Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 83 of 311
Found at i:26123171 original size:44 final size:43
Alignment explanation
Indices: 26123108--26123617 Score: 464
Period size: 44 Copynumber: 11.4 Consensus size: 43
26123098 ACAGATAGCC
* ** * * *
26123108 GATTTGGTATCTCTGTATTGTTAGAGAGCAGATTGAATATGACG
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAT-ACA
26123152 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAT-ACA
* * * *
26123196 GGTTTGGCATCTTTGTATTGATAGAGAGCAGGTCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATA-CA
* * * * *
26123240 GATGTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATGATA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAT-ACA
* * *
26123284 GATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAGTA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATA-CA
* * *
26123328 GATTTGACATCTTTGTATTGACAGAGAGCAGATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATA-CA
* *
26123372 AATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATA-CA
** * *
26123416 GATTTGGGGTCTCTATATTGACAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATA-CA
* * ** * *
26123460 GATTTGGCGTATCTTATTTCTATAAATATTGAGAGCAGATCAAAGATAGCA
1 GATTTGGC--ATC---TCTGTATTGACA--GAGAGCAGATCGAAGATA-CA
* * * *
26123511 GATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAAAGATAGA
1 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATACA
* *
26123554 -ATATGTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACA
1 GAT-T-TGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAT-ACA
* * *
26123599 GATGTGGCCTCTCCGTATT
1 GATTTGGCATCTCTGTATT
26123618 AGGCAAGGAG
Statistics
Matches: 393, Mismatches: 59, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
42 2 0.01
43 4 0.01
44 336 0.85
45 3 0.01
46 10 0.03
49 9 0.02
51 29 0.07
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATACA
Found at i:26123253 original size:88 final size:88
Alignment explanation
Indices: 26123093--26123639 Score: 535
Period size: 88 Copynumber: 6.1 Consensus size: 88
26123083 AGGACAATAT
* * * * * ** * *
26123093 AGATCACAGATAGCCGATTTGGTATCTCTGTATTGTTAGAGAGCAGATTGAATAT-GACGGATTT
1 AGATCAAAGATAACAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAG-CAGATTT
*
26123157 GGCATCTCTGTATTGACAGAGAGC
65 GGCGTCTCTGTATTGACAGAGAGC
* * * * * *
26123181 AGATCGAAGATAACAGGTTTGGCATCTTTGTATTGATAGAGAGCAGGTCGAAGATAGCAGATGTG
1 AGATCAAAGATAACAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAGCAGATTTG
*
26123246 GCGTCTCTGTATTGACAGAGAAC
66 GCGTCTCTGTATTGACAGAGAGC
* * *
26123269 AGATCAAAGATGATAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAGTAGATTTG
1 AGATCAAAGATAACAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAGCAGATTTG
* * *
26123334 ACATCTTTGTATTGACAGAGAGC
66 GCGTCTCTGTATTGACAGAGAGC
** * * * * *
26123357 AGATTGAAGATAGCAAATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATTTG
1 AGATCAAAGATAACAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAGCAGATTTG
* *
26123422 GGGTCTCTATATTGACAGAGAGC
66 GCGTCTCTGTATTGACAGAGAGC
* * * **
26123445 AGATCAAAGATAGCAGATTTGGCGTATCTTATTTCTATAAATATTGAGAGCAGATCAAAGATAGC
1 AGATCAAAGATAACAGATTTGGC--ATC---TCTGTATTGATA--GAGAGCAGATCAAAGATAGC
*
26123510 AGATTTGGCGTCTCTGTATTGACGGAGAGC
59 AGATTTGGCGTCTCTGTATTGACAGAGAGC
* * * * *
26123540 AGATCAAAGATAGA-ATATGTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGAT-GACAGATG
1 AGATCAAAGATA-ACAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAG-CAGATT
* * * *
26123603 TGGCCTCTCCGTATTAGGCA-AGGAGT
64 TGGCGTCTCTGTATT-GACAGA-GAGC
26123629 AGATCAAAGAT
1 AGATCAAAGAT
26123640 TTCAGCATGG
Statistics
Matches: 376, Mismatches: 71, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
87 1 0.00
88 275 0.73
89 17 0.05
90 9 0.02
93 9 0.02
95 65 0.17
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (88 bp):
AGATCAAAGATAACAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCAAAGATAGCAGATTTG
GCGTCTCTGTATTGACAGAGAGC
Found at i:26123339 original size:132 final size:131
Alignment explanation
Indices: 26123100--26123594 Score: 585
Period size: 132 Copynumber: 3.7 Consensus size: 131
26123090 TATAGATCAC
* ** ** ** * *
26123100 AGATAGCCGATTTGGTATCTCTGTATTGTTAGAGAGCAGATTGAATATGACGGATTTGGCATCTC
1 AGATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGA-AGATTTGGCATCTC
* * * *
26123165 TGTATTGACAGAGAGCAGATCGAAGATAACAGGTTTGGCATCTTTGTATTGATAGAGAGCAGGTC
65 TGTATTGACAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTTTGTATTGATAGAGAGCAGATC
26123230 GA
130 GA
* *
26123232 AGATAGCAGATGTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATGATAGATTTGGCATCTC
1 AGATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGA-AGATTTGGCATCTC
* * * * *
26123297 TGTATTGATAGAGAGCAGATCAAAGATAGTAGATTTGACATCTTTGTATTGACAGAGAGCAGATT
65 TGTATTGACAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTTTGTATTGATAGAGAGCAGATC
26123362 GA
130 GA
* * * **
26123364 AGATAGCAAATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGATTTGGGGTCTC
1 AGATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGAT-GAAGATTTGGCATCTC
* * **
26123429 TATATTGACAGAGAGCAGATCAAAGATAGCAGATTTGGCGTATCTTATTTCTATAAATATTGAGA
65 TGTATTGACAGAGAGCAGATCAAAGATAGCAGATTTGGC--ATC---TTTGTATTGATA--GAGA
*
26123494 GCAGATCAA
123 GCAGATCGA
* * * *
26123503 AGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAAAGATAGAATATGTGGCGTCTC
1 AGATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGAT-GAAGATTTGGCATCTC
26123568 TGTATTGACAGAGAGCAGATCAAAGAT
65 TGTATTGACAGAGAGCAGATCAAAGAT
26123595 GACAGATGTG
Statistics
Matches: 309, Mismatches: 46, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
132 202 0.65
133 1 0.00
134 3 0.01
137 8 0.03
139 95 0.31
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (131 bp):
AGATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGAAGATTTGGCATCTCT
GTATTGACAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTTTGTATTGATAGAGAGCAGATCG
A
Found at i:26123902 original size:18 final size:19
Alignment explanation
Indices: 26123879--26123914 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26123869 CCGGCCCAGA
*
26123879 AAAAACAGAAA-AATAAAT
1 AAAAACAAAAATAATAAAT
26123897 AAAAACAAAAATAATAAA
1 AAAAACAAAAATAATAAA
26123915 AGTCCTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.11
Consensus pattern (19 bp):
AAAAACAAAAATAATAAAT
Found at i:26125024 original size:11 final size:11
Alignment explanation
Indices: 26125008--26125040 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
26124998 CGAGATAGAA
26125008 ATAATTATTTT
1 ATAATTATTTT
26125019 ATAATTATTTT
1 ATAATTATTTT
26125030 ATAATTATTTT
1 ATAATTATTTT
26125041 GATGATTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATAATTATTTT
Found at i:26126305 original size:46 final size:46
Alignment explanation
Indices: 26126247--26126416 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
26126237 TGGTTGAGCA
*
26126247 TCCGCACTCGTTGAGTTGAGTCCGAGTTCACCTGTGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTGTGGATGCGAATG
* *
26126293 TCCGAACTCGTTGAGTTGAGTCTGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTGTG-GATGCGAA-T--G
** * *
26126338 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTGTGGATGCGAATG
* * *
26126386 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
26126417 TTAGGGGCGG
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 5 0.05
43 6 0.06
45 1 0.01
46 53 0.52
47 27 0.27
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTGTGGATGCGAATG
Found at i:26126403 original size:93 final size:93
Alignment explanation
Indices: 26126244--26126414 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
26126234 GGATGGTTGA
* * * *
26126244 GCATCCGCACTCGTTGAGTTGAGTCCGAGTTCACCTGTGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
26126309 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
** *
26126337 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
26126402 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
26126415 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:26128010 original size:21 final size:20
Alignment explanation
Indices: 26127986--26128048 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
26127976 ATAGTATATA
26127986 TATTATTTTTTATTTATACAT
1 TATTATTTTTTATTTATA-AT
*
26128007 TATTCATTATATTATTTAT-AT
1 TATT-ATT-TTTTATTTATAAT
*
26128028 TATTATACATTTTATTTATAA
1 TATTAT--TTTTTATTTATAA
26128049 ATTTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
20 2 0.06
21 19 0.56
22 4 0.12
23 9 0.26
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTATTTTTTATTTATAAT
Found at i:26128139 original size:26 final size:26
Alignment explanation
Indices: 26128097--26128158 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
26128087 ATTTCTTATT
* **
26128097 TTATTATAAATTATGTATTATTTT-A
1 TTATTATTAATTATGTAAAATTTTAA
*
26128122 TTATTCATTAATTGTGTAAAATTTTAA
1 TTATT-ATTAATTATGTAAAATTTTAA
26128149 TTATTATTAA
1 TTATTATTAA
26128159 ATAATATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 5 0.16
26 20 0.65
27 6 0.19
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (26 bp):
TTATTATTAATTATGTAAAATTTTAA
Found at i:26132960 original size:26 final size:24
Alignment explanation
Indices: 26132900--26132964 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 24
26132890 TCATTTAAAA
26132900 TATTTTTTCTCTTT-TCTTTTTCTT
1 TATTTTTT-TCTTTCTCTTTTTCTT
26132924 T-TTTTACTTTCTTTCTCTTTTTCCTT
1 TATTTT--TTTCTTTCTCTTTTT-CTT
26132950 TAATTTTTTTCTTTC
1 T-ATTTTTTTCTTTC
26132965 AATTTTCCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
23 4 0.11
24 6 0.17
25 9 0.26
26 12 0.34
28 4 0.11
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.75
Consensus pattern (24 bp):
TATTTTTTTCTTTCTCTTTTTCTT
Found at i:26134252 original size:20 final size:20
Alignment explanation
Indices: 26134168--26134256 Score: 88
Period size: 20 Copynumber: 4.5 Consensus size: 20
26134158 ATATATTTGT
* *
26134168 ACTTTGGTGCTCTTGTTTAC
1 ACTTTGGTGCCCCTGTTTAC
* * * *
26134188 CCTTCGTTGTCCCTGTTTAC
1 ACTTTGGTGCCCCTGTTTAC
* * * *
26134208 ACTTTGATGTCCCTGATTGC
1 ACTTTGGTGCCCCTGTTTAC
26134228 ACTTTGGTGCCCCTGTTTAC
1 ACTTTGGTGCCCCTGTTTAC
26134248 ACTTTGGTG
1 ACTTTGGTG
26134257 TCTTTTTTTG
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.10, C:0.26, G:0.20, T:0.44
Consensus pattern (20 bp):
ACTTTGGTGCCCCTGTTTAC
Found at i:26134268 original size:40 final size:40
Alignment explanation
Indices: 26134198--26134302 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
26134188 CCTTCGTTGT
* *
26134198 CCCTGTTTACACTTTGATGTCCCTGATTGCACTTTGGTGC
1 CCCTGTTTACACTTTGATGTCCCTGATTGCACATTGATGC
* ** **
26134238 CCCTGTTTACACTTTGGTGTCTTTTTTTGCACATTGATG-
1 CCCTGTTTACACTTTGATGTCCCTGATTGCACATTGATGC
* *
26134277 CCCTTTTTAGCACTATGATGCTCCCT
1 CCCTGTTTA-CACTTTGATG-TCCCT
26134303 AGTGTGGTGT
Statistics
Matches: 51, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
39 8 0.16
40 40 0.78
41 3 0.06
ACGTcount: A:0.13, C:0.27, G:0.17, T:0.43
Consensus pattern (40 bp):
CCCTGTTTACACTTTGATGTCCCTGATTGCACATTGATGC
Found at i:26139943 original size:50 final size:49
Alignment explanation
Indices: 26139765--26140009 Score: 240
Period size: 49 Copynumber: 4.9 Consensus size: 49
26139755 TCTATTGTGA
* * * *
26139765 GGTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACC-GAATTATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-ATAATT
* * * * * *
26139814 GGCCGCATTTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * **
26139864 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * **
26139914 AGGTCACGTGTGTAATACTACGTGTAGGCTACTACATGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * **
26139964 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
26140010 GCTTTGGCTA
Statistics
Matches: 155, Mismatches: 38, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 73 0.47
50 45 0.29
51 37 0.24
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:26145585 original size:10 final size:10
Alignment explanation
Indices: 26145570--26145597 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
26145560 ATTCTCTCTA
26145570 TTCTTCTTTT
1 TTCTTCTTTT
26145580 TTCTTCTTTT
1 TTCTTCTTTT
26145590 TTCTTCTT
1 TTCTTCTT
26145598 CAAAACCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTCTTCTTTT
Found at i:26145658 original size:15 final size:15
Alignment explanation
Indices: 26145638--26145667 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26145628 AACACTTGTG
26145638 CCGAAACCACAAAAA
1 CCGAAACCACAAAAA
*
26145653 CCGAAACCTCAAAAA
1 CCGAAACCACAAAAA
26145668 ATACATTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.33, G:0.07, T:0.03
Consensus pattern (15 bp):
CCGAAACCACAAAAA
Found at i:26164420 original size:50 final size:51
Alignment explanation
Indices: 26164350--26164453 Score: 201
Period size: 50 Copynumber: 2.1 Consensus size: 51
26164340 ATAAAAGAAG
26164350 AAAGCTTTTTTACAAAAGCTTGGAGAACACAACAATGGAAGCAAGATAAAT
1 AAAGCTTTTTTACAAAAGCTTGGAGAACACAACAATGGAAGCAAGATAAAT
26164401 AAAG-TTTTTTACAAAAGCTTGGAGAACACAACAATGGAAGCAAGATAAAT
1 AAAGCTTTTTTACAAAAGCTTGGAGAACACAACAATGGAAGCAAGATAAAT
26164451 AAA
1 AAA
26164454 TTAAAACACC
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 49 0.92
51 4 0.08
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.21
Consensus pattern (51 bp):
AAAGCTTTTTTACAAAAGCTTGGAGAACACAACAATGGAAGCAAGATAAAT
Found at i:26164601 original size:12 final size:12
Alignment explanation
Indices: 26164584--26164610 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26164574 GCTATAGTGT
26164584 TAACTAATTAAC
1 TAACTAATTAAC
26164596 TAACTAATTAAC
1 TAACTAATTAAC
26164608 TAA
1 TAA
26164611 ATAAAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (12 bp):
TAACTAATTAAC
Found at i:26180078 original size:40 final size:39
Alignment explanation
Indices: 26180007--26180122 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 39
26179997 CGCATTCAAG
* * *
26180007 GGTACCGAAAGTACAAACAAGG-GTACTTATGTGCATTTAGG
1 GGTACCG-AAGTAC-AA-AAGGAGCACATATGTGCATTTAGA
** *
26180048 GGTAGTGAAGTACAAATAGGAGCACATATGTGCAATTAGA
1 GGTACCGAAGTACAAA-AGGAGCACATATGTGCATTTAGA
* *
26180088 GGTACCGAAGTACAAACGGGGCACATATGTGCATT
1 GGTACCGAAGTACAAAAGGAGCACATATGTGCATT
26180123 CATACAATAA
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.02
39 21 0.34
40 35 0.56
41 5 0.08
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (39 bp):
GGTACCGAAGTACAAAAGGAGCACATATGTGCATTTAGA
Found at i:26183066 original size:27 final size:26
Alignment explanation
Indices: 26183026--26183137 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
26183016 AACATGGCTG
* * *
26183026 CCAGAACATATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26183052 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* * *
26183080 CCGGAATAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
26183107 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
26183134 CCAG
1 CCAG
26183138 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.69
28 16 0.23
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26184581 original size:24 final size:23
Alignment explanation
Indices: 26184554--26184624 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
26184544 CTAGATTTCC
26184554 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCT-CTCCTAAATCCTA
26184578 TCCCTTATCATCTCCTAAATCCTA
1 TCCCTTATC-TCTCCTAAATCCTA
* * *
26184602 TCCTTTATCAACTCGTAAATCCT
1 TCCCTTATC-TCTCCTAAATCCT
26184625 CTCCTGACAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 42 0.98
25 1 0.02
ACGTcount: A:0.24, C:0.35, G:0.03, T:0.38
Consensus pattern (23 bp):
TCCCTTATCTCTCCTAAATCCTA
Found at i:26184629 original size:24 final size:24
Alignment explanation
Indices: 26184565--26184629 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
26184555 CCCTTATCTG
* *
26184565 CTCCTAAATCCTATCCCTTATCAT
1 CTCCTAAATCCTATCCTTTATCAA
26184589 CTCCTAAATCCTATCCTTTATCAA
1 CTCCTAAATCCTATCCTTTATCAA
* *
26184613 CTCGTAAATCCTCTCCT
1 CTCCTAAATCCTATCCT
26184630 GACAGACTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.25, C:0.37, G:0.02, T:0.37
Consensus pattern (24 bp):
CTCCTAAATCCTATCCTTTATCAA
Found at i:26190910 original size:27 final size:27
Alignment explanation
Indices: 26190850--26190959 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
26190840 CATGGCTGCT
** *
26190850 AGAACAGATAA-TGTGATAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
* *
26190876 AAATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAATTGTGGCAGAGCCACC
26190904 AGAACAGA-AATATGTGGCAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
26190931 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
26190958 AG
1 AG
26190960 GATGCTTCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.07
27 50 0.70
28 16 0.23
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:26190939 original size:54 final size:54
Alignment explanation
Indices: 26190850--26190959 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
26190840 CATGGCTGCT
* * *
26190850 AGAACAGATAATGTGATAGAGTCACCAAATACAGATAATCGTGGCAGAGCCACC
1 AGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCACC
* * * *
26190904 AGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGAAA-ATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCACC
26190958 AG
1 AG
26190960 GATGCTTCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (54 bp):
AGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCACC
Found at i:26192408 original size:24 final size:24
Alignment explanation
Indices: 26192381--26192447 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
26192371 ATTTCCTCCA
*
26192381 TTATCTGCTCCTAAATCCTATCCC
1 TTATCTACTCCTAAATCCTATCCC
26192405 TTAT-TAACTCCTAAATCCTATCCC
1 TTATCT-ACTCCTAAATCCTATCCC
*
26192429 TTATCAACTCCTAAATCCT
1 TTATCTACTCCTAAATCCT
26192448 CTCCTGACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.27, C:0.34, G:0.01, T:0.37
Consensus pattern (24 bp):
TTATCTACTCCTAAATCCTATCCC
Found at i:26197738 original size:29 final size:29
Alignment explanation
Indices: 26197672--26197790 Score: 177
Period size: 29 Copynumber: 4.1 Consensus size: 29
26197662 ACATACATGT
* * * *
26197672 ATATGGCTCACTAGGCCC-AATCTCATCC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
26197700 ATATGACCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
26197729 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
26197758 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
26197787 ATAT
1 ATAT
26197791 TCATACTTTC
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 15 0.18
29 67 0.82
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:26204390 original size:40 final size:40
Alignment explanation
Indices: 26204335--26204481 Score: 125
Period size: 39 Copynumber: 3.7 Consensus size: 40
26204325 GTATTAAAGA
* * *
26204335 ACAAACAGTGACACGTGTGTGCATTCAAGGGTACTGAAGT
1 ACAAACAGGGACACGTATGCGCATTCAAGGGTACTGAAGT
* * **
26204375 ACAAATAGGGACACGTATGCGCATT-TAGGGTACCAAAGT
1 ACAAACAGGGACACGTATGCGCATTCAAGGGTACTGAAGT
** * * * * * *
26204414 ATGAATAGGGGCACATATGCACATTCAGGGGTAATCGAAGT
1 ACAAACAGGGACACGTATGCGCATTCAAGGGTACT-GAAGT
* *
26204455 ACAAACAGGGGCACGTATGTGCATTCA
1 ACAAACAGGGACACGTATGCGCATTCA
26204482 TCCAATAATT
Statistics
Matches: 82, Mismatches: 23, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
39 31 0.38
40 26 0.32
41 25 0.30
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (40 bp):
ACAAACAGGGACACGTATGCGCATTCAAGGGTACTGAAGT
Found at i:26205656 original size:11 final size:11
Alignment explanation
Indices: 26205640--26205677 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
26205630 AATTCCAACC
26205640 AAAATTAAATT
1 AAAATTAAATT
26205651 AAAATTAAAATT
1 AAAATT-AAATT
*
26205663 AAAATTAAAAT
1 AAAATTAAATT
26205674 AAAA
1 AAAA
26205678 AATTAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATTAAATT
Found at i:26205657 original size:6 final size:6
Alignment explanation
Indices: 26205640--26205684 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
26205630 AATTCCAACC
*
26205640 AAAATT -AAATT AAAATT AAAATT AAAATT AAAATAA AAAATT AAA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAAT-T AAAATT AAA
26205685 TAAGTCTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 5 0.14
6 25 0.71
7 5 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:26207336 original size:49 final size:50
Alignment explanation
Indices: 26207273--26207511 Score: 232
Period size: 49 Copynumber: 4.8 Consensus size: 50
26207263 TGAGGTCACG
* *
26207273 TGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * * * * * * * * *
26207322 TATGTAGTACTAAGTGCAAGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTAGGTCGCA
* * * * *
26207373 TGTGTAGTACTAAGTACAGACTACTACGTGTATCAGATGGTTAGGTC-AA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * *
26207422 GTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTAGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * *
26207472 TCTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
26207512 CTTCGGCTAC
Statistics
Matches: 148, Mismatches: 38, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
49 70 0.47
50 44 0.30
51 34 0.23
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
Found at i:26225320 original size:28 final size:28
Alignment explanation
Indices: 26225288--26225352 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
26225278 ATTTACTAGA
*
26225288 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
26225316 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
26225344 ATACCCCTA
1 ATACCCCTA
26225353 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:26225502 original size:28 final size:29
Alignment explanation
Indices: 26225458--26225531 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
26225448 AGGAAGCGTC
* *
26225458 CTGGTGGCTA-TGCCACAAATTATCTGT-T
1 CTGGTGGC-ACTGTCACAAAATATCTGTAT
26225486 CTGGTGGCACTGTCACAAAATATCTGTAT
1 CTGGTGGCACTGTCACAAAATATCTGTAT
* *
26225515 CTGGTGACTCTGTCACA
1 CTGGTGGCACTGTCACA
26225532 TTTTCTGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.03
28 23 0.57
29 16 0.40
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (29 bp):
CTGGTGGCACTGTCACAAAATATCTGTAT
Found at i:26226007 original size:19 final size:19
Alignment explanation
Indices: 26225983--26226021 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26225973 CTTTTAATTA
* *
26225983 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
26226002 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
26226021 T
1 T
26226022 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:26226629 original size:11 final size:10
Alignment explanation
Indices: 26226601--26226634 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26226591 AGCCTGTAAG
26226601 TATTCTGAAT
1 TATTCTGAAT
*
26226611 TTTTCTGAAT
1 TATTCTGAAT
26226621 ATATTCTGAAT
1 -TATTCTGAAT
26226632 TAT
1 TAT
26226635 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:26231570 original size:28 final size:28
Alignment explanation
Indices: 26231539--26231603 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
26231529 ATTTACTAGA
* *
26231539 ATACCCTTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* * *
26231567 ATACCCCTATGTGTGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
26231595 ATACCCCTA
1 ATACCCCTA
26231604 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:26231749 original size:28 final size:29
Alignment explanation
Indices: 26231708--26231770 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
26231698 AGGAAGCGTC
*
26231708 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
26231736 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
26231765 CTGGTG
1 CTGGTG
26231771 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:26231781 original size:29 final size:28
Alignment explanation
Indices: 26231718--26231781 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
26231708 CTGGTGGCTA
* *
26231718 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
26231746 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
26231775 TGTCACA
1 TGCCACA
26231782 TTTTCTGTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:26241576 original size:19 final size:20
Alignment explanation
Indices: 26241547--26241591 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
26241537 CGAAATTTTA
* *
26241547 ATTAGTATTATGAGATAAAT
1 ATTATTATTATGAGAAAAAT
*
26241567 -TTATTATTATTAGAAAAAT
1 ATTATTATTATGAGAAAAAT
26241586 ATTATT
1 ATTATT
26241592 GCATGTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (20 bp):
ATTATTATTATGAGAAAAAT
Found at i:26244087 original size:60 final size:60
Alignment explanation
Indices: 26244007--26244143 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 60
26243997 AACTGTGTTG
** *
26244007 ATATGGGC-AAGGCTGAATATA-TCTCGACT-TGTAATAGGGCTATGGCCCAGATTGATACTA
1 ATATGGGCTAAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTATGGCCCAGATTAATACTA
* * *
26244067 ATATGGGCTAA-GCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAAGGCCCAATATACTCTGATA-TGTAAAGGGCTATGGCCCAGATTAATACTA
26244127 ATATGGGCTAAGGCCCA
1 ATATGGGCTAAGGCCCA
26244144 GTAAAGCTTG
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
59 1 0.02
60 50 0.76
61 15 0.23
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAAGGCCCAATATACTCTGATATGTAAAGGGCTATGGCCCAGATTAATACTA
Found at i:26246134 original size:17 final size:19
Alignment explanation
Indices: 26246092--26246135 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26246082 ACGAAATTTT
*
26246092 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
26246111 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
26246129 AA-TATTA
1 AATTATTA
26246136 CTGCATGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:26248483 original size:60 final size:59
Alignment explanation
Indices: 26248419--26248553 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
26248409 CCAACTGTGT
* * * *
26248419 TGATATGGGCAAGGCCGAATATA-TCTCGACT-TGTAATAGGGCTATGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATACTCT-GA-TATATAA-AGGGCTACGGCCCAGATTAATAC
* * *
26248479 TGATATGGGCTAGGCCCAATATACTCTGATACTATAAGGGGCTACGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCTGATA-TATAAAGGGCTACGGCCCAGATTAATAC
26248539 TGATATGGGCTAAGG
1 TGATATGGGC-AAGG
26248554 TCCAGTTAAC
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 1 0.02
60 52 0.83
61 10 0.16
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (59 bp):
TGATATGGGCAAGGCCCAATATACTCTGATATATAAAGGGCTACGGCCCAGATTAATAC
Found at i:26251707 original size:46 final size:47
Alignment explanation
Indices: 26251561--26251767 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 47
26251551 TTTGTGTGCT
* * * * *
26251561 AGTGTAAGACATGCCTGGGACATGCATTGGCCAC-A-TTTTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AGAGCC
* * * * * ** *
26251607 AGTGTAAGACCATATATGGGACATGGCATCGACATTGAGA-CAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
* *
26251655 AATGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGTAG-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
* * *
26251701 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACAAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
26251745 AGTGTAAGACCATGTCTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
26251768 AGGCATCAGC
Statistics
Matches: 126, Mismatches: 28, Indels: 15
0.75 0.17 0.09
Matches are distributed among these distances:
44 11 0.09
45 14 0.11
46 56 0.44
47 25 0.20
48 19 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:26259432 original size:48 final size:49
Alignment explanation
Indices: 26259330--26259696 Score: 236
Period size: 47 Copynumber: 7.7 Consensus size: 49
26259320 TTTGTGTGCC
* * ** *
26259330 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACAT--TTTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCATATGAGATGAGAGCT
* *
26259376 AGTGTAAGACCATGTATGGGACATGGCATCGGCAT-TGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAGATGAGAGCT
* * * * *
26259424 AGTATAAGA-CATGTCTGGGACAT-GCATCAGC-TACGAGATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAGATGAGAGCT
* *
26259468 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTAT-A-ATG-GTG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--TATGAGATGAGAGCT
* *
26259515 CAATGTAAGACCATGTTTGGGACATGGCATCGGCATGGAT-ATG-TGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--ATGA-GATGAGAGCT
* * ** *
26259566 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCT-ATTTTGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGA-GATGAGAGCT
* * ** * *
26259614 CAGTGTAAGACCATGTTTGGAACATGGCATCAACTTGATG-GAT--GAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-ATGAGATGAGAGCT
* *
26259662 AATGTAAGACCATGTCTGGGACATAGCATCGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
26259697 TATACCTTAA
Statistics
Matches: 253, Mismatches: 44, Indels: 47
0.74 0.13 0.14
Matches are distributed among these distances:
44 8 0.03
45 16 0.06
46 33 0.13
47 61 0.24
48 59 0.23
49 40 0.16
50 35 0.14
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAGATGAGAGCT
Found at i:26259585 original size:98 final size:96
Alignment explanation
Indices: 26259467--26259691 Score: 267
Period size: 98 Copynumber: 2.3 Consensus size: 96
26259457 CGAGATGTGT
* *
26259467 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-GTATAATGGT-GTCAATGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCTATAATGATAGTCAATGTAAGACCATG
* **
26259530 TTTGGGACATGGCATCGGCATGGATATGTGA-GAGC
65 TTTGGAACATGGCATCAAC-TGG--ATG-GATGAGC
* * ** *
26259565 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTATTTTGATAGTCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCTATAATGATAGTCAATGTAAGACCATGT
*
26259630 TTGGAACATGGCATCAACTTGATGGATGAGC
66 TTGGAACATGGCATCAACTGGATGGATGAGC
* *
26259661 CAATGTAAGACCATGTCTGGGACATAGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
26259692 GGCATTATAC
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
95 2 0.02
96 35 0.32
97 1 0.01
98 40 0.36
99 32 0.29
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCTATAATGATAGTCAATGTAAGACCATGT
TTGGAACATGGCATCAACTGGATGGATGAGC
Found at i:26259693 original size:96 final size:97
Alignment explanation
Indices: 26259470--26259695 Score: 271
Period size: 96 Copynumber: 2.3 Consensus size: 97
26259460 GATGTGTCAG
* * *
26259470 TGTAAGACCATGTCTGGGACATGGCATCAGCACGTATAATGGTGTCAATGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCTATAATGATGTCAATGTAAGACCATGTTTGG
* ** * *
26259535 GACATGGCATCGGCATGGATATGTGAGAGCTAG
66 AACATGGCATCAACATGGA-ATGTGAGAGCCAA
** *
26259568 TGTAAGACCATGTCTGGGACATGGCATCGGC-CTCTATTTTGATAGTCAGTGTAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAC-CTATAATGAT-GTCAATGTAAGACCATGTTT
*
26259632 GGAACATGGCATCAAC-TTG-ATG-GATGAGCCAA
64 GGAACATGGCATCAACATGGAATGTGA-GAGCCAA
*
26259664 TGTAAGACCATGTCTGGGACATAGCATCGGCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA
26259696 TTATACCTTA
Statistics
Matches: 111, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
95 2 0.02
96 38 0.34
97 1 0.01
98 38 0.34
99 32 0.29
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (97 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACCTATAATGATGTCAATGTAAGACCATGTTTGG
AACATGGCATCAACATGGAATGTGAGAGCCAA
Found at i:26272080 original size:24 final size:24
Alignment explanation
Indices: 26271996--26272080 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
26271986 TCCGAGTTGT
* *
26271996 ATAATTGGAAGCTCAT-AAGAGCC
1 ATAATAGGAAGCTCATGAAAAGCC
*
26272019 ATAATAGAGAAGCTCATG-CAAGCC
1 ATAATAG-GAAGCTCATGAAAAGCC
*
26272043 AATAA-CGGATAGCTC-TGAAAAGCC
1 -ATAATAGGA-AGCTCATGAAAAGCC
26272067 ATTAATAGGAAGCT
1 A-TAATAGGAAGCT
26272081 TCAGATAGCC
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 11 0.22
24 31 0.63
25 7 0.14
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (24 bp):
ATAATAGGAAGCTCATGAAAAGCC
Found at i:26277424 original size:27 final size:27
Alignment explanation
Indices: 26277391--26277539 Score: 108
Period size: 27 Copynumber: 5.5 Consensus size: 27
26277381 CACACTAAAA
* *
26277391 AGATGGAAGCTTTTTTGGTGATCTAAG
1 AGATGGAAGCCTTTATGGTGATCTAAG
*
26277418 AGATGGAACCCTTTATGGTGATCTAAG
1 AGATGGAAGCCTTTATGGTGATCTAAG
* * *
26277445 AGATGAAAGCC--TAGTCGG-CAACTTAAG
1 AGATGGAAGCCTTTA-T-GGTGATC-TAAG
* * **
26277472 AGATGGAAACCTTTGTGGCAATCTAAG
1 AGATGGAAGCCTTTATGGTGATCTAAG
* *
26277499 AGATGGAAGCCTTTCTGGCTG-TCTATG
1 AGATGGAAGCCTTTATGG-TGATCTAAG
* *
26277526 AAAAGGAAGCCTTT
1 AGATGGAAGCCTTT
26277540 GTGGCAATTT
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
25 2 0.02
26 3 0.03
27 87 0.91
28 3 0.03
29 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (27 bp):
AGATGGAAGCCTTTATGGTGATCTAAG
Found at i:26277546 original size:81 final size:80
Alignment explanation
Indices: 26277411--26277569 Score: 178
Period size: 81 Copynumber: 2.0 Consensus size: 80
26277401 TTTTTTGGTG
* *
26277411 ATCTAAGAGATGGAACCCTTTATGGTGATCTAAGAGATGAAAGCCTAGTCGGCAACTTAAGAGAT
1 ATCTAAGAGATGGAACCCTTTATGGTGATCTAAGAAAAGAAAGCCTAGTCGGCAACTTAAGA-AT
26277476 GGAAACCTTTGTGGCA
65 GGAAACCTTTGTGGCA
* * * * * * *
26277492 ATCTAAGAGATGGAAGCCTTTCTGGCTG-TCTATGAAAAGGAAGCCTTTGT-GGCAATTTATGAA
1 ATCTAAGAGATGGAACCCTTTATGG-TGATCTAAGAAAAGAAAGCC-TAGTCGGCAACTTAAGAA
**
26277555 TGGATGCCTTTGTGG
64 TGGAAACCTTTGTGG
26277570 GGCACTCTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
80 14 0.22
81 46 0.71
82 5 0.08
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (80 bp):
ATCTAAGAGATGGAACCCTTTATGGTGATCTAAGAAAAGAAAGCCTAGTCGGCAACTTAAGAATG
GAAACCTTTGTGGCA
Found at i:26277569 original size:26 final size:26
Alignment explanation
Indices: 26277474--26277569 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
26277464 AACTTAAGAG
* *
26277474 ATGGAAACCTTTGTGGCAATCTAAGA
1 ATGGAAGCCTTTGTGGCAATCTATGA
* **
26277500 GATGGAAGCCTTTCTGGCTGTCTATGAA
1 -ATGGAAGCCTTTGTGGCAATCTATG-A
* *
26277528 AAGGAAGCCTTTGTGGCAATTTATGA
1 ATGGAAGCCTTTGTGGCAATCTATGA
*
26277554 ATGGATGCCTTTGTGG
1 ATGGAAGCCTTTGTGG
26277570 GGCACTCTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
26 15 0.27
27 40 0.71
28 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (26 bp):
ATGGAAGCCTTTGTGGCAATCTATGA
Found at i:26281514 original size:29 final size:29
Alignment explanation
Indices: 26281472--26281544 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
26281462 TGAAAGCATG
26281472 TATATGAATGTGATTTGGGCCTAATGGGC
1 TATATGAATGTGATTTGGGCCTAATGGGC
*
26281501 TATACGAATGTGATTTGGGCCTAATGGGC
1 TATATGAATGTGATTTGGGCCTAATGGGC
* *
26281530 CATATGAATGAGATT
1 TATATGAATGTGATT
26281545 GAGCTTAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (29 bp):
TATATGAATGTGATTTGGGCCTAATGGGC
Found at i:26282603 original size:26 final size:27
Alignment explanation
Indices: 26282574--26282628 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
26282564 TTTCCACAAC
26282574 TTAA-TTTTTTCTTAAAATGATAGGCT
1 TTAATTTTTTTCTTAAAATGATAGGCT
26282600 TTAATTTTTTTCTTAAAATGATAGGCT
1 TTAATTTTTTTCTTAAAATGATAGGCT
26282627 TT
1 TT
26282629 CATAAATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.53
Consensus pattern (27 bp):
TTAATTTTTTTCTTAAAATGATAGGCT
Found at i:26283444 original size:27 final size:27
Alignment explanation
Indices: 26283428--26283512 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
26283418 TTACCCTATG
*
26283428 AGGGTAAAATCGTCATTTTATCACTTA
1 AGGGCAAAATCGTCATTTTATCACTTA
*
26283455 AGGGCAATATCGTCATTTTATCACTTA
1 AGGGCAAAATCGTCATTTTATCACTTA
* * *
26283482 AGGGCAATATCATCATTTTATCACATA
1 AGGGCAAAATCGTCATTTTATCACTTA
26283509 AGGG
1 AGGG
26283513 TTTAGGTACA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
AGGGCAAAATCGTCATTTTATCACTTA
Found at i:26283672 original size:18 final size:18
Alignment explanation
Indices: 26283618--26283660 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
26283608 ATAATGTGGG
26283618 CCATGTGTGCCCACAAGC
1 CCATGTGTGCCCACAAGC
26283636 CCATGTGTGCCCACAAGC
1 CCATGTGTGCCCACAAGC
26283654 CCATGTG
1 CCATGTG
26283661 GCTCACGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.37, G:0.23, T:0.19
Consensus pattern (18 bp):
CCATGTGTGCCCACAAGC
Found at i:26287834 original size:28 final size:29
Alignment explanation
Indices: 26287775--26287842 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 29
26287765 ATTCGAGATC
26287775 TATTTCTTTAGTTCTTTAGCTTTAAAATCT
1 TATTTC-TTAGTTCTTTAGCTTTAAAATCT
26287805 TATTTCTTAGTTCTTTAG-TTTAAAATCT
1 TATTTCTTAGTTCTTTAGCTTTAAAATCT
26287833 TATTTTCTTA
1 TA-TTTCTTA
26287843 ATCACCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 12 0.32
29 19 0.51
30 6 0.16
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59
Consensus pattern (29 bp):
TATTTCTTAGTTCTTTAGCTTTAAAATCT
Found at i:26293820 original size:16 final size:15
Alignment explanation
Indices: 26293779--26293821 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
26293769 AAAGATGATA
26293779 ATATTAATATATAATT
1 ATATTAAT-TATAATT
**
26293795 ATATCCATTATAATAT
1 ATATTAATTATAAT-T
26293811 ATATTAATTAT
1 ATATTAATTAT
26293822 TATCAACTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTAATTATAATT
Found at i:26294611 original size:26 final size:26
Alignment explanation
Indices: 26294577--26294655 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 26
26294567 AATTTTTTCC
*
26294577 TAAATTTTTAATTTTATTTAATTTTT
1 TAAATTTTTAATTTTATTAAATTTTT
* **
26294603 TAAATTTTTAA-TTTATTGAATCATT
1 TAAATTTTTAATTTTATTAAATTTTT
* *
26294628 AATAATTTTT-ATTTAATTAAATTTTT
1 TA-AATTTTTAATTTTATTAAATTTTT
26294654 TA
1 TA
26294656 GAAAATAATT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
25 13 0.31
26 29 0.69
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (26 bp):
TAAATTTTTAATTTTATTAAATTTTT
Found at i:26310928 original size:56 final size:56
Alignment explanation
Indices: 26310834--26311001 Score: 221
Period size: 56 Copynumber: 3.0 Consensus size: 56
26310824 TCTTACATGT
* * * * * * *
26310834 AATCACATATCGATGCCAATGCACTAGATGTGGCCTTACTCACACACATATATC-A
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
*
26310889 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATTTATCGA
1 -AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
* * *
26310946 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTTGTACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
26311002 TACCATGGTC
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
56 98 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
Found at i:26311852 original size:21 final size:21
Alignment explanation
Indices: 26311827--26311869 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26311817 ATCATTTTAC
* * *
26311827 ATATATAACCTTTATGAAATA
1 ATATAAAACCATTATAAAATA
26311848 ATATAAAACCATTATAAAATA
1 ATATAAAACCATTATAAAATA
26311869 A
1 A
26311870 GGTCACAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (21 bp):
ATATAAAACCATTATAAAATA
Found at i:26315017 original size:34 final size:34
Alignment explanation
Indices: 26314974--26315055 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
26314964 CATACTGTAC
*
26314974 TGAAATGGGCTAAGGCCCTGACTG-TCACTATTAT
1 TGAAATGGGCTAAGGCCCAGACTGCT-ACTATTAT
*
26315008 TGAAATGGGCTAA-GCCCAGACTGCTACTGTTAT
1 TGAAATGGGCTAAGGCCCAGACTGCTACTATTAT
26315041 TGGGAAA-GGGCTAAG
1 T--GAAATGGGCTAAG
26315056 ACTCCTAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 17 0.40
34 21 0.50
35 4 0.10
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCAGACTGCTACTATTAT
Found at i:26328436 original size:16 final size:17
Alignment explanation
Indices: 26328404--26328436 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26328394 AAATAAGAAG
26328404 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
26328422 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
26328437 CTTCATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:26329786 original size:46 final size:46
Alignment explanation
Indices: 26329719--26329888 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
26329709 TGTAACCTGC
26329719 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
26329765 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
26329815 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
**
26329858 CCATAAATGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
26329889 TTCAGATGCT
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.57
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:26329838 original size:93 final size:93
Alignment explanation
Indices: 26329726--26329897 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
26329716 TGCCCATAAG
** * *
26329726 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
26329791 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCAGATGCCTAGTTACATTTCA
*
26329819 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
26329884 ACGAGTTCAGATGC
66 ACGAGCTCAGATGC
26329898 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATTTCA
Found at i:26332197 original size:25 final size:25
Alignment explanation
Indices: 26332169--26332218 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
26332159 GTTGCTTAAG
*
26332169 GACTATGATTTCACGATAAAGTATC
1 GACTATGATTGCACGATAAAGTATC
*
26332194 GACTATGATTGCATGATAAAGTATC
1 GACTATGATTGCACGATAAAGTATC
26332219 ATCCTAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (25 bp):
GACTATGATTGCACGATAAAGTATC
Found at i:26334212 original size:27 final size:27
Alignment explanation
Indices: 26334182--26334252 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
26334172 TGCACTACAA
26334182 AGGTATTTCGATAATTTTACAAACCGG
1 AGGTATTTCGATAATTTTACAAACCGG
**
26334209 AGGTATTTC-AGTAATTTTACAAGTCGG
1 AGGTATTTCGA-TAATTTTACAAACCGG
26334236 -GAGTATTTCGATAATTT
1 AG-GTATTTCGATAATTT
26334253 CAAAAATTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 2 0.05
27 36 0.92
28 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGTATTTCGATAATTTTACAAACCGG
Found at i:26345906 original size:50 final size:50
Alignment explanation
Indices: 26345844--26346077 Score: 245
Period size: 50 Copynumber: 4.7 Consensus size: 50
26345834 AAGCTCTCTG
* *
26345844 GTACGCATAGTAGGCTGCACTTAGTACTACACATGTAACCTATCAATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTAACCTATCAATCTA
* * * *
26345894 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTAACCTATCAATCTA
** * * * * ** * **
26345944 AAACACATAATAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGT-AACCTA-TCAATCTA
* * * *
26345995 GTACGCATAGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTAACCTATCAATCTA
*
26346045 GTACACGTAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
26346078 CGTGACTCAC
Statistics
Matches: 145, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 3 0.02
50 110 0.76
51 31 0.21
52 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTAACCTATCAATCTA
Found at i:26345926 original size:26 final size:26
Alignment explanation
Indices: 26345849--26345927 Score: 76
Period size: 26 Copynumber: 3.1 Consensus size: 26
26345839 CTCTGGTACG
*
26345849 CATAGTAGGCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
* * *
26345875 CAT-GTAACCTATCAATCTAG---TACA
1 CATAGTAGCCT-GCACT-TAGTACTACA
26345899 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
26345925 CAT
1 CAT
26345928 GTGACTTAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
23 3 0.08
24 10 0.25
25 11 0.28
26 13 0.32
27 3 0.08
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (26 bp):
CATAGTAGCCTGCACTTAGTACTACA
Found at i:26346059 original size:101 final size:101
Alignment explanation
Indices: 26345894--26346082 Score: 261
Period size: 101 Copynumber: 1.9 Consensus size: 101
26345884 TATCAATCTA
** * *
26345894 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCATCTAAAACACATAATAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTAAAACACATAATAGCC
26345959 TACACTTAGTACTACACACGTGATCGAAGTTAACGG
66 TACACTTAGTACTACACACGTGATCGAAGTTAACGG
* * * *** * *
26345995 GTACGCATAGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTAAAACACATAATAGCC
*
26346060 TGCACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
26346083 CTCACAACGG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (101 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTAAAACACATAATAGCC
TACACTTAGTACTACACACGTGATCGAAGTTAACGG
Found at i:26346754 original size:30 final size:30
Alignment explanation
Indices: 26346697--26346755 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
26346687 CAAAAATCAT
* * *
26346697 ACTTTTACAAATTTTCATTTTGACCCCTAA
1 ACTTTCACAAATTTGCACTTTGACCCCTAA
* *
26346727 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTGCACTTTGACCCCTA
26346756 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (30 bp):
ACTTTCACAAATTTGCACTTTGACCCCTAA
Found at i:26349916 original size:16 final size:16
Alignment explanation
Indices: 26349897--26349938 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
26349887 CATGTGGATA
*
26349897 TATTTTTAAATTGTTT
1 TATTTTTAAATTGTCT
*
26349913 TATTTTGTAATTTGTCT
1 TATTTT-TAAATTGTCT
26349930 T-TTTTTAAA
1 TATTTTTAAA
26349939 ACTCTCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 3 0.14
16 10 0.45
17 9 0.41
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (16 bp):
TATTTTTAAATTGTCT
Found at i:26351067 original size:21 final size:20
Alignment explanation
Indices: 26351033--26351071 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
26351023 AAAATTGTAT
**
26351033 ATCTATCATCAAACATTCATA
1 ATCTATCAAAAAAC-TTCATA
26351054 ATCTATCAAAAAACTTCA
1 ATCTATCAAAAAACTTCA
26351072 AAACTCATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATCTATCAAAAAACTTCATA
Found at i:26355097 original size:27 final size:26
Alignment explanation
Indices: 26355056--26355196 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
26355046 AGGAAGCGTC
*
26355056 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
26355083 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
26355110 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* **
26355137 CTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
26355164 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
26355191 CTGGTG
1 CTGGTG
26355197 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.08
27 86 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:26355193 original size:54 final size:53
Alignment explanation
Indices: 26355056--26355196 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
26355046 AGGAAGCGTC
*
26355056 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
26355110 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
26355164 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATATCTG-ATCTGGTG
26355197 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
53 7 0.09
54 71 0.90
55 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:26359420 original size:3 final size:3
Alignment explanation
Indices: 26359409--26359638 Score: 62
Period size: 3 Copynumber: 74.7 Consensus size: 3
26359399 AAAAAAGAAG
* * * * * *
26359409 TAA TGA TAA TAA TAA TAG GAG TAA TAA TAA TAA T-A TAA TGA TGA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * *
26359457 CAA TAA TAA -AA GGAA CAA -AA TAA TAG TAA TAA TAA -AGA TATT TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA
* ** * *
26359502 TAA TAG TAA TAA TAA CGA TGA T-A TAAA TAA TAA TATA TACA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A TAA TAA
* * * *
26359549 TAA -AA GTTAGA -AA TAA AAA TAA TGGAA GTAG TAA TAA CAA TAG TAA
1 TAA TAA --TA-A TAA TAA TAA TAA T--AA -TAA TAA TAA TAA TAA TAA
* * * *
26359595 TAG TAA TAA -AGA TAA CAG GAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26359639 TATTTAATTT
Statistics
Matches: 168, Mismatches: 39, Indels: 40
0.68 0.16 0.16
Matches are distributed among these distances:
2 13 0.08
3 134 0.80
4 16 0.10
5 3 0.02
6 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:26361053 original size:41 final size:42
Alignment explanation
Indices: 26360998--26361121 Score: 214
Period size: 41 Copynumber: 3.0 Consensus size: 42
26360988 CGTGACTTCA
26360998 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
* *
26361040 ATTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
*
26361081 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTT
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTT
26361122 TAGCTGCTCC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 39 0.51
42 37 0.49
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (42 bp):
ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
Found at i:26361104 original size:42 final size:42
Alignment explanation
Indices: 26360993--26361120 Score: 213
Period size: 42 Copynumber: 3.1 Consensus size: 42
26360983 AGACACGTGA
*
26360993 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
* *
26361035 CTTTGATTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
*
26361076 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
26361118 CTT
1 CTT
26361121 TTAGCTGCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.49
42 40 0.51
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (42 bp):
CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
Found at i:26361730 original size:43 final size:44
Alignment explanation
Indices: 26361648--26361731 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
26361638 ACATTTAGTA
* *
26361648 TGCTCCACTACGACTTCAAGGAGATGAGACTTGTAACTTCAGTC
1 TGCTCCACTACGACTTCAAGGAGATAAGACTAGTAACTTCAGTC
* * * *
26361692 TGCTCCACTGC-ACTTCAGGGAGATAAGGCTAGTGACTTCA
1 TGCTCCACTACGACTTCAAGGAGATAAGACTAGTAACTTCA
26361732 ATATGCTTCG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 24 0.71
44 10 0.29
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (44 bp):
TGCTCCACTACGACTTCAAGGAGATAAGACTAGTAACTTCAGTC
Found at i:26370752 original size:3 final size:3
Alignment explanation
Indices: 26370741--26370971 Score: 53
Period size: 3 Copynumber: 74.7 Consensus size: 3
26370731 AAAAAAGAAG
* * * * * *
26370741 TAA TGA TAA TAA TAA TAG GAG TAA TAA TAA TAA T-A TAA TGA TGA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * *
26370789 CAA TAA TAA -AA GGAA CAA AAA TAA TAG TAA TAA TAA -AGA TATT TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA
* ** * *
26370835 TAA TAG TAA TAA TAA CGA TGA T-A TAAA TAA TAA TATA TACA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A TAA TAA
* * * *
26370882 TAA -AA GTTAGA -AA TAA AAA TAA TGGAA GTAG TAA TAA CAA TAG TAA
1 TAA TAA --TA-A TAA TAA TAA TAA T--AA -TAA TAA TAA TAA TAA TAA
* * * * *
26370928 TAC TAA TAA -AGA TAA CAG CAA GAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26370972 TATTTAATTC
Statistics
Matches: 168, Mismatches: 41, Indels: 38
0.68 0.17 0.15
Matches are distributed among these distances:
2 11 0.07
3 136 0.81
4 16 0.10
5 3 0.02
6 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:26371653 original size:14 final size:14
Alignment explanation
Indices: 26371625--26371672 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
26371615 AAATAGGTTC
26371625 TAAAT-AAAT-AAA
1 TAAATAAAATGAAA
26371637 TAAATAAAATGAAA
1 TAAATAAAATGAAA
26371651 TAACA-AAAATGAAGA
1 TAA-ATAAAATGAA-A
26371666 T-AATAAA
1 TAAATAAA
26371673 CCTTTTATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 5 0.16
13 5 0.16
14 18 0.58
15 3 0.10
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (14 bp):
TAAATAAAATGAAA
Found at i:26376433 original size:27 final size:26
Alignment explanation
Indices: 26376391--26376531 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 26
26376381 AGGAAGCGTC
*
26376391 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
** *
26376418 CTAATGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
26376445 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* **
26376472 CTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
26376499 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
26376526 CTGGTG
1 CTGGTG
26376532 ACTTCGTCAC
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
26 8 0.09
27 84 0.89
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:26376528 original size:54 final size:53
Alignment explanation
Indices: 26376391--26376531 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 53
26376381 AGGAAGCGTC
**
26376391 CTGGTGGCTATGCCACAATTATCTGATCTAATGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
26376445 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
26376499 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATATCTG-ATCTGGTG
26376532 ACTTCGTCAC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 7 0.09
54 70 0.90
55 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:26379956 original size:59 final size:59
Alignment explanation
Indices: 26379886--26380003 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
26379876 CCATGAATCT
26379886 GATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
1 GATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
26379945 GATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
1 GATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
26380004 ATAGGATACA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (59 bp):
GATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
Found at i:26380847 original size:15 final size:15
Alignment explanation
Indices: 26380744--26380838 Score: 97
Period size: 15 Copynumber: 6.4 Consensus size: 15
26380734 CAAAGATAAG
*
26380744 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
26380758 AAGAAATCCAAGACA-G
1 AAGAAATCC-AGA-ATA
*
26380774 AA-AAACCCAGAATA
1 AAGAAATCCAGAATA
26380788 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
26380803 AAGAGATCCAGAATA
1 AAGAAATCCAGAATA
* *
26380818 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
26380833 AAGAAA
1 AAGAAA
26380839 CCCAAGATAC
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
13 1 0.01
14 13 0.19
15 49 0.72
16 4 0.06
17 1 0.01
ACGTcount: A:0.59, C:0.15, G:0.17, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:26384490 original size:47 final size:47
Alignment explanation
Indices: 26384392--26384543 Score: 173
Period size: 47 Copynumber: 3.2 Consensus size: 47
26384382 TGCACATAGT
* * * ** * * *
26384392 CACATATCACATACGAGGCCATAGCCCAGCCATGGTCTTACAC-GGAT
1 CACATATCACA-CCGATGCCATATCCCAGATATGGTCTTATACAGAAG
* *
26384439 CACATATCACACTGATGTCATATCCCAGATATGGTCTTATACA-ATAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGA-AG
*
26384486 CACATATCACACCGATGCCATATCCCGGATATGGTCTTATACAGAAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
26384533 CACATATCACA
1 CACATATCACA
26384544 TTTCTCCGAA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
46 23 0.26
47 65 0.73
48 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (47 bp):
CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
Found at i:26388283 original size:42 final size:42
Alignment explanation
Indices: 26388201--26388338 Score: 145
Period size: 43 Copynumber: 3.2 Consensus size: 42
26388191 ACCTAGACGT
* * * *
26388201 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAG
1 GGTCTTACAAGAAATCAAATAT-GATGCCAATGTCCCAGACAG
* *
26388244 GGTCTTACAGGAAATCAAATATGATGCCAATGTCCCAGACAT
1 GGTCTTACAAGAAATCAAATATGATGCCAATGTCCCAGACAG
* *
26388286 GGTCTTACAAATAAATCATAAGT-CGATGCCAATGTCCCAGAC-G
1 GGTCTTAC-AAGAAATCA-AA-TATGATGCCAATGTCCCAGACAG
26388329 TGGTCTTACA
1 -GGTCTTACA
26388339 TGATAACACA
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
42 25 0.30
43 28 0.34
44 28 0.34
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACAAGAAATCAAATATGATGCCAATGTCCCAGACAG
Found at i:26388326 original size:44 final size:42
Alignment explanation
Indices: 26388195--26388338 Score: 139
Period size: 44 Copynumber: 3.4 Consensus size: 42
26388185 CCAACGACCT
* * * * *
26388195 AGACGTGGTCTTAC-ATGTAATCAAATATCGATGCCACTATCCC
1 AGACATGGTCTTACAAAGAAATC-AA-ATCGATGCCAATGTCCC
* * *
26388238 AGACAGGGTCTTAC-AGGAAATCAAATATGATGCCAATGTCCC
1 AGACATGGTCTTACAAAGAAATCAAAT-CGATGCCAATGTCCC
*
26388280 AGACATGGTCTTACAAATAAATCATAAGTCGATGCCAATGTCCC
1 AGACATGGTCTTACAAAGAAATCA-AA-TCGATGCCAATGTCCC
*
26388324 AGACGTGGTCTTACA
1 AGACATGGTCTTACA
26388339 TGATAACACA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
41 2 0.02
42 27 0.32
43 25 0.29
44 30 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACAAAGAAATCAAATCGATGCCAATGTCCC
Found at i:26395512 original size:53 final size:53
Alignment explanation
Indices: 26395444--26395548 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
26395434 TTCCTTTTTA
* * * * *
26395444 AACTTACCATTGCCATGTCTTGACATGTTCTTACGTGGTATCCTTACCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTACCTTATG
* * *
26395497 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTACCTTAT
26395549 AGTAGTTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTACCTTATG
Found at i:26397054 original size:47 final size:47
Alignment explanation
Indices: 26396894--26397162 Score: 170
Period size: 47 Copynumber: 5.7 Consensus size: 47
26396884 GGGATAAATT
* * *
26396894 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGC-TCTCATA-CATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTCATATC--GAG
* * *
26396943 TGCTGATGCATGTCCTAGACATGTCTTACACTAGCA---CA-A-CGCTTA-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATCG---AG
* * * *
26396988 GCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTC-TGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCATATCGAG
* *
26397035 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCA-CTCATTTCTGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATC-G-AG
* * *
26397082 -CTGATGCCATGTCCCAAACATGGTCTTACACTGGC-TCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTCAT-ATCGAG
*
26397129 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
26397163 GCACAAATCA
Statistics
Matches: 177, Mismatches: 22, Indels: 44
0.73 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
44 30 0.17
45 6 0.03
46 25 0.14
47 58 0.33
48 34 0.19
49 17 0.10
50 6 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATCGAG
Found at i:26397139 original size:94 final size:92
Alignment explanation
Indices: 26396894--26397162 Score: 287
Period size: 94 Copynumber: 2.9 Consensus size: 92
26396884 GGGATAAATT
* * *
26396894 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATACATGTGTGCTGATGCATGTCCT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGATGCATGTCCC
*
26396959 AGACATGTCTTACACTAGCACAACGCTTA
64 AGACATGTCTTACACTGGCACAACGCTTA
* * * *
26396988 GCCGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCCGATGCATGTCC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGC--TCTCATAAT-GTGGCCGATGCATGTCC
* ***
26397049 CAGACATGTCTTACTCTGGCACTCATTTCTGTA
63 CAGACATGTCTTACACTGGCA--CAACGCT-TA
* * * *
26397082 -CTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
26397146 ACATGTCTTACACTGGC
66 ACATGTCTTACACTGGC
26397163 GCACAAATCA
Statistics
Matches: 144, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
91 32 0.22
92 14 0.10
93 26 0.18
94 58 0.40
95 14 0.10
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (92 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
ACATGTCTTACACTGGCACAACGCTTA
Found at i:26406560 original size:27 final size:28
Alignment explanation
Indices: 26406487--26406598 Score: 110
Period size: 27 Copynumber: 4.1 Consensus size: 28
26406477 AGTATGGCTG
* *
26406487 CCAGAA-CAGATAA-TGTGACAGAGTCA
1 CCAGAATCAGATAATTGTGGCAGAGCCA
** *
26406513 CTTGATAT-AGATAATCGTGGCAGAGCCA
1 CCAGA-ATCAGATAATTGTGGCAGAGCCA
26406541 CCAGAA-CAGA-AATATGTGGCAGAGCCA
1 CCAGAATCAGATAAT-TGTGGCAGAGCCA
*
26406568 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAATCAGATAATTGTGGCAGAGCCA
26406595 CCAG
1 CCAG
26406599 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
26 8 0.12
27 45 0.65
28 16 0.23
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (28 bp):
CCAGAATCAGATAATTGTGGCAGAGCCA
Found at i:26408034 original size:24 final size:24
Alignment explanation
Indices: 26408007--26408058 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26407997 CTAGATTTCC
**
26408007 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
26408031 TCCCTTATCAACTCCTAAATCCTC
1 TCCCTTATCAACTCCTAAATCCTA
26408055 TCCC
1 TCCC
26408059 GATAGACTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.42, G:0.02, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:26419809 original size:28 final size:28
Alignment explanation
Indices: 26419777--26419846 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
26419767 TATGGTACTC
*
26419777 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
**
26419805 AGTGTGCGAGGTATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
26419833 AGTGTGCGAAATAT
1 AGTGTGCGAAATAT
26419847 CGAATGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:26422067 original size:36 final size:36
Alignment explanation
Indices: 26422020--26422091 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
26422010 TTTTTGATGT
26422020 CTGCTCTATCTCAAGTGAGTGATCCGTTGAAATTGC
1 CTGCTCTATCTCAAGTGAGTGATCCGTTGAAATTGC
26422056 CTGCTCTATCTCAAGTGAGTGATCCGTTGAAATTGC
1 CTGCTCTATCTCAAGTGAGTGATCCGTTGAAATTGC
26422092 ATAAGCCTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (36 bp):
CTGCTCTATCTCAAGTGAGTGATCCGTTGAAATTGC
Found at i:26426602 original size:14 final size:15
Alignment explanation
Indices: 26426578--26426606 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26426568 ATTTTCTGTG
26426578 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
26426593 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
26426607 ACTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:26427826 original size:45 final size:45
Alignment explanation
Indices: 26427741--26427828 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
26427731 ACGATTTTTG
* * ** *
26427741 ATATGTGTTTTCGTGTAAGACCAAGTCTGGGATGTTGGCATCGAT
1 ATATGTGGTTACGTGTAAGACCAAGTCTGGGACATCGGCATCGAT
* *
26427786 ATATGTGGTTACGTGTAATACCATGTCTGGGACATCGGCATCG
1 ATATGTGGTTACGTGTAAGACCAAGTCTGGGACATCGGCATCG
26427829 TATTTAATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (45 bp):
ATATGTGGTTACGTGTAAGACCAAGTCTGGGACATCGGCATCGAT
Found at i:26435278 original size:15 final size:15
Alignment explanation
Indices: 26435246--26435274 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26435236 ATTTTCACTG
26435246 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
26435261 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
26435275 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:26443313 original size:14 final size:13
Alignment explanation
Indices: 26443292--26443324 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
26443282 GGAATATCAA
26443292 AACAAGAATTAAG
1 AACAAGAATTAAG
26443305 AACACAGAATTAAG
1 AACA-AGAATTAAG
26443319 AACAAG
1 AACAAG
26443325 TCAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12
Consensus pattern (13 bp):
AACAAGAATTAAG
Found at i:26445777 original size:6 final size:6
Alignment explanation
Indices: 26445756--26445810 Score: 60
Period size: 6 Copynumber: 9.0 Consensus size: 6
26445746 AGGTAAAATT
26445756 AATAAA ACAT-AA AATAAA AATAAA AATAAAA AATAAA AA-ATAA AATAAA
1 AATAAA A-ATAAA AATAAA AATAAA AAT-AAA AATAAA AATA-AA AATAAA
*
26445805 ATTAAA
1 AATAAA
26445811 CATCATCATC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
5 3 0.07
6 31 0.72
7 9 0.21
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:26445788 original size:19 final size:19
Alignment explanation
Indices: 26445756--26445805 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
26445746 AGGTAAAATT
* *
26445756 AATAAAACATAAAAT-AAA
1 AATAAAATAAAAAATAAAA
26445774 AATAAAAATAAAAAATAAAA
1 AAT-AAAATAAAAAATAAAA
26445794 AATAAAATAAAA
1 AATAAAATAAAA
26445806 TTAAACATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 3 0.11
19 19 0.68
20 6 0.21
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (19 bp):
AATAAAATAAAAAATAAAA
Found at i:26448225 original size:14 final size:14
Alignment explanation
Indices: 26448191--26448240 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
26448181 AGGACTTAAG
*
26448191 GATTAATGCATAAAA
1 GATTAAT-CACAAAA
26448206 GATTAATCACAAAA
1 GATTAATCACAAAA
* *
26448220 GGTTAATCTCAAAA
1 GATTAATCACAAAA
26448234 GATTAAT
1 GATTAAT
26448241 GTAATTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 24 0.77
15 7 0.23
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (14 bp):
GATTAATCACAAAA
Found at i:26459225 original size:27 final size:27
Alignment explanation
Indices: 26459195--26459371 Score: 97
Period size: 27 Copynumber: 6.6 Consensus size: 27
26459185 ATATTGAGCC
* * *
26459195 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
26459222 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
26459249 CGCACACTTAGTGCTA-ATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
26459276 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
26459303 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * * *
26459330 CCCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
26459357 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26459372 GTACAATTTA
Statistics
Matches: 119, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
26 4 0.03
27 109 0.92
28 6 0.05
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:26459277 original size:54 final size:53
Alignment explanation
Indices: 26459195--26459371 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 53
26459185 ATATTGAGCC
* * * * *
26459195 CGCACACTCAGTGCTATACAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTA-ATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26459249 CGCACACTTAGTGCTAATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * * *
26459303 CGCACACTTAGTGCATCATATTCATTTCCCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGC-TAATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
26459357 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26459372 GTACAATTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.04
54 93 0.91
55 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTAATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26459336 original size:81 final size:81
Alignment explanation
Indices: 26459216--26459370 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
26459206 TGCTATACAA
* * * *
26459216 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTA-ATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCCCACACTTAGTGCAACATAG-TAGAATCGCA
26459280 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26459297 TCAATTCGCACACTTAGTG-CATCATATTCATTTCCCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCCCACACTTAGTGCAACATAGTAGAATCGCA
26459361 CACTTAGTGC
65 CACTTAGTGC
26459371 TGTACAATTT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 2 0.03
81 57 0.90
82 4 0.06
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCCCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26462491 original size:29 final size:30
Alignment explanation
Indices: 26462457--26462517 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26462447 TAAGTAGTCG
26462457 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
26462486 AAGCTAGTTTATATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
26462516 AA
1 AA
26462518 ACTTCCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:26467981 original size:13 final size:13
Alignment explanation
Indices: 26467965--26467997 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26467955 TTTAATTAAA
*
26467965 TTAGTTAATTAGT
1 TTAGATAATTAGT
26467978 TTAGATAATTAGT
1 TTAGATAATTAGT
26467991 TTA-ATAA
1 TTAGATAA
26467998 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:26469926 original size:42 final size:40
Alignment explanation
Indices: 26469676--26469925 Score: 392
Period size: 40 Copynumber: 6.2 Consensus size: 40
26469666 CTAAGTCCGG
* * *
26469676 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
* *
26469718 ATATATTACCAGCACGAAACCTGTGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
26469758 ATTTATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 A--TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
26469800 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
26469840 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
26469880 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
26469920 ATATAT
1 ATATAT
26469926 ATTATATCGA
Statistics
Matches: 193, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
40 123 0.64
42 70 0.36
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:26471988 original size:46 final size:46
Alignment explanation
Indices: 26471938--26472110 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
26471928 TGGTTGAGCA
* *
26471938 TCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
26471984 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
26472031 TCCAAACTCGTTGGGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
26472077 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26472111 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:26472094 original size:93 final size:93
Alignment explanation
Indices: 26471935--26472105 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
26471925 GGATGGTTGA
* * * *
26471935 GCATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
26472000 TGAGTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCGAGTTCGTGAGATGTAACCAG
* * *
26472028 GCATCCAAACTCGTTGGGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
26472093 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26472106 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACCAG
Found at i:26473019 original size:20 final size:21
Alignment explanation
Indices: 26472979--26473022 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
26472969 TATTCTGGCA
*
26472979 TTAAAAAAATCATAATAAATT
1 TTAAAAAAATAATAATAAATT
* *
26473000 TTAAAAAAATAATTATAATTT
1 TTAAAAAAATAATAATAAATT
26473021 TT
1 TT
26473023 TATTTATATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTAAAAAAATAATAATAAATT
Found at i:26479564 original size:46 final size:46
Alignment explanation
Indices: 26479514--26479686 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
26479504 TGGTTGAGCA
*
26479514 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
26479560 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
26479607 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
26479653 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26479687 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:26479670 original size:93 final size:93
Alignment explanation
Indices: 26479511--26479681 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
26479501 GGATGGTTGA
* *
26479511 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
26479576 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26479604 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
26479669 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26479682 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26488766 original size:13 final size:13
Alignment explanation
Indices: 26488748--26488772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26488738 GGTTTGTTTA
26488748 TTAAACTAATTAT
1 TTAAACTAATTAT
26488761 TTAAACTAATTA
1 TTAAACTAATTA
26488773 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:26491602 original size:6 final size:6
Alignment explanation
Indices: 26491588--26491639 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
26491578 AATATAATTG
* * * *
26491588 AAATGA AAATAA AAATCA AAAGAA AAAGAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
26491634 AAATAA
1 AAATAA
26491640 GACTAAATAC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 10 0.25
6 30 0.75
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:26497031 original size:13 final size:13
Alignment explanation
Indices: 26497013--26497037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26497003 GGTTTGTTTA
26497013 TTAAACTAATTAT
1 TTAAACTAATTAT
26497026 TTAAACTAATTA
1 TTAAACTAATTA
26497038 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:26497278 original size:30 final size:30
Alignment explanation
Indices: 26497242--26497301 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26497232 TAATCCCTAG
** *
26497242 ATTGAATAACTGAGACTTTTCTCTTATTAA
1 ATTGAATAACCAAGACTTTTCTCTAATTAA
*
26497272 ATTGAATAACCAAGTCTTTTCTCTAATTAA
1 ATTGAATAACCAAGACTTTTCTCTAATTAA
26497302 CACTCTAGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (30 bp):
ATTGAATAACCAAGACTTTTCTCTAATTAA
Found at i:26498593 original size:29 final size:30
Alignment explanation
Indices: 26498559--26498619 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26498549 CAAATAGTCG
*
26498559 AAGCTAG-TTAAATCGTACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
26498588 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
26498618 AA
1 AA
26498620 ACTTCCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:26506457 original size:46 final size:46
Alignment explanation
Indices: 26506390--26506518 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
26506380 TGTAACCCGC
* * * * *
26506390 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
26506436 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
26506482 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26506519 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26506537 original size:46 final size:45
Alignment explanation
Indices: 26506398--26506537 Score: 131
Period size: 46 Copynumber: 3.0 Consensus size: 45
26506388 GCCCATAAGC
* * ** * *
26506398 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
26506444 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
26506490 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
26506536 GA
1 GA
26506538 CATGTCACTT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:26509007 original size:40 final size:40
Alignment explanation
Indices: 26508952--26509144 Score: 232
Period size: 40 Copynumber: 4.9 Consensus size: 40
26508942 GGATATAGCT
* * * *
26508952 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
26508992 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
26509032 ACTCGCACGAATG-C--CGGGACATAGCCCGATTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
26509069 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
26509109 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
26509145 CATCCGAATA
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
37 31 0.24
38 1 0.01
39 2 0.02
40 93 0.73
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:26509066 original size:37 final size:37
Alignment explanation
Indices: 26508969--26509083 Score: 142
Period size: 37 Copynumber: 3.0 Consensus size: 37
26508959 CGAATGCCTT
* *
26508969 CGGGACATAGCCCGGTTATGGTAACTCGCACAAATGCC
1 CGGGACATAGCCCGATTATAGTAACTCGCACAAATG-C
* * *
26509007 TTCGGGGCTTAGCCCGGA-TATAGTAACTCGCACGAATGC
1 --CGGGACATAGCCC-GATTATAGTAACTCGCACAAATGC
26509046 CGGGACATAGCCCGATTATAGTAACTCGCACAAATGC
1 CGGGACATAGCCCGATTATAGTAACTCGCACAAATGC
26509083 C
1 C
26509084 TTCGGGGCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
36 2 0.03
37 32 0.49
39 1 0.02
40 29 0.45
41 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (37 bp):
CGGGACATAGCCCGATTATAGTAACTCGCACAAATGC
Found at i:26509075 original size:77 final size:76
Alignment explanation
Indices: 26508940--26509123 Score: 253
Period size: 77 Copynumber: 2.3 Consensus size: 76
26508930 TGGAATTTAA
* * *
26508940 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACGAATG-C--CGGGACATAGCCCGATTATAGTAACTCGCACAAATG
26509005 CCTTCGGGGCTTAGC
62 CCTTCGGGGCTTAGC
26509020 CCGGATATAGTAACTCGCACGAATGCCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCT
1 CCGGATATAGT-ACTCGCACGAATGCCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCT
26509085 TCGGGGCTTAGC
65 TCGGGGCTTAGC
* *
26509097 CCGGA-ATTAGTCACTAGCACAAATGCC
1 CCGGATA-TAGT-ACTCGCACGAATGCC
26509124 TTCGGGACTT
Statistics
Matches: 96, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
76 1 0.01
77 71 0.74
79 2 0.02
80 22 0.23
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (76 bp):
CCGGATATAGTACTCGCACGAATGCCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTT
CGGGGCTTAGC
Found at i:26517061 original size:40 final size:40
Alignment explanation
Indices: 26517004--26517199 Score: 234
Period size: 40 Copynumber: 4.9 Consensus size: 40
26516994 GGATATAGCT
* * * *
26517004 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
26517044 ACTCGCACAAATACCTTCGAGG-CTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCG-GGACTTAGCCCGGTTATAGTA
* *
26517084 ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * * *
26517124 ACTCGCACAAATGCCTTCGGGGCTTAGCCAGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* *
26517164 ACTAGCACAAATGGCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
26517200 CATCCGAATA
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Done.