Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2001
Parameters: 2 7 7 80 10 50 1000
Length:  49441

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6876--6927
27
1.9
27
92
0
86
28
32
23
15
1.95
6886--7034
71
2.1
70
90
4
230
30
29
16
22
1.96
6954--7176
104
2.2
103
92
2
367
31
31
18
17
1.95
7505--7568
30
2.2
29
81
10
76
29
28
6
35
1.82
7512--7568
30
1.9
30
85
3
80
29
24
7
38
1.82
23584--23672
27
3.3
27
79
3
72
35
22
8
32
1.85
23598--23790
54
3.6
54
88
0
251
29
23
8
38
1.85
23628--23790
27
6.0
27
90
0
254
27
23
9
39
1.85
23794--23951
27
5.9
27
84
3
185
43
21
6
28
1.78
23800--23951
81
1.9
80
86
6
218
44
21
6
27
1.77
23936--24046
27
4.1
27
77
1
107
36
18
19
25
1.94
24256--24350
25
3.8
25
88
0
145
25
26
23
25
2.00
26744--26807
27
2.4
26
79
7
74
39
23
7
29
1.83
26788--26912
27
4.6
27
87
0
178
27
21
9
41
1.84
26893--27058
27
6.2
27
82
3
156
39
21
9
30
1.84
26812--26941
54
2.4
54
80
3
136
30
21
9
39
1.85
26745--26956
81
2.6
81
76
3
212
32
22
8
35
1.85
26893--27058
81
2.1
80
82
7
194
39
21
9
30
1.84
27046--27236
27
7.1
27
85
0
256
35
17
20
26
1.95
27046--27238
81
2.4
82
88
1
282
34
18
20
26
1.95
27443--27534
25
3.7
25
91
2
141
25
25
23
26
2.00
27471--27548
25
3.1
25
80
10
79
26
21
24
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27443--27562
50
2.4
51
81
13
126
26
22
23
27
1.99
29396--29463
29
2.3
29
85
5
93
27
30
13
27
1.94
29565--29643
29
2.7
30
82
13
110
29
30
15
25
1.96
37388--37454
29
2.3
29
82
7
84
26
31
13
28
1.94
37560--37633
29
2.5
31
81
16
95
29
28
14
27
1.95
39181--39262
31
2.7
30
83
14
105
24
14
34
26
1.94

Tables:   1

The End!