Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3477
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31755
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Found at i:7582 original size:19 final size:19
Alignment explanation
Indices: 7558--7595 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7548 AAAAGGGAAA
* *
7558 AAACGCTGCTGCTACCAGG
1 AAACGCTACCGCTACCAGG
7577 AAACGCTACCGCTACCAGG
1 AAACGCTACCGCTACCAGG
7596 TGACATTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.34, G:0.24, T:0.13
Consensus pattern (19 bp):
AAACGCTACCGCTACCAGG
Found at i:7810 original size:42 final size:41
Alignment explanation
Indices: 7681--7965 Score: 189
Period size: 42 Copynumber: 6.7 Consensus size: 41
7671 TTGGTGCTCA
* * *
7681 AGGCTCCCGCTCATCCATGCACCAAGATGCCGATGGTGCT-CG
1 AGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGT-CTCCG
* ** * ** *
7723 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCG
1 AGGCTCCCGCAC-ATCAAGCACCAAGG-TGCCGATGGTCTCCG
*
7766 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTCTCCG
1 AGGCTCCCGCACATCA-AGCACCAAGGTGCCGATGGTCTCCG
* * ** * * * *
7808 AGGCTCCCACA-ACCAAGGGCCTTAGTTTGCCGATAGTGTCCG
1 AGGCTCCCGCACATCAAGCACC-AAG-GTGCCGATGGTCTCCG
* *
7850 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCT-CG
1 AGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGT-CTCCG
* * * *
7892 AGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGTCTG
1 AGGCTCCCGCACAT-CAAGCACCAAGG-TGCCGATGGTCTCCG
* *
7935 AGGCTCCCACACATCCGAGCCACCAAGGTGC
1 AGGCTCCCGCACAT-CAAG-CACCAAGGTGC
7966 TGGAGGCTCT
Statistics
Matches: 186, Mismatches: 45, Indels: 23
0.73 0.18 0.09
Matches are distributed among these distances:
40 4 0.02
41 5 0.03
42 102 0.55
43 63 0.34
44 12 0.06
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.18
Consensus pattern (41 bp):
AGGCTCCCGCACATCAAGCACCAAGGTGCCGATGGTCTCCG
Found at i:7860 original size:84 final size:83
Alignment explanation
Indices: 7681--7899 Score: 316
Period size: 84 Copynumber: 2.6 Consensus size: 83
7671 TTGGTGCTCA
* * *
7681 AGGCTCCCGCTCATCCATGCACCAAGATGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
1 AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCT-CC-CACAACCAAGGGCC
7746 TAGGTTGCCGACAGTGTCCG
64 TAGGTTGCCGACAGTGTCCG
*
7766 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTCCCACAACCAAGGGCC
1 AGGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCACAACCAAGGGCC
* *
7829 TTAGTTTGCCGATAGTGTCCG
64 -TAGGTTGCCGACAGTGTCCG
*
7850 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
1 AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
7900 GCACATCCAA
Statistics
Matches: 121, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
83 13 0.11
84 66 0.55
85 42 0.35
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (83 bp):
AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCACAACCAAGGGCCTA
GGTTGCCGACAGTGTCCG
Found at i:15904 original size:43 final size:41
Alignment explanation
Indices: 15833--16005 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 41
15823 CTTCTTTAGC
* *
15833 CCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCGCACAT-CGAGCCACCAAGGTGCCGAT-GGTGCCCGAGGCT
* * * *
15876 ACCGCACATCGAAG-CACCAAGTTACCGATGGTGTCTGAGGCT
1 -CCGCACATCG-AGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * *
15918 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 -CCGCACAT-CGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
15961 CTCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
1 C-CGCACAT-CGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
16004 CC
1 CC
16006 CGTACAACCA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
42 22 0.21
43 75 0.70
44 10 0.09
ACGTcount: A:0.19, C:0.38, G:0.29, T:0.14
Consensus pattern (41 bp):
CCGCACATCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:15980 original size:86 final size:86
Alignment explanation
Indices: 15832--16007 Score: 223
Period size: 86 Copynumber: 2.0 Consensus size: 86
15822 TCTTCTTTAG
* *
15832 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTACCGCACATCGAAGCACCAAG
1 CCCGCACATCCCAGCCACCAAGGTGCCGATGGCTGCCCGAGGCTACCGCACATCGAAGCACCAAG
* * *
15897 TTACCGATGGTGTCTGAGGCT
66 GTACCGATGGTGCCCGAGGCT
* * *
15918 CCCGCACCTCCTAGCCACCGAGGTGCCGAT-GCTGCCCGAGGCT-CTCGCACATCCG-AGCCACC
1 CCCGCACATCCCAGCCACCAAGGTGCCGATGGCTGCCCGAGGCTAC-CGCACAT-CGAAG-CACC
*
15980 AAGGTGCCGATGGTGCCCGAGGCT
63 AAGGTACCGATGGTGCCCGAGGCT
16004 CCCG
1 CCCG
16008 TACAACCAAG
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
84 1 0.01
85 21 0.27
86 56 0.72
ACGTcount: A:0.19, C:0.38, G:0.29, T:0.14
Consensus pattern (86 bp):
CCCGCACATCCCAGCCACCAAGGTGCCGATGGCTGCCCGAGGCTACCGCACATCGAAGCACCAAG
GTACCGATGGTGCCCGAGGCT
Found at i:16163 original size:86 final size:85
Alignment explanation
Indices: 15986--16238 Score: 222
Period size: 85 Copynumber: 3.0 Consensus size: 85
15976 CACCAAGGTG
* * * *
15986 CCGATGGTGCCCGAGGCTCCCGTACAACCAAGGGTCGAGGTATCGATGGTGGCCGAGGCCCCCGC
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGTCGAGGTACCGATAGTGCCCGAGGCCCCCGC
*** *
16051 ACGACCAAGGGCCTATTTTG
66 ACGACCAAGGGCCTAGGCTA
* * * * *
16071 CTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CTTAGTTTACCGATAGTGCCCGA-GCCTCT
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGTC-GAG-GTACCGATAGTGCCCGAGGCC-CC
16134 CGCACGACCAAGGGCCTAGGCTA
63 CGCACGACCAAGGGCCTAGGCTA
* * * * * *** * * * * * *
16157 CCGATGGTGCGCGAGGTTCTCGCACATCTAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGT
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGTCGAGGTACCGATAGTGCCCGAGGCCCCCGC
16222 ACGACCAAGGGCCTAGG
66 ACGACCAAGGGCCTAGG
16239 TTGCCAACAG
Statistics
Matches: 133, Mismatches: 30, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
84 1 0.01
85 69 0.52
86 62 0.47
87 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (85 bp):
CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGTCGAGGTACCGATAGTGCCCGAGGCCCCCGC
ACGACCAAGGGCCTAGGCTA
Found at i:16178 original size:43 final size:42
Alignment explanation
Indices: 15852--16445 Score: 246
Period size: 43 Copynumber: 14.0 Consensus size: 42
15842 CCAGGCACCA
* * * ** *
15852 AGGTGCCGATGGGTGCCCGAGGCTACCGCAC-ATCGAAGCACCA
1 AGGTACCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* * * ** * ** *
15895 AGTTACCGATGGTGTCTGAGGCTCCCGCACCTCCTAGCCACCG
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCT
* * * * ** *
15938 AGGTGCCGATGCTGCCCGAGGCTCTCGCAC-ATCCGAGCCACCA
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCT
* * * * *
15981 AGGTGCCGATGGTGCCCGAGGCTCCCGTACAACCAAGGGTCG
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * *
16023 AGGTATCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCT
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * * *
16065 ATTTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
1 A-GGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * *
16108 AGTTTACCGATAGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 AG-GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * ** *
16151 AGGCTACCGATGGTGCGCGAGGTTCTCGCAC-ATCTAAGCACCA
1 AGG-TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* * *
16194 AGGTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCT
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * ** * * * *** *
16236 AGGTTGCCAACAGTGTCCGAGGCTCTCGCAC-ATCATAGCATCG
1 AGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCT
* * * ** *
16279 AGGTGCCGATGGCGCCCGAGGCTCCCGCAC-ATCGAAGCACCG
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* * * * * * * *
16321 AGTTGCCGATGGCGCCCAAGGCTCCTGCATGACTAAGGGCTT
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * * * * * ** *
16363 AGTTTTCTGATGGTGTCCGGGGCTCCTGTAC-ATCCTAGCACCG
1 AG-GTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
*
16406 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
1 AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
16446 TTATGCTACC
Statistics
Matches: 414, Mismatches: 121, Indels: 33
0.73 0.21 0.06
Matches are distributed among these distances:
42 179 0.43
43 234 0.57
44 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (42 bp):
AGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:16237 original size:85 final size:85
Alignment explanation
Indices: 16114--16308 Score: 232
Period size: 85 Copynumber: 2.3 Consensus size: 85
16104 GCTTAGTTTA
* * * * ** *
16114 CCGATAGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGCTACCGATGGTG-CGCGAGGTTCTC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGCTACCAACAGTGTC-CGAGGCTCTC
16178 GCACATC-TAAGCACCAAGGTG
65 GCACATCAT-AGCACCAAGGTG
* * * *
16199 CCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCAACAGTGTCCGAGGCTCTCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGCTACCAACAGTGTCCGAGGCTCTCG
* *
16264 CACATCATAGCATCGAGGTG
66 CACATCATAGCACCAAGGTG
*
16284 CCGATGGCGCCCGAGGCTCCCGCAC
1 CCGATGGTGCCCGAGGCTCCCGCAC
16309 ATCGAAGCAC
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
85 90 0.98
86 2 0.02
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.16
Consensus pattern (85 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGCTACCAACAGTGTCCGAGGCTCTCG
CACATCATAGCACCAAGGTG
Found at i:16301 original size:42 final size:42
Alignment explanation
Indices: 16157--16345 Score: 139
Period size: 42 Copynumber: 4.5 Consensus size: 42
16147 GCCTAGGCTA
* * * * * *
16157 CCGATGGTGCGCGAGGTTCTCGCACATCTAAGCACCAAGGTG
1 CCGATGGCGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTG
* * * * ** *
16199 CCGATGGTGCTCGAGGCTCCCGTACGA-CCAAGGGCCTAGGTTG
1 CCGATGGCGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGG-TG
* ** * * * *
16242 CCAACAGTGTCCGAGGCTCTCGCACATC-ATAGCATCGAGGTG
1 CCGATGGCGCCCGAGGCTCCCGCACATCGA-AGCACCGAGGTG
*
16284 CCGATGGCGCCCGAGGCTCCCGCACATCGAAGCACCGAGTTG
1 CCGATGGCGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTG
*
16326 CCGATGGCGCCCAAGGCTCC
1 CCGATGGCGCCCGAGGCTCC
16346 TGCATGACTA
Statistics
Matches: 114, Mismatches: 28, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
42 85 0.75
43 29 0.25
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (42 bp):
CCGATGGCGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTG
Found at i:16343 original size:127 final size:127
Alignment explanation
Indices: 16068--16435 Score: 389
Period size: 127 Copynumber: 2.9 Consensus size: 127
16058 AGGGCCTATT
* * *
16068 TTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATAGTGCCCGAGCCTC
1 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATAGTGTCCGAGGCTC
* ** * * * * * *
16133 TCGCACGACCA-AGGGCCTAGGCTACCGATGGTGCGCGAGGTTCTCGCACATCTAAGCACCAAG
66 TCGCAC-ATCATAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCAAG
* * * * * * * *
16196 GTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCAACAGTGTCCGAGGCTC
1 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATAGTGTCCGAGGCTC
* * *
16261 TCGCACATCATAGCATCGAGGTGCCGATGGCGCCCGAGGCTCCCGCACATCGAAGCACCGAG
66 TCGCACATCATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCAAG
* * * * * * * * *
16323 TTGCCGATGGCGCCCAAGGCTCCTGCATGACTAAGGGCTTAGTTTTCTGATGGTGTCCGGGGCTC
1 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATAGTGTCCGAGGCTC
* *
16388 -CTGTACATCCTAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
66 TC-GCACATCATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
16436 GACCAAGGGC
Statistics
Matches: 195, Mismatches: 43, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
126 1 0.01
127 128 0.66
128 66 0.34
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (127 bp):
TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATAGTGTCCGAGGCTC
TCGCACATCATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCAAG
Found at i:16489 original size:24 final size:24
Alignment explanation
Indices: 16462--16523 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
16452 TACCGGAACA
16462 GTTCGCCGGAGCACCGACGGGACG
1 GTTCGCCGGAGCACCGACGGGACG
* * *
16486 GTTCACCGGATCACCGCCGGGACG
1 GTTCGCCGGAGCACCGACGGGACG
*
16510 GATCGCCGGAGCAC
1 GTTCGCCGGAGCAC
16524 TGCTGGGAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.18, C:0.35, G:0.37, T:0.10
Consensus pattern (24 bp):
GTTCGCCGGAGCACCGACGGGACG
Found at i:20893 original size:13 final size:13
Alignment explanation
Indices: 20875--20899 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20865 AAAGAAAAAA
20875 TGCTACCAGGTGC
1 TGCTACCAGGTGC
20888 TGCTACCAGGTG
1 TGCTACCAGGTG
20900 ACATTCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (13 bp):
TGCTACCAGGTGC
Found at i:21030 original size:42 final size:42
Alignment explanation
Indices: 20978--21308 Score: 271
Period size: 42 Copynumber: 7.8 Consensus size: 42
20968 TAGCTTTGGA
* * * *
20978 GCTCAAGGCTCCCGCTCATCCATGCACCAAGGTACCGATGGT
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT
*
21020 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGCGCCGATGGT
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT
** * **
21062 GCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGT
1 GCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGT
* * **
21105 G-TCCGAGGCTCCTGCACAT-CATAGTACTGAGGTGCCGATGGT
1 GCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGT
* ** * *
21147 -CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGATGGT
1 GCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGATGGT
* * * * *
21189 G-TCCGATGCTCCTGCACATCCATGCACCAAAGTGCCGATGAT
1 GCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT
* *
21231 GCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGT
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGT
* *
21274 G-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTG
1 GCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTG
21309 ATGGAGGCTC
Statistics
Matches: 229, Mismatches: 46, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
41 9 0.04
42 145 0.63
43 68 0.30
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT
Found at i:25027 original size:22 final size:22
Alignment explanation
Indices: 24969--25027 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
24959 GAATGGTATC
24969 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
24991 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
25014 TACATATCAAATCT
1 TACAAATCAAATCT
25028 TTGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:30170 original size:22 final size:22
Alignment explanation
Indices: 30112--30170 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
30102 GAATGGTATC
30112 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
30134 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
30157 TACATATCAAATCT
1 TACAAATCAAATCT
30171 ATGATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Done.