Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 85 of 311
Found at i:26993425 original size:78 final size:79
Alignment explanation
Indices: 26993325--26993604 Score: 309
Period size: 78 Copynumber: 3.6 Consensus size: 79
26993315 ACAAGAAAAG
* * * * * * **
26993325 AATCCTGAAACTGAATTATTCAATTGATTTCTATTTTTTAAA-AAAGATTGAACAAATCCTATTA
1 AATCCTGAAACAGAATTGTTCAATTGATTTCTCTATTTAAAACAAAAATCAAACAAATCCTATTA
*
26993389 AACGGCAGGAATAA
66 AATGGCAGGAATAA
* * *
26993403 AATCCTGAAACAAAATTGTTCAATTGATTT-TCTGTTTAAAACAAAAATCAAACAAATCCTGTTA
1 AATCCTGAAACAGAATTGTTCAATTGATTTCTCTATTTAAAACAAAAATCAAACAAATCCTATTA
26993467 AATGGCAGGAATAA
66 AATGGCAGGAATAA
* * * *
26993481 AATCCTAAAACATG-ATTGTTCAATT-ATTTTTCTATTTGAAACAAAAATCAAACAAATCGTATT
1 AATCCTGAAACA-GAATTGTTCAATTGATTTCTCTATTTAAAACAAAAATCAAACAAATCCTATT
*
26993544 AAATGACAGGAATAA
65 AAATGGCAGGAATAA
* * * * * *
26993559 AATCTTGAAACAGGATTGTTTAATTGAATT-TCTGTTTGAAACAAAA
1 AATCCTGAAACAGAATTGTTCAATTGATTTCTCTATTTAAAACAAAA
26993605 TAAAATTTAT
Statistics
Matches: 174, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
77 13 0.07
78 158 0.91
79 3 0.02
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (79 bp):
AATCCTGAAACAGAATTGTTCAATTGATTTCTCTATTTAAAACAAAAATCAAACAAATCCTATTA
AATGGCAGGAATAA
Found at i:26995976 original size:49 final size:49
Alignment explanation
Indices: 26995904--26996078 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
26995894 TGAGGTCACG
*
26995904 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
26995953 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGAAAACTGTGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* *
26996004 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
*
26996053 TGTGTAGTACTAAGTTCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26996079 TGCATACCAG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 66 0.61
50 2 0.02
51 40 0.37
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:26996077 original size:100 final size:100
Alignment explanation
Indices: 26995899--26996089 Score: 328
Period size: 100 Copynumber: 1.9 Consensus size: 100
26995889 TATTTTGAGG
* **
26995899 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACT
*
26995964 AAGTACAGGCTACTATGCGTACCAGAAAACTGTGA
66 AAGTACAGGCTACTATGCATACCAGAAAACTGTGA
*
26995999 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACT
*
26996064 AAGTTCAGGCTACTATGCATACCAGA
66 AAGTACAGGCTACTATGCATACCAGA
26996090 TAGCTTCGGC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACT
AAGTACAGGCTACTATGCATACCAGAAAACTGTGA
Found at i:27011001 original size:28 final size:30
Alignment explanation
Indices: 27010969--27011024 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
27010959 TACTTATAAA
* *
27010969 TAACAACTAACA-CATAAA-ATTCATCATT
1 TAACAACTAAAATCACAAATATTCATCATT
*
27010997 TAACATCTAAAATCACAAATATTCATCA
1 TAACAACTAAAATCACAAATATTCATCA
27011025 ATGGAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 10 0.43
29 5 0.22
30 8 0.35
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (30 bp):
TAACAACTAAAATCACAAATATTCATCATT
Found at i:27015594 original size:27 final size:28
Alignment explanation
Indices: 27015555--27015611 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
27015545 ATGATCAAAT
27015555 TTTAATATAAAA-TTAATTATTTTAATAA
1 TTTAATATAAAATTTAATTATTTT-ATAA
27015583 TTTAAT-TAAAATTTAATTATTTTATAA
1 TTTAATATAAAATTTAATTATTTTATAA
27015610 TT
1 TT
27015612 ATTATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
TTTAATATAAAATTTAATTATTTTATAA
Found at i:27017481 original size:46 final size:46
Alignment explanation
Indices: 27017414--27017586 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
27017404 AACACGCCCC
* * *
27017414 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
27017460 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATTCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * * * *
27017508 TCA-CGAACTCGAACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
27017553 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27017587 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 58 0.58
47 26 0.26
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:27017528 original size:93 final size:93
Alignment explanation
Indices: 27017419--27017587 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
27017409 GCCCCTAAGT
* ** * *
27017419 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27017484 CAAGTTCGGATTCCTAGTTACATTTCAC
66 CAAGTTCGGATTCCTAGTTACATTTCAC
*
27017512 GAACTCGAACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27017577 CGAGTTCGGAT
66 CAAGTTCGGAT
27017588 GCTCAACCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATTCCTAGTTACATTTCAC
Found at i:27017605 original size:46 final size:45
Alignment explanation
Indices: 27017512--27017597 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
27017502 TACATTTCAC
* *
27017512 GAACTCGAACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGAACTCAACTCAACGAGTTCG-ACATGCGCAACCATAAGT
* * *
27017558 GAACTCGGACTCAACTCAACGAGTTCG-GATGCTCAACCAT
1 GAACTCGAACTCAACTCAACGAGTTCGACATGCGCAACCAT
27017598 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (45 bp):
GAACTCGAACTCAACTCAACGAGTTCGACATGCGCAACCATAAGT
Found at i:27022977 original size:46 final size:46
Alignment explanation
Indices: 27022910--27023080 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
27022900 AACCCGCCCC
*
27022910 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
27022956 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
27023004 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
27023048 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
27023081 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 1 0.01
44 2 0.02
45 26 0.25
46 34 0.33
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:27023073 original size:92 final size:93
Alignment explanation
Indices: 27022915--27023084 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
27022905 GCCCCTAAGT
* *
27022915 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27022980 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
27023008 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27023072 CGAGTTCGGATGC
66 CGAGTTCGGATGC
27023085 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.66
93 25 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:27024560 original size:5 final size:5
Alignment explanation
Indices: 27024541--27024586 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
27024531 TCATCTTCTC
* *
27024541 TCTTT TCTTC T-TTT TCTTT TCTTT TCTTT T-TTT TCCTTT TTTTT TC
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T-CTTT TCTTT TC
27024587 ACGAGCATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
4 7 0.21
5 23 0.68
6 4 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TCTTT
Found at i:27024563 original size:26 final size:25
Alignment explanation
Indices: 27024534--27024586 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
27024524 GTATGTATCA
27024534 TCTTCTCTCTTTTCTT-CTTTTTCTTT
1 TCTTCTCT-TTTTCTTCCTTTTT-TTT
* *
27024560 TCTTTTCTTTTTTTTCCTTTTTTTT
1 TCTTCTCTTTTTCTTCCTTTTTTTT
27024585 TC
1 TC
27024587 ACGAGCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (25 bp):
TCTTCTCTTTTTCTTCCTTTTTTTT
Found at i:27024565 original size:19 final size:20
Alignment explanation
Indices: 27024541--27024586 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
27024531 TCATCTTCTC
27024541 TCTTTTCTTCTTTTT-CTTT
1 TCTTTTCTTCTTTTTCCTTT
*
27024560 TCTTTTCTTTTTTTTCCTTT
1 TCTTTTCTTCTTTTTCCTTT
*
27024580 TTTTTTC
1 TCTTTTC
27024587 ACGAGCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (20 bp):
TCTTTTCTTCTTTTTCCTTT
Found at i:27024574 original size:14 final size:14
Alignment explanation
Indices: 27024541--27024584 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
27024531 TCATCTTCTC
*
27024541 TCTTTTCTTCTTTT
1 TCTTTTCTTTTTTT
27024555 TCTTTTCTTTTCTTT
1 TCTTTTCTTTT-TTT
27024570 T-TTTTCCTTTTTTT
1 TCTTTT-CTTTTTTT
27024584 T
1 T
27024585 TCACGAGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 18 0.67
15 9 0.33
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:27025548 original size:257 final size:257
Alignment explanation
Indices: 27025085--27025600 Score: 1014
Period size: 257 Copynumber: 2.0 Consensus size: 257
27025075 TAACAAAATT
27025085 TCAAATTTTTGAACAAAATATATCCTAATCATAACTAAAAGAAAATTTTATTCTAAGAGGAAATA
1 TCAAATTTTTGAACAAAATATATCCTAATCATAACTAAAAGAAAATTTTATTCTAAGAGGAAATA
27025150 ATTTTTGAACAATGTCCTCACTGTTAGAAGTGAATAGATACTATACACAAGGTAGGATTCTAGAA
66 ATTTTTGAACAATGTCCTCACTGTTAGAAGTGAATAGATACTATACACAAGGTAGGATTCTAGAA
27025215 AAAAGGAGGTGAGTTAATTTGACTACTTATGTATCAAGCTCTTTCTAGATCCAATCCTAGACATG
131 AAAAGGAGGTGAGTTAATTTGACTACTTATGTATCAAGCTCTTTCTAGATCCAATCCTAGACATG
*
27025280 TATACATCTATTGCCACACTTTGTACTTTACAACTTGTTCATTTTTATTTATGATTTCCACC
196 TATACATCTATTGCCACACTTTGTAATTTACAACTTGTTCATTTTTATTTATGATTTCCACC
27025342 TCAAATTTTTGAACAAAATATATCCTAATCATAACTAAAAGAAAATTTTATTCTAAGAGGAAATA
1 TCAAATTTTTGAACAAAATATATCCTAATCATAACTAAAAGAAAATTTTATTCTAAGAGGAAATA
27025407 ATTTTTGAACAATGTCCTCACTGTTAGAAGTGAATAGATACTATACACAAGGTAGGATTCTAGAA
66 ATTTTTGAACAATGTCCTCACTGTTAGAAGTGAATAGATACTATACACAAGGTAGGATTCTAGAA
27025472 AAAAGGAGGTGAGTTAATTTGACTACTTATGTATCAAGCTCTTTCTAGATCCAATCCTAGACATG
131 AAAAGGAGGTGAGTTAATTTGACTACTTATGTATCAAGCTCTTTCTAGATCCAATCCTAGACATG
*
27025537 TATATATCTATTGCCACACTTTGTAATTTACAACTTGTTCATTTTTATTTATGATTTCCACC
196 TATACATCTATTGCCACACTTTGTAATTTACAACTTGTTCATTTTTATTTATGATTTCCACC
27025599 TC
1 TC
27025601 TTATTTTATT
Statistics
Matches: 257, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
257 257 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (257 bp):
TCAAATTTTTGAACAAAATATATCCTAATCATAACTAAAAGAAAATTTTATTCTAAGAGGAAATA
ATTTTTGAACAATGTCCTCACTGTTAGAAGTGAATAGATACTATACACAAGGTAGGATTCTAGAA
AAAAGGAGGTGAGTTAATTTGACTACTTATGTATCAAGCTCTTTCTAGATCCAATCCTAGACATG
TATACATCTATTGCCACACTTTGTAATTTACAACTTGTTCATTTTTATTTATGATTTCCACC
Found at i:27030996 original size:38 final size:37
Alignment explanation
Indices: 27030950--27031291 Score: 488
Period size: 37 Copynumber: 9.1 Consensus size: 37
27030940 TTAAGCTCGA
* *
27030950 ATATAATACCAACACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGA-TAAACCCGG
* *
27030988 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGA-TAAACCCGG
* * *
27031026 ATATAATGCCAGCACGAAGCCTGCGGGATAAAACCCAG
1 ATATAATACCAGCACTAAGCCTGCGGGAT-AAACCCGG
* *
27031064 ATATAATACCAGCA-TGAAGCTTGTGGGATAAACCCGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATAAACCCGG
* * *
27031101 ATATAATACCAGCACGAAGCCTACGGGATAAACCTGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
27031138 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
*
27031175 ATATAATACCAGCACTAAGCCTGCGGGATAAAACTCGG
1 ATATAATACCAGCACTAAGCCTGCGGGAT-AAACCCGG
* * *
27031213 ATATAATATCAGCACGAAGCCTGTGGGATAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
27031250 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
27031287 ATATA
1 ATATA
27031292 CATCAAATAT
Statistics
Matches: 274, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
37 148 0.54
38 126 0.46
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (37 bp):
ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
Found at i:27031214 original size:112 final size:111
Alignment explanation
Indices: 27030950--27031291 Score: 515
Period size: 112 Copynumber: 3.0 Consensus size: 111
27030940 TTAAGCTCGA
* *
27030950 ATATAATACCAACACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACTAAGCCTGCGGGA-TAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
* * * *
27031015 ATTTAACCCGGATATAATGCCAGCACGAAGCCTGCGGGATAAAACCCAG
65 A-TAAACCCGGATATAATACCAGCACTAAGCCTGCGGGAT-AAACCCGG
* * *
27031064 ATATAATACCAGCA-TGAAGCTTGTGGGATAAACCCGGATATAATACCAGCACGAAGCCTACGGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
*
27031128 ATAAACCTGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
65 ATAAACCCGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
* * *
27031175 ATATAATACCAGCACTAAGCCTGCGGGATAAAACTCGGATATAATATCAGCACGAAGCCTGTGGG
1 ATATAATACCAGCACTAAGCCTGCGGGAT-AAACCCGGATATAATACCAGCACGAAGCCTGCGGG
27031240 ATAAACCCGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
65 ATAAACCCGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
27031287 ATATA
1 ATATA
27031292 CATCAAATAT
Statistics
Matches: 208, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
111 32 0.15
112 117 0.56
113 36 0.17
114 23 0.11
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (111 bp):
ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
TAAACCCGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
Found at i:27034547 original size:27 final size:27
Alignment explanation
Indices: 27034517--27034571 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
27034507 TATTATAAAA
27034517 TTAATTAAAACTAAA-TATTTTAATAAT
1 TTAATTAAAACTAAATTATTTT-ATAAT
* *
27034544 TTAATTACAATTAAATTATTTTATAAT
1 TTAATTAAAACTAAATTATTTTATAAT
27034571 T
1 T
27034572 ATTATATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (27 bp):
TTAATTAAAACTAAATTATTTTATAAT
Found at i:27050748 original size:40 final size:40
Alignment explanation
Indices: 27050678--27050894 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
27050668 AAACCAAGTA
* *
27050678 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
27050717 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
27050757 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
27050797 CCTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
27050837 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
27050877 CCTTCAGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
27050895 ATTACCATCC
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:27058822 original size:40 final size:40
Alignment explanation
Indices: 27058752--27059006 Score: 376
Period size: 40 Copynumber: 6.5 Consensus size: 40
27058742 AAACCAAGTA
* *
27058752 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
27058791 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27058830 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27058870 CCTTCGAGACTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27058909 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
27058949 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
**
27058989 CCTTTAGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
27059007 ATTACCATCC
Statistics
Matches: 200, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 90 0.45
40 110 0.55
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:27058882 original size:79 final size:79
Alignment explanation
Indices: 27058752--27059004 Score: 370
Period size: 79 Copynumber: 3.2 Consensus size: 79
27058742 AAACCAAGTA
* *
27058752 CCTTCGGGATTTAGCCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
27058816 TAACTCGCAC-AATG
65 TAACTCGCACAAATG
*
27058830 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAG-CCGGATATAG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
27058894 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
27058909 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* *
27058973 GTCACTAGCACAAATG
64 GTAACTCGCACAAATG
**
27058989 CCTTTAGGACTTAGCC
1 CCTTCGGGACTTAGCC
27059005 CGATTACCAT
Statistics
Matches: 160, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
78 36 0.22
79 89 0.56
80 35 0.22
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:27066906 original size:40 final size:40
Alignment explanation
Indices: 27066835--27066971 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 40
27066825 AAACCAAGTA
* *
27066835 CCTTCGGGATTTAG-CCGGATAAAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATAAAGCTACTCGCACAAATG
* *
27066874 CCTTCAGGACTTAGCCCGGATATAG-TAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAAAGCTA-CTCGCACAAATG
* * ** *
27066914 CCTTCGGGACTTAGCCCGAAATTATTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCG-GATAAAGCTACTCGCACAAATG
*
27066954 CCTTCGAGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
27066972 ATTACCATCC
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 14 0.17
40 65 0.79
41 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATAAAGCTACTCGCACAAATG
Found at i:27070435 original size:33 final size:35
Alignment explanation
Indices: 27070397--27070477 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 35
27070387 GCCTAAGCCC
* *
27070397 ATTCAGATAACAGTGATACTGGGTCAGAG-CCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
* * **
27070431 -TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
27070464 ATTCAGATAACAGT
1 ATTCAGATAACAGT
27070478 ATGGCCCATA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
32 11 0.30
33 15 0.41
34 10 0.27
35 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (35 bp):
ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
Found at i:27075923 original size:22 final size:21
Alignment explanation
Indices: 27075880--27075924 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
27075870 AATTAGCCGA
*
27075880 AATTAAAAACTGTAAAATAAT
1 AATTAAAAACTGTAAAAAAAT
27075901 AATTATAAAACT-TAATAAAAAT
1 AATTA-AAAACTGTAA-AAAAAT
27075923 AA
1 AA
27075925 GGTGAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (21 bp):
AATTAAAAACTGTAAAAAAAT
Found at i:27086861 original size:55 final size:56
Alignment explanation
Indices: 27086801--27086921 Score: 133
Period size: 55 Copynumber: 2.2 Consensus size: 56
27086791 TGACTATTTC
* *
27086801 GAGAGTTACACTGCTTG-GAACACGGGT-GTGTTG-CTTGGCCATGTGACCCAACTCA
1 GAGAGTTACACTGCGTGAGAACA-GGGTCGTG-TGCCTTGGCCATGTGACCCAACACA
* * * * *
27086856 GAGAGTTACA-TGGGTGAGGACATGGTCGTGTGCCTTGGTCGTGTGACCCAACACA
1 GAGAGTTACACTGCGTGAGAACAGGGTCGTGTGCCTTGGCCATGTGACCCAACACA
27086911 GAGAGTTACAC
1 GAGAGTTACAC
27086922 GGGTGAGGAC
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
54 9 0.16
55 46 0.84
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (56 bp):
GAGAGTTACACTGCGTGAGAACAGGGTCGTGTGCCTTGGCCATGTGACCCAACACA
Found at i:27090029 original size:25 final size:25
Alignment explanation
Indices: 27089990--27090061 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
27089980 CAGGCCTATT
* * *
27089990 TTCACAACTCGTGTGAGCATATCGG
1 TTCACAGCTCGTGTGAGCATACCGA
* *
27090015 TTTACAGCTCGTGTGATCATACCGA
1 TTCACAGCTCGTGTGAGCATACCGA
*
27090040 TTCACAGCTTGTGTGAGCATAC
1 TTCACAGCTCGTGTGAGCATAC
27090062 ATGTACATGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATACCGA
Found at i:27092940 original size:40 final size:40
Alignment explanation
Indices: 27092879--27093164 Score: 398
Period size: 40 Copynumber: 7.2 Consensus size: 40
27092869 CGGAATTTAG
* * * *
27092879 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
27092919 CCGGGT-ATAGCAACTCGCACAAATGCCTTC-GGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
27092958 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
27092998 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
27093038 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
27093078 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
27093118 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
27093158 CCGGATA
1 CCGGATA
27093165 TCATTCAAAT
Statistics
Matches: 226, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
39 38 0.17
40 184 0.81
41 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:27101411 original size:40 final size:40
Alignment explanation
Indices: 27101350--27101632 Score: 371
Period size: 40 Copynumber: 7.2 Consensus size: 40
27101340 CGGAATTTAG
* * * *
27101350 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
27101390 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
27101430 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
27101470 CCGGAT--AATCACT-GCACAAATGCCTTCGGGTCTT-AC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
27101506 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
27101546 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
27101586 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
27101626 CCGGATA
1 CCGGATA
27101633 TCATTCAAAT
Statistics
Matches: 222, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
36 7 0.03
37 21 0.09
38 10 0.05
39 26 0.12
40 158 0.71
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:27101624 original size:156 final size:156
Alignment explanation
Indices: 27101350--27101632 Score: 417
Period size: 156 Copynumber: 1.8 Consensus size: 156
27101340 CGGAATTTAG
* * * * *
27101350 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAGCAACTAGCACAAATG
* * * *
27101415 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAATC
66 CCTTCGGGTCTTAACCCGGATAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAATC
27101480 ACTGCACAAATGCCTTCGGGTCTTAC
131 ACTGCACAAATGCCTTCGGGTCTTAC
* * * *
27101506 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACTAGCATAAAT
1 CCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGAT-AAAGCAACTAGCACAAAT
27101570 GCCTTCGGGTCTTAACCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
65 GCCTTCGGGTCTTAACCCGGAT-AAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
27101633 TCATTCAAAT
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
156 105 0.94
157 7 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (156 bp):
CCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAGCAACTAGCACAAATG
CCTTCGGGTCTTAACCCGGATAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAATC
ACTGCACAAATGCCTTCGGGTCTTAC
Found at i:27105452 original size:40 final size:40
Alignment explanation
Indices: 27105344--27105461 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
27105334 GGAAAAAAAA
* *
27105344 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
*
27105384 TATTACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
*
27105424 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT
27105462 GTTAAGTCCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
Found at i:27105477 original size:28 final size:29
Alignment explanation
Indices: 27105433--27105493 Score: 115
Period size: 28 Copynumber: 2.1 Consensus size: 29
27105423 TTATAACCGG
27105433 GTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 GTTAAGTCCCGAAGGCATTTGTGCTGGTT
27105462 GTTAAGT-CCGAAGGCATTTGTGCTGGTT
1 GTTAAGTCCCGAAGGCATTTGTGCTGGTT
27105490 GTTA
1 GTTA
27105494 CATCCGAGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (29 bp):
GTTAAGTCCCGAAGGCATTTGTGCTGGTT
Found at i:27109116 original size:10 final size:10
Alignment explanation
Indices: 27109103--27109137 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
27109093 CTGTTTTATA
27109103 CATGATATGC
1 CATGATATGC
27109113 CATGATATGC
1 CATGATATGC
27109123 ACATGATATGC
1 -CATGATATGC
27109134 CATG
1 CATG
27109138 GTATATTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (10 bp):
CATGATATGC
Found at i:27109263 original size:24 final size:25
Alignment explanation
Indices: 27109187--27109256 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
27109177 GAAGAAGTGC
* *
27109187 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
27109212 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
27109237 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
27109257 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:27117051 original size:10 final size:10
Alignment explanation
Indices: 27117038--27117076 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
27117028 CTGTTTTATA
27117038 CATGATATGC
1 CATGATATGC
27117048 CATGATATGC
1 CATGATATGC
27117058 ACATGATATGC
1 -CATGATATGC
27117069 CATGATAT
1 CATGATAT
27117077 ATTCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:27117062 original size:21 final size:21
Alignment explanation
Indices: 27117037--27117076 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
27117027 ACTGTTTTAT
27117037 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
27117058 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
27117077 ATTCATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:27117156 original size:25 final size:25
Alignment explanation
Indices: 27117122--27117191 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
27117112 GAGGAAGTGC
*
27117122 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
27117147 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
27117172 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
27117192 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:27117204 original size:24 final size:24
Alignment explanation
Indices: 27117121--27117204 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 24
27117111 GGAGGAAGTG
*
27117121 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
27117145 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
27117170 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
27117194 TAAAAGAGGCT
1 CAAAAG-GGCT
27117205 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
23 5 0.09
24 9 0.16
25 41 0.75
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:27117215 original size:50 final size:50
Alignment explanation
Indices: 27117122--27117216 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
27117112 GAGGAAGTGC
**
27117122 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
27117172 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
27117217 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:27118882 original size:24 final size:24
Alignment explanation
Indices: 27118850--27118898 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
27118840 TTCCTCTCAT
27118850 AAAGTTATGATTCAATCCATTTGC
1 AAAGTTATGATTCAATCCATTTGC
27118874 AAAGTTATGATTCAATCCATTTGC
1 AAAGTTATGATTCAATCCATTTGC
27118898 A
1 A
27118899 TACTCATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (24 bp):
AAAGTTATGATTCAATCCATTTGC
Found at i:27124073 original size:14 final size:14
Alignment explanation
Indices: 27124054--27124098 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
27124044 TAAATACCTG
27124054 AAAAATAAATCACA
1 AAAAATAAATCACA
* *
27124068 AAAAATAAATAATA
1 AAAAATAAATCACA
*
27124082 AATAATAAATCAGCA
1 AAAAATAAATCA-CA
27124097 AA
1 AA
27124099 TTTAAGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 22 0.88
15 3 0.12
ACGTcount: A:0.71, C:0.09, G:0.02, T:0.18
Consensus pattern (14 bp):
AAAAATAAATCACA
Found at i:27124894 original size:20 final size:20
Alignment explanation
Indices: 27124869--27124920 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
27124859 CAGGGGTCAG
27124869 ACACCCGTGTGGTTTGGGAC
1 ACACCCGTGTGGTTTGGGAC
27124889 ACACCCGTGTGGTTTGGGAC
1 ACACCCGTGTGGTTTGGGAC
27124909 ACACCCGTGTGG
1 ACACCCGTGTGG
27124921 GCAAGTCGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.27, G:0.35, T:0.23
Consensus pattern (20 bp):
ACACCCGTGTGGTTTGGGAC
Found at i:27127343 original size:51 final size:50
Alignment explanation
Indices: 27127210--27127398 Score: 148
Period size: 51 Copynumber: 3.7 Consensus size: 50
27127200 CTATTTAGTG
* ** * * ** *
27127210 CACAGAGTAGCCTGCACTTCA-TACTACATTTGTGACCAGAACCGTCTCTTC
1 CACATAGTAGCCTGCACTT-AGTACTACACATGCGACC-GAACCATCTGGTA
* * * * * *
27127261 CACATAGTGGCCTACACTTAGTACCACACATGTGATCGAAGCTATC-GCGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAA-CCATCTG-GTA
* * *
27127312 CGCATAGTAGCCTGCACTTAGTACTATACATGCGACCTAACCATCTGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACCATCTGGTA
* * *
27127362 CACGTAGTAACCTGCACTTAGTACTACACACGCGACC
1 CACATAGTAGCCTGCACTTAGTACTACACATGCGACC
27127399 AAAAAACCGT
Statistics
Matches: 108, Mismatches: 26, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
50 43 0.40
51 65 0.60
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACCATCTGGTA
Found at i:27130694 original size:42 final size:42
Alignment explanation
Indices: 27130637--27130802 Score: 156
Period size: 42 Copynumber: 3.9 Consensus size: 42
27130627 TAGGGTTATG
* * *
27130637 TGTGATTTCGTGTAAGACCATATTTGGGATATGCCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
*
27130679 TGTGATTTCATGTAAGACCATGTCTGGGATATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * ** * * *
27130721 CGGGACATCGTATAAGACCATAGT-TGGGCTATCGGCATCGATATA
1 TGTGATTTCATGTAAGACCATA-TCTGGGATAT-GGCATCG--ATA
* *
27130766 TGTGA-TCCTATGTAAGACCATATCTAGGATATGGCAT
1 TGTGATTTC-ATGTAAGACCATATCTGGGATATGGCAT
27130803 TAGCATCTTA
Statistics
Matches: 98, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
42 60 0.61
43 8 0.08
44 7 0.07
45 23 0.23
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:27130780 original size:87 final size:84
Alignment explanation
Indices: 27130644--27130802 Score: 212
Period size: 87 Copynumber: 1.9 Consensus size: 84
27130634 ATGTGTGATT
* * * * *
27130644 TCGTGTAAGACCATATTTGGGATATGCCATCGATATGTGATTTCATGTAAGACCATGTCTGGGAT
1 TCGTATAAGACCATAGTTGGGATATGCCATCGATATGTGATCTCATGTAAGACCATATCTAGGAT
27130709 ATGGCATCGATACGGGACA
66 ATGGCATCGATACGGGACA
* *
27130728 TCGTATAAGACCATAGTTGGGCTATCGGCATCGATATATGTGATC-CTATGTAAGACCATATCTA
1 TCGTATAAGACCATAGTTGGGATAT-GCCATCG--ATATGTGATCTC-ATGTAAGACCATATCTA
27130792 GGATATGGCAT
62 GGATATGGCAT
27130803 TAGCATCTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
84 22 0.34
85 6 0.09
86 1 0.02
87 35 0.55
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (84 bp):
TCGTATAAGACCATAGTTGGGATATGCCATCGATATGTGATCTCATGTAAGACCATATCTAGGAT
ATGGCATCGATACGGGACA
Found at i:27136179 original size:43 final size:41
Alignment explanation
Indices: 27136124--27136245 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 41
27136114 TACCGAGATT
*
27136124 TGATTACATGTAAGACCATGTCTGAGACATTGGCAT-TGTAT-
1 TGATTACGTGTAAGACCATGTCTG-GACATTGGCATAT-TATA
*
27136165 TGTAATTACGTGTAAGACCATGTCTCGGATATTGGCATCATTATA
1 TG--ATTACGTGTAAGACCATGTCT-GGACATTGGCAT-ATTATA
* * *
27136210 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 TGATTACGTGTAAGACCATGTCT-GGACATTGGCAT
27136246 CGATATGTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 2 0.03
43 59 0.87
44 4 0.06
45 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (41 bp):
TGATTACGTGTAAGACCATGTCTGGACATTGGCATATTATA
Found at i:27140848 original size:15 final size:15
Alignment explanation
Indices: 27140828--27140861 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
27140818 CTCGGATGAA
*
27140828 CAAAAATGGTACATC
1 CAAAAATGGAACATC
27140843 CAAAAATGGAACATC
1 CAAAAATGGAACATC
27140858 CAAA
1 CAAA
27140862 CATCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.21, G:0.12, T:0.15
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:27140944 original size:16 final size:16
Alignment explanation
Indices: 27140923--27140955 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
27140913 TATAATTTAA
27140923 TCAATTAATTCAATAG
1 TCAATTAATTCAATAG
*
27140939 TCAATTAATTTAATAG
1 TCAATTAATTCAATAG
27140955 T
1 T
27140956 TAAAATGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (16 bp):
TCAATTAATTCAATAG
Found at i:27142015 original size:16 final size:16
Alignment explanation
Indices: 27141990--27142024 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
27141980 CAAAAGATAG
*
27141990 ATATAAGCATTCATAC
1 ATATAAGCATTCACAC
*
27142006 ATATAGGCATTCACAC
1 ATATAAGCATTCACAC
27142022 ATA
1 ATA
27142025 AAATGAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (16 bp):
ATATAAGCATTCACAC
Found at i:27144509 original size:43 final size:43
Alignment explanation
Indices: 27144454--27144537 Score: 107
Period size: 44 Copynumber: 2.0 Consensus size: 43
27144444 CAAAGAATTG
* **
27144454 GGGAAATGTGTTTTGGGGTTTT-GTTAAAATGGCTAAGTGTTT
1 GGGAAATGTGTTTTGGGCTTTTGGGGAAAATGGCTAAGTGTTT
* *
27144496 GGGAAATTTTGTTTTGGGCTTTTGGGGGAAATGGCTAAGTGT
1 GGGAAA-TGTGTTTTGGGCTTTTGGGGAAAATGGCTAAGTGT
27144538 CAGACATGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 6 0.17
43 14 0.40
44 15 0.43
ACGTcount: A:0.20, C:0.04, G:0.36, T:0.40
Consensus pattern (43 bp):
GGGAAATGTGTTTTGGGCTTTTGGGGAAAATGGCTAAGTGTTT
Found at i:27144901 original size:14 final size:14
Alignment explanation
Indices: 27144854--27144904 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
27144844 TACTAATTAA
27144854 TCTAAACCCTAAACC
1 TCTAAACCCTAAA-C
* * **
27144869 TTTAACCCCTACCC
1 TCTAAACCCTAAAC
27144883 T-TAAACCCTAAAC
1 TCTAAACCCTAAAC
27144896 TCTAAACCC
1 TCTAAACCC
27144905 ATAGCCCATG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 10 0.36
14 9 0.32
15 9 0.32
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (14 bp):
TCTAAACCCTAAAC
Found at i:27144942 original size:15 final size:15
Alignment explanation
Indices: 27144922--27144990 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
27144912 ATGTCCCTTT
27144922 AACCCTTAAACCCTA
1 AACCCTTAAACCCTA
*
27144937 AACCCTTAACCCCT-
1 AACCCTTAAACCCTA
*
27144951 AACCCCT-AACCACTA
1 AACCCTTAAACC-CTA
*
27144966 AA-CTTTAAACCC-A
1 AACCCTTAAACCCTA
*
27144979 TAATCCTTAAAC
1 -AACCCTTAAAC
27144991 TCATAATCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 4 0.09
14 13 0.30
15 26 0.60
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (15 bp):
AACCCTTAAACCCTA
Found at i:27144954 original size:14 final size:14
Alignment explanation
Indices: 27144921--27144966 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
27144911 CATGTCCCTT
*
27144921 TAACCCTTAAACCC
1 TAACCCTTAACCCC
27144935 TAAACCCTTAACCCC
1 T-AACCCTTAACCCC
* *
27144950 TAACCCCTAACCAC
1 TAACCCTTAACCCC
27144964 TAA
1 TAA
27144967 ACTTTAAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.20
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:27144995 original size:15 final size:15
Alignment explanation
Indices: 27144970--27145006 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
27144960 CCACTAAACT
27144970 TTAAACCCATAATCC
1 TTAAACCCATAATCC
*
27144985 TTAAACTCATAATCC
1 TTAAACCCATAATCC
*
27145000 ATAAACC
1 TTAAACC
27145007 TTAAAATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (15 bp):
TTAAACCCATAATCC
Found at i:27145052 original size:7 final size:7
Alignment explanation
Indices: 27145035--27145141 Score: 97
Period size: 7 Copynumber: 14.9 Consensus size: 7
27145025 AACTATAAAA
27145035 CCCTAACC
1 CCCTAA-C
*
27145043 CCCTATC
1 CCCTAAC
27145050 CCCTTAAC
1 CCC-TAAC
27145058 CCCTAAC
1 CCCTAAC
*
27145065 CCTTTAAC
1 CC-CTAAC
27145073 CCCTAAC
1 CCCTAAC
27145080 CCCTAAC
1 CCCTAAC
27145087 CCCTAAC
1 CCCTAAC
*
27145094 CACTAAC
1 CCCTAAC
*
27145101 CACTAAC
1 CCCTAAC
*
27145108 CCCTAAA
1 CCCTAAC
* *
27145115 CCTTAAA
1 CCCTAAC
*
27145122 CTCTAAC
1 CCCTAAC
* *
27145129 CCTTAAA
1 CCCTAAC
27145136 CCCTAA
1 CCCTAA
27145142 ACTCATAACA
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
7 65 0.79
8 17 0.21
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.21
Consensus pattern (7 bp):
CCCTAAC
Found at i:27145060 original size:15 final size:15
Alignment explanation
Indices: 27145042--27145116 Score: 91
Period size: 15 Copynumber: 5.1 Consensus size: 15
27145032 AAACCCTAAC
*
27145042 CCCCTATCCCCTTAA
1 CCCCTAACCCCTTAA
*
27145057 CCCCTAACCCTTTAA
1 CCCCTAACCCCTTAA
27145072 CCCCTAACCCC-TAA
1 CCCCTAACCCCTTAA
*
27145086 CCCCTAACCAC-TAA
1 CCCCTAACCCCTTAA
* *
27145100 CCACTAACCCCTAAA
1 CCCCTAACCCCTTAA
27145115 CC
1 CC
27145117 TTAAACTCTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
14 25 0.48
15 27 0.52
ACGTcount: A:0.29, C:0.52, G:0.00, T:0.19
Consensus pattern (15 bp):
CCCCTAACCCCTTAA
Found at i:27145142 original size:21 final size:21
Alignment explanation
Indices: 27145073--27145163 Score: 78
Period size: 21 Copynumber: 4.3 Consensus size: 21
27145063 ACCCTTTAAC
* *
27145073 CCCTAACCCCTAACCCCT-AA
1 CCCTAAACTCTAACCCCTAAA
* *
27145093 CCACTAACCACTAACCCCTAAA
1 CC-CTAAACTCTAACCCCTAAA
* *
27145115 CCTTAAACTCTAACCCTTAAA
1 CCCTAAACTCTAACCCCTAAA
*
27145136 CCCTAAACTCATAA-CACTAAA
1 CCCTAAACTC-TAACCCCTAAA
*
27145157 CCTTAAA
1 CCCTAAA
27145164 ATATTAACTC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
20 2 0.03
21 50 0.85
22 7 0.12
ACGTcount: A:0.40, C:0.41, G:0.00, T:0.20
Consensus pattern (21 bp):
CCCTAAACTCTAACCCCTAAA
Found at i:27145155 original size:28 final size:28
Alignment explanation
Indices: 27145069--27145163 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 28
27145059 CCTAACCCTT
* * * * *
27145069 TAACCCCTAACCCCTAACCCCTAACCAC
1 TAACCCTTAAACCCTAAACCATAAACAC
* * *
27145097 TAACCAC-TAACCCCTAAACCTTAAACTC
1 TAACC-CTTAAACCCTAAACCATAAACAC
27145125 TAACCCTTAAACCCTAAACTCAT-AACAC
1 TAACCCTTAAACCCTAAAC-CATAAACAC
*
27145153 TAAACCTTAAA
1 TAACCCTTAAA
27145164 ATATTAACTC
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.02
28 52 0.93
29 3 0.05
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (28 bp):
TAACCCTTAAACCCTAAACCATAAACAC
Found at i:27145361 original size:29 final size:30
Alignment explanation
Indices: 27145328--27145395 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
27145318 CTTTAAAATT
27145328 ATTTTAAATAATAGTATTTTTAT-T-TTTTC
1 ATTTTAAATAATA-TATTTTTATATGTTTTC
* * *
27145357 ATTTTTAA-CATATATTTTTATATGTTTTT
1 ATTTTAAATAATATATTTTTATATGTTTTC
27145386 ATTTTCAAAT
1 ATTTT-AAAT
27145396 TTTTTCTACG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 9 0.29
28 4 0.13
29 16 0.52
30 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (30 bp):
ATTTTAAATAATATATTTTTATATGTTTTC
Found at i:27145659 original size:81 final size:81
Alignment explanation
Indices: 27145562--27145720 Score: 239
Period size: 81 Copynumber: 2.0 Consensus size: 81
27145552 TTTAAAAACA
27145562 CTGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAA-CGCCGCTAATGCTCGATCTATAGCGG
1 CTGCTAATGCTCGATCTATAGCGGCG-TTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
*
27145626 CGTTTTTAAAAAAAGCG
65 CATTTTTAAAAAAAGCG
* * * * *
27145643 CTGCTAATTCTTGATCTATAGTGGTGTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGTGGC
1 CTGCTAATGCTCGATCTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
*
27145708 ATTTTTTAAAAAA
66 ATTTTTAAAAAAA
27145721 CACAGCTAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
80 11 0.16
81 59 0.84
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (81 bp):
CTGCTAATGCTCGATCTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
ATTTTTAAAAAAAGCG
Found at i:27145729 original size:40 final size:40
Alignment explanation
Indices: 27145540--27145732 Score: 228
Period size: 40 Copynumber: 4.8 Consensus size: 40
27145530 GATCGAGCAT
* * *
27145540 TAGCGACGCTTTTTT-AAAAACACTGCTAATGCTCGATCTA
1 TAGCGGCG-TTTTTTAAAAAACGCCGCTAATGCTCGATCTA
27145580 TAGCGGCGTTTTTTAAAAAACGCCGCTAATGCTCGATCTA
1 TAGCGGCGTTTTTTAAAAAACGCCGCTAATGCTCGATCTA
* * * *
27145620 TAGCGGCGTTTTTAAAAAAAGCGCTGCTAATTCTTGATCTA
1 TAGCGGCGTTTTTTAAAAAA-CGCCGCTAATGCTCGATCTA
* *
27145661 TAGTGGTG-TTTTTAAAAAAGCGCCGCTAATGCTCGATCTA
1 TAGCGGCGTTTTTTAAAAAA-CGCCGCTAATGCTCGATCTA
* * * *
27145701 TAGTGGCATTTTTTAAAAAACACAGCTAATGC
1 TAGCGGCGTTTTTTAAAAAACGCCGCTAATGC
27145733 CACTAAGGCT
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 6 0.05
40 93 0.70
41 34 0.26
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (40 bp):
TAGCGGCGTTTTTTAAAAAACGCCGCTAATGCTCGATCTA
Found at i:27150027 original size:15 final size:15
Alignment explanation
Indices: 27150007--27150040 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
27149997 CTCGGATGAA
*
27150007 CAAAAATGGTACATC
1 CAAAAATGGAACATC
27150022 CAAAAATGGAACATC
1 CAAAAATGGAACATC
27150037 CAAA
1 CAAA
27150041 CATCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.21, G:0.12, T:0.15
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:27150123 original size:16 final size:16
Alignment explanation
Indices: 27150102--27150134 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
27150092 TATAATTTAA
27150102 TCAATTAATTCAATAG
1 TCAATTAATTCAATAG
*
27150118 TCAATTAATTTAATAG
1 TCAATTAATTCAATAG
27150134 T
1 T
27150135 TAAAATGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (16 bp):
TCAATTAATTCAATAG
Found at i:27151195 original size:16 final size:16
Alignment explanation
Indices: 27151170--27151204 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
27151160 CAAAAGATAG
*
27151170 ATATAAGCATTCATAC
1 ATATAAGCATTCACAC
*
27151186 ATATAGGCATTCACAC
1 ATATAAGCATTCACAC
27151202 ATA
1 ATA
27151205 AAATGAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (16 bp):
ATATAAGCATTCACAC
Found at i:27153687 original size:43 final size:43
Alignment explanation
Indices: 27153632--27153715 Score: 116
Period size: 44 Copynumber: 2.0 Consensus size: 43
27153622 CAAAGAATTG
* **
27153632 GGGAAATGTGTTTTGGGGTTTT-GTTAAAATGGCTAAGTGTTT
1 GGGAAATGTGTTTTGGGCTTTTGGGGAAAATGGCTAAGTGTTT
*
27153674 GGGAAATGTTGTTTTGGGCTTTTGGGGGAAATGGCTAAGTGT
1 GGGAAATG-TGTTTTGGGCTTTTGGGGAAAATGGCTAAGTGT
27153716 CAGACATGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 8 0.22
43 13 0.36
44 15 0.42
ACGTcount: A:0.20, C:0.04, G:0.37, T:0.39
Consensus pattern (43 bp):
GGGAAATGTGTTTTGGGCTTTTGGGGAAAATGGCTAAGTGTTT
Found at i:27154078 original size:14 final size:14
Alignment explanation
Indices: 27154031--27154081 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
27154021 TACTAATTAA
27154031 TCTAAACCCTAAACC
1 TCTAAACCCTAAA-C
* * **
27154046 TTTAACCCCTACCC
1 TCTAAACCCTAAAC
27154060 T-TAAACCCTAAAC
1 TCTAAACCCTAAAC
27154073 TCTAAACCC
1 TCTAAACCC
27154082 GTAGCCCATG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 10 0.36
14 9 0.32
15 9 0.32
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (14 bp):
TCTAAACCCTAAAC
Found at i:27154119 original size:15 final size:15
Alignment explanation
Indices: 27154099--27154154 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
27154089 ATGTCCCTTT
27154099 AACCCTTAAACCCTA
1 AACCCTTAAACCCTA
*
27154114 AACCCTTAACCCCT-
1 AACCCTTAAACCCTA
*
27154128 AACCCCT-AACCACTA
1 AACCCTTAAACC-CTA
*
27154143 AA-CTTTAAACCC
1 AACCCTTAAACCC
27154155 ATAATCCTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 3 0.09
14 11 0.33
15 19 0.58
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.20
Consensus pattern (15 bp):
AACCCTTAAACCCTA
Found at i:27154131 original size:14 final size:14
Alignment explanation
Indices: 27154098--27154143 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
27154088 CATGTCCCTT
*
27154098 TAACCCTTAAACCC
1 TAACCCTTAACCCC
27154112 TAAACCCTTAACCCC
1 T-AACCCTTAACCCC
* *
27154127 TAACCCCTAACCAC
1 TAACCCTTAACCCC
27154141 TAA
1 TAA
27154144 ACTTTAAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.20
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:27154171 original size:14 final size:15
Alignment explanation
Indices: 27154148--27154182 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
27154138 CACTAAACTT
27154148 TAAACCCATAATCC-
1 TAAACCCATAATCCA
*
27154162 TAAACTCATAATCCA
1 TAAACCCATAATCCA
27154177 TAAACC
1 TAAACC
27154183 TTAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:27154228 original size:7 final size:7
Alignment explanation
Indices: 27154211--27154324 Score: 111
Period size: 7 Copynumber: 15.9 Consensus size: 7
27154201 AACTATAAAA
27154211 CCCTAACC
1 CCCTAA-C
*
27154219 CCCTATC
1 CCCTAAC
27154226 CCCTTAAC
1 CCC-TAAC
27154234 CCCTAAC
1 CCCTAAC
*
27154241 CCTTTAAC
1 CC-CTAAC
27154249 CCCTAAC
1 CCCTAAC
27154256 CCCTAAC
1 CCCTAAC
27154263 CCCTAAC
1 CCCTAAC
27154270 CCCTAAC
1 CCCTAAC
*
27154277 CACTAAC
1 CCCTAAC
*
27154284 CACTAAC
1 CCCTAAC
*
27154291 CCCTAAA
1 CCCTAAC
* *
27154298 CCTTAAA
1 CCCTAAC
*
27154305 CTCTAAC
1 CCCTAAC
* *
27154312 CCTTAAA
1 CCCTAAC
27154319 CCCTAA
1 CCCTAA
27154325 ACCATAACAC
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
7 72 0.81
8 17 0.19
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:27154327 original size:7 final size:7
Alignment explanation
Indices: 27154249--27154345 Score: 58
Period size: 7 Copynumber: 14.0 Consensus size: 7
27154239 ACCCTTTAAC
*
27154249 CCCTAAC
1 CCCTAAA
*
27154256 CCCTAAC
1 CCCTAAA
*
27154263 CCCTAAC
1 CCCTAAA
27154270 CCCT-AA
1 CCCTAAA
27154276 CCACT-AA
1 CC-CTAAA
*
27154283 CCACTAAC
1 CC-CTAAA
27154291 CCCTAAA
1 CCCTAAA
*
27154298 CCTTAAA
1 CCCTAAA
*
27154305 CTCT-AA
1 CCCTAAA
27154311 CCCTTAAA
1 CCC-TAAA
27154319 CCCTAAA
1 CCCTAAA
*
27154326 CCAT-AA
1 CCCTAAA
*
27154332 CACTAAA
1 CCCTAAA
*
27154339 CCTTAAA
1 CCCTAAA
27154346 ATATTAACTC
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
6 11 0.15
7 54 0.74
8 8 0.11
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:27154332 original size:21 final size:21
Alignment explanation
Indices: 27154245--27154345 Score: 84
Period size: 21 Copynumber: 4.9 Consensus size: 21
27154235 CCTAACCCTT
* * *
27154245 TAACCCCTAACCCCTAACCCC
1 TAACCCCTAAACCCTAAACCA
27154266 TAACCCCT-AACCACT-AACCA
1 TAACCCCTAAACC-CTAAACCA
*
27154286 CTAACCCCTAAACCTTAAACTC-
1 -TAACCCCTAAACCCTAAAC-CA
*
27154308 TAACCCTTAAACCCTAAACCA
1 TAACCCCTAAACCCTAAACCA
* *
27154329 TAA-CACTAAACCTTAAA
1 TAACCCCTAAACCCTAAA
27154346 ATATTAACTC
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
20 18 0.28
21 39 0.60
22 7 0.11
23 1 0.02
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (21 bp):
TAACCCCTAAACCCTAAACCA
Found at i:27154543 original size:29 final size:30
Alignment explanation
Indices: 27154510--27154577 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
27154500 CTTTAAAATT
27154510 ATTTTAAATAATAGTATTTTTAT-T-TTTTC
1 ATTTTAAATAATA-TATTTTTATATGTTTTC
* * *
27154539 ATTTTTAA-CATATATTTTTATATGTTTTT
1 ATTTTAAATAATATATTTTTATATGTTTTC
27154568 ATTTTCAAAT
1 ATTTT-AAAT
27154578 TTTTTCTACG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 9 0.29
28 4 0.13
29 16 0.52
30 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (30 bp):
ATTTTAAATAATATATTTTTATATGTTTTC
Found at i:27154828 original size:80 final size:80
Alignment explanation
Indices: 27154731--27154913 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
27154721 TTAGCGACGC
27154731 TTTTTT-AAAAACACTGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAA-CGCCGCTAATGC
1 TTTTTTAAAAAACACTGCTAATGCTCGATCTATAGCGGCG-TTTTTAAAAAAGCGCCGCTAATGC
27154794 TCGATCTATAGCGGCA
65 TCGATCTATAGCGGCA
* * * * *
27154810 -TTTTTAAAAAAGCGCTGCTAATTCTTGATCTATAGTGGTGTTTTTAAAAAAGCGCCGCTAATGC
1 TTTTTTAAAAAA-CACTGCTAATGCTCGATCTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
*
27154874 TCGATCTATAGTGGCA
65 TCGATCTATAGCGGCA
*
27154890 TTTTTTAAAAAACACAGCTAATGC
1 TTTTTTAAAAAACACTGCTAATGC
27154914 CACTAAGGCT
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 5 0.05
79 16 0.18
80 59 0.65
81 11 0.12
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (80 bp):
TTTTTTAAAAAACACTGCTAATGCTCGATCTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCT
CGATCTATAGCGGCA
Found at i:27154910 original size:40 final size:40
Alignment explanation
Indices: 27154731--27154913 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
27154721 TTAGCGACGC
* * *
27154731 TTTTTT-AAAAACACTGCTAATGCTCGATCTATAGCGGCG
1 TTTTTTAAAAAACGCCGCTAATGCTCGATCTATAGCGGCA
27154770 TTTTTTAAAAAACGCCGCTAATGCTCGATCTATAGCGGCA
1 TTTTTTAAAAAACGCCGCTAATGCTCGATCTATAGCGGCA
* * * *
27154810 -TTTTTAAAAAAGCGCTGCTAATTCTTGATCTATAGTGG--
1 TTTTTTAAAAAA-CGCCGCTAATGCTCGATCTATAGCGGCA
*
27154848 TGTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGTGGCA
1 T-TTTTTAAAAAA-CGCCGCTAATGCTCGATCTATAGCGGCA
* *
27154890 TTTTTTAAAAAACACAGCTAATGC
1 TTTTTTAAAAAACGCCGCTAATGC
27154914 CACTAAGGCT
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 17 0.13
40 97 0.77
41 11 0.09
42 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (40 bp):
TTTTTTAAAAAACGCCGCTAATGCTCGATCTATAGCGGCA
Found at i:27162208 original size:24 final size:25
Alignment explanation
Indices: 27162181--27162229 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
27162171 CATTAATACA
* *
27162181 CCAACTTACAACTAT-CCAAAATAG
1 CCAACTCACAACCATACCAAAATAG
*
27162205 CCAACTCATAACCATACCAAAATAG
1 CCAACTCACAACCATACCAAAATAG
27162230 GCCAGCATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.47, C:0.31, G:0.04, T:0.18
Consensus pattern (25 bp):
CCAACTCACAACCATACCAAAATAG
Found at i:27162695 original size:24 final size:24
Alignment explanation
Indices: 27162629--27162702 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
27162619 AAGTCTGTCT
* *
27162629 GGAGAAGATTTAGGAGCTCATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
27162653 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
27162677 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
27162701 GG
1 GG
27162703 TGAACTTTGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.31, C:0.07, G:0.41, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:27164163 original size:27 final size:26
Alignment explanation
Indices: 27164117--27164225 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 26
27164107 AAGCGTCCTA
* * *
27164117 GTGGCTATGCTACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGTTCTG
27164144 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGTTCTG
*
27164171 GTGGTTCTGCCACGATTATCTGTGTCTG
1 GTGGCTCTGCCAC-ATTATCTGT-TCTG
* *
27164199 GTGACTCTGTCACATTATCTGTTCTG
1 GTGGCTCTGCCACATTATCTGTTCTG
27164225 G
1 G
27164226 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.39
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:27170292 original size:24 final size:24
Alignment explanation
Indices: 27170259--27170332 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
27170249 AAGTCTGTCT
*
27170259 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
27170283 GGAGAGGATTTAGAAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
27170307 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
27170331 GG
1 GG
27170333 TGAACTGTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.32, C:0.05, G:0.41, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:27171803 original size:27 final size:26
Alignment explanation
Indices: 27171762--27171873 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
27171752 AGGAAGCATC
*
27171762 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
27171789 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
27171816 CTGGTGGTTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
27171844 TTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
27171870 CTGG
1 CTGG
27171874 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.09
27 49 0.70
28 15 0.21
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:27171866 original size:54 final size:54
Alignment explanation
Indices: 27171762--27171873 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
27171752 AGGAAGCATC
*
27171762 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * * * *
27171816 CTGGTGGTTCTGCCACAATTATCTGTATTTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
27171870 CTGG
1 CTGG
27171874 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 35 0.69
55 16 0.31
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:27178260 original size:42 final size:42
Alignment explanation
Indices: 27178203--27178367 Score: 181
Period size: 42 Copynumber: 3.9 Consensus size: 42
27178193 TAGGCTTATG
27178203 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
27178245 TGTGATTTCATGTAAGACCATGTCTAGGACATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * ** * *
27178287 CGGGACATCGTGTAAGA-CATAGT-TGGGCTATCGGCATCGATATA
1 TGTGATTTCATGTAAGACCATA-TCTGGGATAT-GGCATCG--ATA
**
27178331 TGTGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCAT
27178368 TGGCATCTTA
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 8 0.08
42 59 0.60
44 20 0.20
45 11 0.11
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:27179660 original size:20 final size:20
Alignment explanation
Indices: 27179635--27179686 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
27179625 TGGGCTGAGG
27179635 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
27179655 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
27179675 ACACGGGCGTGT
1 ACACGGGCGTGT
27179687 GTGTGGCCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:27182012 original size:46 final size:46
Alignment explanation
Indices: 27181891--27182013 Score: 210
Period size: 46 Copynumber: 2.7 Consensus size: 46
27181881 TACATTGCAC
* * *
27181891 GAACTCGGACTCAACTCAATGAGTTTGGACGTTCACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCACATCCATAAGT
*
27181937 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCACATCCATAAGT
27181983 GAACTCGGACTCAACTCAACGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGTTCGGATG
27182014 ACCAAATATC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGTTCACATCCATAAGT
Found at i:27194410 original size:22 final size:24
Alignment explanation
Indices: 27194352--27194446 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 24
27194342 ATAGATATAA
* *
27194352 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
27194376 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
27194400 -AAAATATATACATAAGATAACATGT
1 AAAAATATATACATAATAT-A-ATGT
* *
27194425 AGAAAAAAATATAAATAATATA
1 --AAAAATATATACATAATATA
27194447 GTATTAAGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
22 16 0.29
23 1 0.02
24 3 0.05
25 20 0.36
27 1 0.02
28 15 0.27
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.28
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:27194467 original size:25 final size:23
Alignment explanation
Indices: 27194432--27194550 Score: 87
Period size: 27 Copynumber: 5.0 Consensus size: 23
27194422 TGTAGAAAAA
*
27194432 AATATAAATAATATAGTATTAAGG
1 AATATACATAATATAGTATTAA-G
* *
27194456 ATATATACATAAAATAGTATAATATAT
1 A-ATATACATAATATAGTAT--TA-AG
* * *
27194483 ATATATACGTAATATAGAATTTAG
1 A-ATATACATAATATAGTATTAAG
* *
27194507 AATATACCTAATATA-TATAAAG
1 AATATACATAATATAGTATTAAG
* *
27194529 AATATATATAATATAATATTAA
1 AATATACATAATATAGTATTAA
27194551 CATAATAAAT
Statistics
Matches: 75, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
22 17 0.23
23 18 0.24
24 3 0.04
25 17 0.23
27 19 0.25
28 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (23 bp):
AATATACATAATATAGTATTAAG
Found at i:27202020 original size:618 final size:613
Alignment explanation
Indices: 27200792--27202029 Score: 1400
Period size: 618 Copynumber: 2.0 Consensus size: 613
27200782 ATTAGTGGTA
* * * **
27200792 ATGTAACATCCCAAAATTGGGTCTAGTCAGAACAATGGTTTCGGACCACAAATCCGATGTCAAAA
1 ATGTAACATCCCAAAATAGGGCCTAGTCAGAACAACGGTTTCGGACCACAAATCCGACATCAAAA
*
27200857 TATTTATTTTATGATTATTATGAGGCCTAGAATATGAAAGTAAGAATGTGTTAAAGTTTCATGAA
66 TATTTATTTTATGATTATTATGAGGCCTAGAATATGAAAATAAGAATGTGTTAAAGTTTCATGAA
27200922 GAAATTCTTAGTGTAAGGTGTCCAATTGAAATTAGGGACAAAATTGAATAAATAGCAAAACTTGG
131 GAAATTCTTAGTGTAAGGTGTCCAATTGAAATTAGGGACAAAATTGAATAAATAGCAAAACTTGG
* * * *
27200987 ATTCTAGAAGCAATTTGCATGAAATTGCTTTAGATTATTAATTAGAAGGTCTTAAAGAGTAATTT
196 ATTCTAGAAGAAATTTGCATGAAATCGCTTTAGAATATTAATTAGAAGGTCTTAAAGAGCAATTT
* * *
27201052 GCCCAATTTCTAAGTTTTTGAACGAAAATGGGCATACATGGAAAATTTTGGAAGTTCAGTAAGGA
261 GCCCAATTTCTAAGTTTTTGAACAAAAATGGGCATACATGGAAAATTTTGAAAG-T-AGAAAGGA
* * ***
27201117 AAGGCATTTTGGTATTTTGGAAATAAAATCAATAAAAAGGGAAAATGAAGGCAAAAATCAGCCAT
324 AAGGCATTTTGGTATTTTGGAAATAAAATAAATAAAAAGGGAAAAAGAACAAAAAAATCAGCCAT
** *
27201182 TCTTCTCCCTCTTGTTGTCGAAATTTCAAAGGGCACCATAGCTAGAGATTTTTTCACTTTCCAAG
389 TCTTCT-CCTCTTGTCATCGAAATTTCAAAGGGCACCATAGCTAGAGA-GTTTTCACTTTCCAAG
* **
27201247 CTCAATAGTAAGTGACTCCTAACCTCGTATTTAATGTTCTTTGTATTTTTGAGATCATTGTAACA
452 CTCAATAGTAAGTGACTCCTAACCTCGTATTTAATGTTCTTTGTATTTTTGAAATCACGGTAACA
** * *
27201312 TGTTCTCTCCATTTCTACCCATATTTTAAGCTAGGGTTCATGTACGCAAAATGACCCATGCGTGA
517 TACTCTCTCCATTTCTACCCATATTTCAAGCTAGGGTTCATGTACGCAAAATGACCCATGCATGA
*** *
27201377 CATGTTTGTTCCTTGATGATTTATGGGGGAAT
582 CATACATGTTCCTTGATGATTTATGGAGGAAT
**
27201409 ATGTAACATCCCGTAATAGGGCCTAGTC-GAAACAACGGTTTCAGGACCACAAATCCGACATCAA
1 ATGTAACATCCCAAAATAGGGCCTAGTCAG-AACAACGGTTTC-GGACCACAAATCCGACATCAA
* * *
27201473 AATATTTATTTTATGATTATTATGAGG-TTCAGAATAT-AAGAATATGCATGTGTTAAAGTTTCA
64 AATATTTATTTTATGATTATTATGAGGCCT-AGAATATGAA-AATAAGAATGTGTTAAAGTTTCA
* * * *
27201536 TGAAGGAATTCTTTA-TGTAAGGTGTCCAATTGGACATTAGGGACCAAATTGAATAAATTGCAAA
127 TGAAGAAATTC-TTAGTGTAAGGTGTCCAATT-GAAATTAGGGACAAAATTGAATAAATAGCAAA
* * * * * * *
27201600 ACTTGGGTTTTAGAAGAAATTTGTATGAAATCGCTTTAGAATATTAATTAGAGGGTCTTGAGGGG
190 ACTTGGATTCTAGAAGAAATTTGCATGAAATCGCTTTAGAATATTAATTAGAAGGTCTTAAAGAG
** * **
27201665 CAATTTGCCCAATTTCTAAGTTTTTGGGCAAAAATGGGCTTGTATGGATGAAATTTT-AAAG-A-
255 CAATTTGCCCAATTTCTAAGTTTTTGAACAAAAATGGGCATACATGGA--AAATTTTGAAAGTAG
* * ** *
27201727 AAAGGCTTAAGGGCATTTTGGTCA-TTTGGTAATTTAATGAAATAAAATGGGAAAAAGAACAAAA
318 AAAGG---AAAGGCATTTTGGT-ATTTTGGAAATAAAAT-AAATAAAAAGGGAAAAAGAACAAAA
* * *
27201791 AAATCAGCCATTCTTCT-TTTTTGTCCATCCGAAATTCTC-AA-GTCACCATAGCTAG-G-GTTT
378 AAATCAGCCATTCTTCTCCTCTTGT-CAT-CGAAATT-TCAAAGGGCACCATAGCTAGAGAGTTT
* *
27201851 TCAACATTTTCAAGCTCAATAGTAAGTG-CTACC-AAGCCAT-GTTTTTAATGTT-TTTCGTATT
440 TC-AC-TTTCCAAGCTCAATAGTAAGTGACT-CCTAA-CC-TCGTATTTAATGTTCTTT-GTATT
* * * * *
27201912 TTTGAAATCCCGGTAGCTTACTCTCTCTATTTCTACCCATATTTCATGCTAGGGTTCATGTTTA-
499 TTTGAAATCACGGTAACATACTCTCTCCATTTCTACCCATATTTCAAGCTAGGGTTCATG--TAC
* * * ** * *
27201976 G-AAATTTACCGATGCATGAGTTACATGTAT-TTTGATGGTTTATGGAGGAAT
562 GCAAAATGACCCATGCATGACATACATGT-TCCTTGATGATTTATGGAGGAAT
27202027 ATG
1 ATG
27202030 AAAGTTGGAT
Statistics
Matches: 521, Mismatches: 75, Indels: 49
0.81 0.12 0.08
Matches are distributed among these distances:
616 10 0.02
617 48 0.09
618 234 0.45
619 169 0.32
620 51 0.10
621 9 0.02
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (613 bp):
ATGTAACATCCCAAAATAGGGCCTAGTCAGAACAACGGTTTCGGACCACAAATCCGACATCAAAA
TATTTATTTTATGATTATTATGAGGCCTAGAATATGAAAATAAGAATGTGTTAAAGTTTCATGAA
GAAATTCTTAGTGTAAGGTGTCCAATTGAAATTAGGGACAAAATTGAATAAATAGCAAAACTTGG
ATTCTAGAAGAAATTTGCATGAAATCGCTTTAGAATATTAATTAGAAGGTCTTAAAGAGCAATTT
GCCCAATTTCTAAGTTTTTGAACAAAAATGGGCATACATGGAAAATTTTGAAAGTAGAAAGGAAA
GGCATTTTGGTATTTTGGAAATAAAATAAATAAAAAGGGAAAAAGAACAAAAAAATCAGCCATTC
TTCTCCTCTTGTCATCGAAATTTCAAAGGGCACCATAGCTAGAGAGTTTTCACTTTCCAAGCTCA
ATAGTAAGTGACTCCTAACCTCGTATTTAATGTTCTTTGTATTTTTGAAATCACGGTAACATACT
CTCTCCATTTCTACCCATATTTCAAGCTAGGGTTCATGTACGCAAAATGACCCATGCATGACATA
CATGTTCCTTGATGATTTATGGAGGAAT
Found at i:27214933 original size:46 final size:47
Alignment explanation
Indices: 27214845--27215108 Score: 172
Period size: 46 Copynumber: 5.6 Consensus size: 47
27214835 TTATTTGTGT
* * * *
27214845 GCCAGTGTAAGA-CATGTCTGGGACCTGCATC-GTTCCCGAGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCT-ACAAGATGTAA
*
27214891 GCCAGTATAAGA-CATGTCTGGGACATGCATCGGCTACAAGATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATGTAA
* * *
27214935 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACGAATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTAC-AAGATGT-A-A
* * *
27214985 GCTAGTGTAAGACCATGTCTGGGACATTGCGTCGGCCT-C--GATTTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACA-TGCATCGG-CTACAAGA-TGT-A-A
* * * * ** *
27215034 GTCAATGTAAGAACATGTCTGGGACATGGCATCGACTTGATGGATG--A
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTACA-AGATGTAA
*
27215081 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGACCATGTCTGGGACATG
27215109 GCATTGGAAT
Statistics
Matches: 175, Mismatches: 26, Indels: 34
0.74 0.11 0.14
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 51 0.29
47 28 0.16
48 4 0.02
49 32 0.18
50 29 0.17
51 4 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATGTAA
Found at i:27215054 original size:49 final size:47
Alignment explanation
Indices: 27214898--27215112 Score: 165
Period size: 49 Copynumber: 4.5 Consensus size: 47
27214888 TAAGCCAGTA
* * * *
27214898 TAAGA-CATGTCTGGGACAT-GCATCGGCTAC-A-AGATGTGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACT-CGATGGATGAGTCAATG
* * * *
27214942 TAAGACCATGTCTAGGACATGGCATCGGCACGAATATGTGA-GAG-CTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACTCG---ATG-GATGAGTC-AATG
* * * *
27214992 TAAGACCATGTCTGGGACATTGCGTCGGCCTCGATTTTGAT-AGTCAATG
1 TAAGACCATGTCTGGGACATGGCATC-GACTCGA--TGGATGAGTCAATG
* * *
27215041 TAAGAACATGTCTGGGACATGGCATCGACTTGATGGATGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGTCAATG
27215088 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
27215113 TGGAATTATA
Statistics
Matches: 137, Mismatches: 19, Indels: 27
0.75 0.10 0.15
Matches are distributed among these distances:
44 5 0.04
45 14 0.10
46 12 0.09
47 31 0.23
48 6 0.04
49 32 0.23
50 31 0.23
51 6 0.04
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGTCAATG
Found at i:27252509 original size:22 final size:22
Alignment explanation
Indices: 27252481--27252524 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27252471 TTAATTTTAC
27252481 TAAAATAGCATTCGAAAAAAAT
1 TAAAATAGCATTCGAAAAAAAT
** *
27252503 TAAAATAGTTTTTGAAAAAAAT
1 TAAAATAGCATTCGAAAAAAAT
27252525 GAAATGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (22 bp):
TAAAATAGCATTCGAAAAAAAT
Found at i:27252542 original size:18 final size:19
Alignment explanation
Indices: 27252519--27252559 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
27252509 AGTTTTTGAA
27252519 AAAAATGAAA-TGAAATTT
1 AAAAATGAAATTGAAATTT
* *
27252537 AAAAATTAAATTGAGATTT
1 AAAAATGAAATTGAAATTT
27252556 AAAA
1 AAAA
27252560 GAATAAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (19 bp):
AAAAATGAAATTGAAATTT
Found at i:27259453 original size:28 final size:27
Alignment explanation
Indices: 27259408--27259515 Score: 126
Period size: 28 Copynumber: 3.9 Consensus size: 27
27259398 GGAGGAAGCG
* *
27259408 TTCTAGTGGCTCTACCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAA-TATCTGT
*
27259436 TTCTGGTGCCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
27259464 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * ** *
27259491 ATCTAGTGAATCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCACAATATCT
27259516 ATTCTGGCAG
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 29 0.41
28 39 0.56
29 2 0.03
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:27267297 original size:28 final size:27
Alignment explanation
Indices: 27267257--27267339 Score: 121
Period size: 27 Copynumber: 3.0 Consensus size: 27
27267247 GGAGGAAGCG
27267257 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
*
27267285 TTCTGGTGGCTCTACCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
27267312 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
27267339 T
1 T
27267340 CTAGCAGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
27 32 0.65
28 17 0.35
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:27273014 original size:24 final size:22
Alignment explanation
Indices: 27272969--27273033 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 22
27272959 TTAAAGAAAC
*
27272969 TGGATTATGTATTCGATTTATATT
1 TGGATTATGT-TT-GATTTATAAT
27272993 TGGATTATGTTTGTATTATATAAT
1 TGGATTATGTTTG-ATT-TATAAT
*
27273017 TGGCTTA-GTTTGATTTA
1 TGGATTATGTTTGATTTA
27273034 ATTTAGATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 2 0.05
22 4 0.11
23 10 0.27
24 21 0.57
ACGTcount: A:0.25, C:0.03, G:0.18, T:0.54
Consensus pattern (22 bp):
TGGATTATGTTTGATTTATAAT
Found at i:27279218 original size:38 final size:38
Alignment explanation
Indices: 27279176--27279296 Score: 161
Period size: 38 Copynumber: 3.1 Consensus size: 38
27279166 TTATGCTAGA
*
27279176 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* *
27279214 ATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGT
1 ATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
27279252 ATTATATCTGAGTTTAAAGTCCTGTAGGCTTCGTGCTGGT
1 ATTATATCTG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
*
27279292 GTTAT
1 ATTAT
27279297 GTTCAGGTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 45 0.62
39 6 0.08
40 21 0.29
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.36
Consensus pattern (38 bp):
ATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:27281233 original size:26 final size:26
Alignment explanation
Indices: 27281204--27281311 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
27281194 TGGTACAAAT
27281204 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27281230 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27281256 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27281282 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27281308 TGAT
1 TGAT
27281312 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27282820 original size:26 final size:26
Alignment explanation
Indices: 27282791--27282843 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27282781 TTTACAGTTT
27282791 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
27282817 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
27282843 T
1 T
27282844 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:27288285 original size:26 final size:26
Alignment explanation
Indices: 27288256--27288363 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
27288246 TGGTACAAAT
27288256 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27288282 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27288308 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27288334 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27288360 TGAT
1 TGAT
27288364 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27304207 original size:14 final size:14
Alignment explanation
Indices: 27304188--27304215 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27304178 TGAATATTAC
27304188 AATTGAGTCTTAAT
1 AATTGAGTCTTAAT
27304202 AATTGAGTCTTAAT
1 AATTGAGTCTTAAT
27304216 GGAGGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
AATTGAGTCTTAAT
Found at i:27307869 original size:31 final size:31
Alignment explanation
Indices: 27307831--27307893 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
27307821 TTTGCCAAAG
27307831 TATAAATTATGAAATCTATTGGTTAATATGA
1 TATAAATTATGAAATCTATTGGTTAATATGA
27307862 TATAAATTATGAAATCTATTGGTTAATATGA
1 TATAAATTATGAAATCTATTGGTTAATATGA
27307893 T
1 T
27307894 GATTAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (31 bp):
TATAAATTATGAAATCTATTGGTTAATATGA
Found at i:27310465 original size:87 final size:87
Alignment explanation
Indices: 27310319--27310499 Score: 292
Period size: 87 Copynumber: 2.1 Consensus size: 87
27310309 CAGTTGTGTG
27310319 GAGGACACGACCTAGCACACGGGAGTGTGGCCTGGCCGTGTGGTTCAAATTACTTGCTGACGTCA
1 GAGGACACGACCTAGCACACGGGAGTGTGGCCTGGCCGTGTGGTTCAAATTACTTGCTGACGTCA
* *
27310384 CAAATAAAGAGTTATATGAGCT
66 CAAATAAAGAGTTACACGAGCT
* **
27310406 GAGGACAC-AGCCTAGCACACGGGCGTGTGGCCTGGCCGTGTGGTTCAAATTACTTGCTGATTTC
1 GAGGACACGA-CCTAGCACACGGGAGTGTGGCCTGGCCGTGTGGTTCAAATTACTTGCTGACGTC
*
27310470 ACAAATAAAGAGTTACACGGGCT
65 ACAAATAAAGAGTTACACGAGCT
27310493 GAGGACA
1 GAGGACA
27310500 TGATCGTGTC
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
86 1 0.01
87 86 0.99
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (87 bp):
GAGGACACGACCTAGCACACGGGAGTGTGGCCTGGCCGTGTGGTTCAAATTACTTGCTGACGTCA
CAAATAAAGAGTTACACGAGCT
Found at i:27320971 original size:45 final size:43
Alignment explanation
Indices: 27320867--27321002 Score: 143
Period size: 45 Copynumber: 3.1 Consensus size: 43
27320857 ATATAATCAC
* * * *
27320867 ATATCGATGTCACTGTCCCAGATAGGGTCTTACACGAATCA-A-
1 ATATCGATGCCAC-GTCCCAGACATGGTCTTACACGAAACACAT
*
27320909 ATA-CGATGCCGATGTCCCAGACATGGTCTTACACGTAAACACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACG-AAACACAT
* *
27320953 ATATCGATGCCAACGTCCCAGACGTGGTCTTACATGAGAACACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACGA-AACACAT
27320998 ATATC
1 ATATC
27321003 AGAAATCCTA
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
41 26 0.33
42 8 0.10
43 1 0.01
44 4 0.05
45 40 0.51
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATATCGATGCCACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:27333984 original size:24 final size:24
Alignment explanation
Indices: 27333945--27334020 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
27333935 AGATGACTAT
* * *
27333945 ATAAAATTTTTCAATAAATAAAAA
1 ATAAAATTATTAAATAATTAAAAA
27333969 ATAAAATTATTAAAT-ATTAAAATA
1 ATAAAATTATTAAATAATTAAAA-A
* *
27333993 ATATAA-TA-TAAATATTTAAAAA
1 ATAAAATTATTAAATAATTAAAAA
27334015 ATAAAA
1 ATAAAA
27334021 AAATAATATG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.25
23 14 0.32
24 19 0.43
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (24 bp):
ATAAAATTATTAAATAATTAAAAA
Found at i:27339422 original size:19 final size:19
Alignment explanation
Indices: 27339398--27339437 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
27339388 CTTTTTTGAA
27339398 TTCATTCAACATTTCCAAG
1 TTCATTCAACATTTCCAAG
*
27339417 TTCATTCAACATTTCTAAG
1 TTCATTCAACATTTCCAAG
27339436 TT
1 TT
27339438 TGACGCAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (19 bp):
TTCATTCAACATTTCCAAG
Found at i:27340648 original size:23 final size:23
Alignment explanation
Indices: 27340622--27340665 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
27340612 GAGAATGAAT
*
27340622 AAAAGAAAAGGAAAAAGGAAAAA
1 AAAAGAAAAGAAAAAAGGAAAAA
*
27340645 AAAAGAAAAGAAAAAATGAAA
1 AAAAGAAAAGAAAAAAGGAAA
27340666 TAGAAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (23 bp):
AAAAGAAAAGAAAAAAGGAAAAA
Found at i:27346064 original size:4 final size:4
Alignment explanation
Indices: 27346057--27346083 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
27346047 CTCAAGTTGC
27346057 TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TAT
27346084 GGTAACATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:27347566 original size:8 final size:8
Alignment explanation
Indices: 27347553--27347591 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 8
27347543 TACTTTTGCA
27347553 TAAATTTT
1 TAAATTTT
27347561 TAAATTTT
1 TAAATTTT
27347569 TAAATTTTT
1 TAAA-TTTT
*
27347578 TTAATATTT
1 TAAAT-TTT
27347587 TAAAT
1 TAAAT
27347592 CAATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 13 0.48
9 14 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TAAATTTT
Found at i:27347578 original size:18 final size:18
Alignment explanation
Indices: 27347553--27347591 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
27347543 TACTTTTGCA
*
27347553 TAAA-TTTTTAAAT-TTT
1 TAAATTTTTTTAATATTT
27347569 TAAATTTTTTTAATATTT
1 TAAATTTTTTTAATATTT
27347587 TAAAT
1 TAAAT
27347592 CAATTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 8 0.40
18 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TAAATTTTTTTAATATTT
Found at i:27347617 original size:21 final size:20
Alignment explanation
Indices: 27347555--27347600 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
27347545 CTTTTGCATA
27347555 AATTTTTAA-ATTTTTAAAT-
1 AATTTTTAATA-TTTTAAATC
*
27347574 -TTTTTTAATATTTTAAATC
1 AATTTTTAATATTTTAAATC
27347593 AATTTTTA
1 AATTTTTA
27347601 TCATTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 15 0.68
19 1 0.05
20 6 0.27
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
AATTTTTAATATTTTAAATC
Found at i:27348081 original size:7 final size:8
Alignment explanation
Indices: 27348062--27348124 Score: 51
Period size: 8 Copynumber: 8.0 Consensus size: 8
27348052 TGTTGAAACT
27348062 TTTTTATA
1 TTTTTATA
27348070 TTTTTATA
1 TTTTTATA
27348078 TTTTTGA-A
1 TTTTT-ATA
*
27348086 TTTTTAAAA
1 TTTTT-ATA
* *
27348095 TTATTCTA
1 TTTTTATA
*
27348103 ATTTTA-A
1 TTTTTATA
27348110 TTTTT-TA
1 TTTTTATA
27348117 TTTTTATA
1 TTTTTATA
27348125 GAGATTTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
7 11 0.26
8 26 0.60
9 6 0.14
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (8 bp):
TTTTTATA
Found at i:27353353 original size:38 final size:38
Alignment explanation
Indices: 27353302--27353378 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
27353292 CTATGAGGAC
27353302 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
1 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
27353340 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
1 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
27353378 T
1 T
27353379 AAGCATGTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (38 bp):
TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
Found at i:27363060 original size:48 final size:47
Alignment explanation
Indices: 27362984--27363099 Score: 137
Period size: 47 Copynumber: 2.5 Consensus size: 47
27362974 TGTATGCTAG
* * *
27362984 TGTAAGACATGTCTGGGGCAT-GCATCGGC-TACATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGGCATCGGCATACA-GACGAGAGCCAA
* * * *
27363030 TGTAAGACCATGTTTGGGACATGGCATCGGCATTCAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACATGGCATCGGCATACAGACGAGAGCCAA
27363078 TGTAAGACATGTCTGGGACATG
1 TGTAAGACATGTCTGGGACATG
27363100 CATGGGCCTC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
46 7 0.12
47 26 0.44
48 23 0.39
49 3 0.05
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGGCATCGGCATACAGACGAGAGCCAA
Found at i:27363847 original size:19 final size:19
Alignment explanation
Indices: 27363819--27363862 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
27363809 ACTAACATTG
*
27363819 AAAGTTATTATATGAATGC
1 AAAGTAATTATATGAATGC
27363838 AAAGTAATTATATGAATGC
1 AAAGTAATTATATGAATGC
27363857 AAAGTA
1 AAAGTA
27363863 GTCTTTCGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
AAAGTAATTATATGAATGC
Found at i:27364689 original size:19 final size:19
Alignment explanation
Indices: 27364662--27364704 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
27364652 ATAAAGTCTT
*
27364662 AATGATTCGAAAATGTTGA
1 AATGCTTCGAAAATGTTGA
27364681 AATGCTTCGAAAATGTTGA
1 AATGCTTCGAAAATGTTGA
27364700 AATGC
1 AATGC
27364705 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (19 bp):
AATGCTTCGAAAATGTTGA
Found at i:27370170 original size:37 final size:37
Alignment explanation
Indices: 27370128--27370201 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
27370118 TAAGCCAGTG
27370128 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
1 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
* *
27370165 TAAGACATGTCTGGGACATTCATCGACTACACGATGT
1 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
27370202 GTCAGTGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (37 bp):
TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
Found at i:27382415 original size:40 final size:40
Alignment explanation
Indices: 27382239--27382461 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
27382229 TCCTCGTTCA
* * * * *
27382239 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
27382278 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
27382318 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
27382358 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
27382398 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
27382438 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
27382462 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:27390319 original size:40 final size:40
Alignment explanation
Indices: 27390143--27390365 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
27390133 TCCTCGTTCA
* * * * *
27390143 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
27390182 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
27390222 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
27390262 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
27390302 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
27390342 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
27390366 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:27403505 original size:45 final size:45
Alignment explanation
Indices: 27403431--27403519 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
27403421 AATTATGTGA
* *
27403431 TCTGAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGCT
1 TCTGAACTCATTGAGTTATGGTATAAGTTCATGATATATATGGCT
* * *
27403476 TCTGAACTCATTGAGTTATGGTATGAGTTCGTGATGTATATGGC
1 TCTGAACTCATTGAGTTATGGTATAAGTTCATGATATATATGGC
27403520 ACATGTTTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.39
Consensus pattern (45 bp):
TCTGAACTCATTGAGTTATGGTATAAGTTCATGATATATATGGCT
Found at i:27407320 original size:30 final size:30
Alignment explanation
Indices: 27407286--27407347 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
27407276 GTAAGGCCTA
27407286 ATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTAT
27407316 ATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTAT
27407346 AT
1 AT
27407348 ATGTGATAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.32, T:0.31
Consensus pattern (30 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:27407372 original size:47 final size:47
Alignment explanation
Indices: 27407319--27407826 Score: 874
Period size: 47 Copynumber: 10.8 Consensus size: 47
27407309 AGTGTATATG
27407319 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
27407366 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
27407413 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
*
27407460 GCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
27407507 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
*
27407554 GCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
27407601 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* *
27407648 GCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
*
27407695 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* * * * *
27407742 GCCGATGTG-TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* * * * *
27407788 GCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27407827 TCCCGAAGGG
Statistics
Matches: 442, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 40 0.09
47 402 0.91
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
Found at i:27408001 original size:37 final size:37
Alignment explanation
Indices: 27407945--27408023 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27407935 CCGAGCTCTA
* * *
27407945 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27407982 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27408019 AAGAC
1 AAGAC
27408024 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.