Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3796
Parameters: 2 7 7 80 10 50 1000
Length:  39693

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8486--8520
9
3.9
9
84
0
52
57
2
0
40
1.14
9609--9671
22
2.9
22
93
6
103
47
19
15
17
1.83
11159--11242
26
3.2
26
93
0
141
36
23
4
34
1.76
11558--11594
19
1.9
19
88
0
56
48
2
16
32
1.60
11651--11706
24
2.3
24
82
14
62
57
8
3
30
1.47
11678--11752
30
2.5
30
81
10
82
56
6
2
34
1.40
11790--11835
23
1.9
23
82
8
56
63
6
0
30
1.20
13268--13334
24
3.1
20
76
21
64
7
17
4
70
1.28
16218--16301
44
1.9
44
95
4
152
47
4
11
35
1.61
16931--16978
21
2.3
21
78
7
53
64
0
6
29
1.18
16933--16988
22
2.5
21
80
13
58
64
0
8
26
1.23
17441--17498
29
2.0
30
93
3
100
25
18
8
46
1.78
18030--18154
60
2.1
57
81
7
135
40
6
16
36
1.75
18900--18968
35
2.0
35
100
0
138
43
10
17
28
1.81
20012--20054
20
2.1
21
91
4
70
37
2
0
60
1.10
20065--20179
57
2.0
57
86
8
162
45
2
8
43
1.48
20065--20179
29
4.0
29
84
10
155
45
2
8
43
1.48
24186--24223
19
2.0
19
94
0
67
34
10
23
31
1.89
25102--25141
19
2.0
20
86
13
57
77
2
5
15
1.04
25390--25425
16
2.2
16
90
0
54
11
5
0
83
0.80
25716--27043
44
30.4
44
83
6
1506
22
30
17
30
1.96
25716--27057
172
7.7
173
85
5
1606
22
30
17
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26169--26355
103
1.8
104
88
5
290
23
29
17
29
1.97
27250--27372
61
2.0
64
87
7
182
37
12
16
34
1.86
39223--39260
19
2.0
19
94
0
67
34
10
23
31
1.89

Tables:   1

The End!