Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1346
Parameters: 2 7 7 80 10 50 1000
Length:  40976

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12764--12812
10
4.9
10
78
9
55
26
16
30
26
1.97
12766--12812
20
2.3
20
89
7
69
25
17
31
25
1.97
13293--13340
9
5.1
9
80
9
51
18
29
16
35
1.93
13304--13341
20
1.9
20
94
0
67
21
28
13
36
1.91
13729--13754
13
2.0
13
100
0
52
46
0
7
46
1.31
15458--15561
30
3.4
29
71
7
91
30
15
25
28
1.96
17739--17769
12
2.6
12
100
0
62
25
16
12
45
1.83
17830--17879
6
8.2
6
81
16
50
2
20
2
76
0.99
17819--17889
37
1.9
37
86
11
101
2
18
2
76
1.04
17815--17875
16
3.8
16
77
14
63
3
19
1
75
1.03
20574--20670
30
3.2
30
75
2
106
28
15
26
28
1.96
21235--21283
10
4.9
10
83
16
66
28
14
30
26
1.95
21237--21283
20
2.3
20
100
0
94
27
14
31
25
1.95
27034--27073
18
2.2
18
86
4
53
12
27
0
60
1.33
28121--28170
13
3.8
13
89
10
75
22
10
0
68
1.19
28122--28173
26
2.0
26
96
0
95
25
11
0
63
1.28
28212--28254
12
3.5
12
84
6
59
13
2
6
76
1.08
28211--28254
13
3.5
13
81
6
54
13
2
6
77
1.07
30756--30820
20
3.3
19
73
16
51
38
16
21
23
1.93
32590--32652
33
1.9
33
84
12
85
12
26
6
53
1.62
32650--32705
21
2.7
21
72
5
51
8
17
1
71
1.21
32649--32774
28
4.6
26
68
20
78
8
18
3
69
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32649--32705
14
4.1
14
75
16
57
8
17
1
71
1.19
32712--32762
18
2.9
18
82
2
68
5
15
5
72
1.24
32667--32762
6
15.7
6
68
6
59
7
18
3
70
1.24
34364--34425
10
5.9
10
74
10
52
33
32
3
30
1.74
34364--34426
21
3.0
21
88
2
90
33
33
3
30
1.74
35444--35501
20
2.9
20
74
5
55
8
8
5
77
1.11
35454--35487
11
3.3
11
88
12
54
14
0
8
76
1.01
37101--37165
20
3.3
19
73
16
51
38
16
21
23
1.93
39112--39200
28
2.9
30
83
8
101
87
6
1
4
0.70
39122--39200
1
79.0
1
82
0
95
91
5
1
2
0.55
39122--39202
42
1.9
43
89
2
128
90
4
1
3
0.60
39239--39288
22
2.3
23
83
13
61
78
6
10
6
1.10

Tables:   1

The End!