Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 106 of 332
Found at i:34062959 original size:12 final size:12
Alignment explanation
Indices: 34062942--34062982 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
34062932 GTTTCTTTTG
34062942 TTTCAATTTCTT
1 TTTCAATTTCTT
34062954 TTTCAATTTCTT
1 TTTCAATTTCTT
34062966 TTTC-ATCTTCTT
1 TTTCAAT-TTCTT
34062978 TTTCA
1 TTTCA
34062983 CTCTCAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTCAATTTCTT
Found at i:34063029 original size:30 final size:30
Alignment explanation
Indices: 34062958--34063040 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
34062948 TTTCTTTTTC
* *
34062958 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
34062989 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
34063018 ATTTTCTTTTTCTTTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
34063041 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.12, C:0.22, G:0.01, T:0.65
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:34063058 original size:12 final size:12
Alignment explanation
Indices: 34063043--34063073 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
34063033 TTCTTTTTGC
34063043 TTTTCAAAGGCT
1 TTTTCAAAGGCT
34063055 TTTTCAAAGGCT
1 TTTTCAAAGGCT
34063067 TTTTCAA
1 TTTTCAA
34063074 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:34063131 original size:5 final size:5
Alignment explanation
Indices: 34063121--34063177 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
34063111 CTCTTGCCTC
*
34063121 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
34063168 TCTTT TCTTT
1 TCTTT TCTTT
34063178 ATTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:34063161 original size:15 final size:14
Alignment explanation
Indices: 34063121--34063177 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
34063111 CTCTTGCCTC
*
34063121 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
34063136 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
34063151 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
34063168 TCTTTTCTTT
1 TCTTTTCTTT
34063178 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:34063187 original size:21 final size:20
Alignment explanation
Indices: 34063119--34063188 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
34063109 GCCTCTTGCC
34063119 TCTCTTTTCTTTTTATTTCATTT
1 TCTCTTTTC-TTTT-TTT-ATTT
**
34063142 TCT-TTTTCTTCTTTTGCTTT
1 TCTCTTTTCTT-TTTTTATTT
34063162 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTT-TTTATTT
34063182 TCTCTTT
1 TCTCTTT
34063189 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 9 0.23
22 7 0.18
23 3 0.08
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (20 bp):
TCTCTTTTCTTTTTTTATTT
Found at i:34068942 original size:30 final size:30
Alignment explanation
Indices: 34068908--34069004 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
34068898 AGCTCACTCC
34068908 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
34068938 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
34068968 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
34068998 TAGCTCA
1 TAGCTCA
34069005 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:34077212 original size:40 final size:40
Alignment explanation
Indices: 34077161--34077277 Score: 155
Period size: 39 Copynumber: 3.0 Consensus size: 40
34077151 GTGCATTTAA
34077161 GGTACCAAAGTACAAAAAAGGGCACATATGTGCATTCAGG
1 GGTACCAAAGTACAAAAAAGGGCACATATGTGCATTCAGG
** * * *
34077201 GGTACTGAAGTATAAATAAGGG-ACGTATGTGCATTCAGG
1 GGTACCAAAGTACAAAAAAGGGCACATATGTGCATTCAGG
* * *
34077240 GGTACCAAAGTACAAACAGGGGCACATATGTGTATTCA
1 GGTACCAAAGTACAAAAAAGGGCACATATGTGCATTCA
34077278 TCAATAATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 33 0.52
40 31 0.48
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.21
Consensus pattern (40 bp):
GGTACCAAAGTACAAAAAAGGGCACATATGTGCATTCAGG
Found at i:34079546 original size:30 final size:30
Alignment explanation
Indices: 34079511--34079584 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
34079501 AGTTTTTCCC
34079511 AGCTCGATTT-AGCTCACAT-GAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATCGAGCTTAATTT
* *
34079541 AGCTCGTTTGAGCTCAATCTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATCGAGCTTAATTT
34079571 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
34079585 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 5 0.12
30 35 0.88
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATCGAGCTTAATTT
Found at i:34081113 original size:10 final size:11
Alignment explanation
Indices: 34081083--34081112 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34081073 TTCGTAACGT
*
34081083 AAAAAAAAGTC
1 AAAAAAAAATC
34081094 AAAAAAAAATC
1 AAAAAAAAATC
34081105 AAAAAAAA
1 AAAAAAAA
34081113 TTGAGTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.83, C:0.07, G:0.03, T:0.07
Consensus pattern (11 bp):
AAAAAAAAATC
Found at i:34081230 original size:15 final size:15
Alignment explanation
Indices: 34081200--34081251 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 15
34081190 AAAAAAATTC
34081200 AAAAAA-AAG-GAAA
1 AAAAAAGAAGTGAAA
34081213 AAAAAAGAAGTGACAA
1 AAAAAAGAAGTGA-AA
* *
34081229 AAAAATG-AGTTAAA
1 AAAAAAGAAGTGAAA
34081243 AAAAAAGAA
1 AAAAAAGAA
34081252 AAAAAAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
13 6 0.19
14 11 0.34
15 7 0.22
16 8 0.25
ACGTcount: A:0.75, C:0.02, G:0.15, T:0.08
Consensus pattern (15 bp):
AAAAAAGAAGTGAAA
Found at i:34083953 original size:6 final size:6
Alignment explanation
Indices: 34083920--34084027 Score: 58
Period size: 6 Copynumber: 17.7 Consensus size: 6
34083910 AAAGAAATTG
* * * ** *
34083920 AAAG-A AAACAA AAAGAA AACGAA GAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * *
34083967 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA ACTGAAG-A AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A---AAGAA AAAGAA AA-AGAA
34084018 AAAGAA AAAG
1 AAAGAA AAAG
34084028 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 24, Indels: 11
0.68 0.22 0.10
Matches are distributed among these distances:
5 6 0.08
6 57 0.78
7 5 0.07
8 2 0.03
9 3 0.04
ACGTcount: A:0.69, C:0.05, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:34083981 original size:18 final size:18
Alignment explanation
Indices: 34083924--34083982 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
34083914 AAATTGAAAG
* *
34083924 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAATCGA
* * *
34083942 AGAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAATCGA
34083960 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAATCGA
34083978 AAAAG
1 AAAAG
34083983 TGAGAGAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.71, C:0.07, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCGA
Found at i:34084079 original size:33 final size:33
Alignment explanation
Indices: 34084042--34084104 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
34084032 AAAAGAAATT
34084042 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
34084075 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
34084105 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:34085900 original size:20 final size:20
Alignment explanation
Indices: 34085877--34085930 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
34085867 AGTTTTTCCC
*
34085877 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
34085897 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
34085917 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
34085931 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:34085912 original size:30 final size:30
Alignment explanation
Indices: 34085877--34085950 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
34085867 AGTTTTTCCC
34085877 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
34085907 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
34085937 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
34085951 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:34085940 original size:20 final size:20
Alignment explanation
Indices: 34085877--34085941 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
34085867 AGTTTTTCCC
* * * *
34085877 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
34085897 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
34085916 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
34085937 AGCTC
1 AGCTC
34085942 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:34091357 original size:15 final size:15
Alignment explanation
Indices: 34091337--34091384 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
34091327 TCAAAGATGG
34091337 GTTTATGGATATAAA
1 GTTTATGGATATAAA
* * **
34091352 GTTTATGTAGATGGA
1 GTTTATGGATATAAA
34091367 -TTTATGGATATAAA
1 GTTTATGGATATAAA
34091381 GTTT
1 GTTT
34091385 TTGTAGGTTT
Statistics
Matches: 24, Mismatches: 8, Indels: 2
0.71 0.24 0.06
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATAAA
Found at i:34091363 original size:29 final size:29
Alignment explanation
Indices: 34091331--34091390 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
34091321 AAGGATTCAA
*
34091331 AGATGGGTTTATGGATATAAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
34091360 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
34091389 AG
1 AG
34091391 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.27, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:34093126 original size:15 final size:15
Alignment explanation
Indices: 34093106--34093170 Score: 60
Period size: 15 Copynumber: 4.3 Consensus size: 15
34093096 GATAATCAGA
34093106 AAATCCAAGATAGAG
1 AAATCCAAGATAGAG
*
34093121 AAATCCAAGACAGAG
1 AAATCCAAGATAGAG
** **
34093136 AAGCCCGGGATA-ATG
1 AAATCCAAGATAGA-G
*
34093151 AAATCCAAGATAAAG
1 AAATCCAAGATAGAG
34093166 AAATC
1 AAATC
34093171 TATGGTAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.51, C:0.17, G:0.20, T:0.12
Consensus pattern (15 bp):
AAATCCAAGATAGAG
Found at i:34110905 original size:32 final size:32
Alignment explanation
Indices: 34110869--34110929 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
34110859 ATCTCACGAA
34110869 CTCGGACTCAACTCAACGAGTTCGGACATCGT
1 CTCGGACTCAACTCAACGAGTTCGGACATCGT
34110901 CTCGGACTCAACTCAACGAGTTCGGACAT
1 CTCGGACTCAACTCAACGAGTTCGGACAT
34110930 TCGCATCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (32 bp):
CTCGGACTCAACTCAACGAGTTCGGACATCGT
Found at i:34115005 original size:15 final size:15
Alignment explanation
Indices: 34114985--34115020 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
34114975 TAAAAAAAAT
*
34114985 AAAAAAAAATTTGAA
1 AAAAAAAAATTCGAA
34115000 AAAAAAAAATTCGAA
1 AAAAAAAAATTCGAA
34115015 AAAAAA
1 AAAAAA
34115021 TAAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.14
Consensus pattern (15 bp):
AAAAAAAAATTCGAA
Found at i:34120258 original size:19 final size:19
Alignment explanation
Indices: 34120234--34120273 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34120224 AGCTCCCATG
34120234 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
34120253 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
34120272 TA
1 TA
34120274 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:34122092 original size:10 final size:10
Alignment explanation
Indices: 34122077--34122102 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
34122067 GTATTCGGTC
34122077 ACTTTGTGGA
1 ACTTTGTGGA
34122087 ACTTTGTGGA
1 ACTTTGTGGA
34122097 ACTTTG
1 ACTTTG
34122103 AGCCATCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (10 bp):
ACTTTGTGGA
Found at i:34123914 original size:22 final size:21
Alignment explanation
Indices: 34123881--34123922 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
34123871 TCAAACCTAC
34123881 ACAAGCATGCAAAATTTACACA
1 ACAAGCATGCAAAA-TTACACA
*
34123903 ACAAGGCA-GCAACATTACAC
1 ACAA-GCATGCAAAATTACAC
34123923 CACTATCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 9 0.50
23 3 0.17
ACGTcount: A:0.48, C:0.26, G:0.12, T:0.14
Consensus pattern (21 bp):
ACAAGCATGCAAAATTACACA
Found at i:34124533 original size:6 final size:6
Alignment explanation
Indices: 34124512--34124584 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
34124502 CTCGATCTCT
* * ** **
34124512 TTTTTC CTTCTC TTTTTC TTTTTC ACTTTC TTTTTC AATTTC ATTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC
34124561 TTTTTC TTATTCTC TTTTTGC TTT
1 TTTTTC TT-TT-TC TTTTT-C TTT
34124585 CTTTCCCACT
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
6 35 0.69
7 12 0.24
8 4 0.08
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTTTC
Found at i:34124533 original size:18 final size:18
Alignment explanation
Indices: 34124512--34124568 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
34124502 CTCGATCTCT
34124512 TTTTTC-CTTCTCTTTTTC
1 TTTTTCACTT-TCTTTTTC
34124530 TTTTTCACTTTCTTTTTC
1 TTTTTCACTTTCTTTTTC
** *
34124548 AATTTCATTTTTCTTTTTC
1 TTTTTCA-CTTTCTTTTTC
34124567 TT
1 TT
34124569 ATTCTCTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 19 0.59
19 13 0.41
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTCACTTTCTTTTTC
Found at i:34124612 original size:9 final size:9
Alignment explanation
Indices: 34124598--34124622 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
34124588 TCCCACTCTT
34124598 TTTCTTTTG
1 TTTCTTTTG
34124607 TTTCTTTTG
1 TTTCTTTTG
34124616 TTTCTTT
1 TTTCTTT
34124623 CAAATTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (9 bp):
TTTCTTTTG
Found at i:34124632 original size:34 final size:35
Alignment explanation
Indices: 34124558--34124632 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 35
34124548 AATTTCATTT
**
34124558 TTCTTTTTCTTATTCTCTTTTTGCTTTCTTTCCCA
1 TTCTTTTTCTTATTCTCTTTTTGCTTTCTTTCAAA
* * *
34124593 CTCTTTTTCTT-TTGTTTCTTTTG-TTTCTTTCAAA
1 TTCTTTTTCTTATTCTCT-TTTTGCTTTCTTTCAAA
34124627 TTCTTT
1 TTCTTT
34124633 CTCACTTGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.07, C:0.21, G:0.04, T:0.68
Consensus pattern (35 bp):
TTCTTTTTCTTATTCTCTTTTTGCTTTCTTTCAAA
Found at i:34126699 original size:10 final size:10
Alignment explanation
Indices: 34126684--34126709 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
34126674 GTATTCGGTC
34126684 ACTTTGTGGA
1 ACTTTGTGGA
34126694 ACTTTGTGGA
1 ACTTTGTGGA
34126704 ACTTTG
1 ACTTTG
34126710 AGCCATCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (10 bp):
ACTTTGTGGA
Found at i:34127137 original size:20 final size:20
Alignment explanation
Indices: 34127091--34127138 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
34127081 AGTAAGCTCG
34127091 GTTGAGCTCAAACAAGCTGA
1 GTTGAGCTCAAACAAGCTGA
*** **
34127111 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACAAGCTGA
34127131 GTTGAGCT
1 GTTGAGCT
34127139 GGACAGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACAAGCTGA
Found at i:34127167 original size:20 final size:20
Alignment explanation
Indices: 34127120--34127168 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
34127110 AAACGAGCTC
34127120 AAATGAGCTGAGTTGAGCTGG
1 AAATGAGCTGAG-TGAGCTGG
*
34127141 ACA-GAGCTCGAG-GAGCTGG
1 AAATGAGCT-GAGTGAGCTGG
34127160 AAATGAGCT
1 AAATGAGCT
34127169 AGGATCAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 9 0.38
20 10 0.42
21 5 0.21
ACGTcount: A:0.31, C:0.14, G:0.37, T:0.18
Consensus pattern (20 bp):
AAATGAGCTGAGTGAGCTGG
Found at i:34129620 original size:46 final size:46
Alignment explanation
Indices: 34129553--34129642 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
34129543 TCATGTCAAC
34129553 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCAAT
1 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCAAT
34129599 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCA
1 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCA
34129643 CATACTTGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.34
Consensus pattern (46 bp):
TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCAAT
Found at i:34133171 original size:30 final size:31
Alignment explanation
Indices: 34133137--34133233 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
34133127 AGCTCACTCC
*
34133137 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
34133167 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
34133197 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
34133227 TAGCTCA
1 TAGCTCA
34133234 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:34134930 original size:12 final size:11
Alignment explanation
Indices: 34134913--34134942 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34134903 ATACAAGTTT
34134913 AAAAAAAACCG
1 AAAAAAAACCG
*
34134924 AAAAAAAATCG
1 AAAAAAAACCG
34134935 AAAAAAAA
1 AAAAAAAA
34134943 GTGATTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.10, G:0.07, T:0.03
Consensus pattern (11 bp):
AAAAAAAACCG
Found at i:34135880 original size:6 final size:5
Alignment explanation
Indices: 34135856--34135912 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
34135846 AAGAGAAAAT
*
34135856 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGAA AAAGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAG-A AAAGA AA-AGA
34135903 AAAGA AAAGA
1 AAAGA AAAGA
34135913 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 16 0.36
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:34135905 original size:25 final size:25
Alignment explanation
Indices: 34135860--34135908 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
34135850 GAAAATAAAG
34135860 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAAGAAAAA-CAAAAGAAGA
*
34135886 AAAAGAAAAAGAAATA-AAAAGAA
1 AAAAG-AAAAGAAAAACAAAAGAA
34135909 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGAAAAACAAAAGAAGA
Found at i:34136015 original size:30 final size:31
Alignment explanation
Indices: 34135981--34136062 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
34135971 TTTGAAAAGC
*
34135981 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* * *
34136011 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* *
34136041 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAAAGAAAAAGAAAT
34136063 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
Found at i:34136035 original size:24 final size:24
Alignment explanation
Indices: 34135986--34136055 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
34135976 AAAGCAAAAA
*
34135986 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
34136010 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAA-TT
* ** *
34136034 GAGAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
34136056 AAGAAATTGA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 3 0.09
24 28 0.80
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:34138207 original size:30 final size:31
Alignment explanation
Indices: 34138173--34138269 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
34138163 AGCTCACTCC
*
34138173 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
34138203 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
34138233 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
34138263 TAGCTCA
1 TAGCTCA
34138270 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:34148239 original size:30 final size:30
Alignment explanation
Indices: 34148183--34148239 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
34148173 TTTTGGGCCT
* **
34148183 AGGGGTAAAATGGTCATTTTGTCAAAGTCA
1 AGGGGCAAAATGGTCATTTTACCAAAGTCA
*
34148213 AGGGGCAAAATGGTTATTTTACCAAAG
1 AGGGGCAAAATGGTCATTTTACCAAAG
34148240 AGGTGGATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTACCAAAGTCA
Found at i:34148646 original size:47 final size:47
Alignment explanation
Indices: 34148571--34148698 Score: 172
Period size: 47 Copynumber: 2.7 Consensus size: 47
34148561 GGGTTATCGT
* *
34148571 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGTA
* *
34148617 GAGCCAGTGTAAGACCATGTCTGGTACATGGCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGTA
34148666 -AGCCAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
34148699 ACTATGAGAT
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
46 19 0.26
47 26 0.36
48 26 0.36
49 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGTA
Found at i:34157357 original size:27 final size:27
Alignment explanation
Indices: 34157327--34157502 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
34157317 ATATTGAGTC
* * * *
34157327 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
34157354 CGCACACTTAGTGC-ACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
34157380 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
** * *
34157407 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
34157434 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
34157461 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34157488 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34157503 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.18
27 103 0.81
28 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:34157491 original size:81 final size:80
Alignment explanation
Indices: 34157348--34157501 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 80
34157338 TGCTATATAA
* * *
34157348 TCAACTCGCACACTTAGTGCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAACTCGCACA
1 TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACA
34157413 CTTAGTGCCGCATGG
66 CTTAGTGCCGCATGG
* * **
34157428 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
34157493 ACTTAGTGC
65 ACTTAGTGC
34157502 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
80 20 0.30
81 46 0.70
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACA
CTTAGTGCCGCATGG
Found at i:34165361 original size:27 final size:27
Alignment explanation
Indices: 34165331--34165508 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34165321 ATATTAAGTC
* * *
34165331 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
34165358 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
34165386 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
34165413 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
34165440 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
34165467 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
34165494 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34165509 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:34165415 original size:55 final size:54
Alignment explanation
Indices: 34165331--34165508 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
34165321 ATATTAAGTC
* * *
34165331 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
34165386 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
34165440 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
34165494 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34165509 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:34165497 original size:81 final size:82
Alignment explanation
Indices: 34165352--34165507 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
34165342 TGCTATATAA
* *
34165352 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
34165417 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
34165434 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
34165497 ACACTTAGTGC
65 ACACTTAGTGC
34165508 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:34173654 original size:15 final size:15
Alignment explanation
Indices: 34173634--34173664 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
34173624 TAAGACCACG
34173634 TTTAATACGTTGGTA
1 TTTAATACGTTGGTA
34173649 TTTAATACGTTGGTA
1 TTTAATACGTTGGTA
34173664 T
1 T
34173665 CGATATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.48
Consensus pattern (15 bp):
TTTAATACGTTGGTA
Found at i:34173735 original size:56 final size:56
Alignment explanation
Indices: 34173649--34173868 Score: 352
Period size: 56 Copynumber: 3.9 Consensus size: 56
34173639 TACGTTGGTA
34173649 TTTAATACGTTGGTATCGATATGTGATTCTGATATATGTCTGCAAGTAAGACCACG
1 TTTAATACGTTGGTATCGATATGTGATTCTGATATATGTCTGCAAGTAAGACCACG
34173705 TTTAATACGTTGGTATCGATATGTGATTCTGATATATGTCTGCAAGTAAGACCACG
1 TTTAATACGTTGGTATCGATATGTGATTCTGATATATGTCTGCAAGTAAGACCACG
* * * *
34173761 TTTAATACGTT-GTCATCTATATGTGATTCTGATATATGTGTGCGAGTAAGACCACA
1 TTTAATACGTTGGT-ATCGATATGTGATTCTGATATATGTCTGCAAGTAAGACCACG
* * * *
34173817 TTCAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGAC
1 TTTAATACGTTGGTATCGATATGTGATTCTGATATATGTCTGCAAGTAAGAC
34173869 TGTTTGGGAC
Statistics
Matches: 155, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
55 2 0.01
56 152 0.98
57 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (56 bp):
TTTAATACGTTGGTATCGATATGTGATTCTGATATATGTCTGCAAGTAAGACCACG
Found at i:34175598 original size:12 final size:12
Alignment explanation
Indices: 34175581--34175608 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
34175571 GCCTTATTAC
34175581 AATCCAGTCTAT
1 AATCCAGTCTAT
34175593 AATCCAGTCTAT
1 AATCCAGTCTAT
34175605 AATC
1 AATC
34175609 ACTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (12 bp):
AATCCAGTCTAT
Found at i:34176277 original size:21 final size:20
Alignment explanation
Indices: 34176251--34176300 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
34176241 AGTAAGTTTC
34176251 AAAAAAAAATTCGAAAAAAAT
1 AAAAAAAAATT-GAAAAAAAT
* *
34176272 AAAAAAAAGTTTAAAAAAAT
1 AAAAAAAAATTGAAAAAAAT
34176292 AGAAAAAAA
1 A-AAAAAAA
34176301 CCTTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (20 bp):
AAAAAAAAATTGAAAAAAAT
Found at i:34181755 original size:63 final size:65
Alignment explanation
Indices: 34181621--34181755 Score: 154
Period size: 67 Copynumber: 2.1 Consensus size: 65
34181611 TATGAACTTG
*
34181621 ATTTAATAGATGCTTCTTTAAATAAACTAGTTACTGGGATAATTTAGTGATGCATGAGTTAAAGT
1 ATTTAATAGATGCTTCTTTAAATAAACTAGTTACTGGGATAA--TAGTGATGCATAAGTTAAAGT
34181686 TC
64 TC
* * *
34181688 ATTTAATA-ATGCTTCTATTAATTAAACTAGTTGCT-GGATTAA-A-TGATGCATAAGTGT-TAG
1 ATTTAATAGATGCTTCT-TTAAATAAACTAGTTACTGGGA-TAATAGTGATGCATAAGT-TAAAG
34181748 TTC
63 TTC
34181751 ATTTA
1 ATTTA
34181756 TTTAAGTTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
63 21 0.34
64 2 0.03
66 11 0.18
67 27 0.44
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (65 bp):
ATTTAATAGATGCTTCTTTAAATAAACTAGTTACTGGGATAATAGTGATGCATAAGTTAAAGTTC
Found at i:34183280 original size:29 final size:29
Alignment explanation
Indices: 34183240--34183321 Score: 103
Period size: 29 Copynumber: 2.9 Consensus size: 29
34183230 GGCCCGATCT
* *
34183240 CATTTATATGGCCTATCAGGCCCAATTCA
1 CATTCATATGGCCAATCAGGCCCAATTCA
* *
34183269 CATTCATATGGCCCATCAGGCCTAATTCA
1 CATTCATATGGCCAATCAGGCCCAATTCA
* *
34183298 TATTCATAT-GCCAATTAGGCCCAA
1 CATTCATATGGCCAATCAGGCCCAA
34183322 ATCTCCTTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 12 0.26
29 34 0.74
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CATTCATATGGCCAATCAGGCCCAATTCA
Found at i:34188372 original size:18 final size:19
Alignment explanation
Indices: 34188336--34188384 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
34188326 CCTGCCCAGG
34188336 ACCCCTTGGTGGCATCTGACC
1 ACCCCTTGGTGG-A-CTGACC
*
34188357 ACCCCTTGGTGG-CTGAGC
1 ACCCCTTGGTGGACTGACC
34188375 ACCACCTTGG
1 ACC-CCTTGG
34188385 CCCACTACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 8 0.31
19 6 0.23
21 12 0.46
ACGTcount: A:0.14, C:0.37, G:0.27, T:0.22
Consensus pattern (19 bp):
ACCCCTTGGTGGACTGACC
Found at i:34191010 original size:29 final size:27
Alignment explanation
Indices: 34190938--34191043 Score: 106
Period size: 29 Copynumber: 3.7 Consensus size: 27
34190928 ACATACATGC
*
34190938 ATATGACCCACTT-GGCCCAATTTCATTT
1 ATATGGCCCA-TTAGGCCCAA-TTCATTT
*
34190966 ATATGGCCCATCAGGCCCAATTCATATT
1 ATATGGCCCATTAGGCCCAATTCAT-TT
* *
34190994 CATATGGCTCATTAGGCCCAAATCACCTTT
1 -ATATGGCCCATTAGGCCCAATTCA--TTT
*
34191024 ATATGGCCCGTTAGGCCCAA
1 ATATGGCCCATTAGGCCCAA
34191044 ATAAACTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
27 6 0.09
28 18 0.27
29 39 0.59
30 2 0.03
31 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (27 bp):
ATATGGCCCATTAGGCCCAATTCATTT
Found at i:34191044 original size:29 final size:29
Alignment explanation
Indices: 34190961--34191045 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
34190951 GGCCCAATTT
* *
34190961 CATTTATATGGCCCATCAGGCCCAATTCA
1 CATTTATATGGCCCATTAGGCCCAAATCA
* * *
34190990 TATTCATATGGCTCATTAGGCCCAAATCA
1 CATTTATATGGCCCATTAGGCCCAAATCA
* *
34191019 CCTTTATATGGCCCGTTAGGCCCAAAT
1 CATTTATATGGCCCATTAGGCCCAAAT
34191046 AAACTTATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CATTTATATGGCCCATTAGGCCCAAATCA
Found at i:34197434 original size:56 final size:56
Alignment explanation
Indices: 34197361--34197594 Score: 342
Period size: 56 Copynumber: 4.2 Consensus size: 56
34197351 TTGTGATCAT
* * *
34197361 GAGTAAGACCGCATTTAATACGTTGGCATTGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* * * *
34197417 GAGTAAGACCACGTTTAATACGTTGGCATTGATAAGTGATTCTGATATATATGTGT
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* * *
34197473 GAGTAAGACGACGCTTAAAACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* * * *
34197529 GAGTAAGACCACGTTTAATGCATTAGCATCGATATGTGATTCTGATATATGTGTGT
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
34197585 GAGTAAGACC
1 GAGTAAGACC
34197595 CTGTTTGGGA
Statistics
Matches: 159, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 159 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (56 bp):
GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
Found at i:34202447 original size:37 final size:37
Alignment explanation
Indices: 34202396--34202475 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
34202386 AAGGAGGTGT
* *
34202396 CACTATATATCACAAATTCCTTACCCAACTCTGGTTG
1 CACTAAATAACACAAATTCCTTACCCAACTCTGGTTG
34202433 CACTAAATAACACAAATTCCTTACCCAACTCTGGTTG
1 CACTAAATAACACAAATTCCTTACCCAACTCTGGTTG
34202470 CACTAA
1 CACTAA
34202476 CACTGGGGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.34, C:0.30, G:0.07, T:0.29
Consensus pattern (37 bp):
CACTAAATAACACAAATTCCTTACCCAACTCTGGTTG
Found at i:34206877 original size:46 final size:46
Alignment explanation
Indices: 34206781--34206902 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 46
34206771 CATTTCGTAG
* * * *
34206781 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGA
* * *
34206827 CCGATGAATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAATA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAGA
*
34206873 CCGATGCCATGCCCCAGACATGGTCTTACA
1 CCGATG-CATGTCCCAGACAT-GTCTTACA
34206903 ATGGCTCTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 43 0.68
47 12 0.19
48 8 0.13
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGA
Found at i:34210894 original size:13 final size:13
Alignment explanation
Indices: 34210878--34210921 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
34210868 GGACACATTA
*
34210878 CCGTGTCACATGG
1 CCGTGTCGCATGG
34210891 CCGTGTCGCAT-G
1 CCGTGTCGCATGG
*
34210903 CCATGTCGCATGG
1 CCGTGTCGCATGG
*
34210916 TCGTGT
1 CCGTGT
34210922 GTCACACACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.11, C:0.30, G:0.32, T:0.27
Consensus pattern (13 bp):
CCGTGTCGCATGG
Found at i:34218881 original size:40 final size:40
Alignment explanation
Indices: 34218776--34218963 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
34218766 TCCAAACACA
* * *
34218776 AATGCCTTCGGGACTTAGCCTGGATATAAC-ACCCGTACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACG
* * ** *
34218815 AGTACCTTCGAAACTTGGCCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACG
* * *
34218855 AATGCCTTCAGGACTTAGCCCAGATATAACAACCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACG
*
34218895 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACG
*
34218935 AATGCCTTCGGGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
34218964 TCCTCAATTA
Statistics
Matches: 128, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 24 0.19
40 104 0.81
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACG
Found at i:34226271 original size:27 final size:27
Alignment explanation
Indices: 34226235--34226632 Score: 499
Period size: 27 Copynumber: 14.7 Consensus size: 27
34226225 TACTGAAATG
* * * *
34226235 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
34226262 CCATTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226289 CCATCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
34226316 CCTTTGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226343 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226370 CCATCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
34226397 CCCTTGATTTATAGAAGTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226424 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226451 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
34226478 CTCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226505 CCCTTGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
34226532 CCCTCGATTTATAGAATTACCGTGTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * * **
34226559 CTCTCAATTTACAAAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
34226586 CCCTCGATTTACAGAACTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
34226613 CCCTCGATTTACAGAATTAC
1 CCCTCGATTTATAGAATTAC
34226633 TAAAATACCC
Statistics
Matches: 324, Mismatches: 47, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 324 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:34226641 original size:27 final size:26
Alignment explanation
Indices: 34226584--34226811 Score: 108
Period size: 27 Copynumber: 8.5 Consensus size: 26
34226574 ATTACTGTTT
* ****
34226584 TACCCTCGATTTACAGAACTACCGTTT
1 TACCCTCGATTTACA-AATTACCAAAA
*
34226611 TACCCTCGATTTACAGAATTACTAAAA
1 TACCCTCGATTTACA-AATTACCAAAA
*
34226638 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTAC-AAATTACCAAAA
* *
34226665 TATCCTGGATTAGTA-AAATTACCAAAA
1 TACCCTCGATT--TACAAATTACCAAAA
* * *
34226692 TACCCCTGGTTTGTA-AAATTACTAAAA
1 TA-CCCTCGATT-TACAAATTACCAAAA
* *
34226719 TACCCCTAGTTTGTA-AAATTACCAAAA
1 TA-CCCTCGATT-TACAAATTACCAAAA
* *
34226746 TACCCCTGGCTTGTA-AAATTACCAAAA
1 TA-CCCTCGATT-TACAAATTACCAAAA
* * *
34226773 TACCC-CTGATTTATGAAATTATCGAAA
1 TACCCTC-GATTTA-CAAATTACCAAAA
*
34226800 TACTCTCGATTT
1 TACCCTCGATTT
34226812 GTAAAATATC
Statistics
Matches: 169, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
25 2 0.01
26 7 0.04
27 148 0.88
28 10 0.06
29 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACCAAAA
Found at i:34226685 original size:54 final size:54
Alignment explanation
Indices: 34226627--34226860 Score: 201
Period size: 54 Copynumber: 4.4 Consensus size: 54
34226617 CGATTTACAG
* * * ** * *
34226627 AATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATA-TCCTGGATTAGTAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAG-TTAGTAA
* *
34226681 AATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTAGTAA
* * *
34226735 AATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGATTTA-TGA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTAGTAA
* * * * * * *
34226789 AATTATCGAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCT-G-TATGATAG
1 AATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTAGTTA-G-TAA
*
34226842 AATTACCGAAATACCCCTG
1 AATTACCAAAATACCCCTG
34226861 TAAGGTCGAA
Statistics
Matches: 147, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
50 2 0.01
53 30 0.20
54 108 0.73
55 7 0.05
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTAGTAA
Found at i:34226792 original size:81 final size:80
Alignment explanation
Indices: 34226613--34226860 Score: 245
Period size: 81 Copynumber: 3.1 Consensus size: 80
34226603 TACCGTTTTA
* * * ** *
34226613 CCCTCGATTTACAGAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATA-TCCTGGATTA
1 CCCT-GATTTATAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGG-TT-
34226677 GTAAAATTACCAAAATAC
63 GTAAAATTACCAAAATAC
* *
34226695 CCCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCTTGT
1 CCCTGATTTATAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGG-TTGT
34226760 AAAATTACCAAAATAC
65 AAAATTACCAAAATAC
* * * * * *
34226776 CCCTGATTTATGAAATTA-TCGAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCT-GTAT
1 CCCTGATTTATAAAATTACT-AAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGGT-T
* *
34226837 GATAGAATTACCGAAATAC
63 G-TAAAATTACCAAAATAC
34226856 CCCTG
1 CCCTG
34226861 TAAGGTCGAA
Statistics
Matches: 142, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 3 0.02
80 38 0.27
81 89 0.63
82 11 0.08
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
CCCTGATTTATAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTGTA
AAATTACCAAAATAC
Found at i:34226861 original size:27 final size:27
Alignment explanation
Indices: 34226681--34227063 Score: 278
Period size: 27 Copynumber: 14.3 Consensus size: 27
34226671 GGATTAGTAA
* * *
34226681 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTATGGTAG
** * *
34226708 AATTACTAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTATGGTAG
* ** * *
34226735 AATTACCAAAATACCCCTGGCTTGTAA
1 AATTACCGAAATACCCCTGTATGGTAG
* *
34226762 AATTACCAAAATACCCCTG-AT-TTATG
1 AATTACCGAAATACCCCTGTATGGTA-G
* * *
34226788 AAATTATCGAAATA-CTCTCG-ATTTGTA-
1 -AATTACCGAAATACCCCT-GTA-TGGTAG
* * *
34226815 AAATATCGAAATACCCCTGTATGATAG
1 AATTACCGAAATACCCCTGTATGGTAG
* *
34226842 AATTACCGAAATACCCCTGTAAGGTCG
1 AATTACCGAAATACCCCTGTATGGTAG
*
34226869 AATTACC-AAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTATGGTAG
** * *
34226895 AATTACTAAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTATGGTAG
* *
34226922 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTATGGTAG
* *
34226949 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTATGGTAG
* * *
34226976 AATTACCGAAATACCCTTGTAAGGTAA
1 AATTACCGAAATACCCCTGTATGGTAG
* * *
34227003 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTATGGTAG
* * ** *
34227030 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTATGGTAG
34227057 AATTACC
1 AATTACC
34227064 ATTTTGCCCT
Statistics
Matches: 305, Mismatches: 41, Indels: 20
0.83 0.11 0.05
Matches are distributed among these distances:
25 2 0.01
26 44 0.14
27 256 0.84
28 1 0.00
29 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTATGGTAG
Found at i:34226953 original size:54 final size:54
Alignment explanation
Indices: 34226821--34227064 Score: 319
Period size: 54 Copynumber: 4.5 Consensus size: 54
34226811 TGTAAAATAT
* * * * *
34226821 CGAAATACCCCTGTATGATAGAATTACCGAAATACCCCTGTAAGGTCGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* *
34226875 C-AAATACCCCTGTAGGGTAGAATTACTAAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* **
34226928 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* * * *
34226982 CGAAATACCCTTGTAAGGTAAAAATACCAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* * * *
34227036 CGAGATACCCTTGTGGGGTAAAATTACCA
1 CGAAATACCCCTGTAGGGTAGAATTACCA
34227065 TTTTGCCCTT
Statistics
Matches: 168, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 45 0.27
54 123 0.73
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (54 bp):
CGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
Found at i:34227073 original size:27 final size:27
Alignment explanation
Indices: 34227043--34227106 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
34227033 TACCGAGATA
*
34227043 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * *
34227070 CCCTTAG-GGTGTTAAATGACTATTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
*
34227097 CCCTTATGGG
1 CCCTTGTGGG
34227107 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:34227337 original size:24 final size:25
Alignment explanation
Indices: 34227266--34227335 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
34227256 AGGAAGTGCT
* * *
34227266 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
34227291 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
34227316 AAAAGAGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
34227336 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:34227542 original size:42 final size:42
Alignment explanation
Indices: 34227483--34227574 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
34227473 TAGTCTCCCC
34227483 AAATGGGCTTGCATACATTC-ATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACA-TCGATTGACATTACATGTGATATTG
34227525 AAATGGGCTTGCATACATCGATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCGATTGACATTACATGTGATATTG
34227567 AAATGGGC
1 AAATGGGC
34227575 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 2 0.04
42 47 0.96
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCGATTGACATTACATGTGATATTG
Found at i:34227636 original size:31 final size:32
Alignment explanation
Indices: 34227598--34227681 Score: 138
Period size: 31 Copynumber: 2.7 Consensus size: 32
34227588 TGTTTACAGT
*
34227598 AAAGGCTTCAGCCCAGTGATATGATTTAT-GA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGGA
34227629 AAAGGCTTCGGCCCAGTGATATGATTTATGGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGGA
34227661 AAA-GCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
34227682 TCAAGACTAA
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
30 5 0.10
31 41 0.80
32 5 0.10
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGGA
Found at i:34229286 original size:17 final size:17
Alignment explanation
Indices: 34229227--34229286 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
34229217 GAGACAGCCA
* * *
34229227 CCATACATGCACTTAAG
1 CCATTCATGCATTTAAT
34229244 CCATTCATGCATTCT-AT
1 CCATTCATGCATT-TAAT
*
34229261 -CATCCCATGCATTTAAT
1 CCAT-TCATGCATTTAAT
34229278 CCATTCATG
1 CCATTCATG
34229287 GACTAGACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.12
17 26 0.76
18 4 0.12
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (17 bp):
CCATTCATGCATTTAAT
Found at i:34229717 original size:30 final size:30
Alignment explanation
Indices: 34229683--34229779 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
34229673 TAAACTAAAA
34229683 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * *
34229713 TGAGCTGAGGC-TAAACTCTTAAGCTAAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* * *
34229743 TGAGATAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
34229773 TGAGCTA
1 TGAGCTA
34229780 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 41 0.82
31 7 0.14
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:34239964 original size:12 final size:12
Alignment explanation
Indices: 34239947--34240001 Score: 69
Period size: 12 Copynumber: 4.7 Consensus size: 12
34239937 ACGGTATTGT
34239947 AAAAAAAA-T-A
1 AAAAAAAATTCA
*
34239957 AAAAAAAACTTGA
1 AAAAAAAA-TTCA
*
34239970 AAAAAAAATTCG
1 AAAAAAAATTCA
34239982 AAAAAAAATTCA
1 AAAAAAAATTCA
34239994 AAAAAAAA
1 AAAAAAAA
34240002 GTTTGTATTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
10 8 0.21
12 22 0.56
13 9 0.23
ACGTcount: A:0.78, C:0.05, G:0.04, T:0.13
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:34240107 original size:29 final size:29
Alignment explanation
Indices: 34240045--34240114 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 29
34240035 TAGTATTGAA
** *
34240045 GAAAAAAAAGAAGAAAAAAAATTCGGAATT
1 GAAAAAAAA-AAGAAAAAAAAACCGAAATT
34240075 --AAAAAAAAAGAAAAAAAAACCGAAATT
1 GAAAAAAAAAAGAAAAAAAAACCGAAATT
34240102 GAAAAAAAAAAGA
1 GAAAAAAAAAAGA
34240115 GTGATTGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 17 0.49
28 7 0.20
29 11 0.31
ACGTcount: A:0.74, C:0.04, G:0.13, T:0.09
Consensus pattern (29 bp):
GAAAAAAAAAAGAAAAAAAAACCGAAATT
Found at i:34246934 original size:9 final size:9
Alignment explanation
Indices: 34246905--34246934 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
34246895 TGATTTTTAC
34246905 AATTCAAAT
1 AATTCAAAT
*
34246914 AACTCAAAT
1 AATTCAAAT
34246923 AATTCAAAT
1 AATTCAAAT
34246932 AAT
1 AAT
34246935 AGATTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (9 bp):
AATTCAAAT
Found at i:34247037 original size:19 final size:18
Alignment explanation
Indices: 34247015--34247057 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
34247005 AATACAAAAA
*
34247015 AAAAATTAAAATAATTTTT
1 AAAAATTAAAAT-ATTTAT
*
34247034 AAAATTTAAAATATTTAT
1 AAAAATTAAAATATTTAT
34247052 AAAAAT
1 AAAAAT
34247058 CCCAAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAATTAAAATATTTAT
Found at i:34247096 original size:19 final size:18
Alignment explanation
Indices: 34247061--34247137 Score: 73
Period size: 18 Copynumber: 4.1 Consensus size: 18
34247051 TAAAAATCCC
* *
34247061 AAAATTTATATTTTTAAA
1 AAAATTTAAAATTTTAAA
34247079 AAAATTATAAAATTTTAAA
1 AAAATT-TAAAATTTTAAA
*
34247098 AAAATTTCTAAAATTATAAA
1 AAAA-TT-TAAAATTTTAAA
* * *
34247118 GAAAGTGAAAATTTTAAA
1 AAAATTTAAAATTTTAAA
34247136 AA
1 AA
34247138 TTTTCTAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
18 17 0.35
19 15 0.31
20 16 0.33
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (18 bp):
AAAATTTAAAATTTTAAA
Found at i:34247099 original size:20 final size:20
Alignment explanation
Indices: 34247070--34247117 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
34247060 CAAAATTTAT
*
34247070 ATTTTTAAAAAAATTATAAA
1 ATTTTAAAAAAAATTATAAA
* *
34247090 ATTTTAAAAAAATTTCTAAA
1 ATTTTAAAAAAAATTATAAA
*
34247110 ATTATAAA
1 ATTTTAAA
34247118 GAAAGTGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTTAAAAAAAATTATAAA
Found at i:34253156 original size:29 final size:29
Alignment explanation
Indices: 34253123--34253200 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
34253113 GTCATATTCT
* **
34253123 ATACAAGTCTTTAATATGTCTT-AGCTTAA
1 ATACATGT-TTTAATATGTCTTAAAATTAA
34253152 ATACATGTTATTAATATGTCTTAAAATTAA
1 ATACATGTT-TTAATATGTCTTAAAATTAA
34253182 A-ACATGTTTTTAATATGTC
1 ATACATG-TTTTAATATGTC
34253201 CTAGTGCAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
28 1 0.02
29 34 0.79
30 8 0.19
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.44
Consensus pattern (29 bp):
ATACATGTTTTAATATGTCTTAAAATTAA
Found at i:34255649 original size:43 final size:43
Alignment explanation
Indices: 34255602--34255718 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
34255592 TAACACATAT
*
34255602 CGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGAT-TAA
1 CGATGCCACTGTCCCAGACATGGTCTTACACGAAATC-ATATAA
* * *
34255645 CGATGTCGA-TGTCCCAGACATGGTCTTACAAGTAATCATATAA
1 CGATG-CCACTGTCCCAGACATGGTCTTACACGAAATCATATAA
* *
34255688 TGATGCC-CATGTCCCAAACATGGTCTTACAC
1 CGATGCCAC-TGTCCCAGACATGGTCTTACAC
34255719 ATAATTAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
42 3 0.05
43 57 0.92
44 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
CGATGCCACTGTCCCAGACATGGTCTTACACGAAATCATATAA
Found at i:34264403 original size:28 final size:28
Alignment explanation
Indices: 34264353--34264454 Score: 127
Period size: 28 Copynumber: 3.6 Consensus size: 28
34264343 TGTGGTCCAC
* *
34264353 TAGGCCCAATCTC-TTTCAAATGGCCCAT
1 TAGGCCCAATCACATTT-ATATGGCCCAT
*
34264381 TAGGCCCATTCACATTTATATGGCCCAT
1 TAGGCCCAATCACATTTATATGGCCCAT
* *
34264409 TAGGCCCAATCACATTCATATGG-CCAC
1 TAGGCCCAATCACATTTATATGGCCCAT
34264436 TAGGCCCAAATCACATTTA
1 TAGGCCC-AATCACATTTA
34264455 CAGTCATGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 10 0.15
28 52 0.80
29 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TAGGCCCAATCACATTTATATGGCCCAT
Found at i:34264681 original size:8 final size:8
Alignment explanation
Indices: 34264668--34264702 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
34264658 GTAGCCAAAC
34264668 TTTCGGCA
1 TTTCGGCA
34264676 TTTCGGCA
1 TTTCGGCA
*
34264684 TTTCGGCT
1 TTTCGGCA
*
34264692 TTTCGGGA
1 TTTCGGCA
34264700 TTT
1 TTT
34264703 TTCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.09, C:0.20, G:0.26, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:34267812 original size:37 final size:37
Alignment explanation
Indices: 34267762--34267837 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
34267752 TTCAAGACTA
*
34267762 ACTTAAAAATTTATCCATTTTTGCATAGCTTAAATAT
1 ACTTAAAAATTTATCCATTTTCGCATAGCTTAAATAT
34267799 ACTTAAAAATTTATCCATTTTCGCATAGCTTAAATAT
1 ACTTAAAAATTTATCCATTTTCGCATAGCTTAAATAT
34267836 AC
1 AC
34267838 ATTCATTTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (37 bp):
ACTTAAAAATTTATCCATTTTCGCATAGCTTAAATAT
Found at i:34276987 original size:93 final size:92
Alignment explanation
Indices: 34276829--34276998 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
34276819 GCCCCTAAGT
*
34276829 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
34276894 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
34276921 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34276986 CGAGTTCGGATGC
65 CGAGTTCGGATGC
34276999 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:34277450 original size:30 final size:30
Alignment explanation
Indices: 34277416--34277475 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34277406 ATTTAATACG
34277416 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
34277446 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
34277476 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:34284507 original size:47 final size:47
Alignment explanation
Indices: 34284393--34284562 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
34284383 GCCCCTAAGT
* * * *
34284393 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
34284439 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
34284486 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
34284531 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
34284563 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:34284562 original size:92 final size:93
Alignment explanation
Indices: 34284393--34284562 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
34284383 GCCCCTAAGT
* *
34284393 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34284458 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
34284486 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34284550 CGAGTTCGGATGC
66 CGAGTTCGGATGC
34284563 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:34287246 original size:43 final size:45
Alignment explanation
Indices: 34287170--34287264 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
34287160 AATTTCAGGG
* ** *
34287170 AGATAAGATCTTCAATTTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
*
34287215 AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
34287258 AGATAAG
1 AGATAAG
34287265 GCTTGAGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:34287297 original size:177 final size:176
Alignment explanation
Indices: 34286920--34287311 Score: 483
Period size: 176 Copynumber: 2.2 Consensus size: 176
34286910 GGACTGATGA
* ** * *
34286920 CTTAAATCTACTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTCAATCTGCTCTGCAACT
1 CTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATCTTCAATCTGCGCTGCAACT
*
34286985 GCTTTAGGGAAACAGATCTTCAATCTCCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTAA
66 -CTTCAGGGAAACAGATCTTCAATCTCCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTAA
*
34287050 AATCGCCAACCTGCTCACTTGCTACCTCAGAGAGATAAGGCTAGTGG
130 AATCGCCAACCTGCTCACTTGCTACCTCAGAGAGATAAGGCTAGAGG
* * **
34287097 --TAGAATCTGTTCCATTTCTGATACATGGAGATAAGATTCACCATCTTTGATCTGCCCCGCTGC
1 CTTA-AATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATCTTCAATCTG---CGCTGC
* * *
34287160 AA-T-TTCAGGGAGATA-AGATCTTCAATTTTCAGTCTGCTTTCTTGCTACCTC-AGAAAGATAA
62 AACTCTTCAGGGA-A-ACAGATCTTCAATCTCCAGTCTGCTTCCTTGCTACCTCAAG-AAGATAA
* ** * *
34287221 GACT-CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGAGG
124 GACTAAAATCGCCAACCTGCTCACTTGCTACCTCAGAGAGATAAGGCTAGAGG
*
34287273 CTTAAATCTGCTCCATTGCTGATACATAGAGATAAGATT
1 CTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATT
34287312 TGCCTCTTCC
Statistics
Matches: 184, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
175 2 0.01
176 94 0.51
177 77 0.42
178 4 0.02
179 7 0.04
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (176 bp):
CTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATCTTCAATCTGCGCTGCAACT
CTTCAGGGAAACAGATCTTCAATCTCCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTAAA
ATCGCCAACCTGCTCACTTGCTACCTCAGAGAGATAAGGCTAGAGG
Found at i:34287466 original size:146 final size:146
Alignment explanation
Indices: 34287177--34287466 Score: 424
Period size: 146 Copynumber: 2.0 Consensus size: 146
34287167 GGGAGATAAG
* *
34287177 ATCTTCAATTTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
1 ATCTTCAATCTTCAGTCTGCTTTCTTGCTACCCCAGAAAGATAAGACTCAATCTTCAACCTGCTC
* * *
34287242 TCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCTGCTCCATTGCTGATACATAGAGATA
66 TCTTGCAACCTCAGAGAGATAAGGCTGGAGGCTAAAATCTGCTCCATTGCTGATACATAGAGATA
**
34287307 AGATTTGCCTCTTCCA
131 AGATTCACCTCTTCCA
* * *
34287323 ATCTTCAATCTTCAGTCTGCTTTCTTGTTACCCCAGAAAGATAAGACTCATTTTTCAACCTGCTC
1 ATCTTCAATCTTCAGTCTGCTTTCTTGCTACCCCAGAAAGATAAGACTCAATCTTCAACCTGCTC
* *
34287388 TTTTGCAACCTTAGAGAGATAAGGCTGGTA-G-TAAAATCTGCTCCATTGCTGATACAT-GAAGA
66 TCTTGCAACCTCAGAGAGATAAGGCTGG-AGGCTAAAATCTGCTCCATTGCTGATACATAG-AGA
34287450 TAAGATTCACCATCTTC
129 TAAGATTCACC-TCTTC
34287467 AATTTGTTTC
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
144 1 0.01
145 37 0.29
146 90 0.70
147 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (146 bp):
ATCTTCAATCTTCAGTCTGCTTTCTTGCTACCCCAGAAAGATAAGACTCAATCTTCAACCTGCTC
TCTTGCAACCTCAGAGAGATAAGGCTGGAGGCTAAAATCTGCTCCATTGCTGATACATAGAGATA
AGATTCACCTCTTCCA
Found at i:34287586 original size:322 final size:322
Alignment explanation
Indices: 34287000--34287633 Score: 794
Period size: 322 Copynumber: 2.0 Consensus size: 322
34286990 AGGGAAACAG
*
34287000 ATCTTCAATCTCCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTAAAATCGCCAACCTGCT
1 ATCTTCAATCTCCAGTCTGCTTCCTTGCTACCCCAAGAAGATAAGACTAAAATCGCCAACCTGCT
* * * * * *
34287065 CACTTGCTACCTCAGAGAGATAAGGCTAGTGGTAGAATCTGTTCCATTTCTGATACATGGAGATA
66 CACTTGCAACCTCAGAGAGATAAGGCTAGTAGTAAAATCTGCTCCATTGCTGATACATGAAGATA
** * * * *
34287130 AGATTCACCATCTTTGATCTGCCCCGCTGCAATTTCAGGGAGATAAGATCTTCAATTTTCAGTCT
131 AGATTCACCATCTTCAATCTGCCCCGATGC-ATTTCAGGGAGATAAAATCCTCAATCTTCAGTCT
* * **
34287195 GCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAG
195 GCTTCCTTGCCACCTCAGAAAGATAAGACTCAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAG
* * * *
34287260 ATAAGG-C-TTGAGGCTTAAATCTGCTCCATTGCTGATACATAGAGATAAGATTTGCCTCTTCCA
260 ATAAGGTCAAT-A-GCTAAAATCTGCTCCATTACCGATACATAGAGATAAGATTTGCCTCTTCCA
* * * * * ***
34287323 ATCTTCAATCTTCAGTCTGCTTTCTTGTTACCCC-AGAAAGATAAGACT-CATTTTTCAACCTGC
1 ATCTTCAATCTCCAGTCTGCTTCCTTGCTACCCCAAG-AAGATAAGACTAAAATCGCCAACCTGC
** * *
34287386 TCTTTTGCAACCTTAGAGAGATAAGGCTGGTAGTAAAATCTGCTCCATTGCTGATACATGAAGAT
65 TCACTTGCAACCTCAGAGAGATAAGGCTAGTAGTAAAATCTGCTCCATTGCTGATACATGAAGAT
* ***
34287451 AAGATTCACCATCTTCAATTTGTTTC-ATAGC-TTCTCAGGGAGATAAAATCCTCAATCTTCAGT
130 AAGATTCACCATCTTCAATCTGCCCCGAT-GCATT-TCAGGGAGATAAAATCCTCAATCTTCAGT
* * *
34287514 CTGCTTCCTTGCCACCTTAGGAAGATAAGACTACAATCGCCAACTTGCTCTCTTGCTACCTCAGA
193 CTGCTTCCTTGCCACCTCAGAAAGATAAGACT-CAATCGCCAACCTGCTCTCTTGCTACCTCAGA
*
34287579 GAGATAAGGTCAATAGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATT
257 GAGATAAGGTCAATAGCTAAAATCTGCTCCATTACCGATACATAGAGATAAGATT
34287634 CGTCATCCTC
Statistics
Matches: 264, Mismatches: 41, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
320 2 0.01
321 55 0.21
322 163 0.62
323 43 0.16
324 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (322 bp):
ATCTTCAATCTCCAGTCTGCTTCCTTGCTACCCCAAGAAGATAAGACTAAAATCGCCAACCTGCT
CACTTGCAACCTCAGAGAGATAAGGCTAGTAGTAAAATCTGCTCCATTGCTGATACATGAAGATA
AGATTCACCATCTTCAATCTGCCCCGATGCATTTCAGGGAGATAAAATCCTCAATCTTCAGTCTG
CTTCCTTGCCACCTCAGAAAGATAAGACTCAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGA
TAAGGTCAATAGCTAAAATCTGCTCCATTACCGATACATAGAGATAAGATTTGCCTCTTCCA
Found at i:34288022 original size:180 final size:180
Alignment explanation
Indices: 34287720--34288072 Score: 530
Period size: 180 Copynumber: 2.0 Consensus size: 180
34287710 AGAAGATGGC
* * * *
34287720 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTAAAGCTTAAATTTGCTCCATTGCCGATA
1 CAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTAAAGCTAAAATCTACTCCATTGCCGATA
* * *
34287785 CATGGAGATAAGATTCATCATCTATGAATATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTT
66 CATGGAGATAAGATTCACCATATATGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTT
*
34287850 CAATTCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTT
131 CAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTT
* *** * *
34287900 CAACCTGCTCTCTTACTACGTCAGAGAGATAAGGCTTGGTGGTAAAATCTATTCCATTGCCGATA
1 CAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTAAAGCTAAAATCTACTCCATTGCCGATA
*
34287965 CATGGAGATAAGATTCACCATATGTGAAGATCTGC-CCTGCTGCAA-TCTCAGGGAGATAAAATC
66 CATGGAGATAAGATTCACCATATATGAAGATCTGCTCC-GCTGCAACT-TCAGGGAGATAAAATC
*
34288028 TTCAATTCTCAGTCTGTTTCCTTGCTACCTCAGGAAGATAAGACT
129 TTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
34288073 ATTATCACCA
Statistics
Matches: 155, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
179 3 0.02
180 152 0.98
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (180 bp):
CAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTAAAGCTAAAATCTACTCCATTGCCGATA
CATGGAGATAAGATTCACCATATATGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTT
CAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTT
Found at i:34288279 original size:660 final size:662
Alignment explanation
Indices: 34286923--34288355 Score: 1636
Period size: 660 Copynumber: 2.1 Consensus size: 662
34286913 CTGATGACTT
* * * * *
34286923 AAATCTACTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTCAATCTGCTCTGCAACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGC-
* *
34286988 TTAGGGA-A-ACAGATCTTCAATCTCCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTAAA
65 TTAGGGAGATA-AGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAAGAAGAT-AG------
** * * *
34287051 ATCGCCAACCTGCTCACTTGCTACCTCAGAGAGATAAGGCTAGTGGTAGAATCTGTTCCATTTCT
122 A--GCCAACCTGCTCACTTGCTACCTCAGAGAGATAAGGCTAAAGGTAGAATCTGCTCCATTGCC
* * *
34287116 GATACATGGAGATAAGATTCACCATCTTTGATCTGCCCCGCTGCAATTTCAGGGAGATAAGATCT
185 GATACATGGAGATAAGATTCACCATCTATGATCTGCCCCGCTGCAACTTCAGGGAGATAAAATCT
*
34287181 TCAATTTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTCTCTT
250 TCAATTTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTCTCTT
* * * *
34287246 GCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCTGCTCCATTGCTGATACATAGAGATAAGAT
315 ACTACCTCAGAGAGATAAGGCTTGAGGCTAAAATCTACTCCATTGCCGATACATAGAGATAAGAT
* ** * * ** * *
34287311 TTGCCTCTTCCAATCTTCAATCTTCAGTCTGCTTTCTTGTTACCCCAGAAAGATAAGACTCATTT
380 TTGCCTCAT-C-ATCTGAAATCTT-AGTC-GCCTGCTTGCAACCCCAGAAAGATAAAACTCAATT
* * * *
34287376 TTCAACCTGCTCTTTTGCAACCTTAGAGAGATAAGGCTGGTAGTAAAATCTGCTCCATTGCTGAT
441 CTCAACCTGCTCTTTTGCAACCTCAGAGAGATAAGACTAGTAGTAAAATCTGCTCCATTGCTGAT
* * * * *
34287441 ACATGAAGATAAGATTCACCATCTTCAATTTGTTTCATAGCTTCTCAGGGAGATAAAATCCTCAA
506 ACATGAAGATAAGATTCACCATCTTCAATCTGCTCCATAGCTGCTCAGAGAGATAAAATCCTCAA
* * * *
34287506 TCTTCAGTCTGCTTCCTTGCCACCTTAGGAAGATAAGACTACAATCGCCAACTTGCTCTCTTGCT
571 TCTCCAGTCTGCTTCCTTACCACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCT
*
34287571 ACCTCAGAGAGATAAGGTCAATAGCTA
636 ACCTCAAAGAGATAAGGTCAATAGCTA
* * *
34287598 AAATCTGCTCCATTACCGATACATGGAGATAAGATTCGTCATCCTCGATCTGCTCCGCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCT
34287663 TAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAAGAAGAT-G-GCCAACCT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAAGAAGATAGAGCCAACCT
* * *
34287726 GCTCTCTTGCTACCTCAGAGAGATAAGGCTTAAAGCTTA-AATTTGCTCCATTGCCGATACATGG
131 GCTCACTTGCTACCTCAGAGAGATAAGGC-TAAAG-GTAGAATCTGCTCCATTGCCGATACATGG
* *
34287790 AGATAAGATTCATCATCTATGAATATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATT
194 AGATAAGATTCACCATCTATG---ATCTGCCCCGCTGCAACTTCAGGGAGATAAAATCTTCAATT
* *
34287855 CTT-AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTACTAC
256 -TTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTCTCTTACTAC
* * * *
34287919 GTCAGAGAGATAAGGCTTG-GTGGTAAAATCTATTCCATTGCCGATACATGGAGATAAGA-TT-C
320 CTCAGAGAGATAAGGCTTGAG-GCTAAAATCTACTCCATTGCCGATACATAGAGATAAGATTTGC
* * * **
34287981 AC-CAT-ATGTGAAGATC-T-G-C-CCTGC-TGCAATCTCAGGGAGATAAAATCTTCAATTCTCA
384 -CTCATCATCTGAA-ATCTTAGTCGCCTGCTTGCAACCCCAGAAAGATAAAA-C-TCAATTCTCA
** * * *
34288039 GTCTG-T-TTCCTTGCTACCTCAG-GAAGATAAGACTATTA-TCACCAATCTGCTCCATTGCTGA
445 ACCTGCTCTT--TTGCAACCTCAGAG-AGATAAGACTAGTAGT-A-AAATCTGCTCCATTGCTGA
* * * ** * *
34288100 TACATGGAGATAAGATTCATCATTTTTGATCTGCTCCACTA-CTGCTTAGAGAGATAAAAT-TTG
505 TACATGAAGATAAGATTCACCATCTTCAATCTGCTCCA-TAGCTGCTCAGAGAGATAAAATCCT-
* * **
34288163 CAAAT-TCCAGTCTGCTTCCTTACTATCTCAGGAAGATAAGACTATC-ATCTTCAACCTGCTCTC
568 C-AATCTCCAGTCTGCTTCCTTACCACCTCAGGAAGATAAGACTA-CAATCGCCAACCTGCTCTC
* *
34288226 TTGCTACCTCAAAGAGATAAGGTCAGTGGCTA
631 TTGCTACCTCAAAGAGATAAGGTCAATAGCTA
* *
34288258 AAATCTGCTCCATTGCCGATACATAGAGATAAGATTCGCCATCTTCGATCTGCTTCGCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCT
*
34288323 TAGGGAGATAAGATCTTCAATCTTCAATCTACT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTACT
34288356 CCACTGCAAC
Statistics
Matches: 650, Mismatches: 86, Indels: 59
0.82 0.11 0.07
Matches are distributed among these distances:
657 16 0.02
658 7 0.01
659 34 0.05
660 235 0.36
661 7 0.01
663 5 0.01
664 39 0.06
665 43 0.07
666 5 0.01
667 4 0.01
668 145 0.22
669 2 0.00
673 1 0.00
674 7 0.01
675 99 0.15
676 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (662 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCT
TAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAAGAAGATAGAGCCAACCT
GCTCACTTGCTACCTCAGAGAGATAAGGCTAAAGGTAGAATCTGCTCCATTGCCGATACATGGAG
ATAAGATTCACCATCTATGATCTGCCCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTTTCAG
TCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTCTCTTACTACCTCAGA
GAGATAAGGCTTGAGGCTAAAATCTACTCCATTGCCGATACATAGAGATAAGATTTGCCTCATCA
TCTGAAATCTTAGTCGCCTGCTTGCAACCCCAGAAAGATAAAACTCAATTCTCAACCTGCTCTTT
TGCAACCTCAGAGAGATAAGACTAGTAGTAAAATCTGCTCCATTGCTGATACATGAAGATAAGAT
TCACCATCTTCAATCTGCTCCATAGCTGCTCAGAGAGATAAAATCCTCAATCTCCAGTCTGCTTC
CTTACCACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCTCAAAGAGATAA
GGTCAATAGCTA
Found at i:34288736 original size:64 final size:64
Alignment explanation
Indices: 34288624--34288745 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 64
34288614 TGAAATGCTC
* * * *
34288624 ATGTCAAACCATTAGGATGCTATAATCGAAATGAATCTAATGCTCCTAACTAGATGTGATACTG
1 ATGTCAAACAATTAGGATGCTATAATCAAAATGAATCTAATGCACCTAACTAAATGTGATACTG
* *
34288688 ATGTCAAATAATTAGGATGCTATTATCAAAATGAATC-AATTGCACCTAACTAAATGTG
1 ATGTCAAACAATTAGGATGCTATAATCAAAATGAATCTAA-TGCACCTAACTAAATGTG
34288746 TTATGAATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
63 2 0.04
64 49 0.96
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (64 bp):
ATGTCAAACAATTAGGATGCTATAATCAAAATGAATCTAATGCACCTAACTAAATGTGATACTG
Found at i:34288807 original size:14 final size:15
Alignment explanation
Indices: 34288779--34288807 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34288769 GTAAAAATGA
34288779 AAATGATCTTTTTTT
1 AAATGATCTTTTTTT
34288794 AAATGATCTTTTTT
1 AAATGATCTTTTTT
34288808 CTTTTTCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (15 bp):
AAATGATCTTTTTTT
Found at i:34289893 original size:12 final size:12
Alignment explanation
Indices: 34289876--34289910 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
34289866 TTTGATTGAT
34289876 TTTTTATTTTTC
1 TTTTTATTTTTC
*
34289888 TTTTTATTTCTC
1 TTTTTATTTTTC
34289900 TTTTTGATTTT
1 TTTTT-ATTTT
34289911 GATTGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.80
Consensus pattern (12 bp):
TTTTTATTTTTC
Found at i:34297426 original size:27 final size:27
Alignment explanation
Indices: 34297387--34297527 Score: 237
Period size: 27 Copynumber: 5.2 Consensus size: 27
34297377 CAATTTGACG
*
34297387 AAATGACTGTTTTTCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
*
34297414 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
34297441 AAATGACTGTTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
*
34297468 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
* *
34297495 AAATGACTGTTTTACCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
34297522 AAATGA
1 AAATGA
34297528 ATGAAATGCC
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGAGGTA
Found at i:34297538 original size:81 final size:81
Alignment explanation
Indices: 34297387--34297575 Score: 227
Period size: 81 Copynumber: 2.3 Consensus size: 81
34297377 CAATTTGACG
* * * * **
34297387 AAATGACTGTTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTT
1 AAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCTTATGAGGTAAAATGAATGAA
* * *
34297452 TTGCCCTTATGA-GGTA
66 ATGCCCCTA-CATGGTA
* *
34297468 AAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTACCCTTATGTGGTAAAATGAATGAA
1 AAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCTTATGAGGTAAAATGAATGAA
34297533 ATGCCCCTACATGGTA
66 ATGCCCCTACATGGTA
* * * *
34297549 AATTGACTATTCTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
34297576 TATGTTTAGA
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 91 0.99
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (81 bp):
AAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTACCCTTATGAGGTAAAATGAATGAA
ATGCCCCTACATGGTA
Found at i:34297548 original size:54 final size:54
Alignment explanation
Indices: 34297387--34297575 Score: 202
Period size: 54 Copynumber: 3.5 Consensus size: 54
34297377 CAATTTGACG
* *
34297387 AAATGACTGTTTTTCCCTTATGAGGTAAAATGACT-ATTTTGCCCTTATGA-GGTA
1 AAATGACTGTTTTGCCCTTATGAGGTAAAATGACTGA-TTTGCCCTTA-CATGGTA
* **
34297441 AAATGACTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTAAAATGACTGATTTGCCCTTACATGGTA
* * * ** *
34297495 AAATGACTGTTTTACCCTTATGTGGTAAAATGAATGAAATGCCCCTACATGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTAAAATGACTGATTTGCCCTTACATGGTA
* * * * *
34297549 AATTGACTATTCTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
34297576 TATGTTTAGA
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 115 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (54 bp):
AAATGACTGTTTTGCCCTTATGAGGTAAAATGACTGATTTGCCCTTACATGGTA
Found at i:34299942 original size:20 final size:20
Alignment explanation
Indices: 34299919--34299984 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
34299909 AGCTCCGTCC
34299919 AGCTCAACTCAGCTTATTTG
1 AGCTCAACTCAGCTTATTTG
*** *
34299939 AGCTCGTTTTAGCTTATTTG
1 AGCTCAACTCAGCTTATTTG
* *
34299959 AACTCAAC-CGAGCTTACTTTC
1 AGCTCAACTC-AGCTTA-TTTG
34299980 AGCTC
1 AGCTC
34299985 TTTCTTTATT
Statistics
Matches: 33, Mismatches: 11, Indels: 3
0.70 0.23 0.06
Matches are distributed among these distances:
20 26 0.79
21 7 0.21
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (20 bp):
AGCTCAACTCAGCTTATTTG
Found at i:34302498 original size:21 final size:20
Alignment explanation
Indices: 34302474--34302529 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
34302464 AAGAAAAAAA
**
34302474 GAAACAAAAGAAAAAGAGTGT
1 GAAA-AAAAGAAAAAGAGAAT
*
34302495 GAAAGAAAGCAAAAAGAGAAT
1 GAAAAAAAG-AAAAAGAGAAT
*
34302516 GAGAAAAAGAAAAA
1 GAAAAAAAGAAAAA
34302530 CAAAATTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.68, C:0.04, G:0.23, T:0.05
Consensus pattern (20 bp):
GAAAAAAAGAAAAAGAGAAT
Found at i:34302580 original size:18 final size:17
Alignment explanation
Indices: 34302518--34302580 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
34302508 AAGAGAATGA
34302518 GAAAAAGAAAAACAAAATT
1 GAAAAAG-AAAA-AAAATT
34302537 -AAAAATGAAAAAGAAATT
1 GAAAAA-GAAAAA-AAATT
**
34302555 GATCAAGAAAAGAAAATT
1 GAAAAAGAAAA-AAAATT
34302573 GAAAAAGA
1 GAAAAAGA
34302581 GAGTGAGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
17 1 0.03
18 30 0.83
19 5 0.14
ACGTcount: A:0.70, C:0.03, G:0.14, T:0.13
Consensus pattern (17 bp):
GAAAAAGAAAAAAAATT
Found at i:34306693 original size:6 final size:5
Alignment explanation
Indices: 34306669--34306723 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
34306659 ACGAGAAAAC
*
34306669 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
34306716 AAAGA AAA
1 AAAGA AAA
34306724 TAGAGGCAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
4 4 0.10
5 23 0.55
6 14 0.33
7 1 0.02
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:34306700 original size:15 final size:14
Alignment explanation
Indices: 34306669--34306723 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 14
34306659 ACGAGAAAAC
34306669 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
34306685 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
34306700 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
34306716 AAAGAAAA
1 AAAGAAAA
34306724 TAGAGGCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 4 0.11
15 10 0.29
16 16 0.46
17 5 0.14
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:34306802 original size:12 final size:12
Alignment explanation
Indices: 34306787--34306826 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
34306777 AAAAGCCTTT
34306787 GAAAAACAAAAA
1 GAAAAACAAAAA
34306799 GAAAAACAAAAA
1 GAAAAACAAAAA
**
34306811 GAAAATGAAAAA
1 GAAAAACAAAAA
34306823 GAAA
1 GAAA
34306827 TTGAGATTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.80, C:0.05, G:0.12, T:0.03
Consensus pattern (12 bp):
GAAAAACAAAAA
Found at i:34306822 original size:7 final size:6
Alignment explanation
Indices: 34306787--34306826 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
34306777 AAAAGCCTTT
* * *
34306787 GAAAAA CAAAAA GAAAAA CAAAAA GAAAAT GAAAAA GAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAA
34306827 TTGAGATTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.80, C:0.05, G:0.12, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:34306840 original size:30 final size:31
Alignment explanation
Indices: 34306806--34306873 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 31
34306796 AAAGAAAAAC
**
34306806 AAAAAGAA-AATGAAAAAGAAATTGAGATTG
1 AAAAAGAAGAATGAAAAAGAAATTGAGAGAG
**
34306836 AAAAA-AAGAATGAAAAAGAGTTTGAGAGAG
1 AAAAAGAAGAATGAAAAAGAAATTGAGAGAG
34306866 AAAAAGAA
1 AAAAAGAA
34306874 TGTGAACAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 2 0.06
30 28 0.88
31 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.13
Consensus pattern (31 bp):
AAAAAGAAGAATGAAAAAGAAATTGAGAGAG
Found at i:34309965 original size:13 final size:13
Alignment explanation
Indices: 34309947--34309975 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34309937 AATAGTTGTG
34309947 TGTTATTTAATTA
1 TGTTATTTAATTA
34309960 TGTTATTTAATTA
1 TGTTATTTAATTA
34309973 TGT
1 TGT
34309976 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:34311571 original size:612 final size:604
Alignment explanation
Indices: 34310499--34311594 Score: 1640
Period size: 612 Copynumber: 1.8 Consensus size: 604
34310489 AAGAAGCTAG
* *
34310499 TATAAATAGTTTGTTGATTTCATTTGTAAAGGACTTTTGCCAAATTTGTTAATGAACATTTGTTC
1 TATAAATAGTTTGTTCATTTCATTTGTAAAGGACTTTTGCCAAATTTGTTAATGAACATTTATTC
*
34310564 TTGTGAGGTTGCTTCCTCTCATATCTCGTACAAGTTTCGAAAGACTTATCTGGCTTGTGCTAGTG
66 TTGTGAGGTTGCTTCCTCTCATATCTCGTACAAGTTTCGAAAGACTTATCTAGCTTGTGCTAGTG
* *
34310629 GCGTCAATCGTCTTGTTTGAACTTATCACCAATCTTGGTGTGGCGTTCACCTATCCATCTATCCA
131 GCGTCAACCGTCTTGTTTGAACTTATCACCAATCTTGGTGTGGCGTTCACCTATCAATCTATCCA
34310694 ACTTCACCTTAACAATATAGGAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTGA
196 ACTTCACCTTAACAATATAGGAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTGA
* * *
34310759 GTTCGTTTTTCCATCCCCCATCTTTCAACTTTCCTTCTTGTAACCAAACCGACCCATTTATCCAT
261 GTTCGTTTTTCCATCCCCCAACTTTCAACTTTCCTTCTTGTAACCAAACCGAACCATCTATCCAT
*
34310824 CACCCATCTTTGCTACACATAACCGGACCTATTACTAAACTTACCCTTCTTGAAACCTTCCACTT
326 CACCCATCTTTGCTACACATAACCGAACCTATTACTAAACTTACCCTTCTTGAAACCTTCCACTT
** * * *
34310889 ATTCTAATCCATTATTTTACTTTTATTACTAAAATCTGAGGCACGAACGACTCTCTCGAACTACG
391 AACCTAATCCATTATTTTACTTTAATTACTAAAATCTGAAGCACAAACGACTCTCTCGAACTACG
34310954 ATCGGGCAACT-ACGTGAATTCGACTCATCTATCCGGGCCGGATCACATCACCTTTAATGATTTA
456 ATCGGGCAACTAAC-TGAATTCGACTCATCTATCCGGGCCGGATCACATCACCTTTAATGATTTA
34311018 TTCTAGAATATTCTAGTGCATTTTTAGCTGAATTTACTTAGTCTTTAAGCTACTAGTTTGTCCAT
520 TTCTAGAATATTCTAGTGCATTTTTAGCTGAATTTACTTAGTCTTTAAGCTACTAGTTTGTCCAT
34311083 TCGGTTACTACATGATAGGT
585 TCGGTTACTACATGATAGGT
34311103 TATAAATAGTTTGTTCATTTCA-TTGTAAGAGGGACTTTTTGCCAAATTTGTTAATGAACA-TTA
1 TATAAATAGTTTGTTCATTTCATTTGTAA-A-GGAC-TTTTGCCAAATTTGTTAATGAACATTTA
*
34311166 TTCTTGTGAGGTTGCTTCCTCTCATATCTCGTACAAGTTTC-AAAGACTTATCTAGTTTGTGCTA
63 TTCTTGTGAGGTTGCTTCCTCTCATATCTCGTACAAGTTTCGAAAGACTTATCTAGCTTGTGCTA
*
34311230 GTGGCGTCTACCGCTCTTGTTTTGAACTTATCACCAATCTTGGTGTGGCGTTCACCTATCAATCT
128 GTGGCGTCAACCG-TCTTG-TTTGAACTTATCACCAATCTTGGTGTGGCGTTCACCTATCAATCT
* *
34311295 ATCCATAATTTTTTTCACCTTAACAATATAGGAATCGGGGTGACACTTCTTAGTGTTGAATCATT
191 ATCC--AA----CTTCACCTTAACAATATAGGAACCGGGGTGACACTTCTTAGTGTTGAATCATT
* * *
34311360 CCTGACGTTGAGTTCG-TTTTCCAT-TCCCAACTTTTAACTTTCTTTCTTGTTAACCCAAACCGA
250 CCTGACGTTGAGTTCGTTTTTCCATCCCCCAACTTTCAACTTTCCTTCTTG-TAA-CCAAACCGA
* * * * * *
34311423 ACCATCTATCCTTCATCCATCTTTGCTACCCTTAACTGAACCTATTGCTAAACTTACCCTTCTTG
313 ACCATCTATCCATCACCCATCTTTGCTACACATAACCGAACCTATTACTAAACTTACCCTTCTTG
* * *
34311488 AAACCTTCCGC-TAACCT-ATCCCTT-TTCATTCACTTCTAATT-TTAAAA-CTCGAAGCACAAA
378 AAACCTTCCACTTAACCTAATCCATTATT--TT-ACTT-TAATTACTAAAATCT-GAAGCACAAA
* *
34311548 TGACTCTCTCGAA-TGATGATCGGGCAACTAACTGAATTCGACTCATC
438 CGACTCTCTCGAACT-ACGATCGGGCAACTAACTGAATTCGACTCATC
34311595 AACCCGAGCC
Statistics
Matches: 440, Mismatches: 32, Indels: 32
0.87 0.06 0.06
Matches are distributed among these distances:
603 6 0.01
604 54 0.12
605 52 0.12
606 72 0.16
608 2 0.00
609 2 0.00
610 27 0.06
611 20 0.05
612 199 0.45
613 6 0.01
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (604 bp):
TATAAATAGTTTGTTCATTTCATTTGTAAAGGACTTTTGCCAAATTTGTTAATGAACATTTATTC
TTGTGAGGTTGCTTCCTCTCATATCTCGTACAAGTTTCGAAAGACTTATCTAGCTTGTGCTAGTG
GCGTCAACCGTCTTGTTTGAACTTATCACCAATCTTGGTGTGGCGTTCACCTATCAATCTATCCA
ACTTCACCTTAACAATATAGGAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTGA
GTTCGTTTTTCCATCCCCCAACTTTCAACTTTCCTTCTTGTAACCAAACCGAACCATCTATCCAT
CACCCATCTTTGCTACACATAACCGAACCTATTACTAAACTTACCCTTCTTGAAACCTTCCACTT
AACCTAATCCATTATTTTACTTTAATTACTAAAATCTGAAGCACAAACGACTCTCTCGAACTACG
ATCGGGCAACTAACTGAATTCGACTCATCTATCCGGGCCGGATCACATCACCTTTAATGATTTAT
TCTAGAATATTCTAGTGCATTTTTAGCTGAATTTACTTAGTCTTTAAGCTACTAGTTTGTCCATT
CGGTTACTACATGATAGGT
Found at i:34313486 original size:21 final size:20
Alignment explanation
Indices: 34313452--34313494 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
34313442 GGATGAGCTG
34313452 AAACGAGCTAAATTTGAACTC
1 AAACGAGCTAAA-TTGAACTC
* * *
34313473 AAACGAGTTGAATTGAGCTC
1 AAACGAGCTAAATTGAACTC
34313493 AA
1 AA
34313495 GTGAGCTGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (20 bp):
AAACGAGCTAAATTGAACTC
Found at i:34318141 original size:30 final size:30
Alignment explanation
Indices: 34318093--34318174 Score: 103
Period size: 30 Copynumber: 2.7 Consensus size: 30
34318083 TACGGAATAG
* *
34318093 AGATGACATGAAAACCAAGATAAAGAAGTCCA
1 AGAT-ACA-GAAATCCAAGATAAAGAAATCCA
*
34318125 GGATGA-AGAAATCCAAGATAAAGAAATCCA
1 AGAT-ACAGAAATCCAAGATAAAGAAATCCA
34318155 AGATACAGAAATCCAAGATA
1 AGATACAGAAATCCAAGATA
34318175 CAATATCATA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
29 1 0.02
30 38 0.84
31 1 0.02
32 5 0.11
ACGTcount: A:0.54, C:0.15, G:0.18, T:0.13
Consensus pattern (30 bp):
AGATACAGAAATCCAAGATAAAGAAATCCA
Found at i:34318176 original size:15 final size:15
Alignment explanation
Indices: 34318102--34318174 Score: 101
Period size: 15 Copynumber: 4.9 Consensus size: 15
34318092 GAGATGACAT
*
34318102 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* * *
34318117 GAAGTCCAGGATGAA
1 GAAATCCAAGATAAA
34318132 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
*
34318147 GAAATCCAAGATACA
1 GAAATCCAAGATAAA
34318162 GAAATCCAAGATA
1 GAAATCCAAGATA
34318175 CAATATCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 50 1.00
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:34321757 original size:40 final size:39
Alignment explanation
Indices: 34321673--34321857 Score: 160
Period size: 40 Copynumber: 4.6 Consensus size: 39
34321663 TTGAATGATG
* * *
34321673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
34321713 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
34321753 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
34321792 TCCGGGTTAAGTCCCAAAGGCAATTGTGCGAGTTAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATACTAA-A
* * *
34321832 ACCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
34321858 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 37 0.31
40 73 0.60
41 10 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:34321812 original size:79 final size:81
Alignment explanation
Indices: 34321673--34321857 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
34321663 TTGAATGATG
* * *
34321673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCAAT
34321737 TGTGCGAGATACTAAT-
66 TGTGCGAGATAC-AATA
* * * **
34321753 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAGGCAA
*
34321815 TTGTGCGAGTTACAATA
65 TTGTGCGAGATACAATA
* * *
34321832 ACCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34321858 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 4 0.04
79 53 0.60
80 32 0.36
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCAAT
TGTGCGAGATACAATA
Found at i:34325185 original size:30 final size:30
Alignment explanation
Indices: 34325137--34325218 Score: 103
Period size: 30 Copynumber: 2.7 Consensus size: 30
34325127 TACGGAATAG
* *
34325137 AGATGACATGAAAACCAAGATAAAGAAGTCCA
1 AGAT-ACA-GAAATCCAAGATAAAGAAATCCA
*
34325169 GGATGA-AGAAATCCAAGATAAAGAAATCCA
1 AGAT-ACAGAAATCCAAGATAAAGAAATCCA
34325199 AGATACAGAAATCCAAGATA
1 AGATACAGAAATCCAAGATA
34325219 CAATATCATA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
29 1 0.02
30 38 0.84
31 1 0.02
32 5 0.11
ACGTcount: A:0.54, C:0.15, G:0.18, T:0.13
Consensus pattern (30 bp):
AGATACAGAAATCCAAGATAAAGAAATCCA
Found at i:34325220 original size:15 final size:15
Alignment explanation
Indices: 34325146--34325218 Score: 101
Period size: 15 Copynumber: 4.9 Consensus size: 15
34325136 GAGATGACAT
*
34325146 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* * *
34325161 GAAGTCCAGGATGAA
1 GAAATCCAAGATAAA
34325176 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
*
34325191 GAAATCCAAGATACA
1 GAAATCCAAGATAAA
34325206 GAAATCCAAGATA
1 GAAATCCAAGATA
34325219 CAATATCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 50 1.00
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:34328848 original size:79 final size:81
Alignment explanation
Indices: 34328712--34328896 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
34328702 TTGAATGATG
* *
34328712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
34328776 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34328791 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
34328853 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
34328871 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34328897 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:34328910 original size:40 final size:40
Alignment explanation
Indices: 34328713--34328896 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
34328703 TGAATGATGT
* * * *
34328713 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
34328753 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
34328793 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
34328831 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34328872 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34328897 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34328918 original size:79 final size:79
Alignment explanation
Indices: 34328765--34328929 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
34328755 GGACTAAGAT
* * **
34328765 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34328830 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34328844 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
34328907 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34328923 CCGAAGG
1 CCGAAGG
34328930 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Done.