genome.fa.s1203.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold522
Parameters: 2 7 7 80 10 50 1000
Length:  34010

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2473--2661	38	4.9	39	82	8	201	23	19	29	27	1.98
2498--2689	78	2.5	77	83	4	237	23	19	29	27	1.99
7652--7914	40	6.6	40	87	3	316	26	28	20	24	1.99
9782--9989	75	2.7	75	88	4	303	32	15	17	34	1.92
9620--9952	162	2.0	162	85	6	451	32	15	17	34	1.92
9782--10015	79	3.1	75	84	7	285	31	14	18	34	1.92
10009--10044	14	2.7	13	86	4	54	30	13	5	50	1.65
9638--10106	242	2.0	235	84	4	618	31	15	18	33	1.93
9953--10162	88	2.4	86	82	5	235	29	13	19	37	1.90
10195--10284	45	2.0	45	82	0	108	24	17	26	31	1.97
10693--10756	29	2.2	29	97	0	119	35	40	0	23	1.55
11477--11596	6	19.3	6	68	19	68	47	15	17	19	1.83
11461--11596	31	4.4	31	83	3	150	48	15	16	19	1.81
11733--11834	27	3.8	26	84	5	105	35	20	24	19	1.96
11992--12056	22	3.0	22	80	8	78	33	23	23	20	1.97
12474--12694	27	8.2	27	92	0	334	23	22	20	33	1.97
12481--12720	81	3.0	80	82	7	279	25	20	19	34	1.96
12689--13275	54	10.8	54	85	2	523	31	8	20	39	1.82
12743--13275	81	6.6	80	81	2	512	30	8	20	40	1.82
12797--13275	108	4.4	108	89	1	627	31	8	19	40	1.81
12743--13275	27	19.7	26	79	6	463	30	8	20	40	1.82
13632--13676	20	2.1	22	84	8	58	33	2	4	60	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13632--13699	22	3.1	22	76	14	59	35	1	5	57	1.32
13637--13739	31	3.5	30	77	16	108	33	1	7	56	1.39
18130--18255	28	4.5	28	96	1	227	30	29	15	25	1.95
26249--26343	27	3.6	27	91	5	142	29	29	14	26	1.95
29838--30018	39	4.6	38	75	13	152	26	28	20	24	1.99

Tables:   1

The End!