-ATATAGTAA
66 GCCCAGAAT-TAGTAA
24098291 CTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGGCTTA
1 CTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGGCTTA
* *
24098356 GCCCGGAATTAGTCA
66 GCCCAGAATTAGTAA
* * * *
24098371 CTAGCACAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CTCGCACGAATGCCTTCGGGACATAGCCCGGTTAT
24098406 CATCCGAATA
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 104 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (80 bp):
CTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGGCTTA
GCCCAGAATTAGTAA
Found at i:24106452 original size:78 final size:77
Alignment explanation
Indices: 24106295--24106474 Score: 276
Period size: 78 Copynumber: 2.4 Consensus size: 77
24106285 TACTCGCTCG
*
24106295 AATGCCTTC-GGACATAGCCC-GTTATGGTAACTCGCACAATGCCTTCGGGCTTAGCCCGATATA
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGATATA
* *
24106358 GTAACTCGCACG
66 GTAACTAGCACA
24106370 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGA-AT
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC-AATGCCTTCGGGCTTAGCCCGATA-
*
24106434 TAGTCACTAGCACA
64 TAGTAACTAGCACA
*
24106448 AATGCCTTCGGGACTTAGCCCGGTTAT
1 AATGCCTTCGGGACATAGCCCGGTTAT
24106475 CATCCGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
75 9 0.09
76 11 0.11
77 17 0.18
78 59 0.61
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (77 bp):
AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGATATA
GTAACTAGCACA
Found at i:24106454 original size:38 final size:39
Alignment explanation
Indices: 24106277--24106469 Score: 227
Period size: 38 Copynumber: 5.0 Consensus size: 39
24106267 AATTTAACCG
* * *
24106277 GATATAGCT-ACTCGCTCGAATGCCTTC-GGACATAGCCC
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
24106315 GTTATGGTAACTCGCAC-AATGCCTTCGGG-CTTAGCCC
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
24106352 GATATAGTAACTCGCACGAATGCCTTCGGGACATAGCCC
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
24106391 GGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCC
1 -GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
24106430 GA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
24106469 G
1 G
24106470 GTTATCATCC
Statistics
Matches: 135, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
37 33 0.24
38 51 0.38
39 23 0.17
40 28 0.21
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:24109855 original size:46 final size:46
Alignment explanation
Indices: 24109722--24110035 Score: 183
Period size: 46 Copynumber: 6.7 Consensus size: 46
24109712 TGATATGTGT
* * **
24109722 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTCAC-ATTCTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * * * * *
24109768 GCCAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGATGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
* * *
24109814 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-GA-GA
* * * * * *
24109862 GCTAGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTGTTG-TG-TA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG-AGATGAGA
* * * *
24109907 -TTAGTGTAAGACTTGTCTGGGACACGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACA-TGCATCGGC-CTCG--AGATGAGA
* * * * * *
24109955 GCTAGTGTAAGACCTGTCTAGGACATGTCATCAGCCTCGATATATAAAA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTCG--AGATGAGA
*
24110004 G-TCAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATC
24110036 AACTTTGATG
Statistics
Matches: 206, Mismatches: 46, Indels: 29
0.73 0.16 0.10
Matches are distributed among these distances:
44 26 0.13
45 2 0.01
46 73 0.35
47 3 0.01
48 33 0.16
49 68 0.33
50 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:24109967 original size:49 final size:48
Alignment explanation
Indices: 24109908--24110036 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 48
24109898 TGTTGTGTAT
* * * *
24109908 TAGTGTAAGACTTGTCTGGGACACGGCATC-GACAC-CGATAGATGAGAG
1 TAGTGTAAGACCTGTCTGGGACATGGCATCAG-C-CTCGATAGATAAAAG
* * *
24109956 CTAGTGTAAGACCTGTCTAGGACATGTCATCAGCCTCGATATATAAAAG
1 -TAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATAAAAG
24110005 TCAGTGTAAGACCTGTCTGGGACATGGCATCA
1 T-AGTGTAAGACCTGTCTGGGACATGGCATCA
24110037 ACTTTGATGT
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 65 0.96
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
TAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATAAAAG
Found at i:24110021 original size:142 final size:138
Alignment explanation
Indices: 24109771--24110032 Score: 364
Period size: 142 Copynumber: 1.9 Consensus size: 138
24109761 TCTGAGAGCC
* ** * * *
24109771 AGTGTAAGACATGTCTAGGACATGCATCGACATTGAGATGGGAGCTAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTAGGACAGGCATCGACACCGAGATGAGAGCTAGTGTAAGACATGTCTAGG
* *
24109836 ACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGT
66 ACATGCATCAGCCTCGAGATATAAAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGT
24109901 TGTGTATT
131 TGTGTATT
* * *
24109909 AGTGTAAGACTTGTCTGGGACACGGCATCGACACCGATAGATGAGAGCTAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTAGGACA-GGCATCGACACCG--AGATGAGAGCTAGTGTAAGACATGTCT
*
24109974 AGGACATGTCATCAGCCTCGATATATAAAAG-TCAGTGTAAGACCTGTCTGGGACATGGC
63 AGGACATG-CATCAGCCTCGAGATATAAAAGCT-AGTGTAAGACCTGTCTGGGACATGGC
24110033 ATCAACTTTG
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
138 20 0.19
139 10 0.09
141 32 0.30
142 45 0.42
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (138 bp):
AGTGTAAGACATGTCTAGGACAGGCATCGACACCGAGATGAGAGCTAGTGTAAGACATGTCTAGG
ACATGCATCAGCCTCGAGATATAAAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGT
TGTGTATT
Found at i:24113478 original size:43 final size:43
Alignment explanation
Indices: 24113397--24113479 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
24113387 AAGTCGTACA
* * **
24113397 ATGCCAACGTCCCAGACATGGTCTTACATGTAGTCACATACCG
1 ATGCCAACGTCCCAAACAGGGTCTTACATGTAAACACATACCG
24113440 ATGCC-ACTGTCCCAAACAGGGTCTTAC-TCGTAAACACATA
1 ATGCCAAC-GTCCCAAACAGGGTCTTACAT-GTAAACACATA
24113480 TCGAAATCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 3 0.09
43 31 0.91
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACAGGGTCTTACATGTAAACACATACCG
Found at i:24114348 original size:11 final size:11
Alignment explanation
Indices: 24114332--24114361 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
24114322 CTTAAAACCC
24114332 TTTTATTTTCT
1 TTTTATTTTCT
24114343 TTTTATTTTCT
1 TTTTATTTTCT
24114354 TTTGTATT
1 TTT-TATT
24114362 CGGTAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTATTTTCT
Found at i:24116218 original size:27 final size:26
Alignment explanation
Indices: 24116170--24116221 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
24116160 GCGAGGCTGC
24116170 CAGATATTGTGACGAAGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* * *
24116196 CAGATATATGTGGCGAGGGCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
24116222 TTGCAGCGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:24119922 original size:30 final size:30
Alignment explanation
Indices: 24119886--24119946 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
24119876 TCCTTAACTC
24119886 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
24119916 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
24119946 A
1 A
24119947 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:24122494 original size:109 final size:108
Alignment explanation
Indices: 24122285--24122491 Score: 322
Period size: 109 Copynumber: 2.0 Consensus size: 108
24122275 GAGACTAGCC
* *
24122285 ATATGTATATATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCATTTAT
1 ATATATATACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCA-TTAT
24122350 TTCATTATATCAATAATTCATATACCATAGTTTCCATGTATTAT
65 TTCATTATATCAATAATTCATATACCATAGTTTCCATGTATTAT
24122394 ATATATATACATGTCATGATACATAACATTCTC-TTTTG-TTTC-T-T-AA-ACATATCA-TATT
1 ATATATATACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCATTATT
*
24122452 TCATTATATTAAT-ATTCATATACCATAGTTTCCATGTATT
66 TCATTATATCAATAATTCATATACCATAGTTTCCATGTATT
24122492 CCACATATAT
Statistics
Matches: 95, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
100 27 0.28
101 16 0.17
103 8 0.08
104 2 0.02
105 1 0.01
106 1 0.01
107 4 0.04
108 5 0.05
109 31 0.33
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.46
Consensus pattern (108 bp):
ATATATATACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCATTATT
TCATTATATCAATAATTCATATACCATAGTTTCCATGTATTAT
Found at i:24122500 original size:100 final size:108
Alignment explanation
Indices: 24122290--24122501 Score: 314
Period size: 100 Copynumber: 2.0 Consensus size: 108
24122280 TAGCCATATG
*
24122290 TATATATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCATTTATTTCAT
1 TATACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCA-TTATTTCAT
* *
24122355 TATATCAATAATTCATATACCATAGTTTCCATGTATTATATATA
65 TATATCAATAATTCATATACCATAGTTTCCATGTATTACACATA
24122399 TATACATGTCATGATACATAACATTCTC-TTTTG-TTTC-T-T-AA-ACATATCA-TATTTCATT
1 TATACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCATTATTTCATT
* *
24122457 ATATTAAT-ATTCATATACCATAGTTTCCATGTATTCCACATA
66 ATATCAATAATTCATATACCATAGTTTCCATGTATTACACATA
24122499 TAT
1 TAT
24122502 TTATTTCTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
100 34 0.35
101 16 0.16
103 8 0.08
104 2 0.02
105 1 0.01
106 1 0.01
107 4 0.04
108 5 0.05
109 27 0.28
ACGTcount: A:0.33, C:0.16, G:0.05, T:0.46
Consensus pattern (108 bp):
TATACATGTCATGATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATCATTATTTCATT
ATATCAATAATTCATATACCATAGTTTCCATGTATTACACATA
Found at i:24130376 original size:49 final size:49
Alignment explanation
Indices: 24130286--24130398 Score: 115
Period size: 49 Copynumber: 2.3 Consensus size: 49
24130276 CTTGTTCTAT
* * * * *
24130286 GTCAGTGTAAGACCTGTCGTGGACATGGCATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTATCGTGGACATGACATAGACACCGATAGATAAAA
* *
24130335 G-CTAGTGTAAGACCTATC-TGGGACATGACATTAG-CATCGATATATAAAA
1 GTC-AGTGTAAGACCTATCGT-GGACATGACA-TAGACACCGATAGATAAAA
24130384 GTCAGTGTAAGACCT
1 GTCAGTGTAAGACCT
24130399 GTCTAGAACA
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
48 2 0.04
49 48 0.91
50 3 0.06
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCTATCGTGGACATGACATAGACACCGATAGATAAAA
Found at i:24135706 original size:28 final size:29
Alignment explanation
Indices: 24135674--24135787 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
24135664 ACCTGTATCA
*
24135674 GGCCCATTAAGCCC-AATCATATTCATAT
1 GGCCCATTAAGCCCAAATCACATTCATAT
*
24135702 GGCCCATT-AGACCCAAATCACCTGT-ATAT
1 GGCCCATTAAG-CCCAAATCACAT-TCATAT
* *
24135731 GGCCCATTAGGCCCAAATCACATTTATAT
1 GGCCCATTAAGCCCAAATCACATTCATAT
* *
24135760 GGCCCATTAGGCCC-AGTCACATTCATAT
1 GGCCCATTAAGCCCAAATCACATTCATAT
24135788 TCATGTTCAA
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.03
28 24 0.32
29 47 0.63
30 2 0.03
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
GGCCCATTAAGCCCAAATCACATTCATAT
Found at i:24135730 original size:29 final size:29
Alignment explanation
Indices: 24135674--24135774 Score: 134
Period size: 29 Copynumber: 3.5 Consensus size: 29
24135664 ACCTGTATCA
* *
24135674 GGCCCATTAAGCCC-AATCATAT-TCATAT
1 GGCCCATTAGGCCCAAATCACATGT-ATAT
* *
24135702 GGCCCATTAGACCCAAATCACCTGTATAT
1 GGCCCATTAGGCCCAAATCACATGTATAT
*
24135731 GGCCCATTAGGCCCAAATCACATTTATAT
1 GGCCCATTAGGCCCAAATCACATGTATAT
24135760 GGCCCATTAGGCCCA
1 GGCCCATTAGGCCCA
24135775 GTCACATTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
28 12 0.19
29 51 0.80
30 1 0.02
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
GGCCCATTAGGCCCAAATCACATGTATAT
Found at i:24139654 original size:46 final size:46
Alignment explanation
Indices: 24139537--24139654 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 46
24139527 TGTCTTCGAC
** *
24139537 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAATGCCATATATATAAT
* * *
24139583 ATGGGCTTACATGGCTCAGTCCTGTCTCCAAAT-CCATATA-ACTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCC-AATGCCATATATA-TAAT
*
24139629 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
24139655 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
45 1 0.02
46 57 0.93
47 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAATGCCATATATATAAT
Found at i:24143959 original size:46 final size:48
Alignment explanation
Indices: 24143852--24143974 Score: 160
Period size: 48 Copynumber: 2.6 Consensus size: 48
24143842 CCATGTCTTC
** * *
24143852 GATATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAT
1 GATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAT
* * *
24143900 AATATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CT
1 GATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAT
*
24143946 GATATGGACTTACATGGCTCATTTCTGTC
1 GATATGGACTTACATGGCTCATTCCTGTC
24143975 CTGTCCTGTC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 27 0.42
47 1 0.02
48 37 0.57
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (48 bp):
GATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAT
Found at i:24144344 original size:30 final size:31
Alignment explanation
Indices: 24144310--24144369 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
24144300 TCCTTGACCC
* *
24144310 AAACTTTGACAAAATT-ACATTTTTGCCCCT
1 AAACTTTCACAAAATTGACACTTTTGCCCCT
* *
24144340 AAACTTTCACATATTTGACACTTTTGCCCC
1 AAACTTTCACAAAATTGACACTTTTGCCCC
24144370 AAGGCTCGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (31 bp):
AAACTTTCACAAAATTGACACTTTTGCCCCT
Found at i:24146429 original size:29 final size:28
Alignment explanation
Indices: 24146374--24146488 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
24146364 GTGAACATGA
*
24146374 ATATAAATGTGACTGGGCCTAAAGGGCC
1 ATATAAATGTGATTGGGCCTAAAGGGCC
*
24146402 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAAAGGGCC
* *
24146431 ATATACATGTGATTTGGGTCTAAAGGGCC
1 ATATAAATGTGA-TTGGGCCTAAAGGGCC
* * * *
24146460 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAAAGGGCC
24146488 A
1 A
24146489 GATATAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAAAGGGCC
Found at i:24146483 original size:57 final size:57
Alignment explanation
Indices: 24146374--24146488 Score: 160
Period size: 57 Copynumber: 2.0 Consensus size: 57
24146364 GTGAACATGA
*
24146374 ATATAAATGTGACTGGGCCTAAAGGGCCATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGACTGGGCCTAAAGGGCCATATAAATATGATTTGGGCCTAATGGGCC
* * * * *
24146431 ATATACATGTGATTTGGGTCTAAAGGGCCATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGA-CTGGGCCTAAAGGGCCATATAAATATGATTTGGGCCTAATGGGCC
24146488 A
1 A
24146489 GATATAGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 27 0.53
58 24 0.47
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (57 bp):
ATATAAATGTGACTGGGCCTAAAGGGCCATATAAATATGATTTGGGCCTAATGGGCC
Found at i:24157584 original size:37 final size:37
Alignment explanation
Indices: 24157534--24157612 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24157524 TTATTACGAA
* *
24157534 GTCTTACCCGGACATAATCTCC-ACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATC-CCTACACGAAGTCATCGG
*
24157571 GTCTTACCCGGACAAAATCCCTACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCTACACGAAGTCATCGG
24157608 GTCTT
1 GTCTT
24157613 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCTACACGAAGTCATCGG
Found at i:24157948 original size:47 final size:47
Alignment explanation
Indices: 24157731--24158249 Score: 826
Period size: 47 Copynumber: 11.1 Consensus size: 47
24157721 CCCTTCGGGA
* * * * * * *
24157731 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24157778 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24157824 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24157871 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24157917 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24157964 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24158011 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24158058 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24158105 CTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24158152 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24158199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24158246 CTTA
1 CTTA
24158250 CTATCATTTC
Statistics
Matches: 445, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 85 0.19
47 360 0.81
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24160088 original size:13 final size:13
Alignment explanation
Indices: 24160070--24160094 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24160060 ATGAACACCC
24160070 TTTCTTTTCTTTT
1 TTTCTTTTCTTTT
24160083 TTTCTTTTCTTT
1 TTTCTTTTCTTT
24160095 GTCTAGTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTCTTTTCTTTT
Found at i:24170677 original size:47 final size:46
Alignment explanation
Indices: 24170603--24170727 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 46
24170593 ATATTTGAGT
* * *
24170603 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGT-AACTAGGC
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTGAGGATGTGAAC---GC
*
24170649 ATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGC
1 -TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTGA-GGATGTGAACGC
24170697 -CCGAGCTCGTTGAGTTGAGTCTGAGTTCACT
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACT
24170728 TATGGGTGAG
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
46 31 0.44
47 27 0.39
48 4 0.06
50 5 0.07
51 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTGAGGATGTGAACGC
Found at i:24182101 original size:13 final size:13
Alignment explanation
Indices: 24182091--24182116 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24182081 GGACACGCTT
24182091 GTGTAACACGCCC
1 GTGTAACACGCCC
24182104 GTGTAACACGCCC
1 GTGTAACACGCCC
24182117 ATGTGTGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (13 bp):
GTGTAACACGCCC
Found at i:24186435 original size:30 final size:31
Alignment explanation
Indices: 24186362--24186437 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
24186352 CGACATATAT
*
24186362 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAA
24186393 TGGGCCGAAGCCTTTTCATAAATCATATCAA
1 TGGGCCGAAGCCTTTTCATAAATCATATCAA
*
24186424 T-GGCTGAAGCCTTT
1 TGGGCCGAAGCCTTT
24186438 ACTGTAAGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
30 12 0.28
31 31 0.72
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAA
Found at i:24186684 original size:25 final size:24
Alignment explanation
Indices: 24186656--24186724 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
24186646 CTCTTTTAAT
*
24186656 AACTGGGGCAAAGCCCTTTTTGATA
1 AACT-GGGCAAAGCCCTTTTCGATA
*
24186681 AACTGGGCAAAGCCCTTTTCGGTA
1 AACTGGGCAAAGCCCTTTTCGATA
*
24186705 AACTAGGGCATAGCCCTTTT
1 AACT-GGGCAAAGCCCTTTT
24186725 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 22 0.55
25 18 0.45
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AACTGGGCAAAGCCCTTTTCGATA
Found at i:24187596 original size:27 final size:27
Alignment explanation
Indices: 24187534--24187599 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
24187524 GGGCATATTC
*
24187534 GTCATTTTACCATACAGGGATATTACG
1 GTCATTTTACCTTACAGGGATATTACG
* *
24187561 GTCACTTTACCTTACAAGGGCT-TTACG
1 GTCATTTTACCTTAC-AGGGATATTACG
*
24187588 GTCTTTTTACCT
1 GTCATTTTACCT
24187600 ATTAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 28 0.85
28 5 0.15
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGATATTACG
Found at i:24187667 original size:27 final size:27
Alignment explanation
Indices: 24187637--24187840 Score: 160
Period size: 27 Copynumber: 7.5 Consensus size: 27
24187627 TACAATGGTG
*
24187637 TTTTGGTAAATTTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
** * * *
24187664 TTTTTATAATTTTTAAAAAGTCAAGGCTA
1 TTTTGGTAA-TTTTACAAA-CCAAGGGTA
** * *
24187693 TTTCT-GTAATTTTGTAAATCAGGGGTA
1 TTT-TGGTAATTTTACAAACCAAGGGTA
* ***
24187720 TTTTGGTAATTTTACGAATTGAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
* * *
24187747 TTTCGGTAATTTCACAAA-CTAGTGGTA
1 TTTTGGTAATTTTACAAACCAAG-GGTA
* *
24187774 TTTTGGTAATTTTACAAACTAGGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
**
24187801 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
*
24187828 TTTTAGTAATTTT
1 TTTTGGTAATTTT
24187841 GTAAATTGAG
Statistics
Matches: 139, Mismatches: 32, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.02
27 107 0.77
28 15 0.11
29 13 0.09
30 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACCAAGGGTA
Found at i:24187852 original size:27 final size:27
Alignment explanation
Indices: 24187698--24188007 Score: 167
Period size: 27 Copynumber: 11.5 Consensus size: 27
24187688 GGCTATTTCT
*
24187698 GTAATTTTGTAAA-TCAGGGGTATTTTG
1 GTAATTTTGTAAATTGA-GGGTATTTTG
*** *
24187725 GTAATTTTACGAATTGAGGGTATTTCG
1 GTAATTTTGTAAATTGAGGGTATTTTG
*** *
24187752 GTAATTTCACAAACT-AGTGGTATTTTG
1 GTAATTTTGTAAATTGAG-GGTATTTTG
** *
24187779 GTAATTTTACAAACT-AGGGGTATTTTG
1 GTAATTTTGTAAATTGA-GGGTATTTTG
*** *
24187806 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTTTGTAAATTGAGGGTATTTTG
***
24187833 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATTGAGGGTATTTTG
* ****
24187860 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTTTGTAAATTGAGGGTATTTTG
* * ****
24187887 ATAATTTGGTAAATTGAGGGTAAAACG
1 GTAATTTTGTAAATTGAGGGTATTTTG
* *****
24187914 GTAATTCTGTAAATTGAGGGTAAAACA
1 GTAATTTTGTAAATTGAGGGTATTTTG
* **
24187941 GTAATTTTGTAAATCGAGGGTACGTTG
1 GTAATTTTGTAAATTGAGGGTATTTTG
** ** *
24187968 GTAATTTTACAAATTGAGGACATTTTA
1 GTAATTTTGTAAATTGAGGGTATTTTG
*
24187995 GTAATTTAGTAAA
1 GTAATTTTGTAAA
24188008 CTAAAGTATT
Statistics
Matches: 231, Mismatches: 48, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 225 0.97
28 4 0.02
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (27 bp):
GTAATTTTGTAAATTGAGGGTATTTTG
Found at i:24187854 original size:54 final size:54
Alignment explanation
Indices: 24187637--24187872 Score: 174
Period size: 54 Copynumber: 4.3 Consensus size: 54
24187627 TACAATGGTG
* ** * ** *
24187637 TTTTGGTAAATTTACAAACCAAGGGTATTTTTA-TAATTTTTAAAAAGTCAAGGCTA
1 TTTTGGTAATTTTGTAAACCAAGGGTA-TTTTAGTAA-TTTTACAAA-TTGAGGGTA
* * * *
24187693 TTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACGAATTGAGGGTA
1 TTT-TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAATTGAGGGTA
* *** * * *
24187747 TTTCGGTAATTTCACAAA-CTAGTGGTATTTTGGTAATTTTACAAACT-AGGGGTA
1 TTTTGGTAATTTTGTAAACCAAG-GGTATTTTAGTAATTTTACAAATTGA-GGGTA
**
24187801 TTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTA
1 TTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAATTGAGGGTA
*** *
24187855 AAATGGTAATTCTGTAAA
1 TTTTGGTAATTTTGTAAA
24187873 TTGAGGGTAA
Statistics
Matches: 141, Mismatches: 32, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
53 3 0.02
54 99 0.70
55 15 0.11
56 23 0.16
57 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
TTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAATTGAGGGTA
Found at i:24187892 original size:81 final size:81
Alignment explanation
Indices: 24187807--24187962 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 81
24187797 GGTATTTTGG
* **** * **
24187807 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTGTAA
1 TAATTTGGTAAACCAAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAA
*
24187872 ATTGAGGGTAAAACGA
66 ATCGAGGGTAAAACGA
*** * *
24187888 TAATTTGGTAAATTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTTTGTAA
1 TAATTTGGTAAACCAAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAA
24187953 ATCGAGGGTA
66 ATCGAGGGTA
24187963 CGTTGGTAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (81 bp):
TAATTTGGTAAACCAAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAACGA
Found at i:24188193 original size:17 final size:17
Alignment explanation
Indices: 24188171--24188215 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
24188161 ACAAACTTAT
24188171 CCATTGGGCCCGTAGGC
1 CCATTGGGCCCGTAGGC
24188188 CCATTGGGCCCGTAGGC
1 CCATTGGGCCCGTAGGC
24188205 CCATTGGGCCC
1 CCATTGGGCCC
24188216 ACATGGCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.11, C:0.38, G:0.33, T:0.18
Consensus pattern (17 bp):
CCATTGGGCCCGTAGGC
Found at i:24190869 original size:49 final size:49
Alignment explanation
Indices: 24190790--24190966 Score: 185
Period size: 49 Copynumber: 3.6 Consensus size: 49
24190780 TCTATTGTGA
* *
24190790 GGTCACATGTCTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
* * * * * **
24190839 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGTATA-TCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GGATAATT
* * *
24190888 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
** * *
24190938 GGTTGCATGTGTAATATTAAGTGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
24190967 CCTATGCGTA
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 62 0.61
50 38 0.38
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
Found at i:24190960 original size:99 final size:99
Alignment explanation
Indices: 24190789--24190972 Score: 278
Period size: 99 Copynumber: 1.9 Consensus size: 99
24190779 ATCTATTGTG
* * * *
24190789 AGGTCACATGTCTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTCTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAAT
24190854 ACTAAGTGCAAGCTACTATGTATATCAGATGGTT
66 ACTAAGTGCAAGCTACTATGTATATCAGATGGTT
* * *
24190888 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTTGCATGTGTAAT
1 AGGTCACATGTCTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAAT
* * *
24190953 ATTAAGTGCAGGCTCCTATG
66 ACTAAGTGCAAGCTACTATG
24190973 CGTACCAGAT
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 75 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (99 bp):
AGGTCACATGTCTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAAT
ACTAAGTGCAAGCTACTATGTATATCAGATGGTT
Found at i:24194360 original size:28 final size:28
Alignment explanation
Indices: 24194320--24194384 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
24194310 ATGTACTAGA
*
24194320 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
24194348 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
24194376 ATACCCCTA
1 ATACCCCTA
24194385 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:24194533 original size:28 final size:28
Alignment explanation
Indices: 24194502--24194572 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
24194492 GGTGGCTATG
24194502 CCACAAATTATCTGTTCTAGTGGCCCTA
1 CCACAAATTATCTGTTCTAGTGGCCCTA
* * *
24194530 CCACAAATTATCTGTTCTGGTGGCGCTG
1 CCACAAATTATCTGTTCTAGTGGCCCTA
*
24194558 CCACAAAATATCTGT
1 CCACAAATTATCTGT
24194573 ATTTGGTGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (28 bp):
CCACAAATTATCTGTTCTAGTGGCCCTA
Found at i:24194591 original size:29 final size:28
Alignment explanation
Indices: 24194500--24194591 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
24194490 CTGGTGGCTA
* * * *
24194500 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACGC
* * *
24194528 TACCACAAATTATCTGTTCTGGTGGCGC
1 TGCCACAAAATATCTGTTCTGGTGACGC
* *
24194556 TGCCACAAAATATCTGTATTTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACGC
*
24194585 TGTCACA
1 TGCCACA
24194592 TTTTCTGTAT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 40 0.74
29 14 0.26
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACGC
Found at i:24195688 original size:11 final size:10
Alignment explanation
Indices: 24195660--24195693 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
24195650 AGCCTATAAG
24195660 TATTCTGAAT
1 TATTCTGAAT
*
24195670 TTTTCTGAAT
1 TATTCTGAAT
24195680 ATATTCTGAAT
1 -TATTCTGAAT
24195691 TAT
1 TAT
24195694 CTGTCTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:24195938 original size:12 final size:12
Alignment explanation
Indices: 24195921--24195949 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
24195911 GCTCGAGGTA
24195921 GAGGCCGTGGAC
1 GAGGCCGTGGAC
24195933 GAGGCCGTGGAC
1 GAGGCCGTGGAC
24195945 GAGGC
1 GAGGC
24195950 TGAGGAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.24, G:0.52, T:0.07
Consensus pattern (12 bp):
GAGGCCGTGGAC
Found at i:24201907 original size:8 final size:8
Alignment explanation
Indices: 24201894--24201925 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
24201884 CTAGATCGGC
24201894 AAAAGCCG
1 AAAAGCCG
24201902 AAAAGCCG
1 AAAAGCCG
*
24201910 AAATGCCG
1 AAAAGCCG
24201918 AAAAGCCG
1 AAAAGCCG
24201926 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:24202212 original size:28 final size:28
Alignment explanation
Indices: 24202172--24202236 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
24202162 ATGTACTAGA
*
24202172 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
24202200 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
24202228 ATACCCCTA
1 ATACCCCTA
24202237 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:24202383 original size:28 final size:29
Alignment explanation
Indices: 24202342--24202405 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 29
24202332 AGGAAGGGTC
24202342 CTGGTGG-CTATGCCACAAATTATCTGTT
1 CTGGTGGCCTATGCCACAAATTATCTGTT
24202370 CTGGTGGCCT-TGCCACAAATTATCTGTT
1 CTGGTGGCCTATGCCACAAATTATCTGTT
24202398 CTGGTGGC
1 CTGGTGGC
24202406 GCTACTATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.34
Consensus pattern (29 bp):
CTGGTGGCCTATGCCACAAATTATCTGTT
Found at i:24202421 original size:28 final size:28
Alignment explanation
Indices: 24202354--24202432 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
24202344 GGTGGCTATG
* *
24202354 CCACAAATTATCTGTTCTGGTGGCCTTG
1 CCACAAAATATCTGTTCTGGTGGCCTTA
*
24202382 CCACAAATTATCTGTTCTGGTGGCGC-TA
1 CCACAAAATATCTGTTCTGGTGGC-CTTA
* * *
24202410 CTATAAAATATCTATATCTGGTG
1 CCACAAAATATCTGT-TCTGGTG
24202433 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 36 0.82
29 8 0.18
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGGCCTTA
Found at i:24225842 original size:14 final size:13
Alignment explanation
Indices: 24225819--24225850 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
24225809 GGGAAATCAA
24225819 AACAATAATTAAG
1 AACAATAATTAAG
24225832 AACACATAATTAAG
1 AACA-ATAATTAAG
24225846 AACAA
1 AACAA
24225851 GTTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:24239206 original size:16 final size:16
Alignment explanation
Indices: 24239187--24239226 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
24239177 AGCCAAAATG
24239187 CTGAAAAGTCGAAAAC
1 CTGAAAAGTCGAAAAC
* *
24239203 CTGAAATGTCGAAAAG
1 CTGAAAAGTCGAAAAC
24239219 CT-AAAAGT
1 CTGAAAAGT
24239227 TGGGCTACGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.17
Consensus pattern (16 bp):
CTGAAAAGTCGAAAAC
Found at i:24239346 original size:10 final size:9
Alignment explanation
Indices: 24239327--24239366 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
24239317 GTTGAGAATT
24239327 GGCCAAATG
1 GGCCAAATG
24239336 GGCCGAAATG
1 GGCC-AAATG
*
24239346 GGCTAAATG
1 GGCCAAATG
*
24239355 GGCCTAATG
1 GGCCAAATG
24239364 GGC
1 GGC
24239367 TATTGGGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.28, C:0.20, G:0.38, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:24239480 original size:29 final size:28
Alignment explanation
Indices: 24239448--24239554 Score: 101
Period size: 29 Copynumber: 3.8 Consensus size: 28
24239438 ATAATATGAT
*
24239448 TTGGGCCTAATTGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* *
24239477 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* * *
24239506 CTGGGCC-AGATGGGTCATTTGAATA-AGA
1 TTGGGCCTA-ATGGGCCATATGAATAGA-A
*
24239534 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
24239555 CATGGATGTA
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
27 1 0.02
28 18 0.29
29 43 0.69
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:24243677 original size:16 final size:16
Alignment explanation
Indices: 24243656--24243707 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
24243646 GCAAAAGTTT
24243656 AAAGCCAAAATGCTGA
1 AAAGCCAAAATGCTGA
24243672 AAAGCCGAAAA-GCTGA
1 AAAGCC-AAAATGCTGA
* * *
24243688 AATGCCGAAATGCCGA
1 AAAGCCAAAATGCTGA
24243704 AAAG
1 AAAG
24243708 TTGAAAGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 3 0.10
16 23 0.77
17 4 0.13
ACGTcount: A:0.48, C:0.19, G:0.23, T:0.10
Consensus pattern (16 bp):
AAAGCCAAAATGCTGA
Found at i:24243683 original size:8 final size:8
Alignment explanation
Indices: 24243656--24243707 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
24243646 GCAAAAGTTT
24243656 AAAGCC-A
1 AAAGCCGA
*
24243663 AAATGCTGA
1 AAA-GCCGA
24243672 AAAGCCGA
1 AAAGCCGA
*
24243680 AAAGCTGA
1 AAAGCCGA
*
24243688 AATGCCGA
1 AAAGCCGA
*
24243696 AATGCCGA
1 AAAGCCGA
24243704 AAAG
1 AAAG
24243708 TTGAAAGTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
7 3 0.08
8 30 0.81
9 4 0.11
ACGTcount: A:0.48, C:0.19, G:0.23, T:0.10
Consensus pattern (8 bp):
AAAGCCGA
Found at i:24243684 original size:24 final size:24
Alignment explanation
Indices: 24243656--24243707 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
24243646 GCAAAAGTTT
*
24243656 AAAGCCAAAATGCTGAAAAGCCGA
1 AAAGCCAAAATGCCGAAAAGCCGA
** *
24243680 AAAGCTGAAATGCCGAAATGCCGA
1 AAAGCCAAAATGCCGAAAAGCCGA
24243704 AAAG
1 AAAG
24243708 TTGAAAGTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.19, G:0.23, T:0.10
Consensus pattern (24 bp):
AAAGCCAAAATGCCGAAAAGCCGA
Found at i:24243712 original size:24 final size:24
Alignment explanation
Indices: 24243663--24243713 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
24243653 TTTAAAGCCA
*
24243663 AAATGCTGAAAAGCCGAAAAGCTG
1 AAATGCCGAAAAGCCGAAAAGCTG
* *
24243687 AAATGCCGAAATGCCGAAAAGTTG
1 AAATGCCGAAAAGCCGAAAAGCTG
24243711 AAA
1 AAA
24243714 GTTGGGCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.24, T:0.14
Consensus pattern (24 bp):
AAATGCCGAAAAGCCGAAAAGCTG
Found at i:24243855 original size:18 final size:19
Alignment explanation
Indices: 24243822--24243857 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24243812 AATTGGCCAA
24243822 ATGGGCCGAAATGGGCTAG
1 ATGGGCCGAAATGGGCTAG
*
24243841 ATGGGCCG-GATGGGCTA
1 ATGGGCCGAAATGGGCTA
24243858 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.17, G:0.44, T:0.17
Consensus pattern (19 bp):
ATGGGCCGAAATGGGCTAG
Found at i:24243972 original size:29 final size:28
Alignment explanation
Indices: 24243940--24244043 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 28
24243930 ATATGATTTA
*
24243940 GGCCTAATTGGCCATATGAATGAGAATTG
1 GGCCTAATGGGCCATATGAAT-AGAATTG
* *
24243969 GGCCTAGTGGGCCATAAGAATATGAATTG
1 GGCCTAATGGGCCATATGAATA-GAATTG
*
24243998 GG-CTAGATGGGTCAT-TCGAATA-AGATTG
1 GGCCTA-ATGGGCCATAT-GAATAGA-ATTG
*
24244026 GGCCTAGTGGGCCATATG
1 GGCCTAATGGGCCATATG
24244044 CATGGATGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
27 1 0.02
28 18 0.30
29 42 0.69
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGAATAGAATTG
Found at i:24243992 original size:58 final size:57
Alignment explanation
Indices: 24243929--24244041 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 57
24243919 GCATGAATAT
* * *
24243929 AATATGATTTAGGCCTA-ATTGGCCATAT-GAATGAGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATT-GGCCTAGATGGGCCAT-TCGAATAAG-ATTGGGCCTAGTGGGCCATAAG
* *
24243987 AATATGAATTGGGCTAGATGGGTCATTCGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGCCTAGATGGGCCATTCGAATAAGATTGGGCCTAGTGGGCCATA
24244042 TGCATGGATG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
57 26 0.54
58 22 0.46
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (57 bp):
AATATGAATTGGCCTAGATGGGCCATTCGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:24246582 original size:45 final size:45
Alignment explanation
Indices: 24246518--24246606 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
24246508 CACTCCAATG
* *
24246518 TGGATGAAGCCATCAATATTCGTAGACAAGTTTCCATGTAGGTTA
1 TGGATGAAGCCATCAATATTCGTAGACAAGCTGCCATGTAGGTTA
24246563 TGGATGAAGCCA-CAAATATTCGTAGACAAGCTGCCATGTAGGTT
1 TGGATGAAGCCATC-AATATTCGTAGACAAGCTGCCATGTAGGTT
24246607 GTAGACAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
TGGATGAAGCCATCAATATTCGTAGACAAGCTGCCATGTAGGTTA
Found at i:24246610 original size:23 final size:23
Alignment explanation
Indices: 24246584--24246646 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 23
24246574 ACAAATATTC
**
24246584 GTAGACAAGCTGCCATGTAGGTT
1 GTAGACAAGCCACCATGTAGGTT
24246607 GTAGACAAAGCCACCATGTAGGTT
1 GTAGAC-AAGCCACCATGTAGGTT
*
24246631 GTGGACAAAGCCACCA
1 GTAGAC-AAGCCACCA
24246647 ATTCTTCCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 6 0.17
24 30 0.83
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (23 bp):
GTAGACAAGCCACCATGTAGGTT
Found at i:24246617 original size:24 final size:24
Alignment explanation
Indices: 24246596--24246646 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
24246586 AGACAAGCTG
24246596 CCATGTAGGTTGTAGACAAAGCCA
1 CCATGTAGGTTGTAGACAAAGCCA
*
24246620 CCATGTAGGTTGTGGACAAAGCCA
1 CCATGTAGGTTGTAGACAAAGCCA
24246644 CCA
1 CCA
24246647 ATTCTTCCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (24 bp):
CCATGTAGGTTGTAGACAAAGCCA
Found at i:24246618 original size:45 final size:44
Alignment explanation
Indices: 24246524--24246620 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 44
24246514 AATGTGGATG
* * * **
24246524 AAGCCATCAATATTCGTAGACAAGTTTCCATGTAGGTTATGGATG
1 AAGCCA-CAATATTCGTAGACAAGCTGCCATGTAGGTTATAGACA
*
24246569 AAGCCACAAATATTCGTAGACAAGCTGCCATGTAGGTTGTAGACA
1 AAGCCAC-AATATTCGTAGACAAGCTGCCATGTAGGTTATAGACA
24246614 AAGCCAC
1 AAGCCAC
24246621 CATGTAGGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (44 bp):
AAGCCACAATATTCGTAGACAAGCTGCCATGTAGGTTATAGACA
Found at i:24250463 original size:27 final size:27
Alignment explanation
Indices: 24250423--24250572 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
24250413 ACACAGGGGT
* *
24250423 AAAACAGTCTTTTTACCCCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
24250450 AAAAC-GCTCATTTTACCTCATAAGGGC
1 AAAACAG-TCATTTTACCTCATAAGGGC
*
24250477 AAAACAGTCATTTTA-CTCCATAAGGGT
1 AAAACAGTCATTTTACCT-CATAAGGGC
*
24250504 AAAACAGTCATTTTACCTCATAAGGGT
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
24250531 AAAACAGTAATTTTACCTTATAAGCGC
1 AAAACAGTCATTTTACCTCATAAGGGC
24250558 AAAACAGTCATTTTA
1 AAAACAGTCATTTTA
24250573 TCAATTAAGG
Statistics
Matches: 111, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
26 3 0.03
27 105 0.95
28 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:24250554 original size:81 final size:81
Alignment explanation
Indices: 24250419--24250572 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 81
24250409 CATCACACAG
* * *
24250419 GGGTAAAACAGTCTTTTTACCCCATAAGGGCAAAACGCTCATTTTACCTCATAAGGGCAAAACAG
1 GGGTAAAACAGTCATTTTACCCCATAAGGGCAAAACGCTAATTTTACCTCATAAGCGCAAAACAG
24250484 TCATTTTACTCCATAA
66 TCATTTTACTCCATAA
* * *
24250500 GGGTAAAACAGTCATTTTACCTCATAAGGGTAAAACAG-TAATTTTACCTTATAAGCGCAAAACA
1 GGGTAAAACAGTCATTTTACCCCATAAGGGCAAAAC-GCTAATTTTACCTCATAAGCGCAAAACA
24250564 GTCATTTTA
65 GTCATTTTA
24250573 TCAATTAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (81 bp):
GGGTAAAACAGTCATTTTACCCCATAAGGGCAAAACGCTAATTTTACCTCATAAGCGCAAAACAG
TCATTTTACTCCATAA
Found at i:24251863 original size:30 final size:30
Alignment explanation
Indices: 24251787--24251872 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
24251777 TTCAATTCAC
*
24251787 GAGCTAAACCTTAGCTCAACTTCAGCTTAA
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAA
* *
24251817 GAG-TATAATCTCAGCTCAACTTTAGCTTAA
1 GAGCTA-AACCTTAGCTCAACTTTAGCTTAA
* * *
24251847 GGGCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
24251873 CAAACCCGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 10 0.21
30 35 0.74
31 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAA
Found at i:24253489 original size:13 final size:11
Alignment explanation
Indices: 24253458--24253486 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
24253448 AAAAGTATAT
24253458 AAAAAAATTCA
1 AAAAAAATTCA
24253469 AAAAAAATTCA
1 AAAAAAATTCA
24253480 AAAAAAA
1 AAAAAAA
24253487 AATGTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:24254415 original size:5 final size:5
Alignment explanation
Indices: 24254396--24254459 Score: 51
Period size: 5 Copynumber: 12.6 Consensus size: 5
24254386 TCTTGTAAAG
* * *
24254396 AGAAA ATAAA A-AAA AGAAA AGAAAA AGCAAA AGAAG A-AAA AGAAA ACAAA
1 AGAAA AGAAA AGAAA AGAAA AG-AAA AG-AAA AGAAA AGAAA AGAAA AGAAA
*
24254446 ATAAAA AGAAA AGA
1 A-GAAA AGAAA AGA
24254460 GAGGCAAGAG
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
4 7 0.15
5 27 0.56
6 14 0.29
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (5 bp):
AGAAA
Found at i:24254427 original size:12 final size:11
Alignment explanation
Indices: 24254406--24254459 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
24254396 AGAAAATAAA
24254406 AAAAAGAAAAG
1 AAAAAGAAAAG
24254417 AAAAAGCAAAAG
1 AAAAAG-AAAAG
*
24254429 -AAGA-AAAAG
1 AAAAAGAAAAG
* *
24254438 -AAAACAAAAT
1 AAAAAGAAAAG
24254448 AAAAAGAAAAG
1 AAAAAGAAAAG
24254459 A
1 A
24254460 GAGGCAAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
9 8 0.23
10 4 0.11
11 18 0.51
12 5 0.14
ACGTcount: A:0.80, C:0.04, G:0.15, T:0.02
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:24254613 original size:11 final size:12
Alignment explanation
Indices: 24254583--24254612 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24254573 AATTTGAGAG
*
24254583 TGAAAAAGAAGT
1 TGAAAAAGAAAT
24254595 TGAAAAAGAAAT
1 TGAAAAAGAAAT
24254607 TGAAAA
1 TGAAAA
24254613 GGAGATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (12 bp):
TGAAAAAGAAAT
Found at i:24256819 original size:30 final size:30
Alignment explanation
Indices: 24256743--24256828 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
24256733 TTCAATTCAC
*
24256743 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
* *
24256773 GAG-TATAATCTCAGCTCAACTTTAGCTTAAG
1 GAGCTA-AACCTTAGCTCAACTTTAGCTT-AG
* *
24256804 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
24256829 CAAGCCTGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 10 0.21
30 32 0.68
31 5 0.11
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAG
Found at i:24279722 original size:28 final size:29
Alignment explanation
Indices: 24279681--24279736 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
24279671 TCGGGTTTTT
*
24279681 GGACATGGGCGTGT-CTAGGCCGTGTGAG
1 GGACACGGGCGTGTGCTAGGCCGTGTGAG
* *
24279709 GGACACGGGTGTGTGCTTGGCCGTGTGA
1 GGACACGGGCGTGTGCTAGGCCGTGTGA
24279737 AAACCTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.12, C:0.18, G:0.46, T:0.23
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTAGGCCGTGTGAG
Found at i:24284836 original size:19 final size:19
Alignment explanation
Indices: 24284812--24284862 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
24284802 AGGCCTGAGG
24284812 ACACGGGCGTGTCAAAGGC
1 ACACGGGCGTGTCAAAGGC
24284831 ACACGGGCGTGTCAAAGGC
1 ACACGGGCGTGTCAAAGGC
24284850 ACACGGGCGTGTC
1 ACACGGGCGTGTC
24284863 CTTGTGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.24, C:0.27, G:0.37, T:0.12
Consensus pattern (19 bp):
ACACGGGCGTGTCAAAGGC
Found at i:24286360 original size:23 final size:22
Alignment explanation
Indices: 24286302--24286362 Score: 61
Period size: 25 Copynumber: 2.7 Consensus size: 22
24286292 ATTATATTTT
* *
24286302 TATATTATTATA-AATTTAAAA
1 TATATTATTTTATATTTTAAAA
*
24286323 TATATAAATTCTTATATTTATAAAA
1 TATAT-TATT-TTATATTT-TAAAA
24286348 TATATTATTTTATAT
1 TATATTATTTTATAT
24286363 CAAGATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 5 0.16
22 3 0.09
23 8 0.25
24 6 0.19
25 10 0.31
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATTATTTTATATTTTAAAA
Found at i:24286423 original size:25 final size:25
Alignment explanation
Indices: 24286371--24286470 Score: 82
Period size: 25 Copynumber: 4.0 Consensus size: 25
24286361 ATCAAGATTT
* *
24286371 TATAAAATAT-ATTTGT-CCAAATA
1 TATAAAATATAATTTATACAAAATA
24286394 TATAAAATATAATTTATACAAAATA
1 TATAAAATATAATTTATACAAAATA
* * *
24286419 TATAAAATCTAAAATGTATA-AAAATG
1 TATAAAA--TATAATTTATACAAAATA
* *
24286445 TATAAAAT-TATATTTTTATAAAATA
1 TATAAAATATA-ATTTATACAAAATA
24286470 T
1 T
24286471 CAAATTTTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
23 11 0.18
24 11 0.18
25 19 0.31
26 12 0.19
27 9 0.15
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (25 bp):
TATAAAATATAATTTATACAAAATA
Found at i:24286670 original size:19 final size:20
Alignment explanation
Indices: 24286636--24286673 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
24286626 TTAGTTTCAA
24286636 ATAATATTTCTAATATTTTC
1 ATAATATTTCTAATATTTTC
*
24286656 ATAAT-TTTTTAATATTTT
1 ATAATATTTCTAATATTTT
24286674 TAGTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
ATAATATTTCTAATATTTTC
Found at i:24287632 original size:30 final size:31
Alignment explanation
Indices: 24287586--24287646 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
24287576 TATTTTATTA
*
24287586 TTAATTTTTTTTATTATTTTA-AAGACATTTG
1 TTAATTTTTGTTATTATTTTAGAA-ACATTTG
24287617 TTAA-TTTTGTTATTATTTTAGAAACATTTG
1 TTAATTTTTGTTATTATTTTAGAAACATTTG
24287647 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (31 bp):
TTAATTTTTGTTATTATTTTAGAAACATTTG
Found at i:24287799 original size:12 final size:12
Alignment explanation
Indices: 24287769--24287801 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
24287759 TATATATTTT
24287769 AAAATT-ATATA
1 AAAATTAATATA
24287780 AAAA-TAATATA
1 AAAATTAATATA
24287791 AAAATTAATAT
1 AAAATTAATAT
24287802 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:24290224 original size:40 final size:39
Alignment explanation
Indices: 24290187--24290449 Score: 316
Period size: 39 Copynumber: 6.6 Consensus size: 39
24290177 GCTACTCGTT
* *
24290187 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
24290227 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
24290267 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
24290306 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
24290345 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
24290384 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
*
24290425 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCG-GGCTTAGCCCGGA
24290450 CATCATTCAA
Statistics
Matches: 202, Mismatches: 15, Indels: 11
0.89 0.07 0.05
Matches are distributed among these distances:
39 113 0.56
40 78 0.39
41 11 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:24290308 original size:39 final size:39
Alignment explanation
Indices: 24290187--24290396 Score: 323
Period size: 39 Copynumber: 5.3 Consensus size: 39
24290177 GCTACTCGTT
* * *
24290187 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * *
24290227 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
24290267 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
24290306 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
24290345 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
24290384 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24290397 ATCTTAGTCC
Statistics
Matches: 162, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 111 0.69
40 49 0.30
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:24304171 original size:53 final size:52
Alignment explanation
Indices: 24304109--24304238 Score: 136
Period size: 52 Copynumber: 2.5 Consensus size: 52
24304099 ATACCGATGT
* * *
24304109 CATATCCCAGATATGGTCTTATAC-AAAATCACATTATCACATCACACCGACGC
1 CATAGCCCAGCTATGGTCTTATACGAAAA-CACA-TATCACATCACACCAACGC
* * ** * ** *
24304162 CATAGCCCAGCTATGATCCTATACGGGAACACATATCACGTTGCACCAATGC
1 CATAGCCCAGCTATGGTCTTATACGAAAACACATATCACATCACACCAACGC
24304214 CATAGCCCAGCTATGGTCTTATACG
1 CATAGCCCAGCTATGGTCTTATACG
24304239 GGCTCACATA
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
52 37 0.59
53 24 0.38
54 2 0.03
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.24
Consensus pattern (52 bp):
CATAGCCCAGCTATGGTCTTATACGAAAACACATATCACATCACACCAACGC
Found at i:24305142 original size:13 final size:13
Alignment explanation
Indices: 24305100--24305152 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
24305090 AGTTTGGCAA
24305100 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
24305113 TGC-TGTGAAAAAA
1 TGCTTTTG-AAAAG
*
24305126 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
24305139 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
24305152 T
1 T
24305153 TTGGTTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 3 0.09
13 26 0.81
14 3 0.09
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:24308619 original size:9 final size:9
Alignment explanation
Indices: 24308605--24308689 Score: 72
Period size: 8 Copynumber: 9.3 Consensus size: 9
24308595 TACTCTTATT
24308605 AAAAATTAA
1 AAAAATTAA
24308614 AAAAATTATAA
1 AAAAA-T-TAA
24308625 AAAAATT-A
1 AAAAATTAA
24308633 AAAAATT-A
1 AAAAATTAA
24308641 AAAAATT--
1 AAAAATTAA
24308648 AAAAATTAGAA
1 AAAAATT--AA
24308659 AAAAATTATA
1 AAAAATTA-A
*
24308669 AAAATTGTAA
1 AAAAAT-TAA
24308679 AAAAA-TAA
1 AAAAATTAA
24308687 AAA
1 AAA
24308690 TTATAAAATT
Statistics
Matches: 66, Mismatches: 2, Indels: 17
0.78 0.02 0.20
Matches are distributed among these distances:
7 7 0.11
8 22 0.33
9 7 0.11
10 13 0.20
11 17 0.26
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (9 bp):
AAAAATTAA
Found at i:24308627 original size:11 final size:11
Alignment explanation
Indices: 24308611--24308684 Score: 55
Period size: 11 Copynumber: 6.8 Consensus size: 11
24308601 TATTAAAAAT
24308611 TAAAAAAATTA
1 TAAAAAAATTA
24308622 TAAAAAAATTA
1 TAAAAAAATTA
* **
24308633 AAAAATTAAAAAA
1 TAAAA--AAATTA
*
24308646 T-TAAAAATTA
1 TAAAAAAATTA
*
24308656 GAAAAAAATTA
1 TAAAAAAATTA
*
24308667 T--AAAAATTG
1 TAAAAAAATTA
24308676 TAAAAAAAT
1 TAAAAAAAT
24308685 AAAAATTATA
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
9 8 0.17
10 4 0.09
11 29 0.62
12 2 0.04
13 4 0.09
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
TAAAAAAATTA
Found at i:24308680 original size:45 final size:42
Alignment explanation
Indices: 24308602--24308724 Score: 131
Period size: 45 Copynumber: 2.8 Consensus size: 42
24308592 CCCTACTCTT
*
24308602 ATTAAAAATTAAAAAAATTATAAAAAAATTAAAAAATTAAAAA
1 ATTAAAAATTAAAAAAATTATAAAAAAATTAAAAAAAT-AAAA
*
24308645 ATTAAAAATTAGAAAAAAATTAT-AAAAATTGTAAAAAAATAAAA
1 ATTAAAAATT--AAAAAAATTATAAAAAAAT-TAAAAAAATAAAA
* *
24308689 ATTATAAAATTTTTATAAAAATCATAAAAAAATTAA
1 ATTA-AAAA---TTAAAAAAATTATAAAAAAATTAA
24308725 CGCCCATAGT
Statistics
Matches: 67, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
43 10 0.15
44 14 0.21
45 23 0.34
46 12 0.18
47 6 0.09
48 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (42 bp):
ATTAAAAATTAAAAAAATTATAAAAAAATTAAAAAAATAAAA
Found at i:24308689 original size:37 final size:36
Alignment explanation
Indices: 24308614--24308721 Score: 130
Period size: 37 Copynumber: 3.0 Consensus size: 36
24308604 TAAAAATTAA
*
24308614 AAAAATTATAAAAAAATTA-AAAAA-TTAAAAAATT
1 AAAAATTATAAAAAAATTATAAAAATTTAAAAAAAT
*
24308648 AAAAATTAGAAAAAAATTATAAAAATTGTAAAAAAAT
1 AAAAATTATAAAAAAATTATAAAAATT-TAAAAAAAT
*** *
24308685 AAAAATTATAAAATTTTTATAAAAATCATAAAAAAAT
1 AAAAATTATAAAAAAATTATAAAAAT-TTAAAAAAAT
24308722 TAACGCCCAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
34 18 0.29
35 5 0.08
36 1 0.02
37 39 0.62
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (36 bp):
AAAAATTATAAAAAAATTATAAAAATTTAAAAAAAT
Found at i:24308695 original size:9 final size:9
Alignment explanation
Indices: 24308604--24308718 Score: 87
Period size: 9 Copynumber: 12.7 Consensus size: 9
24308594 CTACTCTTAT
24308604 TAAAAATTA
1 TAAAAATTA
*
24308613 AAAAAATTA
1 TAAAAATTA
24308622 TAAAAAAATTA
1 T--AAAAATTA
24308633 -AAAAATTA
1 TAAAAATTA
24308641 -AAAAA-T-
1 TAAAAATTA
24308647 TAAAAATTAGA
1 TAAAAATT--A
*
24308658 AAAAAATTA
1 TAAAAATTA
*
24308667 TAAAAATTG
1 TAAAAATTA
*
24308676 TAAAAA-AA
1 TAAAAATTA
24308684 TAAAAATTA
1 TAAAAATTA
*
24308693 TAAAATTTTTA
1 TAAAA--ATTA
*
24308704 TAAAAATCA
1 TAAAAATTA
24308713 TAAAAA
1 TAAAAA
24308719 AATTAACGCC
Statistics
Matches: 85, Mismatches: 11, Indels: 20
0.73 0.09 0.17
Matches are distributed among these distances:
7 6 0.07
8 20 0.24
9 36 0.42
11 23 0.27
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.28
Consensus pattern (9 bp):
TAAAAATTA
Found at i:24308710 original size:26 final size:26
Alignment explanation
Indices: 24308604--24308697 Score: 95
Period size: 26 Copynumber: 3.5 Consensus size: 26
24308594 CTACTCTTAT
* *
24308604 TAAAAATTAAAAAAATTATAAAAAAA
1 TAAAAATTATAAAAATTGTAAAAAAA
24308630 TTAAAAAATTA-AAAAA-T-TAAAAATTAGA
1 -T-AAAAATTATAAAAATTGTAAAAA--A-A
*
24308658 AAAAAATTATAAAAATTGTAAAAAAA
1 TAAAAATTATAAAAATTGTAAAAAAA
24308684 TAAAAATTATAAAA
1 TAAAAATTATAAAA
24308698 TTTTTATAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
25 6 0.10
26 23 0.40
27 13 0.22
28 10 0.17
29 6 0.10
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (26 bp):
TAAAAATTATAAAAATTGTAAAAAAA
Found at i:24308964 original size:9 final size:8
Alignment explanation
Indices: 24308932--24309053 Score: 63
Period size: 8 Copynumber: 14.9 Consensus size: 8
24308922 ATTTTATAGT
24308932 TTTTTATA
1 TTTTTATA
*
24308940 TTTCTATA
1 TTTTTATA
*
24308948 TATCTTATA
1 T-TTTTATA
24308957 CTTTTTATGA
1 -TTTTTAT-A
24308967 TTTTTATAAA
1 TTTTTAT--A
* *
24308977 ATTTTACA
1 TTTTTATA
*
24308985 ATTTTATA
1 TTTTTATA
* *
24308993 TATATATA
1 TTTTTATA
24309001 TTTTTATGA
1 TTTTTAT-A
24309010 TTTTTATA
1 TTTTTATA
*
24309018 TATTT-T-
1 TTTTTATA
*
24309024 TTTATAT-
1 TTTTTATA
24309031 TTTTTAATA
1 TTTTT-ATA
*
24309040 TTTTAAT-
1 TTTTTATA
24309047 TTTTTAT
1 TTTTTAT
24309054 TAAAATTTAA
Statistics
Matches: 87, Mismatches: 19, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
6 3 0.03
7 12 0.14
8 35 0.40
9 29 0.33
10 8 0.09
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.66
Consensus pattern (8 bp):
TTTTTATA
Found at i:24309022 original size:10 final size:10
Alignment explanation
Indices: 24308926--24309043 Score: 59
Period size: 10 Copynumber: 11.8 Consensus size: 10
24308916 TATAAAATTT
24308926 TATAGTTTTT-
1 TATA-TTTTTA
*
24308936 TATATTTCTA
1 TATATTTTTA
*
24308946 TATA-TCTTA
1 TATATTTTTA
*
24308955 TA-CTTTTTA
1 TATATTTTTA
*
24308964 T-GATTTTTA
1 TATATTTTTA
* *
24308973 TAAAATTTTA
1 TATATTTTTA
*
24308983 CA-ATTTTATA
1 TATATTTT-TA
*
24308993 TATATATATTTT
1 TATAT-T-TTTA
24309005 TATGATTTTTA
1 TAT-ATTTTTA
*
24309016 TATATTTTTT
1 TATATTTTTA
24309026 TATATTTTT-
1 TATATTTTTA
24309035 TAATATTTT
1 T-ATATTTT
24309044 AATTTTTTAT
Statistics
Matches: 84, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
9 26 0.31
10 40 0.48
11 8 0.10
12 6 0.07
13 4 0.05
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (10 bp):
TATATTTTTA
Found at i:24309067 original size:46 final size:46
Alignment explanation
Indices: 24309012--24309100 Score: 110
Period size: 45 Copynumber: 1.9 Consensus size: 46
24309002 TTTTATGATT
* **
24309012 TTTATATATTTTTTTATATTTTTTAAT-ATTTTAATTTTTTATTAAAA
1 TTTATATA-TTATTTATAGCTTTTAATGATTTTAA-TTTTTATTAAAA
*
24309059 TTTA-ATATTATTTATAGCTTTTATTGATTTTAATTTTTATTA
1 TTTATATATTATTTATAGCTTTTAATGATTTTAATTTTTATTA
24309101 TTTTTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
45 23 0.62
46 10 0.27
47 4 0.11
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.66
Consensus pattern (46 bp):
TTTATATATTATTTATAGCTTTTAATGATTTTAATTTTTATTAAAA
Found at i:24314876 original size:69 final size:69
Alignment explanation
Indices: 24314765--24314907 Score: 234
Period size: 69 Copynumber: 2.1 Consensus size: 69
24314755 TCATTTACGA
* *
24314765 AGACTCCCATATATGTACTATGGGCTTAATGAGGGCAATTGCAATA-GTTATTAGTAAGCTGGTT
1 AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAA-AGGTTATTAGTAAGCTGGTT
24314829 AAAAT
65 AAAAT
* *
24314834 AGACTCCTATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGGTGGTTA
1 AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
24314899 AAAT
66 AAAT
24314903 AGACT
1 AGACT
24314908 ACAACATACA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 1 0.01
69 68 0.99
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (69 bp):
AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
AAAT
Found at i:24316525 original size:27 final size:27
Alignment explanation
Indices: 24316485--24316588 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
24316475 AATTCCTTCA
* *
24316485 ATATTACACTACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* *
24316512 ATTTTGCGCCACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * *
24316539 ATATTATGCCAC--ATGTTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
*
24316564 ATATTACACCACAAAGGCTTTTCTT
1 ATATTACGCCACAAAGGCTTTTCTT
24316589 ACCTAACGTG
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
25 21 0.34
27 41 0.66
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (27 bp):
ATATTACGCCACAAAGGCTTTTCTTTC
Found at i:24330397 original size:13 final size:13
Alignment explanation
Indices: 24330379--24330403 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24330369 GGTTTGTTTA
24330379 TTAAACTAATTAT
1 TTAAACTAATTAT
24330392 TTAAACTAATTA
1 TTAAACTAATTA
24330404 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:24333348 original size:12 final size:11
Alignment explanation
Indices: 24333315--24333401 Score: 52
Period size: 12 Copynumber: 7.5 Consensus size: 11
24333305 TATGTCTTTC
24333315 AAAAT-AAAAT
1 AAAATAAAAAT
**
24333325 AATAATTGAAAT
1 AA-AATAAAAAT
24333337 GAAAATAAAAAT
1 -AAAATAAAAAT
* *
24333349 CAAAAGAAAAAG
1 -AAAATAAAAAT
*
24333361 AAAA-AGAAGAT
1 AAAATA-AAAAT
24333372 AAAATAAAAAT
1 AAAATAAAAAT
*
24333383 AAAACTAAATAAA
1 AAAA-TAAA-AAT
24333396 AAAATA
1 AAAATA
24333402 GGAGGATTCA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
10 3 0.05
11 22 0.37
12 27 0.45
13 8 0.13
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:24335829 original size:13 final size:13
Alignment explanation
Indices: 24335811--24335835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24335801 AGAAAAAAAA
24335811 ATATGTGTATTTG
1 ATATGTGTATTTG
24335824 ATATGTGTATTT
1 ATATGTGTATTT
24335836 ATTTGTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
ATATGTGTATTTG
Found at i:24342204 original size:13 final size:13
Alignment explanation
Indices: 24342186--24342210 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24342176 TGTTTGTTTA
24342186 TTAAACTAATTAT
1 TTAAACTAATTAT
24342199 TTAAACTAATTA
1 TTAAACTAATTA
24342211 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:24343548 original size:12 final size:14
Alignment explanation
Indices: 24343531--24343562 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
24343521 AGATAAACAC
24343531 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
24343543 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
24343557 ATGTGT
1 ATGTGT
24343563 TTAAGACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:24343648 original size:50 final size:50
Alignment explanation
Indices: 24343574--24343968 Score: 402
Period size: 50 Copynumber: 7.9 Consensus size: 50
24343564 TAAGACAGTT
*
24343574 TTAGGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
24343624 TTAGGTCCCATGTGTAGTACTAAGTGCAGGCTATTATAC-T-TACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTA--CTACGTGTACCAGATTG
* * * * *
24343674 TTTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
24343725 TTAGGTCACGTGTGTAATACTAAGTGCAGACTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * **** * *
24343775 ATAGGTCACATGTGTAGTACTAAGTGCAGGCCACTATACATACC-CATTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * *
24343826 TTCGATCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGA-TG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
24343875 CATAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
24343926 ATAGGTCGCATGTGTAGTACTAAGTGTAGGCTAATATGTGTAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
24343969 AAGAGAGCTT
Statistics
Matches: 277, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
49 6 0.02
50 195 0.70
51 72 0.26
52 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:24343709 original size:101 final size:98
Alignment explanation
Indices: 24343579--24343968 Score: 381
Period size: 101 Copynumber: 3.9 Consensus size: 98
24343569 CAGTTTTAGG
* *
24343579 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCCCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
* * *
24343644 TAAGTGCAGGCTATTATAC-T-TACCCGATAGTTTCGA
66 TAAGTGCAGGCTA--CTACGTGTACCAGAT-G-AT-GA
* * * * *
24343680 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
* *
24343745 TAAGTGCAGACTACTACGTGTACCAGATTGATAGG
66 TAAGTGCAGGCTACTACGTGTACCAGA-TGAT-GA
* * **** * * * * *
24343780 TCACATGTGTAGTACTAAGTGCAGGCCACTATACATACC-CATTAACTTCGATCACGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACATGTGTAGT
* * *
24343844 ACTAAGTGCAGCCTACTACGTGTATCAGATGCATAA
64 ACTAAGTGCAGGCTACTACGTGTACCAGATG-ATGA
* *
24343880 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
* * *
24343945 CTAAGTGTAGGCTAATATGTGTAC
65 CTAAGTGCAGGCTACTACGTGTAC
24343969 AAGAGAGCTT
Statistics
Matches: 232, Mismatches: 49, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
99 5 0.02
100 69 0.30
101 154 0.66
102 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATGATGA
Found at i:24343804 original size:151 final size:151
Alignment explanation
Indices: 24343532--24343958 Score: 604
Period size: 151 Copynumber: 2.8 Consensus size: 151
24343522 GATAAACACA
* * * * * * * *
24343532 TGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTATTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TG-CTTAGGTCACGTGTGTAGTACTAA
* * *
24343597 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTATTATA
64 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATA
* ** *
24343662 CTTACCCGA-TAGTTTCGATCATG
129 CATACCC-ATTAACTTCGATCACG
* *
24343685 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAATACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGCTTAGGTCACGTGTGTAGTACTAAGT
* *
24343750 GCAGACTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCCACTATACA
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACA
24343815 TACCCATTAACTTCGATCACG
131 TACCCATTAACTTCGATCACG
* * *
24343836 TGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGATGCATAAGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGCTTAGGTCACGTGTGTAGTACTAAGT
* *
24343901 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGTAGGCTA
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTA
24343959 ATATGTGTAC
Statistics
Matches: 246, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
150 1 0.00
151 212 0.86
152 1 0.00
153 32 0.13
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGCTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACA
TACCCATTAACTTCGATCACG
Found at i:24351072 original size:13 final size:13
Alignment explanation
Indices: 24351054--24351085 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
24351044 TTTTGAAGCT
24351054 AGAGATGTTAGAA
1 AGAGATGTTAGAA
24351067 AGAGATGTTAGAA
1 AGAGATGTTAGAA
24351080 AGAGAT
1 AGAGAT
24351086 CTTCGAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (13 bp):
AGAGATGTTAGAA
Found at i:24353801 original size:40 final size:39
Alignment explanation
Indices: 24353770--24353940 Score: 245
Period size: 39 Copynumber: 4.3 Consensus size: 39
24353760 GGACTAAGAT
24353770 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
24353809 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
24353848 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* * * *
24353888 CCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-C
24353928 CCGAAGGCATTTG
1 CCGAAGGCATTTG
24353941 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 75 0.61
40 47 0.39
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:24353818 original size:39 final size:40
Alignment explanation
Indices: 24353717--24353940 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
24353707 TTGAATGATG
* * *
24353717 TCCGGGCTAAGTCCCGAAGAC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
24353756 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
24353797 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24353836 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
24353875 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24353914 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24353941 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 76 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:24353865 original size:78 final size:80
Alignment explanation
Indices: 24353717--24353940 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
24353707 TTGAATGATG
* * * * * *
24353717 TCCGGGCTAAGTCCCGAAGAC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
24353779 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* *
24353797 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATT
*
24353859 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
24353875 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
24353940 G
66 G
24353941 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 36 0.29
79 54 0.43
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:24353971 original size:79 final size:79
Alignment explanation
Indices: 24353770--24353973 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
24353760 GGACTAAGAT
** * * * * *
24353770 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTACGAGATACTA
*
24353834 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
24353848 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTACGAGATACTA
*
24353912 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
24353928 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
24353974 TACGTGATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 34 0.31
79 49 0.45
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTACGAGATACTA
ATACCGGGCTAAGC
Found at i:24361811 original size:39 final size:40
Alignment explanation
Indices: 24361710--24361972 Score: 335
Period size: 39 Copynumber: 6.7 Consensus size: 40
24361700 TTGAATGATG
* *
24361710 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
24361749 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
24361790 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
24361829 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24361868 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24361907 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24361946 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24361973 AACGAGTAGC
Statistics
Matches: 203, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 112 0.55
40 78 0.38
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:24372677 original size:45 final size:45
Alignment explanation
Indices: 24372613--24372700 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
24372603 GGATCAACCC
24372613 GAATACCCGATGATGATACTACCTGGCCCAAAAAACTAACTTCCT
1 GAATACCCGATGATGATACTACCTGGCCCAAAAAACTAACTTCCT
*
24372658 GAATACCCGATGATGATACTACCTGGCCCAGAAAACTAACTTC
1 GAATACCCGATGATGATACTACCTGGCCCAAAAAACTAACTTC
24372701 ACTTAACCAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (45 bp):
GAATACCCGATGATGATACTACCTGGCCCAAAAAACTAACTTCCT
Found at i:24389236 original size:51 final size:51
Alignment explanation
Indices: 24389055--24389324 Score: 292
Period size: 51 Copynumber: 5.3 Consensus size: 51
24389045 GTTGTGAGAA
* * *** * *
24389055 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG-TTTAGAT
* * * * *
24389107 CACATATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTAGAT
* * * *
24389157 CGCATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTAGAT
* * *
24389208 CACATGTGTAGTACTAAGGGCAGGCTACTATGCGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTAGAT
* * * * * *
24389259 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAAT-GGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTAGAT
24389309 CACATGTGTAGTACTA
1 CACATGTGTAGTACTA
24389325 TGTAACACCC
Statistics
Matches: 188, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
50 64 0.34
51 88 0.47
52 36 0.19
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTAGAT
Found at i:24390224 original size:27 final size:27
Alignment explanation
Indices: 24390190--24390655 Score: 526
Period size: 27 Copynumber: 17.3 Consensus size: 27
24390180 CCAAAGTACT
24390190 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** * *
24390217 CTCTATTTTTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
24390244 CTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
24390271 CTC-AGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
24390298 CTCGATTTATAGAATTGCCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
24390325 CTC-AGTTTATAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
24390352 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
24390379 CTCGATTTGTAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
24390406 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
24390433 CTC-AGTTTATAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
24390460 CTCGATTTACAGAATTATCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
24390487 CTC-AGTTTACAGAATTACTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
24390514 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** *
24390541 CTTGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * * *
24390568 CTTGATTTACAGAATTGCTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
24390595 CTCAATTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
24390622 CTCGATTTACAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
24390649 CTTGATT
1 CTCGATT
24390656 GTGAAATTAC
Statistics
Matches: 378, Mismatches: 53, Indels: 16
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.01
27 370 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:24390690 original size:27 final size:27
Alignment explanation
Indices: 24390660--24390853 Score: 199
Period size: 27 Copynumber: 7.2 Consensus size: 27
24390650 TTGATTGTGA
*
24390660 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
24390687 AATTTCCGAAATACCCTTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
24390714 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
24390741 AAGTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*** *
24390768 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
24390795 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
24390822 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
24390849 AATTA
1 AATTA
24390854 TCATTTTGCC
Statistics
Matches: 139, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:24390725 original size:54 final size:54
Alignment explanation
Indices: 24390660--24390851 Score: 242
Period size: 54 Copynumber: 3.6 Consensus size: 54
24390650 TTGATTGTGA
* * * * *
24390660 AATTACTAAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCTTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * *
24390714 AATTACTAAAATACCCTTATAGGATAGAAGTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* *
24390768 AATTATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
** * *
24390822 AATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AATTACTAAAATACCCTTGTAGGGTAGAAAT
24390852 TATCATTTTG
Statistics
Matches: 120, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 4 0.03
54 116 0.97
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:24390766 original size:81 final size:81
Alignment explanation
Indices: 24390667--24390855 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 81
24390657 TGAAATTACT
* * *
24390667 AAAATACCCCTGTAGGGTAGAATT-TCCGAAATACCCTTATAGGGTAGAATTACTAAAATACCCT
1 AAAATACCCCTGTAGGGTAGAATTAT-CGAAATACCCTTATAGGGTAGAAATACCAAAATACCCC
24390731 TATAGGATAGAAGTACC
65 TATAGGATAGAAGTACC
* * *
24390748 AAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT
1 AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCAAAATACCCCT
* * *
24390813 GTAGGGTAGAATTACC
66 ATAGGATAGAAGTACC
* * * * *
24390829 GAGATACCCTTGTGGGGTAAAATTATC
1 AAAATACCCCTGTAGGGTAGAATTATC
24390856 ATTTTGCCCC
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 91 0.99
82 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCAAAATACCCCT
ATAGGATAGAAGTACC
Found at i:24391092 original size:27 final size:26
Alignment explanation
Indices: 24391054--24391136 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
24391044 CGGAGGAAGC
* *
24391054 GTTCTAGTGGCTATGCCACAGATATCT
1 GTTCTGGTGGCTCTGCCACA-ATATCT
*
24391081 GTTCTGGTGGCTCTGGCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
24391107 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
24391134 GTT
1 GTT
24391137 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:24391256 original size:22 final size:22
Alignment explanation
Indices: 24391224--24391282 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
24391214 CCCGTTATTA
*
24391224 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
24391246 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
24391268 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
24391283 ACATATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:24391620 original size:6 final size:6
Alignment explanation
Indices: 24391611--24391785 Score: 173
Period size: 6 Copynumber: 28.8 Consensus size: 6
24391601 TTGCATTCAC
* *
24391611 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
24391660 -TTACTA ATAT-TG ATTCTG ATTTTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* *
24391708 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
24391757 ATTCTG -TTACTG ATTCTA ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
24391786 CATTTTGGTT
Statistics
Matches: 141, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
5 9 0.06
6 120 0.85
7 9 0.06
8 3 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:24391771 original size:85 final size:85
Alignment explanation
Indices: 24391611--24391773 Score: 251
Period size: 85 Copynumber: 1.9 Consensus size: 85
24391601 TTGCATTCAC
*
24391611 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
*
24391676 TGATTTTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
24391696 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATT-CTGAT-TCTGAT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TTACTAATAT-TGAT
24391759 TCTG-TTACTGATTCT
64 TCTGATT-CTGATTCT
24391774 AATTCTGATT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
84 3 0.04
85 67 0.93
86 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
TGATTCTGATTCTGTTACTG
Found at i:24393837 original size:27 final size:27
Alignment explanation
Indices: 24393799--24394284 Score: 487
Period size: 27 Copynumber: 18.0 Consensus size: 27
24393789 GTACTCCCGA
*
24393799 TTACAGAATTACCATTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
24393826 TTACAGAATTACTGTTTTACCTTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
** *
24393853 TTTTAAAATTACCGTTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
24393880 TTACAGAATTACCGTTTTACCCTC-AGT
1 TTACAGAATTACCGTTTTACCCTCGA-T
* * * *
24393907 TCACAAAATTACCATTTTACCCTCAAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
24393934 TTACA-AAATATCGTTTTACCCTC-AGT
1 TTACAGAATTACCGTTTTACCCTCGA-T
* * *
24393960 TTATAGAATCACCGTTTTACCTTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
24393987 TTATAGAATTACTGTTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
** * * * *
24394014 TTGTAAAACTACCATTTTACCCTTGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
24394041 TTACAGAATTACCGTTTTACCTTCAAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* * *
24394068 TTATAGAATTACCATTTTATCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
24394095 TTACAGAATTATCATTTTACCCTC-AGT
1 TTACAGAATTACCGTTTTACCCTCGA-T
* **
24394122 TTATAGAATTACTATTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
*
24394149 TTACAGAATTACCATTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
** * * *
24394176 TTGTAAAATTACCGTTTTTCCCTTGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
24394203 TTACAGAATTACTGGTTTACCCTC-AGT
1 TTACAGAATTACCGTTTTACCCTCGA-T
* * * *
24394230 TTAAAAAATTATCGTTTTACACTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
*
24394257 TTACAGAATTACCGTTTTACCCTTGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
24394284 T
1 T
24394285 GTGAAATTAT
Statistics
Matches: 373, Mismatches: 77, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
25 1 0.00
26 23 0.06
27 345 0.92
28 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TTACAGAATTACCGTTTTACCCTCGAT
Done.