Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 82 of 311
Found at i:25748183 original size:58 final size:57
Alignment explanation
Indices: 25748037--25748190 Score: 195
Period size: 58 Copynumber: 2.7 Consensus size: 57
25748027 TTTTAATAGG
* * * *
25748037 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATTTTAACATA
1 ATTATTATTAAATATAATTTAA-AAAAATAATATATAATTTAATAAAATTTTAACATA
* *
25748095 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAATATAATTTAAAAAAATAATATATAATTTAATAAAATT-TTAACATA
*
25748153 ATTATTATTATAT-TAA-TTAAAAAATCATAATATATAAT
1 ATTATTATTAAATATAATTTAAAAAA--ATAATATATAAT
25748191 ACTATAAAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
56 7 0.08
57 26 0.31
58 52 0.61
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (57 bp):
ATTATTATTAAATATAATTTAAAAAAATAATATATAATTTAATAAAATTTTAACATA
Found at i:25752938 original size:27 final size:27
Alignment explanation
Indices: 25752898--25752975 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
25752888 AGGAAGCGTC
25752898 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTATGCCACAA-TATCTGTAT
*
25752925 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATATCTGTAT
* *
25752952 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTAT-GCCACAATATCTG
25752976 GCAACCTCGC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 7 0.15
27 39 0.85
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATATCTGTAT
Found at i:25757415 original size:27 final size:27
Alignment explanation
Indices: 25757375--25757461 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
25757365 AGGAAGCGTC
* *
25757375 CTGGTCGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATTTGAT
* *
25757402 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATTTGAT
*
25757429 TTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATTTG-AT
25757456 CTGGTG
1 CTGGTG
25757462 ACTTCGTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
26 7 0.14
27 41 0.84
28 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATTTGAT
Found at i:25759072 original size:44 final size:43
Alignment explanation
Indices: 25759008--25759104 Score: 135
Period size: 44 Copynumber: 2.3 Consensus size: 43
25758998 TATGTGTTAT
*
25759008 CGTGTAAGACCACGTCTGGGACGTTGGCATC-GACTTATGATTTA
1 CGTGTAAGACCACCTCTGGGACGTTGGCATCAGAC-T-TGATTTA
* *
25759052 CGTGTAAGACCACCTTTGGGACGTTGGCATCATACTTGATTTA
1 CGTGTAAGACCACCTCTGGGACGTTGGCATCAGACTTGATTTA
25759095 -GTGTAAGACC
1 CGTGTAAGACC
25759105 CTGTCTAGGA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
42 10 0.20
43 7 0.14
44 30 0.61
45 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACCTCTGGGACGTTGGCATCAGACTTGATTTA
Found at i:25763439 original size:9 final size:9
Alignment explanation
Indices: 25763425--25763463 Score: 78
Period size: 9 Copynumber: 4.3 Consensus size: 9
25763415 TCTGAACACT
25763425 CCACCTCCC
1 CCACCTCCC
25763434 CCACCTCCC
1 CCACCTCCC
25763443 CCACCTCCC
1 CCACCTCCC
25763452 CCACCTCCC
1 CCACCTCCC
25763461 CCA
1 CCA
25763464 ATTCCTCAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.13, C:0.77, G:0.00, T:0.10
Consensus pattern (9 bp):
CCACCTCCC
Found at i:25768183 original size:51 final size:49
Alignment explanation
Indices: 25768016--25768191 Score: 237
Period size: 48 Copynumber: 3.6 Consensus size: 49
25768006 ATCTGATACG
* * * *
25768016 CATAGTAGCGTGCACATAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
*
25768065 CGTAGTAGCCTGCACTTAGTACTACACAC-TGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* * * * *
25768113 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACA
25768164 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
25768192 TGCGACCTTA
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 47 0.41
49 28 0.25
50 1 0.01
51 38 0.33
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:25771435 original size:12 final size:12
Alignment explanation
Indices: 25771418--25771442 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25771408 ATGTAAGTGA
25771418 TCTTGATGATTT
1 TCTTGATGATTT
25771430 TCTTGATGATTT
1 TCTTGATGATTT
25771442 T
1 T
25771443 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:25776200 original size:22 final size:22
Alignment explanation
Indices: 25776175--25776219 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
25776165 AGACATTCCA
25776175 AAAACTACATTCAGAACGAGGT
1 AAAACTACATTCAGAACGAGGT
* *
25776197 AAAACTGCATTCAGAATGAGGT
1 AAAACTACATTCAGAACGAGGT
25776219 A
1 A
25776220 TGGCCACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (22 bp):
AAAACTACATTCAGAACGAGGT
Found at i:25785308 original size:30 final size:30
Alignment explanation
Indices: 25785272--25785331 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25785262 TTCCCGAGCC
*
25785272 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
25785302 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
25785332 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:25793641 original size:43 final size:43
Alignment explanation
Indices: 25793495--25793653 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
25793485 TATGTGTTAT
* *
25793495 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
* ** * *
25793539 CGTGTAAGACCACGTCTAGGACATTGGTGTCG-TACTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* *
25793581 CGTGTAAGACTC-TGTCTGGGACAATGGCATCGATATTTGATTA
1 CGTGTAAGAC-CACGTCTGGGACATTGGCATCGATATTTGATTA
* *
25793624 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
25793654 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.31
43 36 0.39
44 28 0.30
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:25804600 original size:24 final size:25
Alignment explanation
Indices: 25804573--25804628 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
25804563 CTTTTTTTAT
*
25804573 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
25804597 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
25804622 -AAATAAA
1 TAAATAAA
25804629 TATTAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:25804614 original size:25 final size:23
Alignment explanation
Indices: 25804585--25804649 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
25804575 AATAAAAAAC
*
25804585 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
25804610 TTTAAAACATAAAAATAAAT--A
1 TTTAAAACATAAAAATAAATACA
*
25804631 -TTAAAATA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
25804650 AATAATGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 10 0.27
20 7 0.19
21 1 0.03
23 4 0.11
24 4 0.11
25 11 0.30
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:25805908 original size:58 final size:58
Alignment explanation
Indices: 25805818--25805986 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
25805808 ACGCCTATCG
25805818 AATATGAAAAAGGG-TGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCA
1 AATATG-AAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCA
* *
25805876 AATATGAAAAGGGATGGTGACGACCATTGAATATGAAAAGGGATGGTTTTGACCATCA
1 AATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCA
*
25805934 AATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGTATGGTTTCGAC
1 AATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGAC
25805987 TATTGTTTAG
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
57 7 0.07
58 98 0.93
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (58 bp):
AATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCATCA
Found at i:25805986 original size:29 final size:29
Alignment explanation
Indices: 25805814--25805980 Score: 237
Period size: 29 Copynumber: 5.8 Consensus size: 29
25805804 ATCGACGCCT
25805814 ATCGAATATGAAAAAGGG-TGGTGACGACC
1 ATCGAATATG-AAAAGGGATGGTGACGACC
**
25805843 ATCGAATATGAAAAGGGATGGTTTCGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
*
25805872 ATCAAATATGAAAAGGGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
* ***
25805901 ATTGAATATGAAAAGGGATGGTTTTGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
*
25805930 ATCAAATATGAAAAGGGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
*
25805959 ATCGAATATGAAAAGGTATGGT
1 ATCGAATATGAAAAGGGATGGT
25805981 TTCGACTATT
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
28 7 0.06
29 113 0.94
ACGTcount: A:0.38, C:0.11, G:0.28, T:0.22
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGACGACC
Found at i:25812731 original size:43 final size:42
Alignment explanation
Indices: 25812684--25812840 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 42
25812674 ACACATATCG
* * *
25812684 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCAATTGACA
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCAATT-ACA
* * **
25812727 ATGCCAATGTCCCAGACATGGTCTTACACATAATCGTATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATC-AATTACA
*
25812770 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCA-ATTACA
25812813 ATGCCAATGAT-CCAGACATGGTCTTACA
1 ATGCCAATG-TCCCAGACATGGTCTTACA
25812841 TGTAATCTCA
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
43 96 0.97
44 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCAATTACA
Found at i:25812847 original size:43 final size:43
Alignment explanation
Indices: 25812650--25812840 Score: 198
Period size: 43 Copynumber: 4.4 Consensus size: 43
25812640 CAATGTCATA
* * *
25812650 TCCCAGATATGGTCTTACATGC-TAA-CAC-ATATCGATGCCACTG
1 TCCCAGACATGGTCTTACA--CATAATCACAATA-CAATGCCAATG
* * *
25812693 TCCCAGACAGGGTCTTACACAAAATCA-ATTGACAATGCCAATG
1 TCCCAGACATGGTCTTACACATAATCACAAT-ACAATGCCAATG
* *
25812736 TCCCAGACATGGTCTTACACATAATCGTATAAT--GATGCCAATG
1 TCCCAGACATGGTCTTACACATAATC--ACAATACAATGCCAATG
25812779 TCCCAGACATGGTCTTACACATAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACATAATCACAATACAATGCCAATG
25812822 AT-CCAGACATGGTCTTACA
1 -TCCCAGACATGGTCTTACA
25812841 TGTAATCTCA
Statistics
Matches: 126, Mismatches: 12, Indels: 20
0.80 0.08 0.13
Matches are distributed among these distances:
41 5 0.04
42 2 0.02
43 114 0.90
44 2 0.02
45 1 0.01
46 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACATAATCACAATACAATGCCAATG
Found at i:25812847 original size:86 final size:86
Alignment explanation
Indices: 25812650--25812847 Score: 251
Period size: 86 Copynumber: 2.3 Consensus size: 86
25812640 CAATGTCATA
* *
25812650 TCCCAGATATGGTCTTACATGCTAA-CACATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
1 TCCCAGACATGGTCTTACATG-TAATCACATATCGATGCCAATGTCCCAGACAGGGTCTTACACA
*
25812714 AAATCAATTGACAATGCCAATG
65 AAATCAAATGACAATGCCAATG
** ** *
25812736 TCCCAGACATGGTCTTACACATAATCGTATAAT-GATGCCAATGTCCCAGACATGGTCTTACACA
1 TCCCAGACATGGTCTTACATGTAATCACAT-ATCGATGCCAATGTCCCAGACAGGGTCTTACACA
*
25812800 TAATCACAAT-ACAATGCCAATG
65 AAATCA-AATGACAATGCCAATG
25812822 AT-CCAGACATGGTCTTACATGTAATC
1 -TCCCAGACATGGTCTTACATGTAATC
25812848 TCATCTAGGT
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
85 3 0.03
86 89 0.92
87 5 0.05
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (86 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
AATCAAATGACAATGCCAATG
Found at i:25825774 original size:25 final size:25
Alignment explanation
Indices: 25825716--25825798 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
25825706 CTGGAGGCCT
*
25825716 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAATTGGGGCAAA
25825741 AGCCCTTTTAATAAATTGGGGCAAA
1 AGCCCTTTTAATAAATTGGGGCAAA
* ** *
25825766 A-CCATTTTTGGTAAATTGGGGC-AT
1 AGCC-CTTTTAATAAATTGGGGCAAA
25825790 AGCCCTTTT
1 AGCCCTTTT
25825799 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 16 0.33
25 33 0.67
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (25 bp):
AGCCCTTTTAATAAATTGGGGCAAA
Found at i:25825869 original size:20 final size:20
Alignment explanation
Indices: 25825846--25825912 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
25825836 TTATGAATAC
25825846 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25825866 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25825886 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
25825906 ATCATGT
1 ATCATGT
25825913 ATATCAAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25825876 original size:40 final size:39
Alignment explanation
Indices: 25825832--25825912 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 39
25825822 CCCAACCCAA
25825832 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCATG
*
25825872 TGCATATCATACATATCATGTGCATATCATATCAATCATG
1 TGCATATAATACA-ATCATGTGCATATCATATCAATCATG
25825912 T
1 T
25825913 ATATCAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 28 0.76
41 2 0.05
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATATCAATCATG
Found at i:25825877 original size:11 final size:11
Alignment explanation
Indices: 25825846--25825901 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
25825836 TTATGAATAC
25825846 ATCATGTGCAT
1 ATCATGTGCAT
*
25825857 ATCA--TACAT
1 ATCATGTGCAT
25825866 ATCATGTGCAT
1 ATCATGTGCAT
*
25825877 ATCA--TACAT
1 ATCATGTGCAT
25825886 ATCATGTGCAT
1 ATCATGTGCAT
25825897 ATCAT
1 ATCAT
25825902 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:25825918 original size:9 final size:10
Alignment explanation
Indices: 25825846--25825918 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 10
25825836 TTATGAATAC
25825846 ATCATGTGCAT
1 ATCATGT-CAT
*
25825857 ATCAT-ACAT
1 ATCATGTCAT
25825866 ATCATGTGCAT
1 ATCATGT-CAT
*
25825877 ATCAT-ACAT
1 ATCATGTCAT
25825886 ATCATGTGCAT
1 ATCATGT-CAT
*
25825897 ATCATATCA-
1 ATCATGTCAT
25825906 ATCATGT-AT
1 ATCATGTCAT
25825915 ATCA
1 ATCA
25825919 AATTCCATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.51
10 2 0.04
11 22 0.43
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:25833202 original size:26 final size:25
Alignment explanation
Indices: 25833160--25833243 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
25833150 TTGGAGGCCT
*
25833160 AGCCTCTTCTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGCAAA
**
25833185 AGCCCTTTTCGGTAAACTGGGGCAAA
1 AGCCCTTTT-AATAAACTGGGGCAAA
*
25833211 AGCCCTTTTAATAAACTGGGGC-AT
1 AGCCCTTTTAATAAACTGGGGCAAA
25833235 AGCCCTTTT
1 AGCCCTTTT
25833244 TGCACTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
24 14 0.27
25 16 0.31
26 21 0.41
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:25833244 original size:25 final size:26
Alignment explanation
Indices: 25833169--25833244 Score: 95
Period size: 25 Copynumber: 3.0 Consensus size: 26
25833159 TAGCCTCTTC
25833169 TAAT-AACTGGGGCAAAAGCCCTTTT
1 TAATAAACTGGGGCAAAAGCCCTTTT
***
25833194 CGGTAAACTGGGGCAAAAGCCC-TTT
1 TAATAAACTGGGGCAAAAGCCCTTTT
*
25833219 TAATAAACTGGGGC-ATAGCCCTTTT
1 TAATAAACTGGGGCAAAAGCCCTTTT
25833244 T
1 T
25833245 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
24 6 0.14
25 19 0.45
26 17 0.40
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
TAATAAACTGGGGCAAAAGCCCTTTT
Found at i:25833314 original size:20 final size:20
Alignment explanation
Indices: 25833291--25833337 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
25833281 TTATGAATAC
25833291 ATCATGTGCATATCATAT-A
1 ATCATGTGCATATCATATCA
25833310 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
25833331 ATCATGT
1 ATCATGT
25833338 ATATCAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:25836923 original size:27 final size:27
Alignment explanation
Indices: 25836893--25837016 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
25836883 TGTAGGGTAG
* *
25836893 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTGTAA
25836920 AATTACCAAAATA-CCTCTGGTTTGTAA
1 AATTACCAAAATACCCT-TGGTTTGTAA
* *
25836947 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
****
25836974 AATTACCAAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
25837001 AATTA-CAAAAGTACCC
1 AATTACCAAAA-TACCC
25837017 CCGATTTAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.09
27 76 0.88
28 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:25836999 original size:54 final size:54
Alignment explanation
Indices: 25836893--25837033 Score: 155
Period size: 54 Copynumber: 2.6 Consensus size: 54
25836883 TGTAGGGTAG
* * * ***
25836893 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCTCTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCTCTAACTTGTAA
*
25836947 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTCAACTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCTCT-AACTTGTAA
*
25837001 AATTA-CAAAAGTACCCC-CGATTTA-AAAATTACC
1 AATTACCAAAA-TACCCCTAG-TTTATAAAATTACC
25837034 GTTTTACCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
53 17 0.23
54 58 0.77
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCTCTAACTTGTAA
Found at i:25837084 original size:27 final size:27
Alignment explanation
Indices: 25837061--25837194 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 27
25837051 CAAAATTATT
* *
25837061 GAAATATCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
25837088 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
25837115 AAAATACCCTTGTAAGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
25837142 GAAATGCCCCTGTAGAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
25837169 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
25837195 AATTTTGCCC
Statistics
Matches: 87, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:25837635 original size:22 final size:22
Alignment explanation
Indices: 25837583--25837647 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
25837573 GCCAATTATT
*
25837583 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
25837605 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
25837627 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
25837648 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:25837846 original size:27 final size:26
Alignment explanation
Indices: 25837805--25837911 Score: 88
Period size: 27 Copynumber: 4.0 Consensus size: 26
25837795 TATTCTGTTA
* * * *
25837805 AGTGGCTTTGTCACATTATTTGTTTCT
1 AGTGGCTATGCCACAATATCTG-TTCT
25837832 AGTGGCTATGCCACAAATATCTGTTCT
1 AGTGGCTATGCCAC-AATATCTGTTCT
* *
25837859 GGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTATGCCACAATATCTGT-TCT
* * * * *
25837886 GGTGACTCTGTCACAATATCTATTCT
1 AGTGGCTATGCCACAATATCTGTTCT
25837912 GGCAGCCATG
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 51 0.74
28 6 0.09
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (26 bp):
AGTGGCTATGCCACAATATCTGTTCT
Found at i:25839614 original size:34 final size:34
Alignment explanation
Indices: 25839563--25839649 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
25839553 CAGAGTTGAA
* * * * *
25839563 CAGTCTGGGCCTAAGCCCA-TATCAGTCGGATTAT
1 CAGTATGGGCCTTAGCCCATTA-CAGTAGCAATAT
*
25839597 CAGTGTGGGCCTTAGCCCATTACAGTAGCAATAT
1 CAGTATGGGCCTTAGCCCATTACAGTAGCAATAT
*
25839631 CAGTATGAGCCTTAGCCCA
1 CAGTATGGGCCTTAGCCCA
25839650 ACTCAATACA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 43 0.96
35 2 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTATGGGCCTTAGCCCATTACAGTAGCAATAT
Found at i:25857263 original size:48 final size:49
Alignment explanation
Indices: 25857179--25857292 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 49
25857169 TTTGGATTTG
*** *
25857179 GGCCATGGTATAGGTA-TTTTGGAGATGAGTTACCTTGATTAGGCTACA
1 GGCCATGGTATAGGTACTCCAGGAGATAAGTTACCTTGATTAGGCTACA
* * ***
25857227 GGCCATGGTATAGGTACTCCAGG-GATAAGTTGCCTTGATTTGGCTTTG
1 GGCCATGGTATAGGTACTCCAGGAGATAAGTTACCTTGATTAGGCTACA
25857275 GGCCATGGTATAGGTACT
1 GGCCATGGTATAGGTACT
25857293 TAACGATAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 53 0.95
49 3 0.05
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (49 bp):
GGCCATGGTATAGGTACTCCAGGAGATAAGTTACCTTGATTAGGCTACA
Found at i:25860345 original size:25 final size:25
Alignment explanation
Indices: 25860272--25860351 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
25860262 TACCTATTTG
* * **
25860272 TAGCTCGTAAGAGCATACTGATTTG
1 TAGCTCATAAGAGCATACCGATTCA
*
25860297 TAGCTCATAAGAGCATATCGATTCA
1 TAGCTCATAAGAGCATACCGATTCA
*
25860322 TAGCTCATAAGAGCATACCAATTCA
1 TAGCTCATAAGAGCATACCGATTCA
25860347 TAGCT
1 TAGCT
25860352 TGTATGAGCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (25 bp):
TAGCTCATAAGAGCATACCGATTCA
Found at i:25864176 original size:16 final size:16
Alignment explanation
Indices: 25864155--25864186 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25864145 TGCCTAAGGG
25864155 CATATTGGTTGTATGT
1 CATATTGGTTGTATGT
25864171 CATATTGGTTGTATGT
1 CATATTGGTTGTATGT
25864187 GATCATACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (16 bp):
CATATTGGTTGTATGT
Found at i:25865236 original size:34 final size:34
Alignment explanation
Indices: 25865193--25865261 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
25865183 TTACCTGTGA
25865193 TAGTGTGGTATCTCTTGACTTTTAAAAACATGTT
1 TAGTGTGGTATCTCTTGACTTTTAAAAACATGTT
*
25865227 TAGTGTGGTATCTCTTGACTTTTTAAAACATGTT
1 TAGTGTGGTATCTCTTGACTTTTAAAAACATGTT
25865261 T
1 T
25865262 TCATAAAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (34 bp):
TAGTGTGGTATCTCTTGACTTTTAAAAACATGTT
Found at i:25871191 original size:25 final size:25
Alignment explanation
Indices: 25871153--25871246 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 25
25871143 TTACCAATTT
* * *
25871153 ATAGCCCGTGAGAGCATACTGATTT
1 ATAGCTCGTAAGAGCATACTGATTC
* **
25871178 ATAGCTCGTAAGAGTATACCAATTC
1 ATAGCTCGTAAGAGCATACTGATTC
* *
25871203 ATAGCTCGTGAGAGCATTCTGATTC
1 ATAGCTCGTAAGAGCATACTGATTC
* *
25871228 ATAGCTCATATGAGCATAC
1 ATAGCTCGTAAGAGCATAC
25871247 ATGTACATGA
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (25 bp):
ATAGCTCGTAAGAGCATACTGATTC
Found at i:25877111 original size:45 final size:45
Alignment explanation
Indices: 25877051--25877167 Score: 128
Period size: 45 Copynumber: 2.6 Consensus size: 45
25877041 CCTGAGCTGA
* *
25877051 TGAATAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCTA-TCAAGT
1 TGAAAAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCCAGT-AAGT
* ** *
25877096 TGAAAAGTAAGCTCTATTGATATGAAACGGTAAGCTCCAGTGAGT
1 TGAAAAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCCAGTAAGT
* *
25877141 TGAAAATAGTAAGCTCTTACGAGCTGA
1 TG-AAA-AGTAAGCTCTAATGAGCTGA
25877168 TATATCAGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
45 39 0.67
46 4 0.07
47 15 0.26
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (45 bp):
TGAAAAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCCAGTAAGT
Found at i:25877144 original size:23 final size:22
Alignment explanation
Indices: 25877057--25877145 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 22
25877047 CTGATGAATA
*
25877057 GTAAGCTCTAATGAGCTGAAACG
1 GTAAGCTCT-ATGAGTTGAAACG
* *
25877080 GTAAGCTCTATCAAGTTGAAA-A
1 GTAAGCTCTAT-GAGTTGAAACG
25877102 GTAAGCTCTATTGA-TATGAAACG
1 GTAAGCTCTA-TGAGT-TGAAACG
*
25877125 GTAAGCTCCAGTGAGTTGAAA
1 GTAAGCTCTA-TGAGTTGAAA
25877146 ATAGTAAGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.02
22 18 0.33
23 34 0.63
24 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.26
Consensus pattern (22 bp):
GTAAGCTCTATGAGTTGAAACG
Found at i:25879494 original size:51 final size:49
Alignment explanation
Indices: 25879416--25879556 Score: 192
Period size: 49 Copynumber: 2.8 Consensus size: 49
25879406 TGTGAGGTCG
*
25879416 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCAATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-AATCA
* * * * ** *
25879467 CGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTAATCA
25879516 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
25879557 GCTTTGGCTA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 39 0.49
50 2 0.03
51 38 0.48
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTAATCA
Found at i:25879539 original size:49 final size:51
Alignment explanation
Indices: 25879411--25879556 Score: 206
Period size: 51 Copynumber: 2.9 Consensus size: 51
25879401 TCTATTGTGA
*
25879411 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
** * * * * *
25879462 AATCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
25879511 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
25879557 GCTTTGGCTA
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 39 0.48
50 2 0.02
51 40 0.49
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
Found at i:25881374 original size:42 final size:42
Alignment explanation
Indices: 25881315--25881399 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
25881305 AGATGAAAGT
*
25881315 TTAGATTGTGATATACTTATTCATGTTTGTTTGGCCCTTATA
1 TTAGACTGTGATATACTTATTCATGTTTGTTTGGCCCTTATA
*
25881357 TTAGACTGTGATATACTTATTCATGTTTGTTTGGCCTTTATA
1 TTAGACTGTGATATACTTATTCATGTTTGTTTGGCCCTTATA
25881399 T
1 T
25881400 GATATTATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.21, C:0.12, G:0.16, T:0.51
Consensus pattern (42 bp):
TTAGACTGTGATATACTTATTCATGTTTGTTTGGCCCTTATA
Found at i:25884860 original size:27 final size:27
Alignment explanation
Indices: 25884822--25884881 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
25884812 TAATGCTTGT
*
25884822 TGTTACATGAATTGATTGTTAAATTAC
1 TGTTACATGAATTGAGTGTTAAATTAC
25884849 TGTTACATGAATTGAGTGTTAAATTAC
1 TGTTACATGAATTGAGTGTTAAATTAC
25884876 TGTTAC
1 TGTTAC
25884882 CTGGGTTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (27 bp):
TGTTACATGAATTGAGTGTTAAATTAC
Found at i:25885257 original size:50 final size:50
Alignment explanation
Indices: 25885130--25885327 Score: 227
Period size: 50 Copynumber: 4.0 Consensus size: 50
25885120 ATCTCTTGTG
* * *
25885130 AGGTCACATTTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * ** *
25885181 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
25885231 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGGGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
** * *
25885281 -GGTTGCATGTGTAGTACTAAGTGCAGGCTAGTATGCGTACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
25885328 CTTTGGCTAT
Statistics
Matches: 123, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 40 0.33
50 45 0.37
51 38 0.31
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:25891438 original size:20 final size:20
Alignment explanation
Indices: 25891400--25891440 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
25891390 TTTATCCAAA
25891400 AACATCTTATTACAGTCAAT
1 AACATCTTATTACAGTCAAT
*
25891420 AACAT-TTATTCACATTCAAT
1 AACATCTTATT-ACAGTCAAT
25891440 A
1 A
25891441 TGTACTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (20 bp):
AACATCTTATTACAGTCAAT
Found at i:25892842 original size:45 final size:47
Alignment explanation
Indices: 25892784--25892888 Score: 128
Period size: 45 Copynumber: 2.3 Consensus size: 47
25892774 TGAGCTGATG
* *
25892784 AATAGTAAGCTCTAATGAGT-TGAAACGGTAAGCTCTA-TCAAGCT-AA
1 AATAGTAAGCTCTAATGA-TATGAAAAGGTAAGATCTAGT-AAGCTAAA
* *
25892830 AA-AGTAAGCTCTATTGATATGAAAAGGTAAGATCTAGTGAGCTAAA
1 AATAGTAAGCTCTAATGATATGAAAAGGTAAGATCTAGTAAGCTAAA
25892876 AATAGTAAGCTCT
1 AATAGTAAGCTCT
25892889 TACGAGCTGA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
44 1 0.02
45 33 0.65
46 7 0.14
47 10 0.20
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (47 bp):
AATAGTAAGCTCTAATGATATGAAAAGGTAAGATCTAGTAAGCTAAA
Found at i:25892859 original size:23 final size:22
Alignment explanation
Indices: 25892788--25892865 Score: 59
Period size: 23 Copynumber: 3.5 Consensus size: 22
25892778 CTGATGAATA
* *
25892788 GTAAGCTCTAATGAGTTGAAACG
1 GTAAGCTCTATTGA-TTGAAAAG
** * *
25892811 GTAAGCTCTATCAAGCT-AAAAA
1 GTAAGCTCTATTGA-TTGAAAAG
25892833 GTAAGCTCTATTGATATGAAAAG
1 GTAAGCTCTATTGAT-TGAAAAG
*
25892856 GTAAGATCTA
1 GTAAGCTCTA
25892866 GTGAGCTAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
22 16 0.38
23 26 0.62
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.27
Consensus pattern (22 bp):
GTAAGCTCTATTGATTGAAAAG
Found at i:25892877 original size:23 final size:22
Alignment explanation
Indices: 25892824--25892877 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
25892814 AGCTCTATCA
* *
25892824 AGCTAAAAAGTAAGCTCTATTG
1 AGCTAAAAAGTAAGATCTAGTG
** *
25892846 ATATGAAAAGGTAAGATCTAGTG
1 AGCT-AAAAAGTAAGATCTAGTG
25892869 AGCTAAAAA
1 AGCTAAAAA
25892878 TAGTAAGCTC
Statistics
Matches: 23, Mismatches: 8, Indels: 2
0.70 0.24 0.06
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.24
Consensus pattern (22 bp):
AGCTAAAAAGTAAGATCTAGTG
Found at i:25894451 original size:43 final size:43
Alignment explanation
Indices: 25894390--25894476 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
25894380 TTAAAAAAAT
* *
25894390 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCATAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGACGCTTTTCCCACAAAC
*
25894433 GCCGCTAAATGTCATGACCTTTAGCGACGCTTTTCCCACAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGACGCTTTTCCCACAAAC
25894476 G
1 G
25894477 ACCTTTAGCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGGTCATGACCTTTAGCGACGCTTTTCCCACAAAC
Found at i:25894682 original size:19 final size:21
Alignment explanation
Indices: 25894641--25894688 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
25894631 TTAAAATTTT
25894641 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
25894662 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
25894681 AACTAAAA
1 AACTAAAA
25894689 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:25898427 original size:29 final size:29
Alignment explanation
Indices: 25898342--25898441 Score: 148
Period size: 29 Copynumber: 3.4 Consensus size: 29
25898332 AATTTTAAAT
*
25898342 TTTTAAGTTTTTCATTTTTTAA-TTTTTAA
1 TTTTAA-TTTTTAATTTTTTAATTTTTTAA
25898371 GTTTCTAATTTTTAATTTTTTAATTTTTTAA
1 -TTT-TAATTTTTAATTTTTTAATTTTTTAA
25898402 TTTTAATTTTTAATTTTTTAATTTTTTAA
1 TTTTAATTTTTAATTTTTTAATTTTTTAA
*
25898431 TTTTTATTTTT
1 TTTTAATTTTT
25898442 TGAGTTTATT
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
29 36 0.55
30 20 0.30
31 10 0.15
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (29 bp):
TTTTAATTTTTAATTTTTTAATTTTTTAA
Found at i:25898441 original size:23 final size:22
Alignment explanation
Indices: 25898330--25898442 Score: 140
Period size: 23 Copynumber: 5.1 Consensus size: 22
25898320 CCACTATTGA
*
25898330 TTAATTTTAAATTTTTAAGTTTT
1 TTAATTTTTAATTTTTAA-TTTT
* * *
25898353 TCATTTTTTAATTTTTAAGTTT
1 TTAATTTTTAATTTTTAATTTT
*
25898375 CTAATTTTTAATTTTTTAATTTT
1 TTAATTTTTAA-TTTTTAATTTT
25898398 TTAA-TTTTAATTTTTAATTTT
1 TTAATTTTTAATTTTTAATTTT
25898419 TTAATTTTTTAATTTTT-ATTTT
1 TTAA-TTTTTAATTTTTAATTTT
25898441 TT
1 TT
25898443 GAGTTTATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.19
22 24 0.31
23 39 0.50
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTAATTTTTAATTTTTAATTTT
Found at i:25898442 original size:7 final size:7
Alignment explanation
Indices: 25898349--25898459 Score: 73
Period size: 7 Copynumber: 15.4 Consensus size: 7
25898339 AATTTTTAAG
*
25898349 TTTTTCA
1 TTTTTTA
25898356 TTTTTTAA
1 TTTTTT-A
*
25898364 TTTTTAA
1 TTTTTTA
* *
25898371 GTTTCTAA
1 -TTTTTTA
*
25898379 TTTTTAA
1 TTTTTTA
25898386 TTTTTTAA
1 TTTTTT-A
25898394 TTTTTTA
1 TTTTTTA
* *
25898401 ATTTTAA
1 TTTTTTA
*
25898408 TTTTTAA
1 TTTTTTA
25898415 TTTTTTAA
1 TTTTTT-A
25898423 TTTTTTA
1 TTTTTTA
*
25898430 ATTTTTA
1 TTTTTTA
25898437 TTTTTTGA
1 TTTTTT-A
*
25898445 --GTTTA
1 TTTTTTA
25898450 TTTTTTA
1 TTTTTTA
25898457 TTT
1 TTT
25898460 CGGTTTAATG
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
5 1 0.01
6 3 0.04
7 53 0.63
8 27 0.32
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.73
Consensus pattern (7 bp):
TTTTTTA
Found at i:25898442 original size:8 final size:8
Alignment explanation
Indices: 25898334--25898435 Score: 124
Period size: 8 Copynumber: 13.4 Consensus size: 8
25898324 TATTGATTAA
*
25898334 TTTTAAAT
1 TTTTAATT
*
25898342 TTTTAAGT
1 TTTTAATT
*
25898350 TTTTCATT
1 TTTTAATT
25898358 TTTTAA-T
1 TTTTAATT
*
25898365 TTTTAAGT
1 TTTTAATT
*
25898373 TTCTAA-T
1 TTTTAATT
25898380 TTTTAATT
1 TTTTAATT
25898388 TTTTAATT
1 TTTTAATT
25898396 TTTTAA--
1 TTTTAATT
25898402 TTTTAA-T
1 TTTTAATT
25898409 TTTTAATT
1 TTTTAATT
25898417 TTTTAATT
1 TTTTAATT
25898425 TTTTAATT
1 TTTTAATT
25898433 TTT
1 TTT
25898436 ATTTTTTGAG
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
6 6 0.07
7 19 0.23
8 59 0.70
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTTAATT
Found at i:25898442 original size:15 final size:15
Alignment explanation
Indices: 25898330--25898435 Score: 128
Period size: 15 Copynumber: 7.1 Consensus size: 15
25898320 CCACTATTGA
*
25898330 TTAA-TTTTAAATTT
1 TTAATTTTTAATTTT
*
25898344 TTAAGTTTTTCATTTT
1 TTAA-TTTTTAATTTT
*
25898360 TTAATTTTTAAGTTT
1 TTAATTTTTAATTTT
*
25898375 CTAATTTTTAATTTT
1 TTAATTTTTAATTTT
25898390 TTAATTTTTTAA--TT
1 TTAA-TTTTTAATTTT
25898404 TTAATTTTTAATTTT
1 TTAATTTTTAATTTT
25898419 TTAATTTTTTAATTTT
1 TTAA-TTTTTAATTTT
25898435 T
1 T
25898436 ATTTTTTGAG
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
13 7 0.09
14 10 0.13
15 31 0.39
16 31 0.39
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (15 bp):
TTAATTTTTAATTTT
Found at i:25899009 original size:15 final size:15
Alignment explanation
Indices: 25898986--25899036 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
25898976 ATACCCATGG
*
25898986 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
25899001 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
25899016 CTAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
25899030 CCTTAAA
1 CCATAAA
25899037 TATTAAACCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:25899336 original size:41 final size:41
Alignment explanation
Indices: 25899290--25899575 Score: 340
Period size: 41 Copynumber: 7.0 Consensus size: 41
25899280 GGGGTTATAT
* * *
25899290 GACTTTTAGCAGTGTTTTACTAGAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
* * *
25899331 GACTTTTAGCGGCGTTTTACTAGAAACGCCACTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
*
25899372 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCT
1 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
*
25899413 GACTTTTAGCGGCGTTTTACCAGAAGTGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
* * * *
25899454 GACTTTTCGCGGTGTTTTACCAGAAGCGCCGCTATTTCTCT
1 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
* * * * **
25899495 GACTTTTAGTGGCATTTTAACAAAAAATGCCGCTATTGCT-C
1 GACTTTTAGCGGCGTTTT-ACCAGAAGCGCCGCTATTGCTCC
* * * * **
25899536 TATTTTTAGCTGCGTTTTACCAAAAATGCCGCTATTGCTC
1 GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTC
25899576 TATATTTTAC
Statistics
Matches: 212, Mismatches: 31, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
40 20 0.09
41 176 0.83
42 16 0.08
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
Found at i:25903139 original size:114 final size:114
Alignment explanation
Indices: 25902934--25903159 Score: 296
Period size: 114 Copynumber: 2.0 Consensus size: 114
25902924 TTCATCGGTG
* *** *
25902934 TAGCTATCATTGAAAAACCTTTTACAAAACGTTGATAATAGCCAGCTAATCCTAGAAAACTTCTG
1 TAGCAATCATTGAAAAACCTTTTACAAAACACAGATAATAGCCAGCTAATCCCAGAAAACTTCTG
*
25902999 ACTTTAGACAAGCTTCTTAGAGGTTTCCAGTCAACAACTACTAAAATAT
66 ACTTGAGACAAGCTTCTTAGAGGTTTCCAGTCAACAACTACTAAAATAT
* *
25903048 TAGCAATCATTGAAAATCCTTTTACTAAACACAGATAATAGCCAGCTAA-CCGCAGAAAACTTCT
1 TAGCAATCATTGAAAAACCTTTTACAAAACACAGATAATAGCCAGCTAATCC-CAGAAAACTTCT
* * * *
25903112 GACTTCGA-ACATA-TTTCTTGGTGGTTTCCAGTCAACAACTACTGAAAT
65 GACTT-GAGACA-AGCTTCTTAGAGGTTTCCAGTCAACAACTACTAAAAT
25903160 CTTACTCGGA
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
113 2 0.02
114 93 0.96
115 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (114 bp):
TAGCAATCATTGAAAAACCTTTTACAAAACACAGATAATAGCCAGCTAATCCCAGAAAACTTCTG
ACTTGAGACAAGCTTCTTAGAGGTTTCCAGTCAACAACTACTAAAATAT
Found at i:25904298 original size:18 final size:17
Alignment explanation
Indices: 25904272--25904305 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25904262 ACTCAACAAG
25904272 TAAACTCTTACTAGACAC
1 TAAACTCTTAC-AGACAC
*
25904290 TAAATTCTTACAGACA
1 TAAACTCTTACAGACA
25904306 TATGAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
TAAACTCTTACAGACAC
Found at i:25935357 original size:68 final size:67
Alignment explanation
Indices: 25935285--25935461 Score: 173
Period size: 67 Copynumber: 2.6 Consensus size: 67
25935275 CATCATGTGT
* * * *
25935285 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
25935347 ATGTAG
62 ATGTAG
** * *
25935353 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
25935418 AG
66 AG
* * * * *
25935420 ACAAGAGAGCTACGAGATA-ATTTGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
25935462 TACTGAGTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 20 0.22
65 7 0.08
66 23 0.25
67 30 0.32
68 13 0.14
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:25935390 original size:64 final size:63
Alignment explanation
Indices: 25935309--25935492 Score: 192
Period size: 67 Copynumber: 2.9 Consensus size: 63
25935299 AGACATTATG
*
25935309 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
25935372 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
25935437 TA
62 TA
* * * * *
25935439 ATTTGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
25935493 CAAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 20 0.20
67 30 0.31
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:25946727 original size:34 final size:34
Alignment explanation
Indices: 25946689--25946755 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
25946679 ATATGTATGC
25946689 TTGATATGGTTAGATTGAATTATGGTAAACATAA
1 TTGATATGGTTAGATTGAATTATGGTAAACATAA
*
25946723 TTGATATGGTTAGGTTGAATTATGGTAAACATA
1 TTGATATGGTTAGATTGAATTATGGTAAACATA
25946756 TGTGTCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (34 bp):
TTGATATGGTTAGATTGAATTATGGTAAACATAA
Found at i:25955838 original size:26 final size:27
Alignment explanation
Indices: 25955809--25955868 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
25955799 CCACATATAT
*
25955809 ATATCTG-TTCTGGTGGCCTAGCCACA
1 ATATCTGTTTCTGGTGACCTAGCCACA
* * *
25955835 ATATCTGTTTCTGGTGACTTCGTCACA
1 ATATCTGTTTCTGGTGACCTAGCCACA
25955862 ATATCTG
1 ATATCTG
25955869 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTTTCTGGTGACCTAGCCACA
Found at i:25959913 original size:9 final size:9
Alignment explanation
Indices: 25959899--25959925 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
25959889 TATAGACACC
25959899 TATTATTTT
1 TATTATTTT
25959908 TATTATTTT
1 TATTATTTT
25959917 TATTATTTT
1 TATTATTTT
25959926 ATTTTTATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TATTATTTT
Found at i:25968714 original size:16 final size:16
Alignment explanation
Indices: 25968682--25968714 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25968672 ATTATCTATC
*
25968682 TTATTTTATTTTATTT
1 TTATTTTATTATATTT
25968698 TTATTTTATTA-ATTT
1 TTATTTTATTATATTT
25968713 TT
1 TT
25968715 GAAGATTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTTATTATATTT
Found at i:25980578 original size:97 final size:97
Alignment explanation
Indices: 25980471--25980647 Score: 245
Period size: 97 Copynumber: 1.8 Consensus size: 97
25980461 ACATCTAAGT
* *
25980471 CGATGTCATGT-CCAAGACAGGTCTTACA-TAGATTTCCATAC-ATCGAG-GCCGATGCCATGTC
1 CGATGCCATGTCCCAA-ACAGGTCTTACACTAGATCT-CAT-CGATCG-GTGCCGATGCCATGTC
*
25980532 CCAGATAGGTCTTACACTAGATTGCGATCTTGAGGC
62 CCAGACAGGTCTTACACTAGATTGCGATCTTGAGGC
* *
25980568 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCGATCGGTGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACAGGTCTTACACTAGATCTCATCGATCGGTGCCGATGCCATGTCCCAG
25980633 ACAGGTCTTACACTA
66 ACAGGTCTTACACTA
25980648 CCACACACAT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
96 2 0.03
97 61 0.86
98 8 0.11
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (97 bp):
CGATGCCATGTCCCAAACAGGTCTTACACTAGATCTCATCGATCGGTGCCGATGCCATGTCCCAG
ACAGGTCTTACACTAGATTGCGATCTTGAGGC
Found at i:25980579 original size:48 final size:47
Alignment explanation
Indices: 25980471--25980647 Score: 198
Period size: 49 Copynumber: 3.7 Consensus size: 47
25980461 ACATCTAAGT
* *
25980471 CGATGTCATGTCCAAGACAGGTCTTACA-TAGATTTCCATACATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGA-TT-CAT-CATCGAGGC
* *
25980520 CGATGCCATGTCCCAGATAGGTCTTACACTAGATTGCGATC-TTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGATT-C-ATCATCGAGGC
* * *
25980568 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCGATCG-GTGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGAT-TCATC-ATCGAG-GC
25980617 CGATGCCATGTCCCAGACAGGTCTTACACTA
1 CGATGCCATGTCCCAGACAGGTCTTACACTA
25980648 CCACACACAT
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
47 3 0.03
48 38 0.35
49 63 0.57
50 6 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGATTCATCATCGAGGC
Found at i:25985798 original size:46 final size:46
Alignment explanation
Indices: 25985731--25985902 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
25985721 AACCCGCCCC
*
25985731 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
25985777 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
25985825 TCA-CGAACTCGGACTTAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
25985870 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
25985903 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:25985851 original size:93 final size:93
Alignment explanation
Indices: 25985736--25985906 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
25985726 GCCCCTAAGT
* *
25985736 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25985801 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
25985829 GAACTCGGACTTAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25985894 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25985907 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:25998009 original size:46 final size:44
Alignment explanation
Indices: 25997951--25998119 Score: 216
Period size: 46 Copynumber: 3.7 Consensus size: 44
25997941 TCTCGAGGCT
25997951 GATGCATGTCCCAGACATGTCTTACACTAGCTGTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TC-TCTCAATGCC
*
25997997 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TC-TCTCAATGCC
* *
25998043 GATGCATATCCCAGACATGTCTTACACTGGC-TCTCAT-AATGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTCTC-TCAA--T-GCC
*
25998089 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
25998120 ACACAATCAC
Statistics
Matches: 110, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
43 4 0.04
44 3 0.03
45 1 0.01
46 102 0.93
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTCTCTCAATGCC
Found at i:25998036 original size:92 final size:93
Alignment explanation
Indices: 25997925--25998119 Score: 238
Period size: 92 Copynumber: 2.1 Consensus size: 93
25997915 AGATAGGTCC
* * * *
25997925 TACACTAGCTTCTATATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTGTCGTC-
1 TACACTAGCTTCTACATCTCAAGGCCGATGCATATCCCAGACATGTCTTACACTAGC--TC-TCA
25997989 TCAA-T-GCCGATGCATGTCCCAAACATGTCT
63 T-AAGTGGCCGATGCATGTCCCAAACATGTCT
* *
25998019 TACACTAGC-TCT-CATCTCAATGCCGATGCATATCCCAGACATGTCTTACACTGGCTCTCATAA
1 TACACTAGCTTCTACATCTCAAGGCCGATGCATATCCCAGACATGTCTTACACTAGCTCTCATAA
* *
25998082 TGTGGCCGATGCATGTCCTAGACATGTCT
66 -GTGGCCGATGCATGTCCCAAACATGTCT
25998111 TACACTAGC
1 TACACTAGC
25998120 ACACAATCAC
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
89 4 0.04
90 3 0.03
91 1 0.01
92 69 0.78
93 3 0.03
94 9 0.10
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (93 bp):
TACACTAGCTTCTACATCTCAAGGCCGATGCATATCCCAGACATGTCTTACACTAGCTCTCATAA
GTGGCCGATGCATGTCCCAAACATGTCT
Found at i:26003633 original size:26 final size:26
Alignment explanation
Indices: 26003604--26003689 Score: 163
Period size: 26 Copynumber: 3.3 Consensus size: 26
26003594 TGATACAAAT
26003604 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26003630 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26003656 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26003682 TGATAATG
1 TGATAATG
26003690 ATGTTCCATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26003695 original size:16 final size:16
Alignment explanation
Indices: 26003674--26003705 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26003664 GGTTAGGTAA
26003674 ATGTTCCATGATAATG
1 ATGTTCCATGATAATG
26003690 ATGTTCCATGATAATG
1 ATGTTCCATGATAATG
26003706 GGTTAGGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (16 bp):
ATGTTCCATGATAATG
Found at i:26003707 original size:42 final size:42
Alignment explanation
Indices: 26003648--26003727 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
26003638 GGTTAGGTAA
*
26003648 ATGTTTCATGATAATGGGTTAGGTAAATGTTCCATGATAATG
1 ATGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATG
26003690 ATGTTCCATGATAATGGGTTAGGTAAATGTTCCATGAT
1 ATGTTCCATGATAATGGGTTAGGTAAATGTTCCATGAT
26003728 TGGAATTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.38
Consensus pattern (42 bp):
ATGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATG
Found at i:26010677 original size:26 final size:26
Alignment explanation
Indices: 26010648--26010729 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
26010638 TGATACAAAT
26010648 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26010674 TGATAATCGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26010700 TGATAATGGGTTAGGTAAATGTGCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26010726 TGAT
1 TGAT
26010730 TGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26015470 original size:25 final size:25
Alignment explanation
Indices: 26015441--26015492 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
26015431 AAGAATAATT
** *
26015441 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCATAATAAA
*
26015466 TGAATATCCGATATTGCATAGTAAA
1 TGAATATCCGATATTGCATAATAAA
26015491 TG
1 TG
26015493 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (25 bp):
TGAATATCCGATATTGCATAATAAA
Found at i:26017120 original size:42 final size:43
Alignment explanation
Indices: 26017012--26017124 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
26017002 AGCTCGTACA
* * * * *
26017012 ATGCCAATGTCCCAAACATGGTCTTACATGTACTCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
26017055 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAAATATCG
*
26017097 TTGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
26017125 CATAAATCAT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 34 0.57
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
Found at i:26017132 original size:43 final size:44
Alignment explanation
Indices: 26017012--26017148 Score: 117
Period size: 43 Copynumber: 3.2 Consensus size: 44
26017002 AGCTCGTACA
* * * ** *
26017012 ATGCCAATGTCCCAAACATGGTCTTACATGT-ACTCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCAAATATCG
26017055 ATGCC-ACTGTCCCAGACAG-GGTCTT--ACATGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACAT-AAATCAAATATCG
* *
26017097 TTGCCAACGTCCCAGACGTGGTCTTACACATAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCA-AATATCG
26017141 ATGCCAAC
1 ATGCCAAC
26017149 ATCCTAGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
41 3 0.04
42 22 0.29
43 35 0.47
44 15 0.20
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCAAATATCG
Found at i:26020720 original size:47 final size:47
Alignment explanation
Indices: 26020669--26021015 Score: 523
Period size: 47 Copynumber: 7.4 Consensus size: 47
26020659 GATGTACAAG
* * *
26020669 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
26020716 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
26020763 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
26020810 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
26020857 GTGTATATATGTGATAAGGTCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
26020904 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* ** * *
26020951 GTGTATATATGAGATAAAACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
26020998 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
26021016 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 278 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:26024591 original size:40 final size:40
Alignment explanation
Indices: 26024480--26024694 Score: 219
Period size: 40 Copynumber: 5.5 Consensus size: 40
26024470 CGGATGATAA
* * *
26024480 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* * *
26024520 CCGGGCTAAG-CCCGAAGGCAATT-GTGTGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * * *
26024559 CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
26024599 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
26024639 CC-GGCTATGTCCCGAA-GCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
26024677 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26024695 TACTTGGCTT
Statistics
Matches: 148, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
37 2 0.01
38 30 0.20
39 44 0.30
40 72 0.49
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:26024645 original size:79 final size:79
Alignment explanation
Indices: 26024480--26024668 Score: 226
Period size: 79 Copynumber: 2.4 Consensus size: 79
26024470 CGGATGATAA
* * * *
26024480 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
* *
26024545 GTGAGTTATTATAC
66 GCGAGTTACTATAC
* *
26024559 CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-ATT
1 CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
*
26024622 GGTGCGAGTTACTATAT
64 -GTGCGAGTTACTATAC
26024639 CC-GGCT-ATGTCCCGAA-GCATTCGAGCGAGT
1 CCGGGCTAAT-TCCCGAAGGCATTCGAGCGAGT
26024669 AGCTATATCC
Statistics
Matches: 97, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 19 0.20
79 54 0.56
80 24 0.25
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
GCGAGTTACTATAC
Found at i:26032656 original size:39 final size:40
Alignment explanation
Indices: 26032571--26032760 Score: 181
Period size: 39 Copynumber: 4.8 Consensus size: 40
26032561 CGGATGATAA
* * ** * *
26032571 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA-C
*
26032611 CTGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTATTATAC
* *
26032650 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTAT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAC
* * * *
26032689 TCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAC
* * * *
26032729 CCGAGCTATGTCCCGAAGCCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
26032761 AGCTATATCC
Statistics
Matches: 125, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 63 0.50
40 62 0.50
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAC
Found at i:26032678 original size:40 final size:40
Alignment explanation
Indices: 26032613--26032760 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 40
26032603 GACTAATTCT
*
26032613 GGGCTAA-GCCCGAAGGCAATT-GTGCGAGTTATTATACCC
1 GGGCTAATTCCCGAAGGC-ATTCGTGCGAGTTATTATACCC
**
26032652 GGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTAT-GTC
1 GGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATACCC
* * * *
26032691 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATACCC
* * *
26032731 GAGCT-ATGTCCCGAAGCCATTCGAGCGAGT
1 GGGCTAAT-TCCCGAAGGCATTCGTGCGAGT
26032761 AGCTATATCC
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 45 0.49
40 47 0.51
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATACCC
Found at i:26032704 original size:79 final size:79
Alignment explanation
Indices: 26032571--26032760 Score: 217
Period size: 79 Copynumber: 2.4 Consensus size: 79
26032561 CGGATGATAA
* * * *
26032571 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAATTCTGGGCTAAGCCCGAAGGCAATT-G
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCTGGGCTAAGCCCGAAGGC-ATTGG
*
26032635 TGCGAGTTATTATAC
65 TGCGAGTTACTATAC
* *
26032650 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTA-TTATGTC-GGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAAT-TCTGGGCTAAG-CCCGAAGGCATTG
*
26032713 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAC
* * *
26032729 CCGAGCT-ATGTCCCGAAGCCATTCGAGCGAGT
1 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGT
26032761 AGCTATATCC
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 16 0.17
79 80 0.83
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTGGT
GCGAGTTACTATAC
Found at i:26032767 original size:40 final size:40
Alignment explanation
Indices: 26032615--26032785 Score: 136
Period size: 39 Copynumber: 4.3 Consensus size: 40
26032605 CTAATTCTGG
* * * * *
26032615 GCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATACCCGG
1 GCTAAGTCCCGAA-GCCATTCGAGCGAGTTACTATATCCGA
* * * * * *
26032654 GCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT-CGG
1 GCTAAGTCCCGAAGCCATTCGAGCGAGTTACTATATCCGA
* * *
26032693 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGA
1 GCTAAGTCCCGAAGCCATTCGAGCGAGTTACTATATCCGA
*
26032733 GCTATGTCCCGAAGCCATTCGAGCGAG-TAGCTATATCCGA
1 GCTAAGTCCCGAAGCCATTCGAGCGAGTTA-CTATATCCGA
* *
26032773 -TTAAATCCCGAAG
1 GCTAAGTCCCGAAG
26032786 GTACTTTGCT
Statistics
Matches: 111, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 56 0.50
40 55 0.50
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
GCTAAGTCCCGAAGCCATTCGAGCGAGTTACTATATCCGA
Found at i:26032782 original size:79 final size:79
Alignment explanation
Indices: 26032621--26032786 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
26032611 CTGGGCTAAG
* * * * *
26032621 CCCGAAGGCAATTGTGCGAGTTATTATACCCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATT
1 CCCGAAGGCAATTGTGCGAGTTACTATACCCGAGCTAATTCCCGAAGCCATTCGAGCGAGTTACT
* * * *
26032686 ATGTCGGGCTAAGT
66 ATATCCGACTAAAT
*
26032700 CCCGAAGGC-ATTGGTGCGAGTTACTATATCCGAGCT-ATGTCCCGAAGCCATTCGAGCGAG-TA
1 CCCGAAGGCAATT-GTGCGAGTTACTATACCCGAGCTAAT-TCCCGAAGCCATTCGAGCGAGTTA
*
26032762 GCTATATCCGATTAAAT
64 -CTATATCCGACTAAAT
26032779 CCCGAAGG
1 CCCGAAGG
26032787 TACTTTGCTT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 7 0.10
79 66 0.90
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCCGAAGGCAATTGTGCGAGTTACTATACCCGAGCTAATTCCCGAAGCCATTCGAGCGAGTTACT
ATATCCGACTAAAT
Found at i:26044130 original size:25 final size:25
Alignment explanation
Indices: 26044101--26044152 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
26044091 AAGAATAATT
26044101 TGAATATCCGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
26044126 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
26044151 TG
1 TG
26044153 TCAAGCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:26045406 original size:16 final size:17
Alignment explanation
Indices: 26045355--26045407 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 17
26045345 AATGAATTGA
26045355 ATTGTATTGAATTGAGAAT
1 ATTGTATTG-ATTGA-AAT
*
26045374 ATATGTGATTAATTGAAAT
1 AT-TGT-ATTGATTGAAAT
26045393 -TTGTATTGATTGAAA
1 ATTGTATTGATTGAAA
26045408 ACTAGAAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
16 10 0.33
17 3 0.10
18 1 0.03
19 5 0.17
20 8 0.27
21 3 0.10
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (17 bp):
ATTGTATTGATTGAAAT
Found at i:26045885 original size:23 final size:23
Alignment explanation
Indices: 26045852--26045903 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
26045842 GGCTTTGCCG
*
26045852 ATCAGGAACTTTTTGTGTCGTAT
1 ATCAGGAACTTTATGTGTCGTAT
*
26045875 ATCAGGTACTTTATGTGTCGTAT
1 ATCAGGAACTTTATGTGTCGTAT
*
26045898 TTCAGG
1 ATCAGG
26045904 CACCTCGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.42
Consensus pattern (23 bp):
ATCAGGAACTTTATGTGTCGTAT
Found at i:26045914 original size:23 final size:23
Alignment explanation
Indices: 26045865--26045936 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 23
26045855 AGGAACTTTT
* * * *
26045865 TGTGTCGTATATCAGGTACTTTA
1 TGTGTCGTATTTCAGGCACCTCA
*
26045888 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCA
*
26045911 TGTGTCGT-TTT-AGGCA-CTTA
1 TGTGTCGTATTTCAGGCACCTCA
26045931 TGTGTC
1 TGTGTC
26045937 ATATACTGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
20 8 0.19
21 5 0.12
22 3 0.07
23 26 0.62
ACGTcount: A:0.15, C:0.18, G:0.25, T:0.42
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCA
Found at i:26048776 original size:11 final size:11
Alignment explanation
Indices: 26048760--26048784 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26048750 ATATCTAGAA
26048760 TTCTCTTCATT
1 TTCTCTTCATT
26048771 TTCTCTTCATT
1 TTCTCTTCATT
26048782 TTC
1 TTC
26048785 ATCAGCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:26050059 original size:25 final size:25
Alignment explanation
Indices: 26050038--26050088 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26050028 AAGAATATTG
*
26050038 GAATATTTGATATTGCCTAATAAAT
1 GAATATCTGATATTGCCTAATAAAT
* *
26050063 GAATATCTGATATTGCTTAGTAAAT
1 GAATATCTGATATTGCCTAATAAAT
26050088 G
1 G
26050089 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (25 bp):
GAATATCTGATATTGCCTAATAAAT
Found at i:26050116 original size:17 final size:17
Alignment explanation
Indices: 26050094--26050127 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26050084 AAATGTCAAG
26050094 CCAAATATAAAAAAAAT
1 CCAAATATAAAAAAAAT
*
26050111 CCAAATATAAGAAAAAT
1 CCAAATATAAAAAAAAT
26050128 ATGTTATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (17 bp):
CCAAATATAAAAAAAAT
Found at i:26051417 original size:21 final size:21
Alignment explanation
Indices: 26051387--26051435 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
26051377 TATCACAAAC
26051387 CACATA-ATTCATATACATTT-
1 CACATATATTCA-ATACATTTG
* *
26051407 CCCATATATTCAATTCATTTG
1 CACATATATTCAATACATTTG
26051428 CACATATA
1 CACATATA
26051436 GCATATTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.39
Consensus pattern (21 bp):
CACATATATTCAATACATTTG
Found at i:26051733 original size:42 final size:42
Alignment explanation
Indices: 26051629--26051784 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 42
26051619 CGTACAATGG
* * * *
26051629 CAACATCCCAGATGTGGTCTTACATGTAATCAAATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACACGAAATCAAATA-CGATGC
*
26051672 C-ACTGTCCTAGACAG-GGTCTTACACGAAATCAAATACGATGC
1 CAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATACGATGC
* *
26051714 CAACGTCCCAGACGTGGTCTTACACATAAATCATAAGT-CGATGT
1 CAACGTCCCAGACGTGGTCTTACAC-GAAATCA-AA-TACGATGC
* **
26051758 CAACGTCCCAGATGTATTCTTACACGA
1 CAACGTCCCAGACGTGGTCTTACACGA
26051785 TAACACATAT
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
CAACGTCCCAGACGTGGTCTTACACGAAATCAAATACGATGC
Found at i:26053046 original size:18 final size:18
Alignment explanation
Indices: 26053025--26053059 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26053015 TCTCAAGTGG
26053025 TAGTCGATTATCAACTCA
1 TAGTCGATTATCAACTCA
**
26053043 TAGTCTTTTATCAACTC
1 TAGTCGATTATCAACTC
26053060 TAACCATGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (18 bp):
TAGTCGATTATCAACTCA
Found at i:26054188 original size:9 final size:10
Alignment explanation
Indices: 26054159--26054188 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
26054149 TGCAGCTACA
26054159 CTTTCAACTC
1 CTTTCAACTC
26054169 CTTTCAACTC
1 CTTTCAACTC
26054179 CTTT-AACTC
1 CTTTCAACTC
26054188 C
1 C
26054189 ATCAGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (10 bp):
CTTTCAACTC
Found at i:26057862 original size:25 final size:26
Alignment explanation
Indices: 26057833--26057883 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26057823 CTTATTTCAT
26057833 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAATATAA
* *
26057858 TAAATCAAATATATTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAATATAA
26057884 AAAAAATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAATATAA
Found at i:26063064 original size:93 final size:93
Alignment explanation
Indices: 26062937--26063108 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
26062927 CGCCCATAAG
* *
26062937 CGAACTCGGACTCAACTCAATGAGCTCAGGCATTCGCATCCATAAGTTAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
26063002 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
26063030 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTC
26063094 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
26063109 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26063098 original size:46 final size:46
Alignment explanation
Indices: 26062930--26063105 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
26062920 TGTAACCCGC
* *
26062930 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
** * *
26062976 CCATAAGTTAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
26063026 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26063069 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26063106 TGCTCAATCA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.54
47 27 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26066673 original size:21 final size:21
Alignment explanation
Indices: 26066649--26066688 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26066639 AACAAAGAAG
* *
26066649 TTGAGGAAATTGAAAGGGGCT
1 TTGAAGAAATGGAAAGGGGCT
*
26066670 TTGAAGAAATGGAACGGGG
1 TTGAAGAAATGGAAAGGGG
26066689 ATTATCGTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.05, G:0.40, T:0.20
Consensus pattern (21 bp):
TTGAAGAAATGGAAAGGGGCT
Found at i:26071207 original size:104 final size:104
Alignment explanation
Indices: 26071027--26071250 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
26071017 TGTATATAAA
** * *
26071027 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
26071092 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
26071131 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
26071195 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
26071235 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
26071251 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:26071302 original size:71 final size:72
Alignment explanation
Indices: 26071169--26071320 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
26071159 TCATTGGTGG
* *
26071169 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
26071234 GAGGGGT
66 GAGGGGT
***
26071241 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
26071305 GAGGGGT
66 GAGGGGT
26071312 TGCTAAGTG
1 TGCTAAGTG
26071321 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:26078759 original size:104 final size:104
Alignment explanation
Indices: 26078579--26078802 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
26078569 TGTATATAAA
** * *
26078579 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
26078644 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
26078683 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
26078747 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
26078787 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
26078803 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:26078854 original size:71 final size:72
Alignment explanation
Indices: 26078721--26078872 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
26078711 TCATTGGTGG
* *
26078721 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
26078786 GAGGGGT
66 GAGGGGT
***
26078793 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
26078857 GAGGGGT
66 GAGGGGT
26078864 TGCTAAGTG
1 TGCTAAGTG
26078873 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:26081899 original size:21 final size:20
Alignment explanation
Indices: 26081867--26081907 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26081857 ATTCAAAAGG
26081867 ATAAAAAATATATA-TTTTT
1 ATAAAAAATATATAGTTTTT
26081886 ATAATAAAAGTATATAGTTTTT
1 ATAA-AAAA-TATATAGTTTTT
26081908 CTTTTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 4 0.21
21 6 0.32
22 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
ATAAAAAATATATAGTTTTT
Found at i:26084870 original size:91 final size:90
Alignment explanation
Indices: 26084750--26084935 Score: 363
Period size: 91 Copynumber: 2.1 Consensus size: 90
26084740 CTGCAGCAAT
26084750 CATTTTTCCATGATCCTGGTTTTTGAAGCATGCAGAAGCTACCAACAACCCCAATATATAACATA
1 CATTTTTCCATGATCCTGGTTTTTGAAGCATGCAGAAGCTACCAACAACCCCAATATATAACATA
26084815 GTTATATATTTGTTTCAAATACAAG
66 GTTATATATTTGTTTCAAATACAAG
26084840 CATTTTTCCATGATCGCTGGTTTTTGAAGCATGCAGAAGCTACCAACAACCCCAATATATAACAT
1 CATTTTTCCATGATC-CTGGTTTTTGAAGCATGCAGAAGCTACCAACAACCCCAATATATAACAT
26084905 AGTTATATATTTGTTTCAAATACAAG
65 AGTTATATATTTGTTTCAAATACAAG
26084931 CATTT
1 CATTT
26084936 AGTTAAGTAA
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 15 0.16
91 80 0.84
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (90 bp):
CATTTTTCCATGATCCTGGTTTTTGAAGCATGCAGAAGCTACCAACAACCCCAATATATAACATA
GTTATATATTTGTTTCAAATACAAG
Found at i:26086296 original size:8 final size:8
Alignment explanation
Indices: 26086285--26086322 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
26086275 TATATATATA
26086285 TTTATAAT
1 TTTATAAT
26086293 TTTATAAT
1 TTTATAAT
26086301 TTTATAA-
1 TTTATAAT
26086308 TTTATAAT
1 TTTATAAT
26086316 TTATATA
1 TT-TATA
26086323 TTATATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.25
8 17 0.61
9 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTTATAAT
Found at i:26086311 original size:7 final size:7
Alignment explanation
Indices: 26086279--26086320 Score: 57
Period size: 8 Copynumber: 5.6 Consensus size: 7
26086269 TTCTTTTATA
26086279 TATATATT
1 TATA-ATT
26086287 TATAATTT
1 TATAA-TT
26086295 TATAATTT
1 TATAA-TT
26086303 TATAATT
1 TATAATT
26086310 TATAATT
1 TATAATT
26086317 TATA
1 TATA
26086321 TATTATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.42
8 19 0.58
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATAATT
Found at i:26086329 original size:16 final size:16
Alignment explanation
Indices: 26086277--26086329 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
26086267 AGTTCTTTTA
26086277 TATATATATTTATA-AT
1 TATATA-ATTTATATAT
*
26086293 TTTATAATTT-TATAAT
1 TATATAATTTATAT-AT
26086309 T-TATAATTTATATAT
1 TATATAATTTATATAT
26086324 TATATA
1 TATATA
26086330 TTACATATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
14 2 0.06
15 15 0.47
16 15 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATATAATTTATATAT
Found at i:26086959 original size:31 final size:33
Alignment explanation
Indices: 26086915--26086976 Score: 76
Period size: 31 Copynumber: 1.9 Consensus size: 33
26086905 ACTTATATGC
* *
26086915 TACGCCAACAAATAATTTTAAAATT-ATAAAATA
1 TACGCCAACAAAT-ATATAAAAATTCATAAAATA
26086948 TACG-CAA-AAATATATAAAAATTCATAAAA
1 TACGCCAACAAATATATAAAAATTCATAAAA
26086977 ATAAAAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 9 0.35
31 10 0.38
32 3 0.12
33 4 0.15
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.27
Consensus pattern (33 bp):
TACGCCAACAAATATATAAAAATTCATAAAATA
Found at i:26102664 original size:23 final size:22
Alignment explanation
Indices: 26102638--26102681 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
26102628 CCCCATGCAA
26102638 TGCAACATA-ATATCATACATGGG
1 TGCAACATACATAT-A-ACATGGG
26102661 TGCAACATACATATAACATGG
1 TGCAACATACATATAACATGG
26102682 CATGCTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 10 0.50
24 4 0.20
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (22 bp):
TGCAACATACATATAACATGGG
Found at i:26102797 original size:27 final size:26
Alignment explanation
Indices: 26102721--26102893 Score: 152
Period size: 27 Copynumber: 6.4 Consensus size: 26
26102711 GAAAAAATCT
* * *
26102721 GTCATTTTACCTTACCGGGGTATTACA
1 GTCATTTTACCCTA-TGGGGTATTTCA
* *
26102748 GTCATTTTACCTTACAGGGGTATTTCA
1 GTCATTTTACCCTA-TGGGGTATTTCA
*
26102775 GTCATTTTACCCTATGGGAGTATTT-T
1 GTCATTTTACCCTATGGG-GTATTTCA
* **
26102801 GATCATTTTACCTTATGAGGGTATTTTG
1 G-TCATTTTACCCTATG-GGGTATTTCA
**
26102829 GTCATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATG-GGGTATTTCA
*
26102856 GTCATTTTACCCTATGAGAGTATTTC-
1 GTCATTTTACCCTATG-GGGTATTTCA
26102882 GATCATTTTACC
1 G-TCATTTTACC
26102894 ATATAAGGGT
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
26 5 0.04
27 123 0.94
28 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCA
Found at i:26102860 original size:81 final size:81
Alignment explanation
Indices: 26102722--26102904 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
26102712 AAAAAATCTG
* *
26102722 TCATTTTACCTTACCG-GGGTATTACAGTCATTTTACCTTACAGGGGTATTTCAGTCATTTTACC
1 TCATTTTACCTTA-TGAGGGTATTACAGTCATTTTACCCTACAGGGGTATTTCAGTCATTTTACC
* *
26102786 CTATGGGAGTATTTTGA
65 CTATGAGAGTATTTCGA
*** * **
26102803 TCATTTTACCTTATGAGGGTATTTTGGTCATTTTACCCTA-TGAGGGTATTTTGGTCATTTTACC
1 TCATTTTACCTTATGAGGGTATTACAGTCATTTTACCCTACAG-GGGTATTTCAGTCATTTTACC
26102867 CTATGAGAGTATTTCGA
65 CTATGAGAGTATTTCGA
* *
26102884 TCATTTTACCATATAAGGGTA
1 TCATTTTACCTTATGAGGGTA
26102905 AAATCATCAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 86 0.98
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (81 bp):
TCATTTTACCTTATGAGGGTATTACAGTCATTTTACCCTACAGGGGTATTTCAGTCATTTTACCC
TATGAGAGTATTTCGA
Found at i:26102903 original size:54 final size:53
Alignment explanation
Indices: 26102767--26102904 Score: 170
Period size: 54 Copynumber: 2.5 Consensus size: 53
26102757 CCTTACAGGG
* * *
26102767 GTATTTC-AGTCATTTTACCCTATGGGAGTATTTTGATCATTTTACCTTATGAGG
1 GTATTTCGA-TCATTTTACCCTATAGG-GTATTTTGATCATTTTACCCTATGAGA
* * *
26102821 GTATTTTGGTCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCCTATGAGA
1 GTATTTCGATCATTTTACCCTAT-AGGGTATTTTGATCATTTTACCCTATGAGA
*
26102875 GTATTTCGATCATTTTACCATATAAGGGTA
1 GTATTTCGATCATTTTACCCTAT-AGGGTA
26102905 AAATCATCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
54 70 0.97
55 2 0.03
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.43
Consensus pattern (53 bp):
GTATTTCGATCATTTTACCCTATAGGGTATTTTGATCATTTTACCCTATGAGA
Found at i:26102913 original size:27 final size:27
Alignment explanation
Indices: 26102884--26103144 Score: 337
Period size: 27 Copynumber: 9.7 Consensus size: 27
26102874 AGTATTTCGA
* * * * *
26102884 TCATTTTACCATATAAGGGTAAAATCA
1 TCATTTTATCACAAAAGGGCAAAATCG
26102911 TCATTTTATCACAAAAGGGCAAAATCG
1 TCATTTTATCACAAAAGGGCAAAATCG
26102938 TCATTTTATCACAAAAGGGCAAAATCG
1 TCATTTTATCACAAAAGGGCAAAATCG
* * *
26102965 TCATTTTATTACATAAA-GGAAAAATCA
1 TCATTTTATCACA-AAAGGGCAAAATCG
*
26102992 TCATTTTATCACAAAAGGG-AAAATCT
1 TCATTTTATCACAAAAGGGCAAAATCG
*
26103018 TCATTTTATCACAAAAAGGCAAAATCG
1 TCATTTTATCACAAAAGGGCAAAATCG
* * *
26103045 TCATTTTCTCACAAAAGGGAAAAATCA
1 TCATTTTATCACAAAAGGGCAAAATCG
*
26103072 TCATTTTATCACAAAAAGGCAAAATCG
1 TCATTTTATCACAAAAGGGCAAAATCG
* * *
26103099 TCATTTTATGACATAGGGGCAAAATCG
1 TCATTTTATCACAAAAGGGCAAAATCG
26103126 TCATTTTATCACATAAAGG
1 TCATTTTATCACA-AAAGG
26103145 TTCAAGTATG
Statistics
Matches: 203, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 27 0.13
27 170 0.84
28 6 0.03
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (27 bp):
TCATTTTATCACAAAAGGGCAAAATCG
Found at i:26102915 original size:54 final size:54
Alignment explanation
Indices: 26102802--26102918 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 54
26102792 GAGTATTTTG
* * * * * * *** *
26102802 ATCATTTTACCTTATGAGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTTG
1 ATCATTTTACCCTATGAGAGTATTTCGATCATTTTACCATATAAGGGTAAAATC
*
26102856 GTCATTTTACCCTATGAGAGTATTTCGATCATTTTACCATATAAGGGTAAAATC
1 ATCATTTTACCCTATGAGAGTATTTCGATCATTTTACCATATAAGGGTAAAATC
26102910 ATCATTTTA
1 ATCATTTTA
26102919 TCACAAAAGG
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (54 bp):
ATCATTTTACCCTATGAGAGTATTTCGATCATTTTACCATATAAGGGTAAAATC
Found at i:26107952 original size:26 final size:26
Alignment explanation
Indices: 26107916--26107967 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26107906 ACTACTGTTG
*
26107916 CTACTGTTACAATAATCTCCTATTAC
1 CTACTGTTACAATAATCTCATATTAC
26107942 CTACTGTTACAATAATCTCATATTAC
1 CTACTGTTACAATAATCTCATATTAC
26107968 ATTCACTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (26 bp):
CTACTGTTACAATAATCTCATATTAC
Found at i:26112658 original size:21 final size:19
Alignment explanation
Indices: 26112621--26112674 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
26112611 TACATTTTAT
* *
26112621 TTATAAATTTTATTATACA
1 TTATATATTTTATTATAAA
26112640 TTATATATTTTACTATATAAA
1 TTATATATTTTA-T-TATAAA
* *
26112661 TTACATTTTTTATT
1 TTATATATTTTATT
26112675 TTATTATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 12 0.41
20 2 0.07
21 15 0.52
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATATTTTATTATAAA
Found at i:26112674 original size:26 final size:24
Alignment explanation
Indices: 26112636--26112703 Score: 70
Period size: 26 Copynumber: 2.8 Consensus size: 24
26112626 AATTTTATTA
26112636 TACATTATATATTTTACTATATAAAT
1 TACATTATATATTTTA-T-TATAAAT
* *
26112662 TACATTTTTTATTTTATTATAAAT
1 TACATTATATATTTTATTATAAAT
26112686 T--ATGTAT-TATTTTATTAT
1 TACAT-TATATATTTTATTAT
26112704 TCATTAATTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
22 13 0.34
23 2 0.05
24 8 0.21
25 1 0.03
26 14 0.37
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (24 bp):
TACATTATATATTTTATTATAAAT
Found at i:26118617 original size:20 final size:20
Alignment explanation
Indices: 26118592--26118639 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
26118582 AATTCGAGTG
*
26118592 AATATTCTTTTATACCGTTC
1 AATATTCTTTTATACCGATC
26118612 AATATTCTTTTATACCGATC
1 AATATTCTTTTATACCGATC
26118632 AATATTCT
1 AATATTCT
26118640 GTTGACCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (20 bp):
AATATTCTTTTATACCGATC
Done.