genome.fa.s1239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2264
Parameters: 2 7 7 80 10 50 1000
Length:  49580

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543--723	40	4.7	40	80	8	196	24	29	22	24	1.99
577--721	78	1.9	76	83	8	186	22	31	21	24	1.98
8672--8863	40	4.8	40	78	6	185	25	28	21	25	1.99
8646--8860	79	2.7	79	78	9	206	25	27	20	26	1.99
13504--13570	25	2.8	24	86	4	89	32	2	0	64	1.09
13481--13635	35	4.4	34	69	14	91	30	4	2	61	1.29
15022--15199	27	6.6	27	82	3	187	29	27	15	27	1.96
15043--15198	82	1.9	81	85	3	215	28	27	16	27	1.97
20906--20942	15	2.5	16	87	12	53	21	24	10	43	1.84
25508--25606	28	3.5	28	88	1	135	29	13	25	32	1.93
32200--32760	206	2.7	206	91	1	892	30	17	21	29	1.96
32956--32998	4	11.0	4	90	9	63	76	2	0	20	0.89
34355--34412	26	2.4	24	77	8	64	43	5	0	51	1.24
34448--34502	11	4.9	11	81	18	51	36	0	0	63	0.95
34460--34527	25	2.8	25	88	2	93	30	1	1	66	1.10
34463--34585	14	9.2	13	69	22	53	29	3	4	62	1.32
34828--34863	7	5.3	7	90	3	56	27	0	11	61	1.30
34828--34870	14	3.1	14	86	3	61	32	0	9	58	1.30
34828--34870	21	2.1	20	82	4	50	32	0	9	58	1.30
34858--34899	12	3.5	12	78	12	50	45	4	0	50	1.23
39227--39931	27	26.1	27	83	0	728	29	21	7	40	1.82
39227--39928	108	6.5	107	88	2	802	29	22	7	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39944--40103	27	6.0	27	85	1	205	35	18	21	23	1.96
39934--40099	53	3.1	54	83	5	212	36	17	21	24	1.94
39944--40101	80	2.0	81	84	3	212	36	17	22	24	1.95
40302--40384	27	3.1	26	87	5	112	20	22	20	36	1.95
40697--40768	27	2.7	26	81	10	83	18	25	22	34	1.96
40883--40984	6	16.8	6	77	17	95	21	17	10	50	1.77
40883--40984	30	3.4	30	89	6	152	21	17	10	50	1.77
42985--43628	26	24.9	27	76	13	497	29	22	7	40	1.81
43638--43821	27	7.2	27	83	9	192	35	18	19	26	1.94
43646--43794	26	6.0	24	80	12	117	36	18	18	26	1.94
44018--44098	25	3.1	26	87	5	110	19	22	22	35	1.96
45320--45421	6	16.8	6	74	17	86	50	12	14	22	1.77
45320--45421	30	3.4	29	86	6	132	50	12	14	22	1.77
45542--45613	26	2.7	27	79	14	78	37	16	26	19	1.93
45779--45836	22	2.7	21	81	2	62	32	22	24	20	1.98
45924--46005	26	3.0	27	80	8	96	37	18	25	18	1.93
46202--46386	27	7.0	27	81	7	173	26	20	17	35	1.95
46233--46390	28	6.0	26	81	10	155	26	19	17	36	1.94
46221--46392	77	2.2	80	81	11	194	26	19	18	36	1.94
46402--46687	27	10.4	27	69	18	164	43	7	21	27	1.80
46386--46698	55	5.7	54	71	17	191	42	8	20	28	1.81
46594--46704	57	1.9	58	85	8	156	44	6	19	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46755--46911	27	5.6	27	76	12	165	38	8	22	30	1.83
46755--46916	54	2.9	53	78	15	191	38	8	22	30	1.83
49286--49353	28	2.5	28	77	15	70	38	20	23	17	1.93

Tables:   1

The End!