Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 100 of 332
Found at i:32270089 original size:46 final size:46
Alignment explanation
Indices: 32270022--32270243 Score: 259
Period size: 46 Copynumber: 4.8 Consensus size: 46
32270012 TGTAACCCGC
* * * * *
32270022 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * * * **
32270068 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGC-CTAATT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCA-T
* * * *
32270114 ACATCTCA-CGAACTCGGACTCAACTGAACGAGTTCGGACGCTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
32270161 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32270207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32270244 TGCCCAAATA
Statistics
Matches: 147, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
45 3 0.02
46 110 0.75
47 30 0.20
48 4 0.03
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32270136 original size:93 final size:93
Alignment explanation
Indices: 32270029--32270197 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 93
32270019 CGCCCATAAG
* * *
32270029 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
32270094 ATGAGCTCGGATGCCTAATTACATCTCA
66 ACGAGCTCGGATGCCTAATTACATCTCA
* * *
32270122 CGAACTCGGACTCAACTGAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
32270187 ACGAGTTCGGA
66 ACGAGCTCGGA
32270198 CACTCGCATC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAATTACATCTCA
Found at i:32272659 original size:38 final size:38
Alignment explanation
Indices: 32272604--32272824 Score: 331
Period size: 38 Copynumber: 5.8 Consensus size: 38
32272594 GGCCTAAAGA
*
32272604 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAAT
*
32272642 CCCGCAGGCTTTGTGCTGGTAATATATCC-GGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
32272679 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
32272717 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
32272755 CCTGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * * *
32272793 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGG
32272825 CCTTCATGCC
Statistics
Matches: 170, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
37 37 0.22
38 131 0.77
39 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:32272865 original size:43 final size:43
Alignment explanation
Indices: 32272817--32272898 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
32272807 GCTGGTATTA
*
32272817 TATTCGGGCCTTCATGCCTAGCAGGCT-TCATGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGG-TGTAATGCCGGTGATGTG
*
32272860 TATTCGGGCCTTCGTGCCTAGCAGGTGTAATGCCGGTGA
1 TATTCGGGCCTTCATGCCTAGCAGGTGTAATGCCGGTGA
32272899 AATGATATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.15, C:0.24, G:0.32, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCAGGTGTAATGCCGGTGATGTG
Found at i:32274586 original size:28 final size:29
Alignment explanation
Indices: 32274554--32274608 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
32274544 TCCGAAATAC
*
32274554 TGATA-TCATGACCCGAAGCCAAATCAAT
1 TGATATTCATGACCCGAAACCAAATCAAT
*
32274582 TGATATTCATGGCCCGAAACCAAATCA
1 TGATATTCATGACCCGAAACCAAATCA
32274609 GTATCACTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.22
Consensus pattern (29 bp):
TGATATTCATGACCCGAAACCAAATCAAT
Found at i:32276857 original size:42 final size:43
Alignment explanation
Indices: 32276793--32276916 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
32276783 GAAACTAAGA
* * * * * *
32276793 CATCTGAACTCTTTGAGTGGTCCGAGTTCGTGA-GATATGTG-G
1 CATCTGAGCTCGTTGAGAGGTCCGAGTTCATGATG-GATGCGAG
* *
32276835 CATCTGAGCTCGTTAAGAGGTCCGAGTTCATTATGGATGCGAG
1 CATCTGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGCGAG
* *
32276878 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATG
1 CATCTGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATG
32276917 GGATTCATGT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.29
Consensus pattern (43 bp):
CATCTGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGCGAG
Found at i:32276888 original size:43 final size:45
Alignment explanation
Indices: 32276834--32276967 Score: 155
Period size: 51 Copynumber: 2.9 Consensus size: 45
32276824 GAGATATGTG
* *
32276834 GCATCTGAGCTCGTTAAGAGGTCCGAGTTCATTATGGATGC-G-A
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCAGTA
*
32276877 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGGGATTCATGTA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCAT--T--AT-GGATGCA-GTA
* *
32276928 ACATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
32276968 TGTTACATGT
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
43 30 0.39
45 1 0.01
46 4 0.05
47 4 0.05
48 5 0.06
49 1 0.01
50 1 0.01
51 31 0.40
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (45 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCAGTA
Found at i:32289317 original size:38 final size:39
Alignment explanation
Indices: 32289275--32289368 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 39
32289265 CCATCTCTGA
* * * *
32289275 CCAACCCAACGCACCA-TGTGGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAGTATGGGGATAGAATCAACCCAC
* *
32289313 CCAACCCTACACACCAAGTATGGGGATATAATCAACCCAT
1 CCAACCCTACACACC-AGTATGGGGATAGAATCAACCCAC
32289353 CCAACCCTACACACCA
1 CCAACCCTACACACCA
32289369 AAAGGTATCG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 13 0.27
39 2 0.04
40 33 0.69
ACGTcount: A:0.35, C:0.38, G:0.14, T:0.13
Consensus pattern (39 bp):
CCAACCCTACACACCAGTATGGGGATAGAATCAACCCAC
Found at i:32289351 original size:40 final size:40
Alignment explanation
Indices: 32289293--32289369 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
32289283 ACGCACCATG
*
32289293 TGGGGATAGAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
* *
32289333 TGGGGATATAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAA
32289370 AAGGTATCGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:32294042 original size:29 final size:30
Alignment explanation
Indices: 32293920--32294057 Score: 120
Period size: 30 Copynumber: 4.6 Consensus size: 30
32293910 CTATTACTTC
* * *
32293920 ACCATCCATTTTCATAAGTTGATAGCCGAA
1 ACCATCCCTTTTCATAATTTGATAGTCGAA
* * *
32293950 GCCATCCCTTCTT-ATAGA-TCGATAGCCGAA
1 ACCATCCCTT-TTCATA-ATTTGATAGTCGAA
* * **
32293980 GCCATCCCTTTTCATAGTACGATAGTCGAA
1 ACCATCCCTTTTCATAATTTGATAGTCGAA
* **
32294010 ACCATCTCTTTTCA-AATTTGATAGTCGTC
1 ACCATCCCTTTTCATAATTTGATAGTCGAA
32294039 ACCATCCCTTTTCATAATT
1 ACCATCCCTTTTCATAATT
32294058 GAAAGCTGAA
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
29 25 0.28
30 61 0.69
31 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (30 bp):
ACCATCCCTTTTCATAATTTGATAGTCGAA
Found at i:32294059 original size:29 final size:28
Alignment explanation
Indices: 32293920--32294082 Score: 114
Period size: 30 Copynumber: 5.5 Consensus size: 28
32293910 CTATTACTTC
*
32293920 ACCATCCATTTTCATAAGTTGATAGCCGA
1 ACCATCCCTTTTCATAA-TTGATAGCCGA
*
32293949 AGCCATCCCTTCTT-ATAGATCGATAGCCGA
1 A-CCATCCCTT-TTCATA-ATTGATAGCCGA
* * *
32293979 AGCCATCCCTTTTCATAGTACGATAGTCGAA
1 A-CCATCCCTTTTCATAAT-TGATAGCCG-A
* * *
32294010 ACCATCTCTTTTCA-AATTTGATAGTCGTC
1 ACCATCCCTTTTCATAA-TTGATAGCCG-A
* *
32294039 ACCATCCCTTTTCATAATTGAAAGCTGA
1 ACCATCCCTTTTCATAATTGATAGCCGA
**
32294067 AGTTATCCCTTTTCAT
1 A-CCATCCCTTTTCAT
32294083 TCGTCGATGA
Statistics
Matches: 109, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
28 1 0.01
29 45 0.41
30 58 0.53
31 5 0.05
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (28 bp):
ACCATCCCTTTTCATAATTGATAGCCGA
Found at i:32299092 original size:25 final size:26
Alignment explanation
Indices: 32299038--32299099 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
32299028 AGAAGAAACC
* *
32299038 ATAAAAATAAAAATATAGTTTAAAAG
1 ATAAAAATAAAAATATAGTCTAAAAA
*
32299064 ATAAAAA-CAAAATA-AGTCTAAGAAA
1 ATAAAAATAAAAATATAGTCTAA-AAA
*
32299089 ATAACAATAAA
1 ATAAAAATAAA
32299100 CATAAATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 6 0.21
25 14 0.48
26 9 0.31
ACGTcount: A:0.68, C:0.05, G:0.06, T:0.21
Consensus pattern (26 bp):
ATAAAAATAAAAATATAGTCTAAAAA
Found at i:32299104 original size:6 final size:6
Alignment explanation
Indices: 32299086--32299136 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
32299076 TAAGTCTAAG
* * * * *
32299086 AAAATA ACAATA AACATA AATATA AAAATA GAAATA AATATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
32299134 AAA
1 AAA
32299137 CAAATAAACT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:32299114 original size:24 final size:24
Alignment explanation
Indices: 32299086--32299136 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
32299076 TAAGTCTAAG
*
32299086 AAAATA-ACAATAAACATAAATATA
1 AAAATAGA-AATAAACATAAAAATA
*
32299110 AAAATAGAAATAAATATAAAAATA
1 AAAATAGAAATAAACATAAAAATA
32299134 AAA
1 AAA
32299137 CAAATAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (24 bp):
AAAATAGAAATAAACATAAAAATA
Found at i:32299115 original size:18 final size:17
Alignment explanation
Indices: 32299089--32299142 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
32299079 GTCTAAGAAA
*
32299089 ATAACAATAAACATAAAT
1 ATAAAAATAAA-ATAAAT
32299107 ATAAAAATAGAAATAAAT
1 ATAAAAATA-AAATAAAT
*
32299125 ATAAAAATAAAACAAAT
1 ATAAAAATAAAATAAAT
32299142 A
1 A
32299143 AACTTAATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 8 0.24
18 23 0.70
19 2 0.06
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.20
Consensus pattern (17 bp):
ATAAAAATAAAATAAAT
Found at i:32306731 original size:21 final size:21
Alignment explanation
Indices: 32306694--32306735 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32306684 ATTTTTCCAA
*
32306694 GAATATGAATTGAATTAAATT
1 GAATATGAATAGAATTAAATT
32306715 GAATATGAAATAG-ATTAAATT
1 GAATATG-AATAGAATTAAATT
32306736 AACGTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (21 bp):
GAATATGAATAGAATTAAATT
Found at i:32316702 original size:4 final size:4
Alignment explanation
Indices: 32316693--32316722 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
32316683 ATGGAATTAA
32316693 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
32316723 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:32317898 original size:13 final size:13
Alignment explanation
Indices: 32317880--32317955 Score: 64
Period size: 13 Copynumber: 5.8 Consensus size: 13
32317870 AGGATGAAGT
32317880 AAAAATAAAATTA
1 AAAAATAAAATTA
32317893 AAAAATAAAA-TA
1 AAAAATAAAATTA
* ***
32317905 AAAAGTAGTTTTA
1 AAAAATAAAATTA
*
32317918 AAAAGATAAAAGTA
1 AAAA-ATAAAATTA
*
32317932 AAAACATAAAAATA
1 AAAA-ATAAAATTA
*
32317946 ATAAATAAAA
1 AAAAATAAAA
32317956 GTCTTTAAAC
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
12 8 0.16
13 22 0.45
14 19 0.39
ACGTcount: A:0.72, C:0.01, G:0.05, T:0.21
Consensus pattern (13 bp):
AAAAATAAAATTA
Found at i:32321259 original size:28 final size:24
Alignment explanation
Indices: 32321171--32321255 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
32321161 ATGAGCCAAC
* * *
32321171 ATTGGCACTAAGTGTGC-AGATTTG
1 ATTGGCACTATGTGTGCGA-AATCG
*
32321195 AATGGCACTATGTGTGCGAAATCG
1 ATTGGCACTATGTGTGCGAAATCG
32321219 ATTGGCACTATGTGTGCGAAATCG
1 ATTGGCACTATGTGTGCGAAATCG
32321243 ATTGGCACTATGT
1 ATTGGCACTATGT
32321256 ATGTTGGTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
24 54 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (24 bp):
ATTGGCACTATGTGTGCGAAATCG
Found at i:32340707 original size:50 final size:50
Alignment explanation
Indices: 32340517--32340709 Score: 210
Period size: 50 Copynumber: 3.8 Consensus size: 50
32340507 ATTGTGAATA
* * * *
32340517 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATATTG-TTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGA-TGATTAGGT
* * * ** * *
32340567 CGCATGTGTAGTACTAAATGCAGGCTACTATACGTACTCA-ATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA-TCAGATGA-TTAGGT
* *
32340618 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGATTAGGT
* *
32340668 CACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT
32340710 AGCTTCGGCT
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
49 2 0.02
50 75 0.64
51 40 0.34
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGATTAGGT
Found at i:32340716 original size:101 final size:101
Alignment explanation
Indices: 32340517--32340703 Score: 277
Period size: 101 Copynumber: 1.9 Consensus size: 101
32340507 ATTGTGAATA
* * * *
32340517 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATATTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTGAAGTCACATGTGTAGTACT
32340582 AAATGCAGGCTACTATACGTACTCAATGACTTCGAT
66 AAATGCAGGCTACTATACGTACTCAATGACTTCGAT
* *
32340618 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTG-TGAAGTCACATGTGTAGTAC
* * *
32340682 TAAGTGTAGGCTACTATGCGTA
65 TAAATGCAGGCTACTATACGTA
32340704 TCAGATAGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
100 2 0.03
101 74 0.97
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTGAAGTCACATGTGTAGTACT
AAATGCAGGCTACTATACGTACTCAATGACTTCGAT
Found at i:32347949 original size:50 final size:49
Alignment explanation
Indices: 32347874--32348110 Score: 244
Period size: 50 Copynumber: 4.8 Consensus size: 49
32347864 TGAATACACG
* * * *
32347874 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTGTTAA-TCACA
* ** *
32347924 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TC-A-GACTGTTAATCACA
* * * *
32347975 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTG-TTA-ATCACA
* * * * *
32348025 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTTTTAATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTGTTAATCACA
*
32348074 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA
32348111 TAACTTCGGC
Statistics
Matches: 156, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 39 0.25
50 72 0.46
51 36 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTGTTAATCACA
Found at i:32348045 original size:101 final size:98
Alignment explanation
Indices: 32347870--32348111 Score: 297
Period size: 101 Copynumber: 2.4 Consensus size: 98
32347860 ATTGTGAATA
* * * *
32347870 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
* *
32347935 AAGTGCAGGCTACTATGCGTACTC-AATGACTTCGAT
65 AAGTGCAGGCTACTATGCGTAC-CGGAT--CTTCAAT
* *
32347971 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG-TGAAGTCACATGTGTAGTACT
* * *
32348036 AAGTGCAGGCTACTATGTGTACCGGATTTTTAAT
65 AAGTGCAGGCTACTATGCGTACCGGATCTTCAAT
* * * *
32348070 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
32348112 AACTTCGGCT
Statistics
Matches: 124, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
99 42 0.34
100 3 0.02
101 79 0.64
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTATGCGTACCGGATCTTCAAT
Found at i:32356527 original size:55 final size:55
Alignment explanation
Indices: 32356420--32356537 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 55
32356410 AATAAAAAAC
* * * * **
32356420 GCACACGAGTAGGCCACACGGGCGTGAGTCATTGCCGTGTCTAAAAGACAGTGTT
1 GCACACGGGCAGGCAACACGGGCGTGAGCCACGGCCGTGTCTAAAAGACAGTGTT
* * *
32356475 GCCCACGGGCAGGCAACACGGGCGTGTGCCACGGCCGTGT-TAATAAGTCAGTGTT
1 GCACACGGGCAGGCAACACGGGCGTGAGCCACGGCCGTGTCTAA-AAGACAGTGTT
32356530 GCACACGG
1 GCACACGG
32356538 CCCAAAGGCA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 3 0.06
55 49 0.94
ACGTcount: A:0.23, C:0.26, G:0.33, T:0.18
Consensus pattern (55 bp):
GCACACGGGCAGGCAACACGGGCGTGAGCCACGGCCGTGTCTAAAAGACAGTGTT
Found at i:32360924 original size:23 final size:23
Alignment explanation
Indices: 32360897--32360946 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
32360887 AAAAAACTTT
*
32360897 TACAAGTACAAATATAATTTTA-G
1 TACAAGTAC-AATATAATTATATG
32360920 TACAAGTACAATATAATTATATG
1 TACAAGTACAATATAATTATATG
32360943 TACA
1 TACA
32360947 TCCCTAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (23 bp):
TACAAGTACAATATAATTATATG
Found at i:32362341 original size:19 final size:19
Alignment explanation
Indices: 32362313--32362359 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
32362303 CTAAAATGTG
*
32362313 AATAAAATTTATCTTCCTA
1 AATAAAATTTATCTACCTA
* *
32362332 AATAAGATTTCTCTACCTA
1 AATAAAATTTATCTACCTA
32362351 AATAAAATT
1 AATAAAATT
32362360 AAAATATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAAAATTTATCTACCTA
Found at i:32366173 original size:41 final size:41
Alignment explanation
Indices: 32366116--32366197 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
32366106 TCTTAATTGG
32366116 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAA
1 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAA
*
32366157 GAAAATAGTT-TCCTTATTCTAATAAACTACTAAAAGATAAA
1 GAAAATAGTTCT-CTTATTCTAATAAACTACTAAAACATAAA
32366198 ATATAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (41 bp):
GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAA
Found at i:32366258 original size:19 final size:19
Alignment explanation
Indices: 32366218--32366261 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
32366208 GAATAAAATA
**
32366218 TAAATAAAATTTATCTTTC
1 TAAATAAAATTTATCTACC
*
32366237 TAAATAAGATTTATCTACC
1 TAAATAAAATTTATCTACC
32366256 TAAATA
1 TAAATA
32366262 TATTTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.41
Consensus pattern (19 bp):
TAAATAAAATTTATCTACC
Found at i:32366360 original size:21 final size:21
Alignment explanation
Indices: 32366334--32366375 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32366324 ATCAACAAAG
32366334 GTAAATTGTTGAGGTATTCTA
1 GTAAATTGTTGAGGTATTCTA
32366355 GTAAATTGTTGAGGTATTCTA
1 GTAAATTGTTGAGGTATTCTA
32366376 AAAGCTCTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.43
Consensus pattern (21 bp):
GTAAATTGTTGAGGTATTCTA
Found at i:32374962 original size:19 final size:20
Alignment explanation
Indices: 32374940--32374992 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 20
32374930 AATTAATCAT
32374940 GATTAAGTAAACTAAT-TAA
1 GATTAAGTAAACTAATCTAA
* *
32374959 GATTAACTAAAATTAATCTAA
1 GATTAAGT-AAACTAATCTAA
32374980 GTATATAAGTAAA
1 G-AT-TAAGTAAA
32374993 ACTTAGTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 7 0.26
20 7 0.26
21 4 0.15
22 5 0.19
23 4 0.15
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (20 bp):
GATTAAGTAAACTAATCTAA
Found at i:32379030 original size:48 final size:48
Alignment explanation
Indices: 32378944--32379035 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
32378934 GAATTGCAGT
* *
32378944 AAGATGGGACACAAGTCATCCAATTATAGGTTTTCAAAGAGGGTAAAA
1 AAGATGGGACACAAGTCATCCAATTATAGGCTTCCAAAGAGGGTAAAA
* * * * *
32378992 AAGATGGGATATAAGTCATTCGATTGTAGGCTTCCAAAGAGGGT
1 AAGATGGGACACAAGTCATCCAATTATAGGCTTCCAAAGAGGGT
32379036 CAGAACAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (48 bp):
AAGATGGGACACAAGTCATCCAATTATAGGCTTCCAAAGAGGGTAAAA
Found at i:32382260 original size:27 final size:28
Alignment explanation
Indices: 32382219--32382282 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
32382209 GGCATAATCA
*
32382219 TCATTTTAC-CATACATGGGTATTACGG
1 TCATTTTACACATACAAGGGTATTACGG
**
32382246 TCATTTTACAC-TACAAGGGTATTTTGG
1 TCATTTTACACATACAAGGGTATTACGG
*
32382273 TGATTTTACA
1 TCATTTTACA
32382283 AACTGGGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.41
Consensus pattern (28 bp):
TCATTTTACACATACAAGGGTATTACGG
Found at i:32397232 original size:26 final size:26
Alignment explanation
Indices: 32397203--32397252 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32397193 TAATAATATC
**
32397203 GCAGCAAGGCTGCCAGTAACAGTAAT
1 GCAGCAAAACTGCCAGTAACAGTAAT
*
32397229 GCAGCAAAACTGCCAGTATCAGTA
1 GCAGCAAAACTGCCAGTAACAGTA
32397253 TATGTGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (26 bp):
GCAGCAAAACTGCCAGTAACAGTAAT
Found at i:32398730 original size:16 final size:17
Alignment explanation
Indices: 32398701--32398734 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
32398691 GAGAAAAATT
32398701 CCAAAAGAGGAAAACTGA
1 CCAAAAGA-GAAAACTGA
32398719 CCAAAAGA-AAAACTGA
1 CCAAAAGAGAAAACTGA
32398735 AATAAGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.18, G:0.18, T:0.06
Consensus pattern (17 bp):
CCAAAAGAGAAAACTGA
Found at i:32410284 original size:27 final size:27
Alignment explanation
Indices: 32410218--32410315 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
32410208 CATGAGATTG
* * *
32410218 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GGTTT-GATTATATA
32410247 GCACTAAGTGTGCGGTTTGATTATATA
1 GCACTAAGTGTGCGGTTTGATTATATA
32410274 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCG-GTTTGATTATATA
*
32410301 GCACTGAGTGTGCGG
1 GCACTAAGTGTGCGG
32410316 ACTTAATATA
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
26 1 0.02
27 44 0.69
28 6 0.09
29 13 0.20
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGGTTTGATTATATA
Found at i:32410325 original size:27 final size:28
Alignment explanation
Indices: 32410218--32410328 Score: 109
Period size: 27 Copynumber: 4.0 Consensus size: 28
32410208 CATGAGATTG
** * * *
32410218 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGGACTT-GATTATATA
*
32410247 GCACTAAGTGTGCGG-TTTGATTATATA
1 GCACTAAGTGTGCGGACTTGATTATATA
*
32410274 GCACTAAGTGTGC-GAGTTGATTATATA
1 GCACTAAGTGTGCGGACTTGATTATATA
* *
32410301 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGCGGACTTGAT-TATAT
32410329 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.01
27 42 0.58
28 9 0.12
29 20 0.28
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGGACTTGATTATATA
Found at i:32410328 original size:56 final size:56
Alignment explanation
Indices: 32410218--32410328 Score: 127
Period size: 54 Copynumber: 2.0 Consensus size: 56
32410208 CATGAGATTG
* * * *
32410218 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGGCTTAATTATATA
* * *
32410274 GCACTAAGTGTGCGAG-TT-GATTATATAGCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGG-CTTAAT-TATAT
32410329 TTTTGAATCA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
54 20 0.43
55 6 0.13
56 20 0.43
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (56 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGGCTTAATTATATA
Found at i:32423367 original size:19 final size:19
Alignment explanation
Indices: 32423331--32423368 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32423321 ACCTGTCAGA
*
32423331 AGAAAATAAACAAGAAATT
1 AGAAAATAAACAAAAAATT
32423350 AGAAAATAAA-ATAAAAATT
1 AGAAAATAAACA-AAAAATT
32423369 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (19 bp):
AGAAAATAAACAAAAAATT
Found at i:32430020 original size:15 final size:15
Alignment explanation
Indices: 32430000--32430029 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32429990 TTAAGAGTCA
32430000 TTAGAATCAATGTCT
1 TTAGAATCAATGTCT
32430015 TTAGAATCAATGTCT
1 TTAGAATCAATGTCT
32430030 CCTTGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
TTAGAATCAATGTCT
Found at i:32441846 original size:24 final size:23
Alignment explanation
Indices: 32441806--32441850 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
32441796 TTTTACGGAG
*
32441806 AATACAAGAAAATACACTCAAATT
1 AATACAAGAAAAAACAC-CAAATT
32441830 AATACAA-AAGAAAACACCAAA
1 AATACAAGAA-AAAACACCAAA
32441851 GCAAGGAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.64, C:0.18, G:0.04, T:0.13
Consensus pattern (23 bp):
AATACAAGAAAAAACACCAAATT
Found at i:32442741 original size:16 final size:16
Alignment explanation
Indices: 32442720--32442751 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32442710 CCTTTCCCCC
32442720 TATTATTATTATTATT
1 TATTATTATTATTATT
*
32442736 TATTATTATTCTTATT
1 TATTATTATTATTATT
32442752 CTTATTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (16 bp):
TATTATTATTATTATT
Found at i:32442783 original size:14 final size:15
Alignment explanation
Indices: 32442753--32442786 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32442743 ATTCTTATTC
32442753 TTATTAATGTATATA
1 TTATTAATGTATATA
*
32442768 TTATTGATGT-TATA
1 TTATTAATGTATATA
32442782 TTATT
1 TTATT
32442787 TTATATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTAATGTATATA
Found at i:32442786 original size:3 final size:3
Alignment explanation
Indices: 32442720--32442772 Score: 52
Period size: 3 Copynumber: 16.3 Consensus size: 3
32442710 CCTTTCCCCC
* *
32442720 TAT TAT TAT TAT TATT TAT TAT TAT TCT TAT TCT TAT TAAT GTAT ATAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T-AT -TAT -TAT
32442769 TAT T
1 TAT T
32442773 GATGTTATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
3 31 0.74
4 10 0.24
5 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:32449987 original size:20 final size:20
Alignment explanation
Indices: 32449941--32449989 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
32449931 GTTCGCTTCT
**
32449941 CCCACGCCCGTGTATGTAGG
1 CCCACGCCCGTACATGTAGG
**
32449961 CTTACGCCCGTACATGTAGG
1 CCCACGCCCGTACATGTAGG
32449981 CCCACGCCC
1 CCCACGCCC
32449990 CTGTTAATCT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.41, G:0.24, T:0.18
Consensus pattern (20 bp):
CCCACGCCCGTACATGTAGG
Found at i:32457553 original size:7 final size:6
Alignment explanation
Indices: 32457541--32457615 Score: 55
Period size: 6 Copynumber: 11.8 Consensus size: 6
32457531 AAAAAACCAA
* * *
32457541 AAAAAT AATAAAT AAAAA- AATTAATAA AAAAAT CAAAAT CAAAAT CAAAAAT
1 AAAAAT AA-AAAT AAAAAT AA--AA-AT AAAAAT AAAAAT AAAAAT -AAAAAT
32457593 AAAAA- AAAAAT AAAAAAT AAAAA
1 AAAAAT AAAAAT -AAAAAT AAAAA
32457616 AGAAAGGCCA
Statistics
Matches: 58, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
5 7 0.12
6 27 0.47
7 21 0.36
8 1 0.02
9 2 0.03
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:32457614 original size:12 final size:13
Alignment explanation
Indices: 32457540--32457615 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
32457530 AAAAAAACCA
32457540 AAAAAATAATAAAT
1 AAAAAATAA-AAAT
**
32457554 AAAAAA-ATTAAT
1 AAAAAATAAAAAT
*
32457566 AAAAAAATCAAAAT
1 -AAAAAATAAAAAT
*
32457580 -CAAAATCAAAAAT
1 AAAAAAT-AAAAAT
32457593 -AAAAA-AAAAAT
1 AAAAAATAAAAAT
32457604 AAAAAATAAAAA
1 AAAAAATAAAAA
32457616 AGAAAGGCCA
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
11 6 0.12
12 13 0.27
13 21 0.43
14 9 0.18
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:32459347 original size:177 final size:176
Alignment explanation
Indices: 32458688--32459332 Score: 882
Period size: 177 Copynumber: 3.6 Consensus size: 176
32458678 TAATATCAGT
* * * *
32458688 AAATTCACAGATCTTATCTCCCTAAATAGTAGTGGAGCAGATCGAAAACGACGAATCTTATCTCT
1 AAATT-ACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCC
*
32458753 ATGTATCGGCAATGGAGCA-AGTTTAAGCCACCAGCCTTATCTCCTTGAGGTTGCAGTGGAGCAG
65 ATGTATCGGCAATAGAGCAGA-TTTAAGCCACCAGCCTTATCTCC-TGAGGTTGCAGTGGAGCAG
* * * * * *
32458817 GCTCAAGATACAAGTTTTATCTCCCTGAAGTTCCAATGGTGCAAACTAA
128 GCTCAAGATACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGA
* * *
32458866 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCA
1 AAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* *
32458931 TGTATCGACAATAGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAG-GGAGCAAGC
66 TGTATCGGCAATAGAGCAGATTTAAGCCACCAGCCTTATCT-CCTGAGGTTGCAGTGGAGCAGGC
* ** *
32458995 TCAAGATACAAGCCTTATCTCCCTGAAGTTGTAGTGGACCAGACTGA
130 TCAAGATACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGA
* * * * *
32459042 AAATTATAGATATTATCTCTCTAAGCAGTAGTGGAGCAGATCGAATACGGCGAATCTTATCTCCA
1 AAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* * * * *
32459107 TGTATCGGCAATGGAGCAAATTTAAGTCACCAGCCTTATCTCACTGAGGTTGTAGTGGAGCAGGA
66 TGTATCGGCAATAGAGCAGATTTAAGCCACCAGCCTTATCTC-CTGAGGTTGCAGTGGAGCAGGC
*
32459172 TCAAGATACAAGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACTGA
130 TCAAGATACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGA
* * * *
32459219 AAATTGCAGATCTTATCT-CCTCAAACAATAGTAGAGCAGATCGAAGATGGCGAATCTTATCTCC
1 AAATTACAGATCTTATCTCCCT-AAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCC
*
32459283 ATGTATCGGCAATAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGG
65 ATGTATCGGCAATAGAGCAGATTTAAGCCACCAGCCTTATCTC-CTGAGG
32459333 CAGCAAGAGA
Statistics
Matches: 411, Mismatches: 51, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
175 1 0.00
176 155 0.38
177 247 0.60
178 8 0.02
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (176 bp):
AAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
TGTATCGGCAATAGAGCAGATTTAAGCCACCAGCCTTATCTCCTGAGGTTGCAGTGGAGCAGGCT
CAAGATACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGA
Found at i:32459413 original size:353 final size:352
Alignment explanation
Indices: 32458700--32459345 Score: 936
Period size: 353 Copynumber: 1.8 Consensus size: 352
32458690 ATTCACAGAT
* *
32458700 CTTATCTCCCTAAATAGTAGTGGAGCAGATCGAAAACGACGAATCTTATCTCTATGTATCGGCAA
1 CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAAACGACGAATCTTATCTCCATGTATCGGCAA
* *
32458765 TGGAGCAAGTTTAAGCCACCAGCCTTATCTCCTTGAGGTTGCAGTGGAGCAGGCTCAAGATACAA
66 TGGAGCAAATTTAAGCCACCAGCCTTATCTCCTTGAGGTTGCAGTGGAGCAGGATCAAGATACAA
* * * * *
32458830 GTTTTATCTCCCTGAAGTTCCAATGGTGCAAACTAAAAATTACAGATCTTATCTCCCTAAGCAGT
131 GTCTTATCTCCCTGAAGTTACAATGGAGCAAACTAAAAATTACAGATCTTATCTCCCTAAACAAT
*
32458895 AGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCA
196 AGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCA
** * * **
32458960 CCAGCCTTATCTCCCTGAGGTTGCAGGGAGCAAGCTCAAGATACAAGCCTTATCTCCCTGAAGTT
261 CCAGCCTTATCTCCCTGAGGCAGCAGAGAGCAAGCTCAAGATACAAGCCATATCTCCCTGAAGCA
* *
32459025 GTAGTGGACCAGACTGAAAATTATAGAT
326 GTAGTGGACCAGACT-AAAATGATAGAC
* * * * *
32459053 ATTATCTCTCTAAGCAGTAGTGGAGCAGATCGAATACGGCGAATCTTATCTCCATGTATCGGCAA
1 CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAAACGACGAATCTTATCTCCATGTATCGGCAA
* *
32459118 TGGAGCAAATTTAAGTCACCAGCCTTATCTCAC-TGAGGTTGTAGTGGAGCAGGATCAAGATACA
66 TGGAGCAAATTTAAGCCACCAGCCTTATCTC-CTTGAGGTTGCAGTGGAGCAGGATCAAGATACA
* * * * *
32459182 AGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACTGAAAATTGCAGATCTTATCT-CCTCAAACA
130 AGTCTTATCTCCCTGAAGTTACAATGGAGCAAACTAAAAATTACAGATCTTATCTCCCT-AAACA
* * *
32459246 ATAGTAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTTAGC
194 ATAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGC
*
32459311 CACCAGCCTTATCTCTCTGAGGCAGCAAGAGAGCA
259 CACCAGCCTTATCTCCCTGAGGCAGC-AGAGAGCA
32459346 GGTTGAAGAT
Statistics
Matches: 261, Mismatches: 29, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
352 3 0.01
353 250 0.96
354 8 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (352 bp):
CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAAACGACGAATCTTATCTCCATGTATCGGCAA
TGGAGCAAATTTAAGCCACCAGCCTTATCTCCTTGAGGTTGCAGTGGAGCAGGATCAAGATACAA
GTCTTATCTCCCTGAAGTTACAATGGAGCAAACTAAAAATTACAGATCTTATCTCCCTAAACAAT
AGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCA
CCAGCCTTATCTCCCTGAGGCAGCAGAGAGCAAGCTCAAGATACAAGCCATATCTCCCTGAAGCA
GTAGTGGACCAGACTAAAATGATAGAC
Found at i:32460080 original size:21 final size:22
Alignment explanation
Indices: 32460056--32460108 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
32460046 AGGTGATTTC
*
32460056 ATTTTTTTTATTTTCTT-TCTT
1 ATTTTTTTTAGTTTCTTATCTT
* *
32460077 A-TTTTTTGAGTTTCTTATTTT
1 ATTTTTTTTAGTTTCTTATCTT
32460098 ATTTTTTTTAG
1 ATTTTTTTTAG
32460109 ATATATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 13 0.50
21 5 0.19
22 8 0.31
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.75
Consensus pattern (22 bp):
ATTTTTTTTAGTTTCTTATCTT
Found at i:32460959 original size:3 final size:3
Alignment explanation
Indices: 32460910--32460945 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
32460900 CTTTCTCCCC
*
32460910 TAT TAT TAT TA- TAT TAT TAT TCT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
32460946 GATGTTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32460967 original size:17 final size:19
Alignment explanation
Indices: 32460933--32460972 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
32460923 TTATTATTCT
32460933 TATTATTATTATTGATGTTA
1 TATTATTATTATTGATG-TA
32460953 TATTATT-TTA-T-ATGTA
1 TATTATTATTATTGATGTA
32460969 TATT
1 TATT
32460973 TTCTCTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.30
17 3 0.15
18 1 0.05
19 3 0.15
20 7 0.35
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (19 bp):
TATTATTATTATTGATGTA
Found at i:32467652 original size:38 final size:38
Alignment explanation
Indices: 32467564--32467691 Score: 166
Period size: 38 Copynumber: 3.3 Consensus size: 38
32467554 AAACCTGAAC
* * *
32467564 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGAT
* *
32467604 ATAATACCAGCACTAGGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
32467642 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* *
32467680 ATAGTTCCAGCA
1 ATAATACCAGCA
32467692 TATAACCTGC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 52 0.67
39 3 0.04
40 23 0.29
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
Found at i:32473369 original size:31 final size:33
Alignment explanation
Indices: 32473322--32473428 Score: 103
Period size: 31 Copynumber: 3.1 Consensus size: 33
32473312 TAAAAGAAAT
32473322 TATC-TATTGGGTAAGAATTTTGTATTGAAAAAC
1 TATCATATT-GGTAAGAATTTTGTATTGAAAAAC
* *
32473355 TATCATATT-G-AAGAATTTTGGATGAGGAGACAAATC
1 TATCATATTGGTAAGAATTTTGTAT--TGA-A-AAA-C
*
32473391 TATCATATTGGGTAAGAATTTTGTATTGAAAAAT
1 TATCATATT-GGTAAGAATTTTGTATTGAAAAAC
32473425 TATC
1 TATC
32473429 TTCTTTATCT
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
31 12 0.20
32 1 0.02
33 6 0.10
34 9 0.15
35 6 0.10
36 11 0.18
37 2 0.03
38 1 0.02
39 12 0.20
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (33 bp):
TATCATATTGGTAAGAATTTTGTATTGAAAAAC
Found at i:32476211 original size:40 final size:40
Alignment explanation
Indices: 32476155--32476235 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
32476145 TCATTACACC
* * *
32476155 ATATGGGGATAAAATCGACCCACCCATCCCTGCACACCAT
1 ATATGGAGATAAAATCGACCCACCCAACCCTACACACCAT
* *
32476195 ATATGGAGATATAATCGACCCATCCAACCCTACACACCAT
1 ATATGGAGATAAAATCGACCCACCCAACCCTACACACCAT
32476235 A
1 A
32476236 AGGTACCGCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.36, C:0.33, G:0.12, T:0.19
Consensus pattern (40 bp):
ATATGGAGATAAAATCGACCCACCCAACCCTACACACCAT
Found at i:32485984 original size:18 final size:18
Alignment explanation
Indices: 32485961--32485996 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32485951 AATACATAAA
* *
32485961 ATATTATTAAATTTTAAT
1 ATATTAATAAATGTTAAT
32485979 ATATTAATAAATGTTAAT
1 ATATTAATAAATGTTAAT
32485997 TACGAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
ATATTAATAAATGTTAAT
Found at i:32490096 original size:23 final size:23
Alignment explanation
Indices: 32489963--32490097 Score: 73
Period size: 23 Copynumber: 5.7 Consensus size: 23
32489953 GTCATGGTCG
32489963 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTCTTAC-GAGCTG--AAACA
* *
32489989 GTAAGCT-TTATTGAGTTGAAA-A
1 GTAAGCTCTTA-CGAGCTGAAACA
* *
32490011 TGATAAG-TTTTATTGAGCTG-AACA
1 -G-TAAGCTCTTA-CGAGCTGAAACA
* * *
32490035 GTAAGCTCTTTCGAGCTGAATCG
1 GTAAGCTCTTACGAGCTGAAACA
* *
32490058 GTAAGCTAC-AATGAGCTGAAACA
1 GTAAGCT-CTTACGAGCTGAAACA
*
32490081 ATAAGCTCTTACGAGCT
1 GTAAGCTCTTACGAGCT
32490098 ATGGTGAGTC
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
22 12 0.14
23 41 0.49
24 16 0.19
25 8 0.10
26 7 0.08
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (23 bp):
GTAAGCTCTTACGAGCTGAAACA
Found at i:32510377 original size:19 final size:20
Alignment explanation
Indices: 32510336--32510401 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
32510326 TAAAATACAA
**
32510336 ATTTTAGAATTTTTATGAA-T
1 ATTTT-GAATTTTTAAAAATT
32510356 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
* *
32510375 ATTTTCAATTTTTGAAAATT
1 ATTTTGAATTTTTAAAAATT
32510395 ATTTTGA
1 ATTTTGA
32510402 TTGTTTTGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 7 0.18
19 11 0.28
20 21 0.54
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.55
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:32514421 original size:22 final size:21
Alignment explanation
Indices: 32514390--32514437 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
32514380 AAATATTATG
32514390 TTATTTTTAAAAT-TTAAAAT
1 TTATTTTTAAAATATTAAAAT
*
32514410 TGTATTGTTTAAAATATTTAAAT
1 T-TATT-TTTAAAATATTAAAAT
32514433 TTATT
1 TTATT
32514438 ATTTTAGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.04
21 4 0.17
22 12 0.50
23 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
TTATTTTTAAAATATTAAAAT
Found at i:32514443 original size:23 final size:22
Alignment explanation
Indices: 32514393--32514443 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
32514383 TATTATGTTA
32514393 TTTTTAAAATTTAAAATTGTAT
1 TTTTTAAAATTTAAAATTGTAT
* *
32514415 TGTTTAAAATATTTAAATT-TAT
1 TTTTTAAAAT-TTAAAATTGTAT
32514437 TATTTTA
1 T-TTTTA
32514444 GTATGCTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
TTTTTAAAATTTAAAATTGTAT
Found at i:32516911 original size:30 final size:30
Alignment explanation
Indices: 32516877--32516934 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
32516867 TTTTCCAGCA
*
32516877 TAGGGGTAAAATGGTCATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTT
*
32516907 TAGGGGCAAAATGGTCATTTTTCCAAAG
1 TAGGGGCAAAATGGTCATTTTGCCAAAG
32516935 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAAGTT
Found at i:32517419 original size:46 final size:45
Alignment explanation
Indices: 32517274--32517590 Score: 221
Period size: 46 Copynumber: 6.8 Consensus size: 45
32517264 ATTTCTTGTG
* * * * *
32517274 TGCCAGTGTAAGACATGCCTGGGTCATGCATCAGCCACATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTTATGA
* * * * ** *
32517319 GTGCCAGTATAAGACCATGTCTAGGACATGGCATCGGCATAGAGACGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTTATGA
32517367 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTTATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTTATGA
* * * * *
32517413 TAGCCAGTGTAAGACGTGTCTGGAACACGCATCGG-CTAAGAGT-TG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CG-TTATGA
* * *
32517458 TGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATACAAGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGT-TAT----GA
* * * *
32517507 -GCTAGTATAAGACCATGCCTGGGACATGGCATCGGCCTCGATGATGA
1 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-TTATGA
32517554 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
32517591 TAACTTATCC
Statistics
Matches: 213, Mismatches: 40, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 30 0.14
45 4 0.02
46 58 0.27
47 27 0.13
48 35 0.16
49 45 0.21
50 6 0.03
51 5 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (45 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTTATGA
Found at i:32517487 original size:90 final size:94
Alignment explanation
Indices: 32517271--32517588 Score: 296
Period size: 94 Copynumber: 3.4 Consensus size: 94
32517261 CAGATTTCTT
* *
32517271 GTGTGCCAGTGTAAGACATGCCTGGGTCATGCATCAGCCACATTATGAGTGCCAGTATAAGACCA
1 GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCCAGTATAAGACCA
*
32517336 TGTCTAGGACATGGCATCGGCATAGAGAC
66 TGTCTAGGACATCGCATCGGCATAGAGAC
* * * * *
32517365 GAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTTATGA-TAGCCAGTGTAAGA-C
1 GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGT-GCCAGTATAAGACC
*
32517428 GTGTCT-GGAACA-CGCATCGGC-TA-AGA-
65 ATGTCTAGG-ACATCGCATCGGCATAGAGAC
* ** * *
32517454 GTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATACAAGAGCTAGTATAAG
1 G-TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGAGTGCCAGTATAAG
* * * * *
32517518 ACCATGCCTGGGACATGGCATCGGCCTCGATGA-
62 ACCATGTCTAGGACATCGCATCGGCATAGA-GAC
32517551 -TGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTG-T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
32517589 GGTAACTTAT
Statistics
Matches: 183, Mismatches: 24, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
89 3 0.02
90 36 0.20
91 3 0.02
92 23 0.13
93 18 0.10
94 63 0.34
95 3 0.02
96 2 0.01
97 13 0.07
98 14 0.08
99 5 0.03
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (94 bp):
GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCCAGTATAAGACCA
TGTCTAGGACATCGCATCGGCATAGAGAC
Found at i:32518423 original size:55 final size:55
Alignment explanation
Indices: 32518356--32518471 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
32518346 TAAACTTTTT
* * * *
32518356 AGTCAGTGTTGTACACGGGTAGGCCACACGTGC-GTGTGCCATGGCCATG-TCTTAA
1 AGTCAGTATTGTACACGGGCAAGCCACACGGGCAG-GTGCCATGGCCATGTTCTT-A
* * *
32518411 AGTCAGTATTGTATACGGGCAAGTCACATGGGCAGGTGCCATGGCCATGTTCTTA
1 AGTCAGTATTGTACACGGGCAAGCCACACGGGCAGGTGCCATGGCCATGTTCTTA
32518466 AGTCAG
1 AGTCAG
32518472 ATTCACACAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
55 47 0.90
56 5 0.10
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (55 bp):
AGTCAGTATTGTACACGGGCAAGCCACACGGGCAGGTGCCATGGCCATGTTCTTA
Found at i:32519355 original size:20 final size:19
Alignment explanation
Indices: 32519321--32519358 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32519311 ATGCTTAGGA
32519321 GCCATACAAGTATCAATAC
1 GCCATACAAGTATCAATAC
*
32519340 GCCATCACAGGTATCAATA
1 GCCAT-ACAAGTATCAATA
32519359 TTTTGGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.21
Consensus pattern (19 bp):
GCCATACAAGTATCAATAC
Found at i:32530473 original size:43 final size:43
Alignment explanation
Indices: 32530407--32530576 Score: 190
Period size: 43 Copynumber: 4.0 Consensus size: 43
32530397 AGCTCGTACA
*
32530407 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGAAATCAAATAT-G
32530450 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATATG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACATGAAATCAAATATG
* * *
32530492 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAACTATCAAAT-TG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATG-AA--ATCAAATATG
* * *
32530536 ATGCCAA-TGTACCAAACGTGGTCTTACATGAAATCACATAT
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGAAATCAAATAT
32530577 CGGAATCCTA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
41 6 0.05
42 29 0.26
43 40 0.36
44 28 0.25
45 7 0.06
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACATGAAATCAAATATG
Found at i:32530571 original size:86 final size:85
Alignment explanation
Indices: 32530415--32530576 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
32530405 CAATGCCAAC
* * * * *
32530415 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACATG
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTACCAAACAGGGTCTTACATG
32530480 AAATCAAATATGATGCCGAT
66 AAATCAAATATGATGCCGAT
32530500 GTCCCAGACATGGTCTTACACGTAACTATCAAAT-T-GATGCCAATGTACCAAAC-GTGGTCTTA
1 GTCCCAGACATGGTCTTACACGT-A--ATCAAATATCGATGCCAATGTACCAAACAG-GGTCTTA
*
32530562 CATGAAATCACATAT
62 CATGAAATCAAATAT
32530577 CGGAATCCTA
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
85 22 0.33
86 37 0.55
87 1 0.01
88 7 0.10
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTACCAAACAGGGTCTTACATG
AAATCAAATATGATGCCGAT
Found at i:32531485 original size:22 final size:21
Alignment explanation
Indices: 32531445--32531490 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
32531435 TATTTATCTT
*
32531445 ATAATTAATTAGTAAATT-AC
1 ATAATTAATTAATAAATTAAC
32531465 ATAATTAACCTTAATAAATTAAC
1 ATAATTAA--TTAATAAATTAAC
32531488 ATA
1 ATA
32531491 TAAAACACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
22 9 0.41
23 5 0.23
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAATTAATTAATAAATTAAC
Found at i:32537104 original size:11 final size:11
Alignment explanation
Indices: 32537088--32537119 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
32537078 TTTAAAGTAT
32537088 TATAATAATAA
1 TATAATAATAA
*
32537099 TATAATAGTAA
1 TATAATAATAA
32537110 TATAATAATA
1 TATAATAATA
32537120 TTTTATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (11 bp):
TATAATAATAA
Found at i:32538683 original size:40 final size:40
Alignment explanation
Indices: 32538639--32538784 Score: 233
Period size: 40 Copynumber: 3.6 Consensus size: 40
32538629 ACTAGCTCGT
32538639 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
32538679 AGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAGCA-TA
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCACGA
* *
32538718 TAGCCTGCGGGTCTTTAAGCCTGGATACAATTCTAGCACGA
1 -AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
32538759 AGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATA
32538785 ACATTCCTCA
Statistics
Matches: 97, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.02
40 93 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:32538731 original size:80 final size:80
Alignment explanation
Indices: 32538638--32538791 Score: 290
Period size: 80 Copynumber: 1.9 Consensus size: 80
32538628 TACTAGCTCG
32538638 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
32538703 TAACATTCCAGCATA
66 TAACATTCCAGCATA
* *
32538718 TAGCCTGCGGGTCTTTAAGCCTGGATACAATTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
32538783 TAACATTCC
66 TAACATTCC
32538792 TCAAGTATCA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
TAACATTCCAGCATA
Found at i:32543032 original size:15 final size:18
Alignment explanation
Indices: 32543012--32543053 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 18
32543002 AGTGCCTTTC
32543012 TTTCTTTTAT-TTTT-T-
1 TTTCTTTTATGTTTTATG
32543027 TTTCTTTTATGTTTTATG
1 TTTCTTTTATGTTTTATG
32543045 TTTCTTTTA
1 TTTCTTTTA
32543054 ATTGATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.42
16 4 0.17
17 1 0.04
18 9 0.38
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTCTTTTATGTTTTATG
Found at i:32547360 original size:27 final size:27
Alignment explanation
Indices: 32547312--32547469 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
32547302 GCGAGGCTGC
* *
32547312 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
32547339 CAGATATTGTGGCGGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
32547365 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
32547392 CAGATAATT-TGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
32547418 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
32547445 CAAATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
32547470 GATGCTTCCT
Statistics
Matches: 111, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
25 2 0.02
26 27 0.24
27 77 0.69
28 5 0.05
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:32547396 original size:53 final size:54
Alignment explanation
Indices: 32547330--32547469 Score: 212
Period size: 53 Copynumber: 2.6 Consensus size: 54
32547320 GTGACGAAGT
** *
32547330 CACCAGATACAGAT-ATTGTGGCGGAGCCACCAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
32547384 CACCAGATCAGATAATT-TGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
32547437 CACCAGATCAAATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
32547470 GATGCTTCCT
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
53 53 0.67
54 26 0.33
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:32549099 original size:26 final size:26
Alignment explanation
Indices: 32549064--32549171 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
32549054 TGAAATGCCC
*
32549064 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32549090 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
32549116 ATCATGGAATATTTTCCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32549142 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32549168 ATCA
1 ATCA
32549172 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32553911 original size:19 final size:18
Alignment explanation
Indices: 32553864--32553913 Score: 82
Period size: 18 Copynumber: 2.7 Consensus size: 18
32553854 TTTTGTGTCG
*
32553864 TGTTATTTTGAAATCAAT
1 TGTTGTTTTGAAATCAAT
32553882 TGTTGTTTTGAAATCAAT
1 TGTTGTTTTGAAATCAAT
32553900 TGTTGTTTTTGAAA
1 TGTTG-TTTTGAAA
32553914 ATGCGCCCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 22 0.73
19 8 0.27
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (18 bp):
TGTTGTTTTGAAATCAAT
Found at i:32554483 original size:27 final size:27
Alignment explanation
Indices: 32554441--32554580 Score: 155
Period size: 27 Copynumber: 5.2 Consensus size: 27
32554431 GTGACGAAGT
32554441 CACCAGATACAG--ATATTTGGCAGAGC
1 CACCAGA-ACAGATATATTTGGCAGAGC
*
32554467 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATTTGGCAGAGC
* *
32554494 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATATT-TGGCAGAGC
* *
32554521 CACCAGGACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATTTGGCAGAGC
*
32554548 CACCAGATA-AGATA-ATTGTGGCATAGC
1 CACCAGA-ACAGATATATT-TGGCAGAGC
32554575 CACCAG
1 CACCAG
32554581 GATGCTTCCT
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.04
26 11 0.11
27 79 0.81
28 3 0.03
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATATTTGGCAGAGC
Found at i:32554581 original size:54 final size:54
Alignment explanation
Indices: 32554441--32554582 Score: 234
Period size: 54 Copynumber: 2.6 Consensus size: 54
32554431 GTGACGAAGT
* *
32554441 CACCAGATACAGAT-ATT-TGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATA-AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
32554494 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATAAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
32554548 CACCAGATAAGATAATTGTGGCATAGCCACCAGGA
1 CACCAGATAAGATAATTGTGGCATAGCCACCAGGA
32554583 TGCTTCCTCC
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
52 4 0.05
53 11 0.13
54 68 0.82
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATAAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:32556110 original size:26 final size:26
Alignment explanation
Indices: 32556075--32556182 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
32556065 TGAAATGCCC
*
32556075 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32556101 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32556127 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32556153 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32556179 ATCA
1 ATCA
32556183 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32561453 original size:27 final size:27
Alignment explanation
Indices: 32561405--32561509 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
32561395 GTAAGGCTAC
* *
32561405 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
32561432 CAGATATTGTGGCGGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
32561458 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
32561485 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
32561510 GATGCTTCCT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 8 0.11
27 59 0.84
28 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:32563312 original size:40 final size:40
Alignment explanation
Indices: 32563238--32563379 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
32563228 AACCTAAGTA
* *
32563238 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
32563277 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
32563317 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
32563357 CCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32563380 CATTCGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 12 0.12
40 83 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:32566272 original size:26 final size:26
Alignment explanation
Indices: 32566237--32566344 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
32566227 TGAAATGCCC
*
32566237 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32566263 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32566289 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32566315 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32566341 ATCA
1 ATCA
32566345 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32568449 original size:14 final size:14
Alignment explanation
Indices: 32568430--32568456 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32568420 GATAATGTGA
32568430 AAAATCATGCAACT
1 AAAATCATGCAACT
32568444 AAAATCATGCAAC
1 AAAATCATGCAAC
32568457 CACACGGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (14 bp):
AAAATCATGCAACT
Found at i:32570613 original size:3 final size:3
Alignment explanation
Indices: 32570605--32570642 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
32570595 TTAATTACTT
*
32570605 TTA TTA TTA TTA TTA TTA TTA -TA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32570643 ATGTTAGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:32570730 original size:11 final size:11
Alignment explanation
Indices: 32570714--32570873 Score: 53
Period size: 11 Copynumber: 14.1 Consensus size: 11
32570704 TTATTTCTAA
32570714 TATGTATATAT
1 TATGTATATAT
*
32570725 TATGTAAATAT
1 TATGTATATAT
* *
32570736 TTTAATACTATAT
1 TAT-GTA-TATAT
32570749 TATGTATATAT
1 TATGTATATAT
* *
32570760 TTTTTATATATGT
1 TATGTATATA--T
*
32570773 TATGTACATA-
1 TATGTATATAT
* * * *
32570783 TATTTTTTTAA
1 TATGTATATAT
32570794 TAT-TATAT-T
1 TATGTATATAT
* *
32570803 TTTATATATTAT
1 TATGTATA-TAT
32570815 TATGTATATAT
1 TATGTATATAT
32570826 T-T-TAATATCAT
1 TATGT-ATAT-AT
32570837 TA-GTTATATAT
1 TATG-TATATAT
* *
32570848 TTTTTATACTATTT
1 TATGTATA-TA--T
32570862 TATGTATATAT
1 TATGTATATAT
32570873 T
1 T
32570874 TCTAATACTA
Statistics
Matches: 107, Mismatches: 25, Indels: 34
0.64 0.15 0.20
Matches are distributed among these distances:
9 3 0.03
10 18 0.17
11 45 0.42
12 17 0.16
13 17 0.16
14 7 0.07
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.59
Consensus pattern (11 bp):
TATGTATATAT
Found at i:32570770 original size:48 final size:46
Alignment explanation
Indices: 32570718--32570895 Score: 154
Period size: 48 Copynumber: 3.8 Consensus size: 46
32570708 TTCTAATATG
32570718 TATATATTATGTAAATATTTTAATACTATATTATGTATATATTTTTTA
1 TATATATTATGTAAATATTTTAATA-T-TATTATGTATATATTTTTTA
* * *
32570766 TATATGTTATGTACATATATTTT--T-TTAATAT-TATAT-TTTTATA
1 TATATATTATGTA-A-ATATTTTAATATTATTATGTATATATTTTTTA
* *
32570809 TAT-TATTATGTATATATTTTAATATCATTA-GTTATATATTTTTTA
1 TATATATTATGTAAATATTTTAATATTATTATG-TATATATTTTTTA
* * *
32570854 TACTATTTTATGTATATATTTCTAATACTATATATTGTATAT
1 TA-TATATTATGTAAATATTT-TAATATTAT-TA-TGTATAT
32570896 TTCTAATACC
Statistics
Matches: 105, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
40 7 0.07
42 9 0.09
43 13 0.12
44 10 0.10
45 13 0.12
46 2 0.02
47 15 0.14
48 20 0.19
49 3 0.03
50 12 0.11
51 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.58
Consensus pattern (46 bp):
TATATATTATGTAAATATTTTAATATTATTATGTATATATTTTTTA
Found at i:32570796 original size:13 final size:12
Alignment explanation
Indices: 32570780--32570874 Score: 50
Period size: 12 Copynumber: 7.7 Consensus size: 12
32570770 TGTTATGTAC
32570780 ATATATTTTTTT
1 ATATATTTTTTT
*
32570792 AATATTATATTTTT
1 -ATA-TATTTTTTT
* *
32570806 ATATATTATTAT
1 ATATATTTTTTT
* * *
32570818 GTATATATTTTA
1 ATATATTTTTTT
**
32570830 ATATCA-TTAGTT
1 ATAT-ATTTTTTT
32570842 ATATA-TTTTTT
1 ATATATTTTTTT
*
32570853 ATACTATTTTATGT
1 ATA-TATTTT-TTT
32570867 ATATATTT
1 ATATATTT
32570875 CTAATACTAT
Statistics
Matches: 60, Mismatches: 17, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
11 8 0.13
12 24 0.40
13 15 0.25
14 13 0.22
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (12 bp):
ATATATTTTTTT
Found at i:32570809 original size:26 final size:26
Alignment explanation
Indices: 32570735--32570812 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 26
32570725 TATGTAAATA
* *
32570735 TTTTAATACTATA-TTATGTATATATT
1 TTTTAATATTATATTTATATATAT-TT
* *
32570761 TTTTATATATGT-TATGTACATATATTT
1 TTTTA-ATAT-TATATTTATATATATTT
*
32570788 TTTTAATATTATATTTTTATATATT
1 TTTTAATATTATATTTATATATATT
32570813 ATTATGTATA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
25 1 0.02
26 20 0.49
27 12 0.29
28 8 0.20
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTTAATATTATATTTATATATATTT
Found at i:32570817 original size:18 final size:16
Alignment explanation
Indices: 32570781--32570814 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32570771 GTTATGTACA
32570781 TATATTTTTTTAATAT
1 TATATTTTTTTAATAT
*
32570797 TATATTTTTAT-ATAT
1 TATATTTTTTTAATAT
32570812 TAT
1 TAT
32570815 TATGTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATATTTTTTTAATAT
Found at i:32570824 original size:24 final size:24
Alignment explanation
Indices: 32570718--32570874 Score: 99
Period size: 24 Copynumber: 6.9 Consensus size: 24
32570708 TTCTAATATG
* *
32570718 TATA-TATTATGTAAATATTTTAA
1 TATATTATTATGTATATATTTTTA
32570741 TACTA-TATTATGTATATATTTTT-
1 TA-TATTATTATGTATATATTTTTA
* * *
32570764 TATATATGTTATGTACATATATTT-
1 TATAT-TATTATGTATATATTTTTA
*
32570788 T-T-TTAATAT-TATAT-TTTTATA
1 TATATTATTATGTATATATTTT-TA
32570809 T--ATTATTATGTATATATT-TTA
1 TATATTATTATGTATATATTTTTA
*
32570830 -ATATCATTA-GTTATATATTTTTTA
1 TATATTATTATG-TATATA-TTTTTA
32570854 TACTATT-TTATGTATATATTT
1 TA-TATTATTATGTATATATTT
32570875 CTAATACTAT
Statistics
Matches: 106, Mismatches: 12, Indels: 31
0.71 0.08 0.21
Matches are distributed among these distances:
19 3 0.03
20 5 0.05
21 14 0.13
22 21 0.20
23 9 0.08
24 40 0.38
25 10 0.09
26 4 0.04
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (24 bp):
TATATTATTATGTATATATTTTTA
Found at i:32570932 original size:18 final size:17
Alignment explanation
Indices: 32570911--32570944 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32570901 ATACCATTAT
32570911 TATTTATATATATGTATG
1 TATTTATATAT-TGTATG
*
32570929 TATTTATGTATTGTAT
1 TATTTATATATTGTAT
32570945 TATAGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (17 bp):
TATTTATATATTGTATG
Found at i:32571122 original size:27 final size:25
Alignment explanation
Indices: 32571024--32571217 Score: 125
Period size: 25 Copynumber: 7.7 Consensus size: 25
32571014 TATATATGTA
*
32571024 TATATTATGTATATATCTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* * * *
32571049 TATATTATTTATATTTTTTTTCTTGCATAT
1 TATATTATGTATA---TATTT-TT-AATAC
*
32571079 TATCTTATGTATATATTTTTTAATAAC
1 TATATTATGTATATA-TTTTTAAT-AC
* **
32571106 TATATTATGTATGTATTTTTAACGC
1 TATATTATGTATATATTTTTAATAC
*
32571131 TATATTATGTACATATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* *
32571156 -----TATGTATATATTTTTTATTC
1 TATATTATGTATATATTTTTAATAC
*
32571176 TTATTATTACGTATATA-TTTTAATA-
1 -TA-TATTATGTATATATTTTTAATAC
*
32571201 TATA-TACGTATATATTT
1 TATATTATGTATATATTT
32571218 ATAGATCATT
Statistics
Matches: 130, Mismatches: 24, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
20 17 0.13
22 10 0.08
23 4 0.03
24 2 0.02
25 34 0.26
26 15 0.12
27 26 0.20
28 6 0.05
29 2 0.02
30 14 0.11
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:32571136 original size:57 final size:54
Alignment explanation
Indices: 32571028--32571158 Score: 128
Period size: 57 Copynumber: 2.4 Consensus size: 54
32571018 TATGTATATA
* **
32571028 TTATGTATATATCTTTAATACTATATTATTTATATTTTTTTTCTTGCATATTATC
1 TTATGTATATATCTTTAATACTATATTATGTATATTTTTTAAC-TGCATATTATC
* *
32571083 TTATGTATATATTTTTTAATAACTATATTATGTATGTATTTTTAAC-GC-TA-TA--
1 TTATGTATATA-TCTTTAAT-ACTATATTATGTATAT-TTTTTAACTGCATATTATC
* *
32571135 TTATGTACATATTTTTAATACTAT
1 TTATGTATATATCTTTAATACTAT
32571159 GTATATATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
50 5 0.07
51 8 0.12
52 10 0.15
54 2 0.03
55 13 0.19
56 9 0.13
57 14 0.21
58 6 0.09
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (54 bp):
TTATGTATATATCTTTAATACTATATTATGTATATTTTTTAACTGCATATTATC
Found at i:32576629 original size:27 final size:27
Alignment explanation
Indices: 32576599--32576733 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
32576589 GGGGCAGAAT
* * *
32576599 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32576626 GGTAATTCTACCCTAC-AGAGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
32576653 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32576680 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32576707 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
32576734 AATAATTTTA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.02
27 91 0.96
28 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32582393 original size:10 final size:9
Alignment explanation
Indices: 32582363--32582395 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
32582353 ACATATGCTC
32582363 TTCTTTTTT
1 TTCTTTTTT
32582372 TTCTTTTTT
1 TTCTTTTTT
32582381 TTCTCTTTTT
1 TTCT-TTTTT
32582391 TTCTT
1 TTCTT
32582396 CACGAGCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:32584998 original size:679 final size:678
Alignment explanation
Indices: 32583702--32585058 Score: 2518
Period size: 679 Copynumber: 2.0 Consensus size: 678
32583692 GATCCTCGCT
*
32583702 CTCTTCAATTCTTTGCTGGAGAATAAAGTCTCTGGCTATTCGATAGAGGTCCCAATCTGTGATTG
1 CTCTTCAATTCTTTGCTGGAGAACAAAGTCTCTGGCTATTCGATAGAGGTCCCAATCTGTGATTG
32583767 TTGTAACATCCCGAAATAGGGCCTAAACGGAACAGTGGTTGCGAAACCACAAACCTGAGGTAGAA
66 TTGTAACATCCCGAAATAGGGCCTAAACGGAACAGTGGTTGCGAAACCACAAACCTGAGGTAGAA
32583832 AATTTATTTTATTATTATTTTGAGTTCATGATATGATTGCATAATGGTGTGAAAATTTCGTGATG
131 AATTTATTTTATTATTATTTTGAGTTCATGATATGATTGCATAATGGTGTGAAAATTTCGTGATG
*
32583897 AAATTCTATGCATAAAGTGCTTAAGTTGAGATTAGGGACTAAATCGAATAATTTGCAAAACTTGC
196 AAATTCTATGCATAAAGTGCTTAAGTTGAGATTAGGGACTAAATCAAATAATTTGCAAAACTTGC
*
32583962 ATTCTAGAAGTTTTTAGTATGAAATTGCTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTT
261 ATTCTAAAAGTTTTTAGTATGAAATTGCTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTT
32584027 GACCAATTTCTAAGTCTATGGACAAAAGTTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTA
326 GACCAATTTCTAAGTCTATGGACAAAAGTTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTA
32584092 AGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAAATTTTGTCC
391 AGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAAATTTTGTCC
*
32584157 ATCTTCTTCATTAGGATGAAATTTCAACGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTTAAA
456 ATCTTCTTCATTAGGACGAAATTTCAACGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTTAAA
**
32584222 CTCCATAGTAAGTGATTCCAAGCCCTGTTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACT
521 CTCCATAGTAAGTGATTCCAAGCCCCATTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACT
32584287 TGATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTGGAAAAATAACCATAGGTGA
586 TGATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTGGAAAAATAACCATAGGTGA
32584352 AATTTGTGTATTTTGGTGTTTTATGATA
651 AATTTGTGTATTTTGGTGTTTTATGATA
*
32584380 CTCTTCAATTCTTTGCTGGAGAACAGAGTCTCTGGCTATTCGATAGAGGTCCCAATCTGTGATTG
1 CTCTTCAATTCTTTGCTGGAGAACAAAGTCTCTGGCTATTCGATAGAGGTCCCAATCTGTGATTG
* * *
32584445 TTGTAACATCCCGAAATAGGGCCTAAATGGAACAGTGGTTGTGAAACCACAAATCTGAGGTAGAA
66 TTGTAACATCCCGAAATAGGGCCTAAACGGAACAGTGGTTGCGAAACCACAAACCTGAGGTAGAA
* *
32584510 AATTTATTTTATTATTATTTTTAGGTTCATGATATGATTGCATGATGGTGTGAAAATTTCGTGAT
131 AATTTATTTTATTATTATTTTGA-GTTCATGATATGATTGCATAATGGTGTGAAAATTTCGTGAT
*
32584575 GAAATTCTATGCATAAAGTGCTTAAGTTGAGATTATGGACTAAATCAAATAATTTGCAAAACTTG
195 GAAATTCTATGCATAAAGTGCTTAAGTTGAGATTAGGGACTAAATCAAATAATTTGCAAAACTTG
32584640 CATTCTAAAAGTTTTTAGTATGAAATTGCTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATT
260 CATTCTAAAAGTTTTTAGTATGAAATTGCTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATT
*
32584705 TGACCAATTTCTAAGTCTATGGGA-AAAAGTTGGACATGGATGGGATTTTTGGAAAGTTTAGTAG
325 TGACCAATTTCTAAGTCTAT-GGACAAAAGTTGGACATGGATGGAATTTTTGGAAAGTTTAGTAG
*
32584769 TAAGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGT
389 TAAGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAAATTTTGT
* *
32584834 CCATCTTCTTCATTAGGGCGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTTA
454 CCATCTTCTTCATTAGGACGAAATTTCAACGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTTA
*
32584899 AACTCCATAGTAAGTGATTCTAAGCCCCATTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAA
519 AACTCCATAGTAAGTGATTCCAAGCCCCATTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAA
*
32584964 CTTGATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTGGAAAAATACCCATAGGT
584 CTTGATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTGGAAAAATAACCATAGGT
32585029 GAAATTTGTGTATTTTGGTGTTTTATGATA
649 GAAATTTGTGTATTTTGGTGTTTTATGATA
32585059 GAATATGAGG
Statistics
Matches: 658, Mismatches: 19, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
678 147 0.22
679 508 0.77
680 3 0.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (678 bp):
CTCTTCAATTCTTTGCTGGAGAACAAAGTCTCTGGCTATTCGATAGAGGTCCCAATCTGTGATTG
TTGTAACATCCCGAAATAGGGCCTAAACGGAACAGTGGTTGCGAAACCACAAACCTGAGGTAGAA
AATTTATTTTATTATTATTTTGAGTTCATGATATGATTGCATAATGGTGTGAAAATTTCGTGATG
AAATTCTATGCATAAAGTGCTTAAGTTGAGATTAGGGACTAAATCAAATAATTTGCAAAACTTGC
ATTCTAAAAGTTTTTAGTATGAAATTGCTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTT
GACCAATTTCTAAGTCTATGGACAAAAGTTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTA
AGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAAATTTTGTCC
ATCTTCTTCATTAGGACGAAATTTCAACGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTTTAAA
CTCCATAGTAAGTGATTCCAAGCCCCATTTTTAATGATCTTTACGTTTTTGGAGTCCCGATAACT
TGATTAAGCTTATTCTAGCAATAATTCAACCTAGGGTTCATATTTGGAAAAATAACCATAGGTGA
AATTTGTGTATTTTGGTGTTTTATGATA
Found at i:32585738 original size:55 final size:54
Alignment explanation
Indices: 32585651--32585905 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
32585641 ATTAGGGTTT
*
32585651 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAA-GTTTCTAAGGC
* * * * * *
32585706 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATATGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTCTA-A-GGC
* *
32585761 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTC-TAAGGC
* * *
32585814 AAGGCTACCATGTAAGACCATGTCAAGGCATGGGAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTCTAAGGC
* * *
32585863 AAGGATACCACGTAAGACCATGACAAGCCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAG
32585906 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 38 0.22
52 6 0.04
53 41 0.24
54 15 0.09
55 65 0.38
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTCTAAGGC
Found at i:32585857 original size:108 final size:110
Alignment explanation
Indices: 32585661--32585858 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
32585651 AAGGATACCG
*
32585661 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
32585726 TGTCAAGACATGGCATTGATAAGTTACTATATGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATATGGCAAAGGTCCCA
* **
32585771 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
* * *
32585833 ATGTCAAGGCATGGGAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
32585859 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATATGGCAAAGGTCCCA
Found at i:32586118 original size:16 final size:16
Alignment explanation
Indices: 32586097--32586127 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32586087 ATAAAGTTGA
32586097 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
32586113 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
32586128 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:32593415 original size:53 final size:53
Alignment explanation
Indices: 32593232--32593486 Score: 218
Period size: 55 Copynumber: 4.8 Consensus size: 53
32593222 ATTAGTGTTT
* *
32593232 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * * *
32593287 AAGGAAATCATGTAAGACCATGTCAAAAAATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
32593342 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGCTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
32593395 AAGGCTACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
32593444 AAGGATACCACGTAAGACCATGACAAGCCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
32593487 GTACCCGTGT
Statistics
Matches: 164, Mismatches: 30, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 8 0.05
53 42 0.26
54 8 0.05
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:32593438 original size:108 final size:110
Alignment explanation
Indices: 32593242--32593439 Score: 276
Period size: 108 Copynumber: 1.8 Consensus size: 110
32593232 AAGGATACCG
* *
32593242 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCA
* *
32593307 TGTCAAAAAATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAAAAATGACAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
32593352 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-CTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAGACC
* * *
32593414 ATGTCAAGACATGACAATGGTAAGTT
65 ATGTCAAAAAATGACAATGATAAGTT
32593440 TCAAAAGGAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 2 0.03
108 44 0.57
109 7 0.09
110 24 0.31
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAAAAATGACAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:32593699 original size:16 final size:16
Alignment explanation
Indices: 32593678--32593708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32593668 ATAAATTTGA
32593678 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
32593694 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
32593709 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:32595654 original size:25 final size:26
Alignment explanation
Indices: 32595626--32595679 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
32595616 TAATTAGTAT
*
32595626 AAAATATT-AATAATTCAAT-AAATTG
1 AAAA-ATTAAATAATTAAATAAAATTG
32595651 AAAAATTAAATAATTAAATAAAATTG
1 AAAAATTAAATAATTAAATAAAATTG
32595677 AAA
1 AAA
32595680 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 3 0.12
25 14 0.54
26 9 0.35
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAAATTAAATAATTAAATAAAATTG
Found at i:32596461 original size:16 final size:15
Alignment explanation
Indices: 32596436--32596469 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32596426 AAAGTTGATA
*
32596436 ATAATTAATATATATT
1 ATAATAAATATA-ATT
32596452 ATAATAAATATAATT
1 ATAATAAATATAATT
32596467 ATA
1 ATA
32596470 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:32600452 original size:30 final size:30
Alignment explanation
Indices: 32600418--32600478 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32600408 TCCTTAACTC
32600418 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
32600448 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
32600478 A
1 A
32600479 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:32603144 original size:24 final size:24
Alignment explanation
Indices: 32603099--32603170 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
32603089 CAAACTCCCT
** *
32603099 TAATCCTCTCCTACAATCTCTCCA
1 TAATCCTCTCCTTGATTCTCTCCA
* *
32603123 TAATCCTCTCCTTGATTTTCTCCC
1 TAATCCTCTCCTTGATTCTCTCCA
* *
32603147 CAATCCTCTCCATGATTCTCTCCA
1 TAATCCTCTCCTTGATTCTCTCCA
32603171 CAAATCACTC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.19, C:0.40, G:0.03, T:0.38
Consensus pattern (24 bp):
TAATCCTCTCCTTGATTCTCTCCA
Found at i:32611444 original size:48 final size:48
Alignment explanation
Indices: 32611368--32611643 Score: 232
Period size: 46 Copynumber: 5.9 Consensus size: 48
32611358 TACATATCGA
* * * *
32611368 TGCCGATGCCATATCCTAGATATGGTCTTACATTGGCTCTCATATATCCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATATCCG
* *
32611418 TGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCCG
* * * *
32611466 TGCTGATGCATGTCCTC-GACATGTCTTACACTAGCACATC-TCT-T---
1 TGCCGATGCATGTCC-CAGACATGTCTTACACTGGCTC-TCATATATCCG
** * *
32611510 AACCGATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCT-CG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCCG
* * * **
32611555 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCT-T-AA
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCCG
* * *
32611602 TGTCGATGCATGTCCCAAACATGTCTTACACTGGCTCACATA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA
32611644 ACAGCAATGT
Statistics
Matches: 186, Mismatches: 30, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 29 0.16
46 69 0.37
47 3 0.02
48 60 0.32
49 14 0.08
50 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (48 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCCG
Found at i:32611529 original size:92 final size:93
Alignment explanation
Indices: 32611423--32611643 Score: 283
Period size: 92 Copynumber: 2.4 Consensus size: 93
32611413 ATCCGTGCCA
* * *
32611423 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCG-TGCTGATGCATGTCCTC-GAC
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATAT-CGAGGCCGATGCATGTCC-CAGAC
32611486 ATGTCTTACACTAGCACATC-TCTTAA-CCG
64 ATGTCTTACACTAGCAC-TCATCTTAAGCCG
* *
32611515 ATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCTCGAGGCCGATGCATGTCCCAGACAT
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCGAGGCCGATGCATGTCCCAGACAT
* *
32611578 GTCTTACACTAGCTCTCATCTTAATGTCG
66 GTCTTACACTAGCACTCATCTTAA-GCCG
* *
32611607 ATGCATGTCCCAAACATGTCTTACACTGGCTCACATA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA
32611644 ACAGCAATGT
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
89 5 0.04
90 42 0.38
91 1 0.01
92 62 0.55
94 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.29
Consensus pattern (93 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCGAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTCATCTTAAGCCG
Found at i:32620967 original size:43 final size:42
Alignment explanation
Indices: 32620919--32621058 Score: 122
Period size: 44 Copynumber: 3.3 Consensus size: 42
32620909 TCTTAGACGT
* **
32620919 GGTCTTAGATGTAATCAAATACCGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATA-CGATGCCAATGTCCCAGACAG
*** * *
32620962 GGTCTTACACAAAATCAAATACGATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCAAATACGATGCCAATGTCCCAGACAG
* * *
32621004 GGTCTTACATGTAAATCATAAGT-CAACGCCAATGTCCCAGA-TG
1 GGTCTTACATGT-AATCA-AA-TACGATGCCAATGTCCCAGACAG
32621047 TGGTCTTACATG
1 -GGTCTTACATG
32621059 ATAACACAGT
Statistics
Matches: 77, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
42 26 0.34
43 22 0.29
44 28 0.36
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATGCCAATGTCCCAGACAG
Found at i:32621002 original size:42 final size:43
Alignment explanation
Indices: 32620931--32621012 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
32620921 TCTTAGATGT
**
32620931 AATCAAATACCGATGCCTCTGTCCCAGACAGGGTCTTACACAA
1 AATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACACAA
* *
32620974 AATCAAATA-CGATGCCAATGTCCTAGACATGGTCTTACA
1 AATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACA
32621013 TGTAAATCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
AATCAAATACCGATGCCAATGTCCCAGACAGGGTCTTACACAA
Found at i:32627793 original size:42 final size:43
Alignment explanation
Indices: 32627739--32627854 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 43
32627729 TTTAGTATCA
* * * *
32627739 ATGCCTCTGTCCCAGACAGGGTCTTACATG-AAA-TCAGATACG
1 ATGCCTATGTCCCAGACACGGTCTTACACGTAAACTCAAAT-CG
32627781 ATGCCTATGTCCCAGAC-CTGGTCTTACACGTAAATCTCAAATCG
1 ATGCCTATGTCCCAGACAC-GGTCTTACACGTAAA-CTCAAATCG
* *
32627825 AGGCCTGTGTCCCAGACACGGTCTTACACG
1 ATGCCTATGTCCCAGACACGGTCTTACACG
32627855 ATATCTCAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
42 26 0.41
43 3 0.05
44 28 0.44
45 6 0.10
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACACGGTCTTACACGTAAACTCAAATCG
Found at i:32635080 original size:79 final size:81
Alignment explanation
Indices: 32634977--32635161 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
32634967 GCTCCTCGTT
* *
32634977 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
32635040 GGATTTTGTAAC-TCGCA
64 GGATATGGTAACTTAGCA
* *
32635057 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAATCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
32635121 ATATGGTCACTTAGCA
66 ATATGGTAACTTAGCA
32635137 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32635162 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATGGTAACTTAGCA
Found at i:32635161 original size:40 final size:40
Alignment explanation
Indices: 32634977--32635161 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
32634967 GCTCCTCGTT
* *
32634977 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
32635017 CAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
32635057 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
** * * *
32635096 CAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32635137 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32635162 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32637999 original size:20 final size:20
Alignment explanation
Indices: 32637976--32638014 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32637966 TCCAGCGCAA
*
32637976 TTCAGCTCATTTGAGCTCAT
1 TTCAACTCATTTGAGCTCAT
**
32637996 TTCAACTTGTTTGAGCTCA
1 TTCAACTCATTTGAGCTCA
32638015 ACCGAGCTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (20 bp):
TTCAACTCATTTGAGCTCAT
Found at i:32644300 original size:31 final size:31
Alignment explanation
Indices: 32644262--32644325 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
32644252 CCTTTTCATA
32644262 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
32644293 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
32644324 TT
1 TT
32644326 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:32644643 original size:25 final size:25
Alignment explanation
Indices: 32644534--32644641 Score: 132
Period size: 25 Copynumber: 4.4 Consensus size: 25
32644524 CTAGAGGCCT
* *
32644534 AGCCTCTTTTAAT-AACTGGGG-TAA
1 AGCC-CTTTTGATAAACTGGGGCAAA
32644558 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
32644583 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
32644608 AGCCCTTTTTGGTAAACTGGGGC-AT
1 AGCCC-TTTTGATAAACTGGGGCAAA
32644633 AGCCCTTTT
1 AGCCCTTTT
32644642 TGCACTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.09
24 16 0.21
25 37 0.49
26 15 0.20
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:32644714 original size:20 final size:20
Alignment explanation
Indices: 32644691--32644735 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
32644681 ATGAATACAA
32644691 CATGTGCATATCATA-CATAT
1 CATGTGCATATCATATCA-AT
32644711 CATGTGCATATCATATCAAT
1 CATGTGCATATCATATCAAT
32644731 CATGT
1 CATGT
32644736 ATATCAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
CATGTGCATATCATATCAAT
Found at i:32655167 original size:26 final size:25
Alignment explanation
Indices: 32655096--32655178 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
32655086 CTGGAGGCCT
32655096 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
32655120 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
** *
32655145 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCAAA
32655171 A-CCCTTTT
1 AGCCCTTTT
32655179 TGCACTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 8 0.15
24 13 0.25
25 18 0.34
26 14 0.26
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:32655249 original size:20 final size:20
Alignment explanation
Indices: 32655226--32655272 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
32655216 TTATGAATAC
32655226 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
32655245 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
32655266 ATCATGT
1 ATCATGT
32655273 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:32661682 original size:42 final size:43
Alignment explanation
Indices: 32661627--32661741 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 43
32661617 TTTAGTATCG
* * *
32661627 ATGCCTCTATCCCAGACAGGGTCTTACACA-AAA-TCAAATACA
1 ATGCCTATGTCCCAGACACGGTCTTACACATAAACTCAAAT-CA
* * *
32661669 ATGCCTATGTCCCAAACATGGTCTTACACATAAATCTCAAATCG
1 ATGCCTATGTCCCAGACACGGTCTTACACATAAA-CTCAAATCA
*
32661713 AGGCCTATGTCCCAGACACGGTCTTACAC
1 ATGCCTATGTCCCAGACACGGTCTTACAC
32661742 GATATCTCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 26 0.42
43 3 0.05
44 27 0.44
45 6 0.10
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACACGGTCTTACACATAAACTCAAATCA
Found at i:32662017 original size:22 final size:22
Alignment explanation
Indices: 32661992--32662035 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32661982 ATCTAATACA
32661992 ATTCAAATTCA-ACAATTCAATC
1 ATTC-AATTCATACAATTCAATC
* *
32662014 ATTCATTTCATTCAATTCAATC
1 ATTCAATTCATACAATTCAATC
32662036 CATATACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATTCAATTCATACAATTCAATC
Done.