genome.fa.s1207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2103
Parameters: 2 7 7 80 10 50 1000
Length:  40011

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4768--5017	42	5.9	42	79	10	269	17	28	34	20	1.95
5226--5304	24	3.3	24	85	5	106	6	37	35	20	1.78
5322--6348	43	24.3	43	78	7	776	16	32	33	17	1.93
5309--6318	85	12.0	86	82	4	985	16	32	33	17	1.93
5322--6348	256	4.1	253	84	5	1047	16	32	33	17	1.93
5380--6318	299	3.2	299	87	4	1200	16	32	33	17	1.93
6247--6325	34	2.3	34	93	2	131	7	35	37	18	1.80
6324--6372	24	2.0	24	92	0	80	10	22	48	18	1.77
6359--6451	42	2.2	44	90	3	145	12	27	39	19	1.88
14352--14642	42	6.9	42	80	9	310	17	28	34	19	1.95
14851--14929	24	3.3	24	85	5	106	6	37	35	20	1.78
14947--15972	43	24.3	43	78	6	781	16	32	33	17	1.93
14934--15943	85	12.0	86	82	4	994	16	32	33	17	1.93
14947--15972	256	4.1	253	84	5	1052	16	32	33	17	1.93
15005--15943	299	3.2	299	87	4	1209	16	32	33	17	1.93
15872--15950	34	2.3	34	93	2	131	7	35	37	18	1.80
15949--15997	25	2.0	25	91	0	80	12	22	46	18	1.82
15985--16077	42	2.2	44	90	3	145	12	27	39	19	1.88
23980--24271	42	6.9	42	80	9	319	17	28	34	19	1.95
24480--24558	24	3.3	24	85	5	106	6	37	35	20	1.78
24576--25720	43	27.2	43	76	8	789	16	31	34	17	1.92
24563--25571	43	23.9	43	78	6	985	16	32	33	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24563--25571	85	12.0	86	82	4	985	16	32	33	17	1.93
24563--25536	128	7.6	128	78	5	963	16	32	33	17	1.93
24634--25366	298	2.5	299	92	2	1192	16	32	33	17	1.93
25500--25578	34	2.3	34	93	2	131	7	35	37	18	1.80
25565--25608	21	2.1	21	100	0	88	11	27	36	25	1.90
33622--33913	42	6.9	42	80	9	319	17	28	34	19	1.95
34122--34200	24	3.3	24	85	5	106	6	37	35	20	1.78
34205--35216	43	23.9	43	77	6	944	16	32	33	18	1.93
34205--35216	85	12.0	86	81	4	944	16	32	33	18	1.93
34205--35181	128	7.6	129	77	5	896	16	32	33	18	1.93
34205--35219	256	4.0	254	82	6	996	16	32	33	18	1.93
34276--35011	298	2.5	299	91	2	1160	16	32	32	18	1.93
35145--35223	34	2.3	34	93	2	131	7	35	37	18	1.80
35222--35270	25	2.0	25	91	0	80	12	22	46	18	1.82
35258--35350	42	2.2	44	90	3	145	12	27	39	19	1.88
37702--37761	31	1.9	31	100	0	120	25	16	26	31	1.96

Tables:   1

The End!