genome.fa.s127.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1136
Parameters: 2 7 7 80 10 50 1000
Length:  43028

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1332--1438	26	4.2	26	94	3	166	36	23	5	34	1.78
5338--5448	27	4.1	26	85	5	132	36	21	23	18	1.94
5338--5448	54	2.1	54	86	3	152	36	21	23	18	1.94
7065--7148	26	3.2	26	94	0	150	36	23	4	34	1.76
17267--17350	44	1.9	44	95	0	150	29	14	27	28	1.95
17343--17968	206	3.0	206	92	0	1020	34	18	19	27	1.95
19630--19687	25	2.5	23	81	13	57	36	1	1	60	1.17
19645--19687	22	2.0	22	82	8	54	37	0	2	60	1.10
19651--19845	17	11.0	17	67	20	64	30	5	1	62	1.27
19702--19762	16	3.9	15	78	10	61	31	4	1	62	1.26
19658--19828	94	1.8	92	81	9	213	30	5	1	61	1.28
20373--20445	30	2.4	30	84	4	94	21	8	10	58	1.58
21304--21360	27	2.2	27	81	9	66	28	5	5	61	1.39
21398--21449	27	2.0	26	81	11	61	32	1	1	63	1.16
21338--21477	7	17.8	8	67	26	61	35	4	0	60	1.22
21590--21627	14	2.7	14	95	0	67	34	7	2	55	1.43
21591--21663	14	4.8	16	76	17	57	32	5	4	57	1.41
23205--23258	24	2.2	25	78	15	60	59	7	5	27	1.47
24442--25016	87	6.5	86	78	12	349	37	18	16	28	1.92
24515--24996	87	5.4	88	79	9	380	35	18	16	29	1.93
24820--24852	14	2.4	14	100	0	66	66	6	9	18	1.40
25113--25335	76	2.9	76	82	9	245	34	18	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25248--25426	92	2.0	91	87	1	259	34	17	20	27	1.95
25340--25505	77	2.1	78	86	2	226	31	18	20	28	1.96
24963--25505	248	2.2	238	80	9	580	33	19	18	28	1.95
25178--25818	168	3.8	167	92	2	869	31	19	19	29	1.97
25406--25595	93	2.1	91	83	5	231	33	18	21	26	1.97
25509--25881	76	4.7	76	71	16	258	30	22	19	28	1.98
25668--25898	76	3.1	74	82	6	279	32	21	17	28	1.96
28102--28274	93	1.9	93	90	2	276	28	29	20	21	1.98
34565--34608	18	2.4	18	96	3	79	13	25	11	50	1.75

Tables:   1

The End!