Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2911
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10503
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Found at i:1148 original size:46 final size:46
Alignment explanation
Indices: 1095--1185 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
1085 TATATATACA
* * *
1095 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * * *
1141 CATCTCATACGCATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
1186 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:1602 original size:47 final size:47
Alignment explanation
Indices: 1195--1600 Score: 587
Period size: 47 Copynumber: 8.6 Consensus size: 47
1185 TATACACATC
* **
1195 CACATTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
1242 CACATTTATCACATTGGTCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
1289 CATATTCTTCACATTGGTCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* *
1336 CACATTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* *
1383 CATATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
1430 CATATTCATCACGTTGGCCATTCGGCCTTATCACACATATACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
1477 CACATTCATCACATTGGCCATTCGGTCTTACCACACAAATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
** * * *
1524 CACATTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
*
1571 CACATTCATCACATTTGCCATTCGGCCTTA
1 CACATTCATCACATTGGCCATTCGGCCTTA
1601 GCTCATGTAT
Statistics
Matches: 327, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 327 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
Found at i:1620 original size:141 final size:141
Alignment explanation
Indices: 1165--1631 Score: 594
Period size: 141 Copynumber: 3.3 Consensus size: 141
1155 TTCGCATTAA
* ** * * *
1165 CCATTCGGCTTTCCCACATATATACACATCCACATTCATCACATTGGCCATTCTGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
** *
1230 TGTATGCATGTTCACATTTATCACATTGGT-CATTCGGCCTTATCACATATATGCATGTTCATAT
66 CATATGCATGTTCACATTCATCACATT-GTCCATTCGGCCTTATCACATATATGCATGTTCATAT
*
1294 TCTTCACATTGG
130 TCATCACATTGG
* * **
1306 TCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * *
1371 GATATACATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
66 CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
*
1436 CATCACGTTGG
131 CATCACATTGG
** * *
1447 CCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTACCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * * * * *
1512 CAAATGCATGTTCACATTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTTCACATT
66 CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
*
1577 CATCACATTTG
131 CATCACATTGG
* * ** *
1588 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACAT
1632 AAAATCCTAA
Statistics
Matches: 283, Mismatches: 42, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
140 1 0.00
141 282 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (141 bp):
CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
CATCACATTGG
Found at i:2672 original size:23 final size:23
Alignment explanation
Indices: 2646--2717 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 23
2636 ATAAGTATAG
2646 ATAGAGATGTTTAATATTGATCA
1 ATAGAGATGTTTAATATTGATCA
* *
2669 AT--AG-TGTTTACTTATT-AT-T
1 ATAGAGATGTTTA-ATATTGATCA
2688 ATAGATAGATGTTTAATATCTGATCA
1 ATAG--AGATGTTTAATAT-TGATCA
2714 ATAG
1 ATAG
2718 TGTTTACTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 15
0.65 0.07 0.27
Matches are distributed among these distances:
19 2 0.06
20 8 0.22
21 6 0.17
23 7 0.19
24 7 0.19
25 2 0.06
26 4 0.11
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (23 bp):
ATAGAGATGTTTAATATTGATCA
Found at i:2678 original size:20 final size:20
Alignment explanation
Indices: 2653--2723 Score: 65
Period size: 24 Copynumber: 3.3 Consensus size: 20
2643 TAGATAGAGA
2653 TGTTTAATATTGATCAATAG
1 TGTTTAATATTGATCAATAG
2673 TGTTTACTTATTATT-AT-AGATAG
1 TGTTTA---A-TATTGATCA-ATAG
2696 ATGTTTAATATCTGATCAATAG
1 -TGTTTAATAT-TGATCAATAG
2718 TGTTTA
1 TGTTTA
2724 CTTATTATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 17
0.71 0.00 0.29
Matches are distributed among these distances:
20 9 0.21
21 8 0.19
22 7 0.17
23 8 0.19
24 10 0.24
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (20 bp):
TGTTTAATATTGATCAATAG
Found at i:2706 original size:44 final size:46
Alignment explanation
Indices: 2641--2733 Score: 163
Period size: 45 Copynumber: 2.0 Consensus size: 46
2631 GCTAAATAAG
2641 TATAGATAGAGATGTTTAATAT-TGATCAATAGTGTTTACTTATTAT
1 TATAGATA-AGATGTTTAATATCTGATCAATAGTGTTTACTTATTAT
2687 TATAGAT-AGATGTTTAATATCTGATCAATAGTGTTTACTTATTAT
1 TATAGATAAGATGTTTAATATCTGATCAATAGTGTTTACTTATTAT
2732 TA
1 TA
2734 ACATTCGGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
44 13 0.28
45 26 0.57
46 7 0.15
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.46
Consensus pattern (46 bp):
TATAGATAAGATGTTTAATATCTGATCAATAGTGTTTACTTATTAT
Found at i:2751 original size:45 final size:45
Alignment explanation
Indices: 2658--2752 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 45
2648 AGAGATGTTT
* ** *
2658 AATAT-TGATCAATAGTGTTTACTTATTATTATAGATAGATGTTT
1 AATATCTGATCAATAGTGTTTACTTATTATTATACATAGATAATG
* *
2702 AATATCTGATCAATAGTGTTTACTTATTATTA-ACATTCGGTAATG
1 AATATCTGATCAATAGTGTTTACTTATTATTATACA-TAGATAATG
2747 AATATC
1 AATATC
2753 CATCTCATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
44 7 0.16
45 36 0.84
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (45 bp):
AATATCTGATCAATAGTGTTTACTTATTATTATACATAGATAATG
Found at i:5313 original size:39 final size:40
Alignment explanation
Indices: 5239--5815 Score: 861
Period size: 39 Copynumber: 14.9 Consensus size: 40
5229 GAATACACAT
*
5239 CACCAGCATGAATGCTCTTC-GGAC-TAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
5277 CACCAGCACGAATGCTCTTCGGGACTTAACCC-GATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
5316 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
5356 CA-CAGCACGAATGCTCTT-TGGACTTAG-CC-GATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
5392 CACACAGCACG-ATGCTCTTC-GGACTTAGCCC-GATATAA
1 CAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
5430 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
5469 CTCTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
5508 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
5547 -TCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
5586 C-TCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
5625 C-TCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
5663 CA-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
5702 CA-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
5741 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
5781 CA-TAGCACGAATGCTCCTCGGGACTTAGCTCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
5816 GGGCTACTTA
Statistics
Matches: 507, Mismatches: 18, Indels: 27
0.92 0.03 0.05
Matches are distributed among these distances:
36 9 0.02
37 25 0.05
38 120 0.24
39 302 0.60
40 51 0.10
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:5334 original size:77 final size:80
Alignment explanation
Indices: 5241--5815 Score: 868
Period size: 77 Copynumber: 7.4 Consensus size: 80
5231 ATACACATCA
*
5241 CCAGCATGAATGCTCTTC-GGAC-TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
*
5304 AACCC-GATATAACT
66 AGCCCGGATATAACT
* *
5318 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACA-CAGCACGAATGCTCTT-TGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
*
5381 AG-CC-GATATAACA
66 AGCCCGGATATAACT
5394 CACAGCACG-ATGCTCTTC-GGACTTAGCCC-GATATAACACCAGCACGAATGCTCTTC-GGACT
1 C-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACT
5455 TAGCCCGGATATAACT
65 TAGCCCGGATATAACT
*
5471 CTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTC-GGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
5534 AGCCCGGATATAA-T
66 AGCCCGGATATAACT
*
5548 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC-TCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
5612 AGCCCGGATATAACT
66 AGCCCGGATATAACT
5627 -CAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-ACA-CAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
5689 AGCCCGGATATAAC-
66 AGCCCGGATATAACT
* * *
5703 ACAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
5768 AGCCCGGATAT-A-T
66 AGCCCGGATATAACT
* * *
5781 CATAGCACGAATGCTCCTCGGGACTTAGCTCGGAT
1 C-CAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
5816 GGGCTACTTA
Statistics
Matches: 464, Mismatches: 16, Indels: 34
0.90 0.03 0.07
Matches are distributed among these distances:
74 9 0.02
75 34 0.07
76 28 0.06
77 170 0.37
78 142 0.31
79 81 0.17
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTT
AGCCCGGATATAACT
Found at i:5560 original size:116 final size:117
Alignment explanation
Indices: 5242--5815 Score: 868
Period size: 116 Copynumber: 4.9 Consensus size: 117
5232 TACACATCAC
* *
5242 CAGCATGAATGCTCTTCGGAC-TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAA
1 CAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAG
*
5306 CCC-GATATAACTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACA
66 CCCGGATATAA-TCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
5358 CAGCACGAATGCTCTTTGGACTTAG-CC-GATATAACACACAGCACG-ATGCTCTTC-GGACTTA
1 CAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACAC-CAGCACGAATGCTCTTCGGGACTTA
* *
5419 GCCC-GATATAACACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACT
65 GCCCGGATATAA-TCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
5471 CTAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTC-GGACTTA
1 C-AGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTA
*
5535 GCCCGGATATAATCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
65 GCCCGGATATAATCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
5588 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC-TCAGCACGAATGCTCTTCGGGACTTA
1 CAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTA
5652 GCCCGGATAT-A-CACAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
65 GCCCGGATATAATC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* *
5704 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTA
1 CAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTA
* * *
5769 GCCCGGATAT-ATCATAGCACGAATGCTCCTCGGGACTTAGCTCGGAT
65 GCCCGGATATAATC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
5816 GGGCTACTTA
Statistics
Matches: 429, Mismatches: 16, Indels: 24
0.91 0.03 0.05
Matches are distributed among these distances:
113 20 0.05
114 59 0.14
115 29 0.07
116 185 0.43
117 104 0.24
118 32 0.07
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (117 bp):
CAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAG
CCCGGATATAATCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:5913 original size:38 final size:38
Alignment explanation
Indices: 5821--5917 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 38
5811 CGGATGGGCT
5821 ACTTAGCCCGGATATATCACTAGCACGAATGCTCTCGGG
1 ACTTAGCCCGGATATATCACTA-CACGAATGCTCTCGGG
5860 ACTTAGCCCGAGATATATCACTA-ACGAATGCTCTTCGGG
1 ACTTAGCCCG-GATATATCACTACACGAATGCTC-TCGGG
5899 ACTTAGCCCGGATATATCA
1 ACTTAGCCCGGATATATCA
5918 ACTCTCAATT
Statistics
Matches: 56, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
38 19 0.34
39 25 0.45
40 12 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (38 bp):
ACTTAGCCCGGATATATCACTACACGAATGCTCTCGGG
Found at i:7350 original size:27 final size:27
Alignment explanation
Indices: 7320--7375 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
7310 TTCATTTACC
7320 TCATCAAATATCTAATAAAACACACCT
1 TCATCAAATATCTAATAAAACACACCT
7347 TCATCAAATATCTAATAAAACACACCT
1 TCATCAAATATCTAATAAAACACACCT
7374 TC
1 TC
7376 CGCCGTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (27 bp):
TCATCAAATATCTAATAAAACACACCT
Found at i:7462 original size:46 final size:46
Alignment explanation
Indices: 7409--7499 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
7399 TATATATACA
* * *
7409 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * * *
7455 CATCTCATACGCATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
7500 ATACATCTAC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:7914 original size:47 final size:47
Alignment explanation
Indices: 7511--7912 Score: 561
Period size: 47 Copynumber: 8.6 Consensus size: 47
7501 TACATCTACG
* **
7511 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * * *
7558 TTTATAACATTGGTCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
7605 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
7652 TTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * * *
7699 TTCATCACATTGGCCATTCGATCTTATCACATATATACATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
7746 TTCATCACGTTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
7793 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * * *
7840 TTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
7887 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
7913 GCTCATGTAT
Statistics
Matches: 320, Mismatches: 35, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 320 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Done.