Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 84 of 311
Found at i:26517125 original size:80 final size:79
Alignment explanation
Indices: 26516992--26517199 Score: 292
Period size: 80 Copynumber: 2.6 Consensus size: 79
26516982 CGGAATTTAA
* *
26516992 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTAACTCGCACAAATA
1 CCGGATATAG-TACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATA
26517057 CCTTCGAGGCTTAGC
65 CCTTCGAGGCTTAGC
*
26517072 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATATAGT-ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATA
*
26517137 CCTTCGGGGCTTAGC
65 CCTTCGAGGCTTAGC
* * * * *
26517152 CAGGA-ATTAGTCACTAGCACAAATGGCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTAT
26517200 CATCCGAATA
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 2 0.02
80 114 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATAC
CTTCGAGGCTTAGC
Found at i:26523055 original size:50 final size:50
Alignment explanation
Indices: 26522925--26523166 Score: 238
Period size: 50 Copynumber: 4.8 Consensus size: 50
26522915 AGCCGAAGCT
* * * * *
26522925 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
26522974 ATCCGGTACACGTAGTATCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
26523024 ATCTGATACACGCAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * * *
26523075 AT-TGAGTACGCATAGTAGCCTGCACTTACTACTACACATGCGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
26523124 AGTATGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
26523167 TACTCACAAT
Statistics
Matches: 155, Mismatches: 33, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
49 40 0.26
50 77 0.50
51 38 0.25
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:26530228 original size:50 final size:49
Alignment explanation
Indices: 26530111--26530340 Score: 221
Period size: 50 Copynumber: 4.6 Consensus size: 49
26530101 CTGATACGCA
* * * * ***
26530111 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAACCATATAATACACG
*
26530160 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATATAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAACCATATAATACACG
* * * * *
26530210 TAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTCAT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT-AA-CCATAT-AATACACG
* * * **
26530261 TAGTAGCCTGCACTTACTACTACACATGCGACTTAA-CAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC-TAACCA-TATAATACACG
*
26530311 TAGTAGCCTGCACTTAGTACTACATACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
26530341 TACTCACAAT
Statistics
Matches: 149, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
49 32 0.21
50 77 0.52
51 39 0.26
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTAACCATATAATACACG
Found at i:26535634 original size:40 final size:40
Alignment explanation
Indices: 26535564--26535679 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 40
26535554 CGCATTCAAG
* * * * *
26535564 GGTACTGAAGTACAAACAATG-GTACGTATGTGCATTTAGG
1 GGTACCGAAGTACAAAC-AGGAGCACATATGTGCATTTAGA
** *
26535604 GGTAGTGAAGTACAAATAGGAGCACATATGTGCGA-TTAGA
1 GGTACCGAAGTACAAACAGGAGCACATATGTGC-ATTTAGA
*
26535644 GGTACCGAAGTACAAACAGGGGCACATATGTGCATT
1 GGTACCGAAGTACAAACAGGAGCACATATGTGCATT
26535680 CATACAATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
39 3 0.05
40 59 0.94
41 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.23
Consensus pattern (40 bp):
GGTACCGAAGTACAAACAGGAGCACATATGTGCATTTAGA
Found at i:26538659 original size:6 final size:6
Alignment explanation
Indices: 26538638--26538716 Score: 71
Period size: 6 Copynumber: 13.8 Consensus size: 6
26538628 ATTGAAATGA
* *
26538638 AAAAAC AAAAAT --AAAT AAAAAT AAAAAT AAAAAT -AAAAT AAATAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT
*
26538684 ATAAAAT -AAAAT AAAAAT --AAAT AAGAAT AAAAA
1 A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
26538717 GATAGGAGGA
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
4 8 0.13
5 10 0.17
6 35 0.58
7 5 0.08
8 2 0.03
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:26538663 original size:5 final size:5
Alignment explanation
Indices: 26538645--26538715 Score: 76
Period size: 5 Copynumber: 13.8 Consensus size: 5
26538635 TGAAAAAACA
26538645 AAAAT -AAAT AAAAAT AAAAAT AAAAAT AAAAT -AAAT AAAAT AAAAT
1 AAAAT AAAAT -AAAAT -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
26538691 AAAAT AAAA- ATAAAT AAGAAT AAAA
1 AAAAT AAAAT A-AAAT AA-AAT AAAA
26538716 AGATAGGAGG
Statistics
Matches: 60, Mismatches: 0, Indels: 12
0.83 0.00 0.17
Matches are distributed among these distances:
4 9 0.15
5 29 0.48
6 22 0.37
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:26544103 original size:13 final size:13
Alignment explanation
Indices: 26544081--26544113 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26544071 AAGGGTTTGT
26544081 TTAT-TAAACTAA
1 TTATCTAAACTAA
26544093 TTATCTAAACTAA
1 TTATCTAAACTAA
*
26544106 TTAACTAA
1 TTATCTAA
26544114 TTTGATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:26555947 original size:24 final size:24
Alignment explanation
Indices: 26555894--26555958 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
26555884 AGCTTATGCG
* * * *
26555894 AGCCAATAACAGGTAGCTCTAAAG
1 AGCCATTAACGGGAAGCTCTAAAC
*
26555918 AGCCATTAACGGGAAGCTCTGAAC
1 AGCCATTAACGGGAAGCTCTAAAC
*
26555942 AGCCATATATCGGGAAG
1 AGCCAT-TAACGGGAAG
26555959 TCCAAGCAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 25 0.74
25 9 0.26
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.17
Consensus pattern (24 bp):
AGCCATTAACGGGAAGCTCTAAAC
Found at i:26556005 original size:25 final size:26
Alignment explanation
Indices: 26555977--26556030 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
26555967 AGTCATATTG
*
26555977 GGAAGCTC-CAGAGAGCCAT-TAATCA
1 GGAAGCTCACAAAGAGCCATATAAT-A
26556002 GGAAGCTCACAAAGAGCCATATAATA
1 GGAAGCTCACAAAGAGCCATATAATA
26556028 GGA
1 GGA
26556031 CTTTCATAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 8 0.31
26 14 0.54
27 4 0.15
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCATATAATA
Found at i:26557021 original size:26 final size:26
Alignment explanation
Indices: 26556972--26557021 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26556962 TTAATGAATT
*
26556972 ATACTAAGGTTAAATTGGTAAAAAGC
1 ATACTAAGGTTAAATTAGTAAAAAGC
* * *
26556998 ATACTAATGTTATATTAGTTAAAA
1 ATACTAAGGTTAAATTAGTAAAAA
26557022 CCAAAGTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.46, C:0.06, G:0.14, T:0.34
Consensus pattern (26 bp):
ATACTAAGGTTAAATTAGTAAAAAGC
Found at i:26558027 original size:43 final size:41
Alignment explanation
Indices: 26557875--26558028 Score: 114
Period size: 43 Copynumber: 3.6 Consensus size: 41
26557865 GGATTTCAAA
* * * *
26557875 AAGACCACGTCTGGGATGTTGGTATCGACTTTTATTTTATGTGT
1 AAGACCACGTCTGGGACGTTGGCATCGA-TTTGA--TTACGTGT
* * * * * * *
26557919 AAGACCATGTATGGAACATCGGCATCGTATTTGATTTCTTGT
1 AAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTACGTGT
*
26557961 AAGACC-CTGTCTGAGACAG-TGGCATCGATGTTGGATTACGTGT
1 AAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TT-GATTACGTGT
26558004 AAGACCACGTCTGGGACGTTGGCAT
1 AAGACCACGTCTGGGACGTTGGCAT
26558029 TATATATGTT
Statistics
Matches: 83, Mismatches: 20, Indels: 15
0.70 0.17 0.13
Matches are distributed among these distances:
41 2 0.02
42 27 0.33
43 28 0.34
44 25 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (41 bp):
AAGACCACGTCTGGGACGTTGGCATCGATTTGATTACGTGT
Found at i:26562669 original size:13 final size:13
Alignment explanation
Indices: 26562647--26562679 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26562637 AAAGGTTTGT
26562647 TTAT-TAAACTAA
1 TTATCTAAACTAA
26562659 TTATCTAAACTAA
1 TTATCTAAACTAA
*
26562672 TTAACTAA
1 TTATCTAA
26562680 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:26570286 original size:32 final size:32
Alignment explanation
Indices: 26570245--26570308 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26570235 CCAAATGTGT
26570245 TGGCTTGCTTTAATATTTGACTCATTTTGTAC
1 TGGCTTGCTTTAATATTTGACTCATTTTGTAC
26570277 TGGCTTGCTTTAATATTTGACTCATTTTGTAC
1 TGGCTTGCTTTAATATTTGACTCATTTTGTAC
26570309 AAGGCTATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50
Consensus pattern (32 bp):
TGGCTTGCTTTAATATTTGACTCATTTTGTAC
Found at i:26571007 original size:20 final size:21
Alignment explanation
Indices: 26570968--26571007 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26570958 GTTATAATGG
*
26570968 CCACACTGGCATGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
26570989 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
26571008 GTTTCAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.15, C:0.40, G:0.23, T:0.23
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:26591662 original size:25 final size:25
Alignment explanation
Indices: 26591627--26591698 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
26591617 CCCTCTCTCC
* *
26591627 AGCCATATAACTGGAAGCTCATGTG
1 AGCCGTATAACTGGAAGCTCATCTG
* *
26591652 AGCCGTGTAAC-GAGAAGCTTATCTG
1 AGCCGTATAACTG-GAAGCTCATCTG
**
26591677 AGTTGTATAACTGGAAGCTCAT
1 AGCCGTATAACTGGAAGCTCAT
26591699 AAGAGCCATA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (25 bp):
AGCCGTATAACTGGAAGCTCATCTG
Found at i:26592371 original size:21 final size:20
Alignment explanation
Indices: 26592339--26592379 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
26592329 ATTTAGCTCA
*
26592339 AATTAATACAATTCACATCC
1 AATTAATACAATTCAAATCC
*
26592359 AATTCAATTCAATTCAAATCC
1 AATT-AATACAATTCAAATCC
26592380 TAGGAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (20 bp):
AATTAATACAATTCAAATCC
Found at i:26595682 original size:54 final size:53
Alignment explanation
Indices: 26595601--26595829 Score: 178
Period size: 54 Copynumber: 4.3 Consensus size: 53
26595591 CACACCAAAA
* * * * * * *
26595601 AGATGGAAGCTTTTTTGGCAATATAAGATATGGAAGCCTTTATGGCGATCTAAG
1 AGATGGAAGCCTTTATGG-TATCTAAGAGATGAAAGCCTTTGTGGCGATCTAAG
* *
26595655 ATATGGAAGCCTTTATGGTGATCTAAGAGATGAAAGCC-TAGTTGGCGA-CTTAAG
1 AGATGGAAGCCTTTATGGT-ATCTAAGAGATGAAAGCCTTTG-TGGCGATC-TAAG
* * * **
26595709 AGATGAAAGCCTTTGTGGAAATCTAAGAGATGAAAGCCTTTGTGGAAATCTAAG
1 AGATGGAAGCCTTTATGG-TATCTAAGAGATGAAAGCCTTTGTGGCGATCTAAG
* * * * * *
26595763 AGATGGAAGCCTTTCTGGCTATCTATGAAAACG-AAGCCTTTGTGGCGATTTATG
1 AGATGGAAGCCTTTATGG-TATCTAAG-AGATGAAAGCCTTTGTGGCGATCTAAG
*
26595817 A-ATGGATGCCTTT
1 AGATGGAAGCCTTT
26595830 GTGGGGCACT
Statistics
Matches: 140, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
53 13 0.09
54 121 0.86
55 6 0.04
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (53 bp):
AGATGGAAGCCTTTATGGTATCTAAGAGATGAAAGCCTTTGTGGCGATCTAAG
Found at i:26595736 original size:81 final size:81
Alignment explanation
Indices: 26595624--26595774 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
26595614 TTTGGCAATA
* * ** * * **
26595624 TAAGATATGGAAGCCTTTATGGCGATCTAAGATATGGAAGCCTTTATGGTGATCTAAGAGATGAA
1 TAAGAGATGAAAGCCTTTATGGAAATCTAAGAGATGAAAGCCTTTATGGAAATCTAAGAGATGAA
26595689 AGCCTAGTTGGCGACT
66 AGCCTAGTTGGCGACT
* * *
26595705 TAAGAGATGAAAGCCTTTGTGGAAATCTAAGAGATGAAAGCCTTTGTGGAAATCTAAGAGATGGA
1 TAAGAGATGAAAGCCTTTATGGAAATCTAAGAGATGAAAGCCTTTATGGAAATCTAAGAGATGAA
26595770 AGCCT
66 AGCCT
26595775 TTCTGGCTAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (81 bp):
TAAGAGATGAAAGCCTTTATGGAAATCTAAGAGATGAAAGCCTTTATGGAAATCTAAGAGATGAA
AGCCTAGTTGGCGACT
Found at i:26595786 original size:27 final size:27
Alignment explanation
Indices: 26595601--26595787 Score: 171
Period size: 27 Copynumber: 6.9 Consensus size: 27
26595591 CACACCAAAA
* * *
26595601 AGATGGAAGCTTTTTTGGCAATATAAG
1 AGATGGAAGCCTTTATGGCAATCTAAG
* *
26595628 ATATGGAAGCCTTTATGGCGATCTAAG
1 AGATGGAAGCCTTTATGGCAATCTAAG
* **
26595655 ATATGGAAGCCTTTATGGTGATCTAAG
1 AGATGGAAGCCTTTATGGCAATCTAAG
* * *
26595682 AGATGAAAGCCTAGT-TGGCGA-CTTAAG
1 AGATGGAAGCCT-TTATGGCAATC-TAAG
* * *
26595709 AGATGAAAGCCTTTGTGGAAATCTAAG
1 AGATGGAAGCCTTTATGGCAATCTAAG
* * *
26595736 AGATGAAAGCCTTTGTGGAAATCTAAG
1 AGATGGAAGCCTTTATGGCAATCTAAG
* *
26595763 AGATGGAAGCCTTTCTGGCTATCTA
1 AGATGGAAGCCTTTATGGCAATCTA
26595788 TGAAAACGAA
Statistics
Matches: 139, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.01
27 135 0.97
28 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (27 bp):
AGATGGAAGCCTTTATGGCAATCTAAG
Found at i:26598932 original size:27 final size:27
Alignment explanation
Indices: 26598747--26598931 Score: 298
Period size: 27 Copynumber: 6.9 Consensus size: 27
26598737 TGAGGGTAAA
*
26598747 ATCGTCATTTTATCACATAAGGACAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
* *
26598774 ATCATCATTTTATCACATAAAGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
* *
26598801 ATCGTCATTTTATCACATAAGGGTAGT
1 ATCGTCATTTTATCACATAAGGGCAAT
26598828 ATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
*
26598855 ATCGCCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
* *
26598882 ATTGTCATTTTATCACATAAGGGTAAT
1 ATCGTCATTTTATCACATAAGGGCAAT
26598909 ATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGG
26598932 TTCAGGTACG
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (27 bp):
ATCGTCATTTTATCACATAAGGGCAAT
Found at i:26602572 original size:27 final size:27
Alignment explanation
Indices: 26602504--26602578 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
26602494 AGCAAATCAT
*
26602504 TCATTTTACCTTACAGGGGTATTACAG
1 TCATTTTACCTTATAGGGGTATTACAG
26602531 TCATTTTACCTTATAGGGGTACTT-CAG
1 TCATTTTACCTTATAGGGGTA-TTACAG
* * *
26602558 TCCTTTTACCCTATAAGGGTA
1 TCATTTTACCTTATAGGGGTA
26602579 AAATCGTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 41 0.95
28 2 0.05
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (27 bp):
TCATTTTACCTTATAGGGGTATTACAG
Found at i:26602600 original size:27 final size:27
Alignment explanation
Indices: 26602570--26602765 Score: 302
Period size: 27 Copynumber: 7.3 Consensus size: 27
26602560 CTTTTACCCT
* * *
26602570 ATAAGGGTAAAATCGTTATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
** **
26602597 ATAAGGATAATATTTTCATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
26602624 ATAAGGGCAATATCGTCATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
*
26602651 ATAAGGGCAATATCATCATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
*
26602678 ATAAGGGCAATATCATCATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
26602705 ATAAGGGCAATATCGTCATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
*
26602732 ATAAGGGAAATATCGTCATTTTATCAC
1 ATAAGGGCAATATCGTCATTTTATCAC
26602759 ATAAGGG
1 ATAAGGG
26602766 TTTAGGTACA
Statistics
Matches: 157, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (27 bp):
ATAAGGGCAATATCGTCATTTTATCAC
Found at i:26612324 original size:42 final size:42
Alignment explanation
Indices: 26612264--26612470 Score: 200
Period size: 42 Copynumber: 4.6 Consensus size: 42
26612254 TGTTTTCTCA
** * * *
26612264 ATGCCATAGTTCAACTATGGTCTTATACATCTTCACATAAT-G
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-ATCG
26612306 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCG
*
26612348 ATGCCATAGCCCAGCTATGGTCTTCCACATAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTT--AC---A-CATAT-TCACATATCG
* * *
26612397 ATGCCATAGCCCAACTATGGTCTTACACGGATAACATATCATATATCA
1 ATGCCATAGCCCAGCTATGGTCTTACAC--AT---AT-TCACATATCG
26612445 ATGCCATAGCCCAGCTATGGTCTTAC
1 ATGCCATAGCCCAGCTATGGTCTTAC
26612471 CCGAATCACA
Statistics
Matches: 141, Mismatches: 11, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
41 2 0.01
42 58 0.41
43 1 0.01
44 3 0.02
45 1 0.01
47 3 0.02
48 40 0.28
49 33 0.23
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCG
Found at i:26612453 original size:48 final size:48
Alignment explanation
Indices: 26612331--26612636 Score: 235
Period size: 48 Copynumber: 6.2 Consensus size: 48
26612321 TATGGTCTTA
* *
26612331 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCTTCCACATAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* *
26612381 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
26612429 AACATATCATATATCAATGCCATAGCCCAGCTATGGTCTTACCCGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * * *
26612477 CACATATCTCA-CT-GATGTCATATCCTAGATATGGTCTTATAC-AGT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * ** * *
26612522 -AGCATAT-ATCATACCGATGCCATATCCCAAATATGGTCTTATACGGAAG
1 CA-CATATCA-CATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * ** *
26612571 CACGTAATCACATCTCTTCGATGCCATAGCATAGCTATGGTCTTATACGGAATT
1 CACAT-ATCACA--T-ATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAA-T
26612625 CACATATCACAT
1 CACATATCACAT
26612637 GTTGCCATGG
Statistics
Matches: 203, Mismatches: 40, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
44 1 0.00
45 9 0.04
46 22 0.11
47 27 0.13
48 52 0.26
49 39 0.19
50 11 0.05
51 2 0.01
52 1 0.00
53 35 0.17
54 4 0.02
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:26614278 original size:21 final size:21
Alignment explanation
Indices: 26614254--26614299 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
26614244 CACCTAAGCG
* *
26614254 TTAAAATTTTCTGACGAAATT
1 TTAAAACTTTCTGACAAAATT
*
26614275 TTAATACTTTCTGACAAAATT
1 TTAAAACTTTCTGACAAAATT
26614296 TTAA
1 TTAA
26614300 TACTACCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (21 bp):
TTAAAACTTTCTGACAAAATT
Found at i:26614300 original size:21 final size:21
Alignment explanation
Indices: 26614261--26614303 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
26614251 GCGTTAAAAT
*
26614261 TTTCTGACGAAATTTTAATAC
1 TTTCTGACAAAATTTTAATAC
26614282 TTTCTGACAAAATTTTAATAC
1 TTTCTGACAAAATTTTAATAC
26614303 T
1 T
26614304 ACCTTATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (21 bp):
TTTCTGACAAAATTTTAATAC
Found at i:26616786 original size:113 final size:113
Alignment explanation
Indices: 26616559--26616774 Score: 371
Period size: 113 Copynumber: 1.9 Consensus size: 113
26616549 TGCCCAACCA
26616559 AAAGCGTCAATCGAGGAACAGCCTAAATTAGAACTCAAGGTACTACCTTCACATCTGAAATATGT
1 AAAGCGTCAATCGAGGAACAGCCTAAATTAGAACTCAAGGTACTACCTTCACATCTGAAATATGT
26616624 TTATTTAGGTAACTATTCTACTTTGCCTATGATTGTTTCAACAGAATT
66 TTATTTAGGTAACTATTCTACTTTGCCTATGATTGTTTCAACAGAATT
* *
26616672 AAAGCGTCAATCGAGGAGCCA-CCTAAATTAGAACTCAAGGTACTACCTTTACATCTGAAATATG
1 AAAGCGTCAATCGAGGA-ACAGCCTAAATTAGAACTCAAGGTACTACCTTCACATCTGAAATATG
* * *
26616736 TTTATTTAGGTAACTCTTTTACTTTGCCTGTGATTGTTT
65 TTTATTTAGGTAACTATTCTACTTTGCCTATGATTGTTT
26616775 TAGTAGAATT
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 95 0.98
114 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (113 bp):
AAAGCGTCAATCGAGGAACAGCCTAAATTAGAACTCAAGGTACTACCTTCACATCTGAAATATGT
TTATTTAGGTAACTATTCTACTTTGCCTATGATTGTTTCAACAGAATT
Found at i:26633915 original size:18 final size:18
Alignment explanation
Indices: 26633877--26633911 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26633867 TTACTCTTTG
*
26633877 ATTTCTTGTGTTTTATTT
1 ATTTCTTGTGCTTTATTT
26633895 ATTTCTT-TGCTTTATTT
1 ATTTCTTGTGCTTTATTT
26633912 TATTATTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.11, C:0.09, G:0.09, T:0.71
Consensus pattern (18 bp):
ATTTCTTGTGCTTTATTT
Found at i:26641057 original size:56 final size:56
Alignment explanation
Indices: 26640967--26641134 Score: 228
Period size: 56 Copynumber: 3.0 Consensus size: 56
26640957 TCTTACATAT
* * * * * *
26640967 AATCACATATCGATGCCAATGTACTAGATGTGGTCTTACTCACACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
* * *
26641023 AATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACAAATATCAA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
* * *
26641079 AATCACATATCGATGGCAACATATTAAACGTGGTCTTACTTGCACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
26641135 TCCCATGGTC
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 97 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
Found at i:26656544 original size:34 final size:33
Alignment explanation
Indices: 26656470--26656557 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 33
26656460 TTTTCTTGCA
26656470 TACTG-TACTGAAATGGGCTAAGGCCCAGACTG
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTG
* * *
26656502 TCATTGTTATTGAAATGGGCTACGGCCCAGACTG
1 T-ACTGTTACTGAAATGGGCTAAGGCCCAGACTG
*
26656536 CTACTGTTACTAGAAAAGGGCT
1 -TACTGTTACT-GAAATGGGCT
26656558 GAAACTCCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
32 1 0.02
33 3 0.07
34 32 0.70
35 10 0.22
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (33 bp):
TACTGTTACTGAAATGGGCTAAGGCCCAGACTG
Found at i:26661621 original size:58 final size:60
Alignment explanation
Indices: 26661489--26661637 Score: 179
Period size: 58 Copynumber: 2.6 Consensus size: 60
26661479 CATTAGGGTT
* *
26661489 CAAGGATACCATGTAAGACCATG-C--TA-A-GGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGCAATTGGTAAGGTTTCTAAGG
* * * *
26661544 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATGGC-ATTGGTGA-G-TTCATAATG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGCAATTGGTAAGGTTTC-TAAGG
26661602 CAAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCA
26661638 ATGGTAAGGT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
55 21 0.26
56 1 0.01
57 3 0.04
58 40 0.50
59 8 0.10
60 7 0.09
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (60 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGCAATTGGTAAGGTTTCTAAGG
Found at i:26661658 original size:49 final size:52
Alignment explanation
Indices: 26661490--26661696 Score: 192
Period size: 49 Copynumber: 3.9 Consensus size: 52
26661480 ATTAGGGTTC
**
26661490 AAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAAGG-TTCTAA-G
* * *
26661544 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATGGCATTGGTGA-GTTCATAATG
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCA----ATTGGTAAGGTTC-TAA-G
26661602 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGGTTC-AA-
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTCTAAG
* ** *
26661652 AAGGATACCACGTAAGACCATCACAAGTCATGGCAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGT
26661697 ACCCGTGTAT
Statistics
Matches: 132, Mismatches: 13, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
49 41 0.31
52 2 0.02
53 5 0.04
54 5 0.04
55 29 0.22
56 1 0.01
57 3 0.02
58 39 0.30
59 7 0.05
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTCTAAG
Found at i:26663554 original size:26 final size:26
Alignment explanation
Indices: 26663495--26663559 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
26663485 ATACCCTTGT
* *
26663495 AGGGTAAAATGACCATTTTTCCCTAA
1 AGGGTAAAATGACTATTTTGCCCTAA
** *
26663521 AGAATAAAATGACTATTTTGCCCTTA
1 AGGGTAAAATGACTATTTTGCCCTAA
*
26663547 TGGGT-AAATGACT
1 AGGGTAAAATGACT
26663560 GACTTGGGCT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
25 8 0.26
26 23 0.74
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (26 bp):
AGGGTAAAATGACTATTTTGCCCTAA
Found at i:26668017 original size:27 final size:28
Alignment explanation
Indices: 26667962--26668117 Score: 119
Period size: 27 Copynumber: 5.8 Consensus size: 28
26667952 ACTACAATGT
**
26667962 TATTTCAG-TAATTTTACAAA-CTGAAGG
1 TATTTCAGATAATTTTACAAATC-GGGGG
*
26667989 TATTTCAG-TAATTTTACAAGTCGGGGG
1 TATTTCAGATAATTTTACAAATCGGGGG
* * ***
26668016 TATTT-TGATAATTTCACAAATTAAGGG
1 TATTTCAGATAATTTTACAAATCGGGGG
* * **
26668043 TATTTC-GAAAATTTCACAAATTAGGGG
1 TATTTCAGATAATTTTACAAATCGGGGG
**
26668070 TATTTC-GATAATTTTACAACCCGGGGG
1 TATTTCAGATAATTTTACAAATCGGGGG
*
26668097 TATTTTAG-TAATTTTACAAAT
1 TATTTCAGATAATTTTACAAAT
26668118 TAGGGGTCTT
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.97
28 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (28 bp):
TATTTCAGATAATTTTACAAATCGGGGG
Found at i:26668020 original size:54 final size:54
Alignment explanation
Indices: 26667962--26668124 Score: 152
Period size: 54 Copynumber: 3.0 Consensus size: 54
26667952 ACTACAATGT
* *
26667962 TATTTC-AGTAATTTTACAAACTGAAGGTATTTCAGTAATTTTACAAGTCGGGGG
1 TATTTCGA-TAATTTTACAAACTGAAGGTATTTCAGTAATTTTACAAATCAGGGG
* * * * * *
26668016 TATTTTGATAATTTCACAAA-TTAAGGGTATTTC-GAAAATTTCACAAATTAGGGG
1 TATTTCGATAATTTTACAAACTGAA-GGTATTTCAG-TAATTTTACAAATCAGGGG
* * ** * *
26668070 TATTTCGATAATTTTACAACCCGGGGGTATTTTAGTAATTTTACAAATTAGGGG
1 TATTTCGATAATTTTACAAACTGAAGGTATTTCAGTAATTTTACAAATCAGGGG
26668124 T
1 T
26668125 CTTAACGACC
Statistics
Matches: 86, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
53 4 0.05
54 80 0.93
55 2 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
TATTTCGATAATTTTACAAACTGAAGGTATTTCAGTAATTTTACAAATCAGGGG
Found at i:26668056 original size:81 final size:81
Alignment explanation
Indices: 26667971--26668124 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
26667961 TTATTTCAGT
* **
26667971 AATTTTACAAACTGA-AGGTATTTC-AGTAATTTTACAAGTCGGGGGTATTTT-GATAATTTCAC
1 AATTTCACAAA-TGAGAGGTATTTCGA-TAATTTTACAACCCGGGGGTATTTTAG-TAATTTCAC
26668033 AAATTAAGGGTATTTCGAA
63 AAATTAAGGGTATTTCGAA
* * *
26668052 AATTTCACAAATTAGGGGTATTTCGATAATTTTACAACCCGGGGGTATTTTAGTAATTTTACAAA
1 AATTTCACAAATGAGAGGTATTTCGATAATTTTACAACCCGGGGGTATTTTAGTAATTTCACAAA
*
26668117 TTAGGGGT
66 TTAAGGGT
26668125 CTTAACGACC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 2 0.03
81 59 0.94
82 2 0.03
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (81 bp):
AATTTCACAAATGAGAGGTATTTCGATAATTTTACAACCCGGGGGTATTTTAGTAATTTCACAAA
TTAAGGGTATTTCGAA
Found at i:26669109 original size:27 final size:27
Alignment explanation
Indices: 26669071--26669122 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26669061 CCAAAACTTG
*
26669071 ACAAAATTTGTATAGCATTACCACCGT
1 ACAAAATCTGTATAGCATTACCACCGT
*
26669098 ACAAAATCTGTATGGCATTACCACC
1 ACAAAATCTGTATAGCATTACCACC
26669123 TTGTTAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.27
Consensus pattern (27 bp):
ACAAAATCTGTATAGCATTACCACCGT
Found at i:26673970 original size:28 final size:28
Alignment explanation
Indices: 26673933--26673990 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
26673923 CCAAATCAAT
26673933 TACATTATAAAATTGAAAATATGCCCAA
1 TACATTATAAAATTGAAAATATGCCCAA
*
26673961 TACATTATAAATTTGAAAATATGCCCAA
1 TACATTATAAAATTGAAAATATGCCCAA
26673989 TA
1 TA
26673991 AATGTTACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (28 bp):
TACATTATAAAATTGAAAATATGCCCAA
Found at i:26679533 original size:33 final size:33
Alignment explanation
Indices: 26679491--26679562 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
26679481 TAACTAACAG
26679491 TTCACATTTTCAATCATAATCTTATGCATGAAC
1 TTCACATTTTCAATCATAATCTTATGCATGAAC
*
26679524 TTCACATTTTCAATCATAATCTTATGTATGAAC
1 TTCACATTTTCAATCATAATCTTATGCATGAAC
26679557 TTCACA
1 TTCACA
26679563 ACTTCTTAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (33 bp):
TTCACATTTTCAATCATAATCTTATGCATGAAC
Found at i:26685065 original size:19 final size:19
Alignment explanation
Indices: 26685041--26685078 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
26685031 TGAGCCACGT
26685041 TGGGCCTAGATGGGC-CGTG
1 TGGGCCTA-ATGGGCTCGTG
26685060 TGGGCCTAATGGGCTCGTG
1 TGGGCCTAATGGGCTCGTG
26685079 GGCCTCACGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.11, C:0.21, G:0.45, T:0.24
Consensus pattern (19 bp):
TGGGCCTAATGGGCTCGTG
Found at i:26685081 original size:17 final size:18
Alignment explanation
Indices: 26685041--26685083 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
26685031 TGAGCCACGT
26685041 TGGGCCTAGATGGGCCGTG
1 TGGGCCTAGATGGGCCG-G
26685060 TGGGCCTA-ATGGGCTC-G
1 TGGGCCTAGATGGGC-CGG
26685077 TGGGCCT
1 TGGGCCT
26685084 CACGCGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.35
18 6 0.26
19 9 0.39
ACGTcount: A:0.09, C:0.23, G:0.44, T:0.23
Consensus pattern (18 bp):
TGGGCCTAGATGGGCCGG
Found at i:26694917 original size:28 final size:28
Alignment explanation
Indices: 26694885--26694940 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
26694875 CCCCAGTTTG
*
26694885 TAAAATTACCATAATGCCCCTATATGGT
1 TAAAATTACCATAATACCCCTATATGGT
*
26694913 TAAAATTACCGTAATACCCCTATATGGT
1 TAAAATTACCATAATACCCCTATATGGT
26694941 AGAATGACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (28 bp):
TAAAATTACCATAATACCCCTATATGGT
Found at i:26698355 original size:22 final size:22
Alignment explanation
Indices: 26698325--26698416 Score: 94
Period size: 22 Copynumber: 4.0 Consensus size: 22
26698315 TACGGCCTGT
26698325 AGCCGTTCTGTACAAGGCTTTC
1 AGCCGTTCTGTACAAGGCTTTC
* * * * *
26698347 AGCCATTCTGTGATACTTATGATTTAT
1 AGCCGTTC--TG-TAC-AAGGCTTT-C
26698374 AGCCGTTCTGTACAAGGCTTTC
1 AGCCGTTCTGTACAAGGCTTTC
26698396 AGCCGTTCTGTACAAGGCTTT
1 AGCCGTTCTGTACAAGGCTTT
26698417 ACTGGCAGTG
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
22 28 0.51
23 5 0.09
24 5 0.09
25 5 0.09
26 5 0.09
27 7 0.13
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (22 bp):
AGCCGTTCTGTACAAGGCTTTC
Found at i:26703653 original size:20 final size:20
Alignment explanation
Indices: 26703637--26703681 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
26703627 CACATGCCTT
26703637 TGTGGTTTGGGACATGCCCG
1 TGTGGTTTGGGACATGCCCG
* * *
26703657 TGTGGTTTGGAACACGCCCA
1 TGTGGTTTGGGACATGCCCG
26703677 TGTGG
1 TGTGG
26703682 GTAGGCCGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.13, C:0.20, G:0.38, T:0.29
Consensus pattern (20 bp):
TGTGGTTTGGGACATGCCCG
Found at i:26703911 original size:42 final size:41
Alignment explanation
Indices: 26703832--26703917 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 41
26703822 GGTGCAGACT
*
26703832 TCACACGGTCGGGACACACGCCCGTGCCTGAGGCCGTGTCGC
1 TCACACGGTCGGGACACACGCCCGTGCCTGAGCCCGTGT-GC
*
26703874 TCACACGG-CTGGGACACATGCCCGTGTCTCT-A-CCCGTGTGC
1 TCACACGGTC-GGGACACACGCCCGTG-C-CTGAGCCCGTGTGC
26703915 TCA
1 TCA
26703918 ATTTTGAACA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
41 6 0.15
42 29 0.74
43 2 0.05
44 2 0.05
ACGTcount: A:0.15, C:0.37, G:0.29, T:0.19
Consensus pattern (41 bp):
TCACACGGTCGGGACACACGCCCGTGCCTGAGCCCGTGTGC
Found at i:26714091 original size:44 final size:44
Alignment explanation
Indices: 26714004--26714094 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 44
26713994 AACTCAATTT
* *
26714004 TTAGTTTACCACTCAAACTCTGATTAGGATAAGTTATTTTAATA
1 TTAGTTTACCACTCAAACTCTGACTAGGATAAGTTATTATAATA
* * * * * *
26714048 TTAGTTTCCCACTTAAACTCTTACTAGTATAGGTTGTTATAATA
1 TTAGTTTACCACTCAAACTCTGACTAGGATAAGTTATTATAATA
26714092 TTA
1 TTA
26714095 TTTGACCTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (44 bp):
TTAGTTTACCACTCAAACTCTGACTAGGATAAGTTATTATAATA
Found at i:26716451 original size:42 final size:42
Alignment explanation
Indices: 26716357--26716458 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 42
26716347 TGCGGATACT
* * *
26716357 CAACAGCTT-TTGTGAGCAGCATCATGTAGCTTATATTCTGAC
1 CAACAGCTTGTT-TGAGCAGCATCATGTAGATTACATTCTGAA
* * *
26716399 CAATAACTTGTTTGAGTAGCATCATGTAGATTACATTCTGAA
1 CAACAGCTTGTTTGAGCAGCATCATGTAGATTACATTCTGAA
*
26716441 CAACAGCTTGTGTGAGCA
1 CAACAGCTTGTTTGAGCA
26716459 AACTCATTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
42 47 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (42 bp):
CAACAGCTTGTTTGAGCAGCATCATGTAGATTACATTCTGAA
Found at i:26719510 original size:27 final size:27
Alignment explanation
Indices: 26719470--26719523 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26719460 TGTCATGTGA
* * *
26719470 AATTGAATGGCAAATTATTGTTACATG
1 AATTCAATGGCAAATTACTATTACATG
*
26719497 AATTCAATGTCAAATTACTATTACATG
1 AATTCAATGGCAAATTACTATTACATG
26719524 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (27 bp):
AATTCAATGGCAAATTACTATTACATG
Found at i:26729802 original size:21 final size:20
Alignment explanation
Indices: 26729763--26729802 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26729753 TGGTCCGTAA
*
26729763 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
26729783 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
26729803 TCCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:26739997 original size:39 final size:40
Alignment explanation
Indices: 26739892--26740074 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
26739882 TTGAATGCTG
* * * *
26739892 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
26739931 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
26739972 TCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
26740011 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
26740051 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26740075 GAATGAGTTA
Statistics
Matches: 122, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 37 0.30
40 75 0.61
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:26740087 original size:79 final size:79
Alignment explanation
Indices: 26739926--26740111 Score: 191
Period size: 79 Copynumber: 2.4 Consensus size: 79
26739916 GTGCTAAGTG
* * * * *
26739926 ACTATATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCGAAG
1 ACTATAACCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAG
* **
26739990 GCCTTTGTGCGAGAT
65 GCCATTGAACGAGAT
* *
26740005 ACTA-ATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGA
1 ACTATA-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGT-CCGA
* *
26740068 AGG-CATTGAATGAGTT
63 AGGCCATTGAACGAGAT
*
26740084 ACTATAACCGGGCTATGTCCCGAAGGCA
1 ACTATAACCGGGCTAAGTCCCGAAGGCA
26740112 CTTGAACGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
78 4 0.04
79 77 0.87
80 8 0.09
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
ACTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGG
CCATTGAACGAGAT
Found at i:26740095 original size:39 final size:39
Alignment explanation
Indices: 26739972--26740121 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
26739962 AGTTATTAAT
* ** * *
26739972 TCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGATACT-AAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
26740011 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* *
26740051 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
26740091 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
26740122 GAGCTAAATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
39 42 0.45
40 52 0.55
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:26743893 original size:28 final size:28
Alignment explanation
Indices: 26743860--26743915 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
26743850 CCCGATTTGT
*
26743860 AAAATTACCATAATGCCCCTATATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
* *
26743888 AAAATTACCGTAATACCCCTGTATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
26743916 GAATGACGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (28 bp):
AAAATTACCATAATACCCCTATATGGTA
Found at i:26747150 original size:28 final size:28
Alignment explanation
Indices: 26747109--26747164 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
26747099 CCTGGTTTGT
*
26747109 AAAATTACCATAATGCCCCTATATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
* * *
26747137 AAAATTACCGTAATACCCTTGTATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
26747165 GAATGACGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (28 bp):
AAAATTACCATAATACCCCTATATGGTA
Found at i:26747444 original size:22 final size:22
Alignment explanation
Indices: 26747414--26747468 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
26747404 TACAACCTTT
* * *
26747414 AGCCATCCTGTCTAGGGCGTTG
1 AGCCGTCCTGTCTACGGCGTTA
*
26747436 AGCCGTCCTGTCTACGGTGTTA
1 AGCCGTCCTGTCTACGGCGTTA
*
26747458 AGTCGTCCTGT
1 AGCCGTCCTGT
26747469 TGACTTAGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.13, C:0.27, G:0.29, T:0.31
Consensus pattern (22 bp):
AGCCGTCCTGTCTACGGCGTTA
Found at i:26752609 original size:20 final size:20
Alignment explanation
Indices: 26752576--26752629 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
26752566 AATTGGGGTC
*
26752576 ACACGCCTGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
26752596 ACATGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
26752616 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
26752630 GCAGGCCGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.24, G:0.39, T:0.26
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:26754986 original size:8 final size:8
Alignment explanation
Indices: 26754973--26755004 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
26754963 AAATGCCAGA
26754973 ATTTCGGC
1 ATTTCGGC
26754981 ATTTCGGC
1 ATTTCGGC
26754989 ATTTCGGC
1 ATTTCGGC
26754997 ATTTCGGC
1 ATTTCGGC
26755005 TTTTGCCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (8 bp):
ATTTCGGC
Found at i:26764250 original size:20 final size:20
Alignment explanation
Indices: 26764227--26764264 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26764217 CACATCCAAA
* *
26764227 TACAAAATTTTTAAAATCTT
1 TACAAAATATTGAAAATCTT
26764247 TACAAAATATTGAAAATC
1 TACAAAATATTGAAAATC
26764265 GTGAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (20 bp):
TACAAAATATTGAAAATCTT
Found at i:26775022 original size:42 final size:42
Alignment explanation
Indices: 26774959--26775060 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 42
26774949 TGCAGATACT
* * * * *
26774959 CAACAGCTTCTATGAGCAGCATCATGTAGCTTATATTCTGAC
1 CAACAGCTTGTGTGAGCAGCATCATGTAGCTTACATTCCGAA
*
26775001 CAATAGCTTGTGTGAGCAGCATCATGTAGCTTACATTCCGAA
1 CAACAGCTTGTGTGAGCAGCATCATGTAGCTTACATTCCGAA
26775043 CAACAGCTTGTGTGAGCA
1 CAACAGCTTGTGTGAGCA
26775061 AACTCATTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (42 bp):
CAACAGCTTGTGTGAGCAGCATCATGTAGCTTACATTCCGAA
Found at i:26778116 original size:27 final size:27
Alignment explanation
Indices: 26778075--26778128 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26778065 TGTCATGTGA
* *
26778075 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
26778102 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
26778129 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:26778470 original size:49 final size:49
Alignment explanation
Indices: 26778375--26778470 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 49
26778365 TCTATTGTGA
* * **
26778375 GGTCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACTGGATAATT
1 GGTCACATGTGTAGTAATAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
26778424 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTAATAAGTGCAGGCTACTACGCGTACCAGATAA
26778471 CCTTGTCTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTAATAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:26781628 original size:13 final size:13
Alignment explanation
Indices: 26781610--26781649 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
26781600 AAAGTAATCG
26781610 CACACGGGCGTGT
1 CACACGGGCGTGT
26781623 CACACGGGCGTGT
1 CACACGGGCGTGT
26781636 CACACGGGCGTGT
1 CACACGGGCGTGT
26781649 C
1 C
26781650 CCTGTCGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26787074 original size:27 final size:27
Alignment explanation
Indices: 26787044--26787134 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
26787034 ATTACCAAAG
* * *
26787044 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
26787071 TA-CCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
26787097 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
*
26787124 TACCATCGATT
1 TACCCTCGATT
26787135 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 23 0.42
27 31 0.56
28 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:26787088 original size:53 final size:54
Alignment explanation
Indices: 26787031--26787134 Score: 131
Period size: 53 Copynumber: 1.9 Consensus size: 54
26787021 CTCGACTTGT
* * *
26787031 AAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTTTACC-TCGATTTAC
1 AAAATTACCAAAGTACCCTCAG-TTTACAAAATTACCGTTTTACCATCGATTTAC
***
26787084 AAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTACCATCGATT
1 AAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTACCATCGATT
26787135 GTGAAATTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
53 36 0.84
54 7 0.16
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTTTACCATCGATTTAC
Found at i:26787336 original size:27 final size:27
Alignment explanation
Indices: 26787166--26787348 Score: 113
Period size: 27 Copynumber: 6.7 Consensus size: 27
26787156 TGTAGGATAG
*
26787166 AATTACCAAAATACCAC-TGGTTTGA-GA
1 AATTACCAAAATACC-CTTGGTTT-ACAA
* *** *
26787193 AATTACCGAAATACCCTCAATTTATAA
1 AATTACCAAAATACCCTTGGTTTACAA
* *
26787220 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTGGTTTACAA
* *
26787247 AATTACAAAAATACCCTTGACTTTTTTA-AA
1 AATTACCAAAATACCCTTG----GTTTACAA
* * *
26787277 AATTA-TAGGAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGGTTTACAA
* **
26787304 AATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTACAA
* *
26787331 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
26787349 ATAGGATGAA
Statistics
Matches: 123, Mismatches: 24, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
26 6 0.05
27 94 0.76
28 2 0.02
29 1 0.01
30 16 0.13
31 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTACAA
Found at i:26788304 original size:24 final size:23
Alignment explanation
Indices: 26788246--26788318 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 23
26788236 GAGGAAGTGC
* *
26788246 TAAAAGGGCTCTACCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAG-TTAT
* *
26788270 CAGAAAGGGCTTTGCCCCAGTTAT
1 TA-AAAGGGCTATGCCCCAGTTAT
*
26788294 TAAAAGAGGCTAGGCCTCCAGTTAT
1 TAAAAG-GGCTATGCC-CCAGTTAT
26788319 ATGATAAAGT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.32
25 23 0.57
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
TAAAAGGGCTATGCCCCAGTTAT
Found at i:26788497 original size:41 final size:42
Alignment explanation
Indices: 26788439--26788529 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 42
26788429 TAGTCTCCCC
* ** *
26788439 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
26788481 -AATGGGCTTTCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
26788522 AAATGGGC
1 AAATGGGC
26788530 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 36 0.84
42 7 0.16
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:26788597 original size:31 final size:31
Alignment explanation
Indices: 26788557--26788631 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
26788547 TACAGTAAAG
26788557 GCTTCGGCCCAGTGATATGATTTATGAAAAA
1 GCTTCGGCCCAGTGATATGATTTATGAAAAA
* *
26788588 GCTTTGGCCCAGTGATATGATTTATGAAAAG
1 GCTTCGGCCCAGTGATATGATTTATGAAAAA
26788619 GCTTCGGCCCAGT
1 GCTTCGGCCCAGT
26788632 AACCGTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (31 bp):
GCTTCGGCCCAGTGATATGATTTATGAAAAA
Found at i:26790534 original size:9 final size:9
Alignment explanation
Indices: 26790520--26790549 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
26790510 TTTGAAATCA
26790520 AATGTTTTG
1 AATGTTTTG
26790529 AATGTTTTG
1 AATGTTTTG
26790538 AATGTTTTG
1 AATGTTTTG
26790547 AAT
1 AAT
26790550 TGTATGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (9 bp):
AATGTTTTG
Found at i:26800915 original size:40 final size:39
Alignment explanation
Indices: 26800860--26801051 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 39
26800850 CGGATGATAA
* *
26800860 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26800899 CCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
* **
26800940 CCGGGCTATGTCCCGAAGGCATTCATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
26800980 CCGGGCTAAG-CCTCGAAGGCATTTGTGCGAGTTACCATAA-
1 CCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTA-C-TAAT
* * *
26801020 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26801052 AGCTATATCC
Statistics
Matches: 132, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.02
40 123 0.93
41 5 0.04
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26800989 original size:80 final size:80
Alignment explanation
Indices: 26800856--26801063 Score: 305
Period size: 80 Copynumber: 2.6 Consensus size: 80
26800846 TATTCGGATG
* ** * *
26800856 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATCCCGGGCTAAGCCCCGAAGGC
1 ATAACCGGGCTATGTCCCGAAGGCATTCATGCGAGTTACTATAT-CCGGGCTAAGCCCCGAAGGC
*
26800920 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACC
*
26800936 ATAACCGGGCTATGTCCCGAAGGCATTCATGCGAGTTACTATATCCGGGCTAAGCCTCGAAGGCA
1 ATAACCGGGCTATGTCCCGAAGGCATTCATGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
26801001 TTTGTGCGAGTTACC
66 TTTGTGCGAGTTACC
26801016 ATAACCGGGCTATGTCCCGAAGGCATTCGA-GCGAG-TAGCTATATCCGG
1 ATAACCGGGCTATGTCCCGAAGGCATTC-ATGCGAGTTA-CTATATCCGG
26801064 TTAAATTCCG
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
79 2 0.02
80 113 0.96
81 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTATGTCCCGAAGGCATTCATGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
TTTGTGCGAGTTACC
Found at i:26811379 original size:24 final size:24
Alignment explanation
Indices: 26811352--26811399 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26811342 TTTGAAGATG
26811352 ATACCCAATATTGCTTCTTCCTTA
1 ATACCCAATATTGCTTCTTCCTTA
*
26811376 ATACCCAATATTGTTTCTTCCTTA
1 ATACCCAATATTGCTTCTTCCTTA
26811400 CTCTGCATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.04, T:0.44
Consensus pattern (24 bp):
ATACCCAATATTGCTTCTTCCTTA
Found at i:26818932 original size:26 final size:24
Alignment explanation
Indices: 26818888--26818937 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
26818878 ATTTGTTTTA
*
26818888 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
26818912 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
26818938 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:26828802 original size:23 final size:23
Alignment explanation
Indices: 26828734--26828853 Score: 77
Period size: 23 Copynumber: 5.1 Consensus size: 23
26828724 TTTCGAGATA
26828734 TGAA-CAGTAAGCT-CTATTGAGC
1 TGAATCAGTAAGCTCCTA-TGAGC
* **
26828756 TGAAAT-GGTAAGCT-CTGACAAGC
1 TG-AATCAGTAAGCTCCT-ATGAGC
*
26828779 TGAATCAGTAAGCTCCTACGAGC
1 TGAATCAGTAAGCTCCTATGAGC
* **
26828802 TGAGAACAGTTTGCTCCTATGAGC
1 TGA-ATCAGTAAGCTCCTATGAGC
*
26828826 TGATATATCAGTAAGCTCATATGAGC
1 TG--A-ATCAGTAAGCTCCTATGAGC
26828852 TG
1 TG
26828854 TGGTGAGTCA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
22 5 0.07
23 31 0.41
24 21 0.28
26 19 0.25
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (23 bp):
TGAATCAGTAAGCTCCTATGAGC
Found at i:26828848 original size:26 final size:25
Alignment explanation
Indices: 26828780--26828853 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 25
26828770 CTGACAAGCT
*
26828780 GAATCAGTAAGCTCCTACGAGCTGA
1 GAATCAGTAAGCTCCTATGAGCTGA
**
26828805 GAA-CAGTTTGCTCCTATGAGCTGA
1 GAATCAGTAAGCTCCTATGAGCTGA
* *
26828829 TATATCAGTAAGCTCATATGAGCTG
1 GA-ATCAGTAAGCTCCTATGAGCTG
26828854 TGGTGAGTCA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 19 0.47
25 4 0.10
26 17 0.43
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (25 bp):
GAATCAGTAAGCTCCTATGAGCTGA
Found at i:26829480 original size:21 final size:22
Alignment explanation
Indices: 26829456--26829522 Score: 57
Period size: 28 Copynumber: 2.9 Consensus size: 22
26829446 ACTAGTTTAA
26829456 CCATCAACAATTATTCAAAATC
1 CCATCAACAATTATTCAAAATC
26829478 CATCATCAACTAACAATTATTCAAAAT-
1 C--CAT---C-AACAATTATTCAAAATC
*
26829505 CCATCATCAATTA-TCAAA
1 CCATCAACAATTATTCAAA
26829523 TTACTCAAGC
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
20 5 0.13
21 7 0.18
22 2 0.05
24 3 0.08
25 3 0.08
27 2 0.05
28 16 0.42
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.28
Consensus pattern (22 bp):
CCATCAACAATTATTCAAAATC
Found at i:26829493 original size:28 final size:28
Alignment explanation
Indices: 26829461--26829514 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
26829451 TTTAACCATC
26829461 AACAATTATTCAAAATCCATCATCAACT
1 AACAATTATTCAAAATCCATCATCAACT
26829489 AACAATTATTCAAAATCCATCATCAA
1 AACAATTATTCAAAATCCATCATCAA
26829515 TTATCAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (28 bp):
AACAATTATTCAAAATCCATCATCAACT
Found at i:26842717 original size:46 final size:46
Alignment explanation
Indices: 26842650--26842773 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
26842640 ATAATCTCAC
* * * * * *
26842650 CCATAATTAACTCAGAACACAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAATGAACTCGGAACACAACTCACCGAGCTCCGATGCTTGCAT
*
26842696 CCATAATGAACTCGGAACACAACTCACCGAGTTCCGATGCTTGCAT
1 CCATAATGAACTCGGAACACAACTCACCGAGCTCCGATGCTTGCAT
* * *
26842742 CTATAAGTGAACTCGAAACGCAACTCACCGAG
1 CCATAA-TGAACTCGGAACACAACTCACCGAG
26842774 TTTGGATGCC
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 44 0.66
47 23 0.34
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAATGAACTCGGAACACAACTCACCGAGCTCCGATGCTTGCAT
Found at i:26844430 original size:32 final size:32
Alignment explanation
Indices: 26844389--26844451 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
26844379 TAAATTGATG
*
26844389 ATTACATTCATTTATATAGATTCAGATAACAT
1 ATTAAATTCATTTATATAGATTCAGATAACAT
**
26844421 ATTAAATTCATTTATATTTATTCAGATAACA
1 ATTAAATTCATTTATATAGATTCAGATAACA
26844452 CAAATTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (32 bp):
ATTAAATTCATTTATATAGATTCAGATAACAT
Found at i:26852858 original size:103 final size:103
Alignment explanation
Indices: 26852696--26852960 Score: 444
Period size: 103 Copynumber: 2.6 Consensus size: 103
26852686 TTGTATATAA
** *
26852696 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
26852760 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
26852800 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
26852864 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
** *
26852902 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
26852961 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
102 31 0.20
103 97 0.63
104 25 0.16
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:26852912 original size:26 final size:26
Alignment explanation
Indices: 26852877--26852928 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26852867 AATGTGAAAG
*
26852877 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
26852903 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
26852929 TTCAGCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:26859819 original size:26 final size:26
Alignment explanation
Indices: 26859784--26859834 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26859774 ATGTGAAAAG
*
26859784 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
26859810 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
26859835 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:26859927 original size:27 final size:27
Alignment explanation
Indices: 26859885--26859936 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
26859875 GAAATGTGAA
*
26859885 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
26859912 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
26859937 GATTCAGCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:26859953 original size:103 final size:104
Alignment explanation
Indices: 26859705--26859970 Score: 430
Period size: 104 Copynumber: 2.6 Consensus size: 104
26859695 TTGTATATAA
** *
26859705 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
26859769 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
26859809 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
26859874 TGAAATGTG-AAA-GGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
** *
26859912 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
26859971 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
102 20 0.13
103 63 0.41
104 68 0.45
105 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:26862069 original size:21 final size:21
Alignment explanation
Indices: 26862023--26862068 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
26862013 TATTTTTATT
26862023 TTTTAGAGTTTAAATTTTAAA
1 TTTTAGAGTTTAAATTTTAAA
*
26862044 TTTTAGAGTTTAGGATTTTAAA
1 TTTTAGAGTTTA-AATTTTAAA
26862066 TTT
1 TTT
26862069 AAGCTCGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (21 bp):
TTTTAGAGTTTAAATTTTAAA
Found at i:26864593 original size:48 final size:48
Alignment explanation
Indices: 26864458--26864735 Score: 177
Period size: 48 Copynumber: 5.8 Consensus size: 48
26864448 TCACACATCG
* * * * * *
26864458 ATGCCAATAGCCCAGCTATGGTCTTACAC-GAAGTCTCATGA-CGGTGCCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGGGA-TCTCAT-ATCGATGTCA
* * * * * *
26864507 ATGCCATGTCCCATACATGATCTTATAGGGGA-CATCATATCGATG-CTA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATC-TCATATCGATGTC-A
* * *
26864555 ATGCCATATCCCAGATATGGCCTTACATGGGATCTCATATTGATGTCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGTCA
* * ** * * * *
26864603 ATGCCATGTCCCGGACGTGGTCTTATACGGGATCTCTTATCAATGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGTCA
* * * * * *
26864651 ATGTCATATCCCAGATATAGTCTTACACGGGTTCTCATCTCGATGCCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGTCA
* * * * *
26864699 ATTCCATATGCAAAATATGGTCTTATACGGGATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCA
26864736 ATACTCACAT
Statistics
Matches: 173, Mismatches: 50, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
47 3 0.02
48 161 0.93
49 9 0.05
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGTCA
Found at i:26866685 original size:17 final size:19
Alignment explanation
Indices: 26866665--26866703 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
26866655 TAACTACTCG
26866665 AAATC-TTT-CAATATCTC
1 AAATCATTTCCAATATCTC
*
26866682 AAATCATTTCCACTATCTC
1 AAATCATTTCCAATATCTC
26866701 AAA
1 AAA
26866704 CTGAGATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 3 0.16
19 11 0.58
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATCATTTCCAATATCTC
Found at i:26871347 original size:95 final size:96
Alignment explanation
Indices: 26871192--26871421 Score: 241
Period size: 95 Copynumber: 2.4 Consensus size: 96
26871182 ATAACGGTGC
* * ** *
26871192 CGATGCCATGTCCCAAACTTGGTCTTATACGGGGCCTCATATTGATACCAATTCCATATCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCATATCGATACCAATTCCATATCCCAGA
* *
26871257 TATGGT-TTACATGGGATCTCATAGTAATGTT
66 TATGGTCTGACACGGGATCTCATAGTAATG-T
* * * ** * *
26871288 C-ATGCCATGTCCCAGACGTGGTCTTATACGGGATCTCTTATCGATGCTGATGT-CGTATCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCATATCGATACCAAT-TCCATATCCCAG
** *
26871351 ATATGGTCTGACACGGGATCTCATCTTGATGT
65 ATATGGTCTGACACGGGATCTCATAGTAATGT
** *
26871383 CGATGCCATACCCCAGATATGGTCTTATACGGGATCTCA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCA
26871422 ATACTCACAT
Statistics
Matches: 110, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
95 58 0.53
96 52 0.47
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCATATCGATACCAATTCCATATCCCAGA
TATGGTCTGACACGGGATCTCATAGTAATGT
Found at i:26871358 original size:48 final size:48
Alignment explanation
Indices: 26871211--26871421 Score: 151
Period size: 48 Copynumber: 4.4 Consensus size: 48
26871201 GTCCCAAACT
** * ** * * *
26871211 TGGTCTTATACGGGGCCTCATATTGATACCAATTCCATATCCCAGATA
1 TGGTCTTATACGGGATCTCATATCGATGTCGATGCCATACCCCAGATA
* * * ** **
26871259 TGGT-TTACATGGGATCTCATAGT-AATGTTC-ATGCCATGTCCCAGACG
1 TGGTCTTATACGGGATCTCATA-TCGATG-TCGATGCCATACCCCAGATA
* * * * *
26871306 TGGTCTTATACGGGATCTCTTATCGATG-CTGATGTCGTATCCTAGATA
1 TGGTCTTATACGGGATCTCATATCGATGTC-GATGCCATACCCCAGATA
* * * *
26871354 TGGTCTGACACGGGATCTCATCTTGATGTCGATGCCATACCCCAGATA
1 TGGTCTTATACGGGATCTCATATCGATGTCGATGCCATACCCCAGATA
26871402 TGGTCTTATACGGGATCTCA
1 TGGTCTTATACGGGATCTCA
26871422 ATACTCACAT
Statistics
Matches: 124, Mismatches: 32, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
46 1 0.01
47 33 0.27
48 89 0.72
49 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (48 bp):
TGGTCTTATACGGGATCTCATATCGATGTCGATGCCATACCCCAGATA
Found at i:26871406 original size:96 final size:95
Alignment explanation
Indices: 26871248--26871420 Score: 231
Period size: 96 Copynumber: 1.8 Consensus size: 95
26871238 ACCAATTCCA
* * ** *
26871248 TATCCCAGATATGGTTTACATGGGATCTCATAGTAATGTTCATGCCATGTCCCAGACGTGGTCTT
1 TATCCCAGATATGGTTGACACGGGATCTCATAGTAATGTTCATGCCATACCCCAGACATGGTCTT
26871313 ATACGGGATCTCTTATCGATGCTGATGTCG
66 ATACGGGATCTCTTATCGATGCTGATGTCG
* ** * *
26871343 TATCCTAGATATGGTCTGACACGGGATCTCATCTTGATG-TCGATGCCATACCCCAGATATGGTC
1 TATCCCAGATATGGT-TGACACGGGATCTCATAGTAATGTTC-ATGCCATACCCCAGACATGGTC
26871407 TTATACGGGATCTC
64 TTATACGGGATCTC
26871421 AATACTCACA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
95 16 0.24
96 50 0.76
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (95 bp):
TATCCCAGATATGGTTGACACGGGATCTCATAGTAATGTTCATGCCATACCCCAGACATGGTCTT
ATACGGGATCTCTTATCGATGCTGATGTCG
Found at i:26873860 original size:50 final size:47
Alignment explanation
Indices: 26873737--26874097 Score: 196
Period size: 47 Copynumber: 7.7 Consensus size: 47
26873727 GGGTATGATT
* * * *
26873737 CCGACGCCATGTCCCAGACATGGTCTTACATTG-GCTCATCTATCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCCCTCATATATC-AG
* *
26873784 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCCATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCCCTCATATAT-CA-G
*
26873834 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCCATA-AGT-A-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG-C-CCT-CATATA-TCAG
* * * * * *
26873882 CCGATGCCATGTCCTAAACATGGTCTTACACTG-ACACATCTCGT-AG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCCCTCATAT-ATCAG
* * * * *
26873928 CCAATG-TATGTCCCAGACAT-GTCTTACACTG-GCTTACT-TCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCCCTCA-TATATC-A-G
* * ** * *
26873974 CCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTTGTCT-TAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCCCTCATATATCA-G
* ** * *
26874020 TCGATGCCATGTCCCAGACATTTTCTTACGCTGCCTCTCATAATAT-GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCC-CTCAT-ATATCAG
*
26874068 TCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
26874098 AGCACACAAA
Statistics
Matches: 252, Mismatches: 39, Indels: 47
0.75 0.12 0.14
Matches are distributed among these distances:
43 1 0.00
44 17 0.07
45 16 0.06
46 48 0.19
47 61 0.24
48 55 0.22
49 11 0.04
50 35 0.14
51 3 0.01
52 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGCCCTCATATATCAG
Found at i:26881722 original size:46 final size:47
Alignment explanation
Indices: 26881592--26881852 Score: 204
Period size: 46 Copynumber: 5.6 Consensus size: 47
26881582 AGGTTGACGC
* * *
26881592 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGT-GTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CGTAGCCGATG
26881641 CCATGTCCCAGACATGGTCTTACACT-GAC--ACATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCGTAGCCGATG
*
26881687 CATGTCCTAGACAT-GTCTTACACTAGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTA-GCCGATG
* * * *
26881733 CATGCCCCAG-CAT-GTTTTACACTAGCTCT-CGTCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCGTA-GCCGATG
* * * * * *
26881778 CCATGTCCCAGACATGGTCTTACGCTGGCTTTCATAAT-ATGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTTACAT-CTCGTAGCCGATG
* *
26881826 CATGTTCTAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
26881853 ACACAAATAA
Statistics
Matches: 176, Mismatches: 21, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
44 11 0.06
45 47 0.27
46 55 0.31
47 16 0.09
48 20 0.11
49 2 0.01
50 25 0.14
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTAGCCGATG
Found at i:26881932 original size:26 final size:26
Alignment explanation
Indices: 26881896--26881948 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26881886 CCGATTTATT
26881896 TCCTAAGGTTCAAACGGGAGTTCTAC
1 TCCTAAGGTTCAAACGGGAGTTCTAC
26881922 TCCTAAGGTTCAAACGGGAGTTCTAC
1 TCCTAAGGTTCAAACGGGAGTTCTAC
26881948 T
1 T
26881949 ATCTCAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
TCCTAAGGTTCAAACGGGAGTTCTAC
Found at i:26883668 original size:18 final size:19
Alignment explanation
Indices: 26883645--26883683 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26883635 CACTTTTAAT
*
26883645 TATTTTAT-AATATTTTTA
1 TATTTTATAAATAATTTTA
*
26883663 TATTTTCTAAATAATTTTA
1 TATTTTATAAATAATTTTA
26883682 TA
1 TA
26883684 CAAATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTTATAAATAATTTTA
Found at i:26884222 original size:30 final size:30
Alignment explanation
Indices: 26884188--26884249 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26884178 CATATATGAA
26884188 ATAAATTTTAAATATTTTTAAGTAATTAAT
1 ATAAATTTTAAATATTTTTAAGTAATTAAT
* *
26884218 ATAAATTTTATATATTTTTACGTAATTAAT
1 ATAAATTTTAAATATTTTTAAGTAATTAAT
26884248 AT
1 AT
26884250 CTTAAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (30 bp):
ATAAATTTTAAATATTTTTAAGTAATTAAT
Found at i:26887624 original size:19 final size:17
Alignment explanation
Indices: 26887573--26887624 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 17
26887563 TTTTAATGGT
26887573 TTTTA-TTAATTTTTAA
1 TTTTATTTAATTTTTAA
26887589 TTTTATTTGAACTTTTTAAA
1 TTTTATTT-AA-TTTTT-AA
26887609 TTTTATTTAATATTTT
1 TTTTATTTAAT-TTTT
26887625 TATAAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 3 0.10
19 11 0.35
20 10 0.32
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTATTTAATTTTTAA
Found at i:26887633 original size:22 final size:20
Alignment explanation
Indices: 26887582--26887635 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
26887572 TTTTTATTAA
*
26887582 TTTTT-AATTTTATTTGAAC
1 TTTTTAAATTTTATTTAAAC
*
26887601 TTTTTAAATTTTATTTAATAT
1 TTTTTAAATTTTATTTAA-AC
26887622 TTTTATAAATTTTA
1 TTTT-TAAATTTTA
26887636 ATAATGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 5 0.17
20 11 0.37
21 5 0.17
22 9 0.30
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTTAAATTTTATTTAAAC
Found at i:26887658 original size:19 final size:19
Alignment explanation
Indices: 26887623--26887673 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
26887613 ATTTAATATT
26887623 TTTATAAAT-TTTAATAATGTA
1 TTTA-AAATATTT-ATAAT-TA
*
26887644 TTTAAAA-ATTTATAATTT
1 TTTAAAATATTTATAATTA
26887662 TTTAAAATATTT
1 TTTAAAATATTT
26887674 TTTAACTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 8 0.30
19 9 0.33
20 6 0.22
21 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTAAAATATTTATAATTA
Found at i:26888799 original size:22 final size:22
Alignment explanation
Indices: 26888769--26888815 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
26888759 TTTGGTATTT
26888769 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
26888791 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
26888813 GGG
1 GGG
26888816 TTCAAAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.40, T:0.23
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:26890059 original size:31 final size:32
Alignment explanation
Indices: 26889992--26890059 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
26889982 TAATGTCCAA
* *
26889992 TTGATATTGAGCTGAATCGTAAGTATTTGAGC
1 TTGAAATTGAGCTGAATCGTAACTATTTGAGC
*
26890024 -TGAAATTGAGCTGATTCG-AACTCA-TTGAGC
1 TTGAAATTGAGCTGAATCGTAACT-ATTTGAGC
26890054 TTGAAA
1 TTGAAA
26890060 GGAGCTGGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
30 9 0.29
31 22 0.71
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (32 bp):
TTGAAATTGAGCTGAATCGTAACTATTTGAGC
Found at i:26893771 original size:22 final size:22
Alignment explanation
Indices: 26893741--26893787 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
26893731 TTTGGTATTT
26893741 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
26893763 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
26893785 GGG
1 GGG
26893788 TTCAAAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.40, T:0.23
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:26896636 original size:31 final size:31
Alignment explanation
Indices: 26896593--26896664 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
26896583 AGGTTTTTCC
*
26896593 ATGAACAT-TTTAGTATGGTTTTTTAAGCTTA
1 ATGAA-ATATTTAGTATGGTTTTTGAAGCTTA
*
26896624 ATGAAATATTTAGTATGGTTTTTGAAGTTTA
1 ATGAAATATTTAGTATGGTTTTTGAAGCTTA
26896655 ATGAAATATT
1 ATGAAATATT
26896665 ATTAGTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (31 bp):
ATGAAATATTTAGTATGGTTTTTGAAGCTTA
Found at i:26901145 original size:46 final size:46
Alignment explanation
Indices: 26901095--26901270 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
26901085 TGGTTGAGCA
26901095 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
26901141 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT--G
*
26901186 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26901234 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26901271 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 7 0.06
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 6 0.05
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26901251 original size:93 final size:93
Alignment explanation
Indices: 26901092--26901263 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
26901082 GGATGGTTGA
* *
26901092 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26901157 TGAGTCCGAGTTCGTGAGATGTAAATAG
66 TGAGTCCGAGTTCGTGAGATGTAAATAG
*
26901185 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26901250 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26901264 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAAATAG
Found at i:26915321 original size:34 final size:34
Alignment explanation
Indices: 26915276--26915342 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
26915266 TAATCTGACA
*
26915276 CTTTTTCCTTTCCCCAATCTAAATCCGTACGATG
1 CTTTTTCCTTTCCCCAATCTAAATCAGTACGATG
* **
26915310 CTTTTTTCTTTCCCTGATCTAAATCAGTACGAT
1 CTTTTTCCTTTCCCCAATCTAAATCAGTACGAT
26915343 CAAATAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (34 bp):
CTTTTTCCTTTCCCCAATCTAAATCAGTACGATG
Found at i:26931231 original size:21 final size:21
Alignment explanation
Indices: 26931207--26931249 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26931197 TCGTGATGTA
26931207 AATCTTGGGTCTCTATCAGAC
1 AATCTTGGGTCTCTATCAGAC
26931228 AATCTTGGGTCTCTATCAGAC
1 AATCTTGGGTCTCTATCAGAC
26931249 A
1 A
26931250 CTATTGACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (21 bp):
AATCTTGGGTCTCTATCAGAC
Found at i:26935925 original size:40 final size:40
Alignment explanation
Indices: 26935801--26936011 Score: 250
Period size: 40 Copynumber: 5.3 Consensus size: 40
26935791 CATTTGAATG
* *
26935801 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
26935841 TTATCCGGGTTAAGA-CCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
26935880 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
26935920 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
26935960 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
26936000 ATATCC-GGCTAA
1 ATATCCGGGCTAA
26936012 ATTCCGAAGA
Statistics
Matches: 151, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 44 0.29
40 104 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:26944858 original size:40 final size:40
Alignment explanation
Indices: 26944754--26944964 Score: 250
Period size: 40 Copynumber: 5.3 Consensus size: 40
26944744 CATTTGAATG
*
26944754 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
26944794 TTTTCC-GGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
26944833 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
26944873 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
26944913 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
26944953 ATATCC-GGCTAA
1 ATATCCGGGCTAA
26944965 ATTCCGAAGA
Statistics
Matches: 149, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 42 0.28
40 104 0.70
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:26955489 original size:15 final size:15
Alignment explanation
Indices: 26955464--26955497 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
26955454 AAATTAGTAT
26955464 TTTTCATTTTTATTTA
1 TTTTCATTTTTA-TTA
26955480 TTTT-ATTTTTATTA
1 TTTTCATTTTTATTA
26955494 TTTT
1 TTTT
26955498 TAGAATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 7 0.39
16 4 0.22
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCATTTTTATTA
Found at i:26955498 original size:15 final size:15
Alignment explanation
Indices: 26955461--26955499 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
26955451 ATAAAATTAG
26955461 TATTTTTCATTTTTAT
1 TATTTTT-ATTTTTAT
26955477 T-TATTTTATTTTTAT
1 TAT-TTTTATTTTTAT
26955492 TATTTTTA
1 TATTTTTA
26955500 GAATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTTTTATTTTTAT
Found at i:26955618 original size:18 final size:18
Alignment explanation
Indices: 26955595--26955638 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
26955585 AATAGTTTCA
26955595 TTAAAAATATGAATT-ATT
1 TTAAAAATAT-AATTAATT
*
26955613 TT-AAAATATATTTAATT
1 TTAAAAATATAATTAATT
26955630 TTAAAAATA
1 TTAAAAATA
26955639 GGAAGAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 12 0.52
18 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TTAAAAATATAATTAATT
Found at i:26959905 original size:55 final size:55
Alignment explanation
Indices: 26959779--26959907 Score: 168
Period size: 55 Copynumber: 2.3 Consensus size: 55
26959769 ATTTCCTTAG
* *
26959779 CCCGTGTGCAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTG
1 CCCGTGTACAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTA
* *** * * * *
26959834 CCCATGTACGGTACTGACTTTAAGACACGGCCATGGTACACGCCCGTGTGGCCTA
1 CCCGTGTACAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTA
26959889 CCCGTGTACAACACTGACT
1 CCCGTGTACAACACTGACT
26959908 AAAAAGTTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.22, C:0.35, G:0.23, T:0.19
Consensus pattern (55 bp):
CCCGTGTACAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTA
Found at i:26960884 original size:47 final size:46
Alignment explanation
Indices: 26960668--26960981 Score: 223
Period size: 47 Copynumber: 6.7 Consensus size: 46
26960658 GGATAAGTTA
*
26960668 CCGATGCCATGTCCCAGACATAGTCTTACACTGGCTAGCATCATCGAGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCATCGAGG
* * * * *
26960717 TCGATGCCATGTCCCAGACATGGTCTTATACT--CTTGTAT-ATACG-TG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAT-CATCAT-CGAGG
* * * * **
26960763 CTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTTTTA-G
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCGAGG
* * *
26960807 TCGATGCGTGTCCCAGACATGTCTTCCACTGGCTATCATCATCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCATCGAGG
* * * *
26960854 CCGGTGCATGTCCGAGACATGTCTTACACTGGCACTCATC-TCTACG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCATCGAGG
* * * * **
26960900 CCGATTCCATGTCCCAGACATGGTATTATACCGGCA-CA-CATAATATGG
1 CCGA-TGCATGTCCCAGACAT-GTCTTACACTGGCATCATCAT-CGA-GG
26960948 CCGATGCATGTCCCAGACATGTCTTACACTGGCA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA
26960982 CACAAGAAAT
Statistics
Matches: 206, Mismatches: 44, Indels: 33
0.73 0.16 0.12
Matches are distributed among these distances:
44 39 0.19
45 17 0.08
46 35 0.17
47 70 0.34
48 16 0.08
49 29 0.14
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCGAGG
Found at i:26969191 original size:40 final size:40
Alignment explanation
Indices: 26969146--26969251 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
26969136 ATGACATATT
26969146 AGCTAAATATGGCACTTAGTGTGCGGTTTG-GTATAACTTC
1 AGCTAAATATGGCACTTAGTGTGCGGTTTGAG-ATAACTTC
* * * **
26969186 GGCTAAATTTGGCACTTAGTGTGCGATTTGAGATTGCTTC
1 AGCTAAATATGGCACTTAGTGTGCGGTTTGAGATAACTTC
** *
26969226 AGCTACGTATAGCACTTAGTGTGCGG
1 AGCTAAATATGGCACTTAGTGTGCGG
26969252 GACATCAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (40 bp):
AGCTAAATATGGCACTTAGTGTGCGGTTTGAGATAACTTC
Found at i:26985976 original size:11 final size:10
Alignment explanation
Indices: 26985944--26986000 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
26985934 TACGTGGGAT
26985944 ATGATAT-AC
1 ATGATATGAC
26985953 ATGAT-TGAC
1 ATGATATGAC
26985962 ATGATATGCAC
1 ATGATATG-AC
*
26985973 ATGATATG-T
1 ATGATATGAC
26985982 ATGATATGCAC
1 ATGATATG-AC
*
26985993 ATGGTATG
1 ATGATATG
26986001 TATGAAATGC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 1 0.03
9 20 0.50
10 2 0.05
11 17 0.43
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (10 bp):
ATGATATGAC
Found at i:26985976 original size:20 final size:20
Alignment explanation
Indices: 26985951--26986017 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
26985941 GATATGATAT
26985951 ACATGAT-TGACATGATATGC
1 ACATGATATG-CATGATATGC
*
26985971 ACATGATATGTATGATATGC
1 ACATGATATGCATGATATGC
* * *
26985991 ACATGGTATGTATGAAATGC
1 ACATGATATGCATGATATGC
*
26986011 ATATGAT
1 ACATGAT
26986018 GTAATCATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 39 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:26986095 original size:25 final size:25
Alignment explanation
Indices: 26986067--26986204 Score: 149
Period size: 25 Copynumber: 5.4 Consensus size: 25
26986057 GTTGAAGTGC
26986067 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTATGCCCCAGTTTATTG
*
26986092 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGC-TATGCCCCAGTTTATTG
* *
26986118 AAAAGGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTATGCCCCAGTTTATTG
*
26986142 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTATGCCCCAGTTTATTG
*
26986165 AAAAGAGGCTAGGCCTCCAG-TTATATG
1 AAAAG-GGCTATGCC-CCAGTTTAT-TG
26986192 ATAAAGCGGCTAT
1 A-AAAG-GGCTAT
26986205 ACTGCCAGTG
Statistics
Matches: 98, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
23 8 0.08
24 27 0.28
25 28 0.29
26 25 0.26
27 1 0.01
28 9 0.09
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATTG
Found at i:26986108 original size:26 final size:25
Alignment explanation
Indices: 26986067--26986174 Score: 150
Period size: 24 Copynumber: 4.4 Consensus size: 25
26986057 GTTGAAGTGC
*
26986067 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTATTG
*
26986092 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
*
26986118 AAAAGGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTATTG
26986142 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
26986165 AAAAGAGGCT
1 AAAAG-GGCT
26986175 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
23 8 0.11
24 24 0.32
25 20 0.26
26 24 0.32
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:26986420 original size:31 final size:31
Alignment explanation
Indices: 26986385--26986475 Score: 94
Period size: 38 Copynumber: 2.7 Consensus size: 31
26986375 CCGTTAAACG
26986385 AAAGGCTTCGGCCCAGTAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
* *
26986416 AAAGGATTCGGCCCAGTGTTATGAATTATGAAATATGA
1 AAAGGCTTCGGCCCA--G---T-AA-TATGAAACATGA
26986454 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
26986476 TTGAGATTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
30 4 0.08
31 15 0.30
33 2 0.04
36 2 0.04
37 2 0.04
38 25 0.50
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:26993283 original size:26 final size:28
Alignment explanation
Indices: 26993249--26993304 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 28
26993239 AATAACCAAT
26993249 TTCTGGTT-ACAACAAAAATCGAATAAA
1 TTCTGGTTAACAACAAAAATCGAATAAA
26993276 TTCT-GTTAACAACAAAAATCGAATAAA
1 TTCTGGTTAACAACAAAAATCGAATAAA
26993303 TT
1 TT
26993305 TTATTTAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (28 bp):
TTCTGGTTAACAACAAAAATCGAATAAA
Done.