Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1989
Parameters: 2 7 7 80 10 50 1000
Length:  22301

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
740--787
16
3.1
15
90
6
69
64
2
2
31
1.16
736--791
24
2.3
24
81
6
69
66
1
1
30
1.12
736--787
8
6.5
8
82
8
61
65
1
1
30
1.14
940--1004
25
2.8
24
83
6
80
52
6
7
33
1.55
993--1072
29
2.6
31
82
7
85
57
2
5
35
1.34
993--1072
31
2.6
31
84
7
94
57
2
5
35
1.34
1014--1075
14
4.1
16
73
23
55
59
0
3
37
1.13
1020--1147
29
4.3
29
63
23
68
57
2
4
35
1.33
1105--1150
25
1.9
25
86
8
69
60
0
4
34
1.16
1634--1748
30
3.8
30
88
2
144
20
4
47
26
1.69
2437--2469
15
2.2
15
94
0
57
72
0
6
21
1.05
2369--2556
103
1.8
102
83
4
252
42
17
17
23
1.88
2463--2684
73
3.0
73
87
2
320
31
21
17
28
1.96
2708--3024
127
2.5
124
82
12
366
34
21
16
27
1.95
2923--3332
72
5.5
70
74
17
328
32
21
16
29
1.95
2740--3044
125
2.4
126
83
8
388
35
20
15
28
1.93
3147--3574
72
5.6
73
74
16
343
32
21
17
28
1.96
3340--3367
14
2.0
14
100
0
56
57
7
21
14
1.61
3257--3424
93
1.8
91
87
7
250
33
20
17
28
1.95
3191--3496
164
1.9
164
89
5
485
32
20
17
29
1.96
3349--3573
73
3.1
72
88
8
323
32
20
18
28
1.97
3556--3600
22
2.0
22
100
0
90
46
4
17
31
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2923--3662
238
3.1
235
86
7
961
33
20
17
29
1.95
3483--3662
94
1.9
95
87
3
265
34
16
17
31
1.92
3724--5096
690
2.0
690
97
2
2600
27
19
17
35
1.94
12595--12630
12
3.0
12
95
0
63
41
5
25
27
1.77
14194--14241
16
3.1
15
90
6
69
64
2
2
31
1.16
14190--14245
24
2.3
24
81
6
69
66
1
1
30
1.12
14190--14241
8
6.5
8
82
8
61
65
1
1
30
1.14
14404--14456
22
2.3
22
87
6
70
50
7
7
33
1.59
14396--14456
24
2.7
23
84
5
79
52
6
8
32
1.57
14473--14526
23
2.5
21
84
6
72
57
1
1
38
1.20
14478--14524
19
2.3
21
85
7
62
57
2
2
38
1.23
14474--14584
7
16.3
7
66
22
51
54
3
3
37
1.35
14472--14536
23
2.9
22
81
4
67
55
3
4
36
1.36
14470--14587
46
2.6
43
73
16
112
56
3
3
36
1.33
14556--14601
25
1.9
25
86
8
69
60
0
4
34
1.16
15100--15229
59
2.2
60
86
4
174
22
3
45
28
1.70
15086--15229
30
4.8
29
83
6
155
22
4
45
27
1.70
19026--19177
32
4.8
32
85
1
216
46
9
12
32
1.73
19026--19176
63
2.4
63
90
1
239
45
9
12
32
1.74
20152--20176
11
2.3
11
100
0
50
0
0
16
84
0.63
21428--21463
19
1.9
19
94
5
65
38
13
19
27
1.90
21687--21821
61
2.2
61
91
0
216
48
16
12
22
1.80

Tables:   1

The End!