genome.fa.s1274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3644
Parameters: 2 7 7 80 10 50 1000
Length:  30137

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6378--6437	21	2.8	21	75	9	68	0	21	75	3	0.95
6454--6491	16	2.4	16	86	8	51	0	26	68	5	1.11
7185--7287	42	2.4	43	80	16	117	1	59	26	12	1.44
7264--7311	24	2.0	25	87	4	71	2	62	22	12	1.40
7354--8328	44	22.9	42	69	13	466	2	48	32	16	1.58
7657--7948	82	3.4	84	78	12	242	2	47	33	16	1.59
7397--8190	84	9.3	84	72	14	354	2	48	32	16	1.59
8027--8322	84	3.5	84	80	12	322	1	51	32	14	1.53
8334--8411	23	3.3	24	85	7	97	0	55	38	6	1.26
8607--8872	38	6.8	39	74	20	209	1	49	30	19	1.56
8617--8846	79	2.9	77	73	20	201	1	48	30	20	1.57
8788--8876	42	2.1	41	80	13	103	1	52	30	15	1.50
10529--10806	40	6.9	38	77	15	244	17	30	51	0	1.46
10529--10806	80	3.5	79	77	14	286	17	30	51	0	1.46
10529--10841	160	1.9	160	82	11	390	17	29	52	0	1.45
11007--11076	25	2.9	24	87	10	99	7	41	51	0	1.29
11097--12219	42	27.1	42	76	11	760	16	32	51	0	1.44
11154--11880	293	2.5	294	90	5	1114	16	32	50	0	1.46
12013--12082	36	1.9	36	88	5	106	8	37	54	0	1.31
12117--12219	43	2.4	42	91	1	161	13	26	60	0	1.34
12046--12212	76	2.2	73	79	12	185	13	29	57	0	1.36
12819--12851	6	5.7	6	92	7	59	0	15	84	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16332--16376	21	2.0	21	91	8	72	2	40	57	0	1.11
16337--16393	21	2.8	20	82	12	62	3	40	56	0	1.17
17721--17760	18	2.2	19	86	4	55	7	37	55	0	1.29
19955--20237	41	6.9	40	80	11	283	18	29	52	0	1.45
19972--20202	122	1.9	122	87	5	342	18	29	52	0	1.46
19955--20237	81	3.5	80	78	13	310	18	29	52	0	1.45
20437--20514	24	3.3	24	92	1	122	6	38	55	0	1.26
20520--21483	42	22.9	43	77	8	858	17	32	50	0	1.46
20590--21316	294	2.5	296	92	2	1205	16	32	50	0	1.46
21448--21523	33	2.3	33	93	2	125	7	36	55	0	1.29
21458--21599	33	4.3	33	71	21	100	12	29	57	0	1.35
21522--21570	25	2.0	25	95	0	89	12	22	65	0	1.26
21547--21649	43	2.4	43	91	1	163	13	26	60	0	1.34
25767--25811	21	2.0	21	91	8	72	2	40	57	0	1.11
25772--25828	21	2.8	20	82	12	62	3	40	56	0	1.17
27141--27180	18	2.2	19	86	4	55	7	37	55	0	1.29
29388--29650	41	6.4	41	76	15	174	19	29	50	0	1.47
29369--29650	81	3.5	80	75	16	276	18	29	51	0	1.46
29850--29913	23	2.7	23	90	7	94	4	42	53	0	1.22
29850--29926	24	3.3	23	87	7	102	6	40	53	0	1.27

Tables:   1

The End!