Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 107 of 332
Found at i:34336773 original size:79 final size:81
Alignment explanation
Indices: 34336637--34336821 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
34336627 TTGAATGATG
* * *
34336637 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGAAAT
34336701 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34336716 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGAA
*
34336778 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
34336796 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34336822 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGAAAT
TGTGCGAGATACTATA
Found at i:34336835 original size:40 final size:40
Alignment explanation
Indices: 34336638--34336821 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
34336628 TGAATGATGT
* * * *
34336638 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
34336678 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
34336718 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
34336756 TCCGGGTTAAGTCCCGAAGGAAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34336797 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34336822 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34336843 original size:79 final size:79
Alignment explanation
Indices: 34336690--34336854 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
34336680 GGACTAAGAT
* * * **
34336690 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGAAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34336755 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34336769 CCGAAGGAAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGAAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
34336832 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34336848 CCGAAGG
1 CCGAAGG
34336855 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGAAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34342059 original size:11 final size:11
Alignment explanation
Indices: 34342043--34342076 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
34342033 GTACCAAATA
34342043 CCATACCAATT
1 CCATACCAATT
34342054 CCATACC-ATT
1 CCATACCAATT
*
34342064 TCATACCAATT
1 CCATACCAATT
34342075 CC
1 CC
34342077 CAAATACCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.32, C:0.38, G:0.00, T:0.29
Consensus pattern (11 bp):
CCATACCAATT
Found at i:34345201 original size:23 final size:22
Alignment explanation
Indices: 34345149--34345201 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
34345139 TCCACGTCTT
*
34345149 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
34345171 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
34345194 TTTCTTTT
1 TTTCTTTT
34345202 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:34350323 original size:34 final size:34
Alignment explanation
Indices: 34350250--34350336 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
34350240 AGTACTGAAT
*
34350250 TGGGCTAAGGCCCACACTGATACTATTACCGTAA
1 TGGGCTAAGGCCCACACTGATACTACTACCGTAA
* * * *
34350284 TGGGCTAAGGTCCACACTGATATTGCTACTGTTAA
1 TGGGCTAAGGCCCACACTGATACTACTACCG-TAA
* *
34350319 -GGGCTTAGGCCCAAACTG
1 TGGGCTAAGGCCCACACTG
34350337 TTTGCACTGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 41 0.93
35 3 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGATACTACTACCGTAA
Found at i:34351856 original size:40 final size:40
Alignment explanation
Indices: 34351786--34352043 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
34351776 AAGCTAGGTA
* * * *
34351786 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34351825 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34351865 CCTTTGGGACTTAGCCCGGAGATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34351905 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34351945 CCTTCAGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34351985 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
34352025 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34352044 TTATCATCCG
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.07
40 184 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34359998 original size:40 final size:40
Alignment explanation
Indices: 34359928--34360185 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
34359918 AAGCCAGGTA
* * * *
34359928 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34359967 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34360007 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34360047 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34360087 CCTTCAGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34360127 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
34360167 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34360186 TTATCATCCG
Statistics
Matches: 199, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.07
40 186 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34376273 original size:41 final size:41
Alignment explanation
Indices: 34376123--34376307 Score: 198
Period size: 41 Copynumber: 4.6 Consensus size: 41
34376113 CGATTCTTAA
* * *
34376123 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * *
34376162 CCACTGGCTCGAAGGCCCTTCGGAACTAAGTTCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
34376203 CACTAGCTCAAAAGCCCTTCAAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* * * * *
34376244 CACTTGCTCAAGAGCCCTTCGTAATTAAGTTCAGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
34376285 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
34376308 CCCAAGCTCG
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
40 43 0.36
41 74 0.62
43 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:34379752 original size:19 final size:19
Alignment explanation
Indices: 34379722--34379767 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
34379712 CAAGTTAGCT
34379722 CTCATGTAGCTCCACACCAG
1 CTCAT-TAGCTCCACACCAG
***
34379742 CTCATTAGCTCGGGACCAG
1 CTCATTAGCTCCACACCAG
34379761 CTCATTA
1 CTCATTA
34379768 TCAGCTCACG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24
Consensus pattern (19 bp):
CTCATTAGCTCCACACCAG
Found at i:34381030 original size:14 final size:14
Alignment explanation
Indices: 34381008--34381041 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
34380998 ACCTAAACCG
*
34381008 ACCAATTTGTTCAT
1 ACCATTTTGTTCAT
*
34381022 ACCATTTTGTTCCT
1 ACCATTTTGTTCAT
34381036 ACCATT
1 ACCATT
34381042 CCATTCGTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCAT
Found at i:34388950 original size:10 final size:10
Alignment explanation
Indices: 34388934--34388991 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
34388924 CAACTCCGAC
34388934 CAGCTCAATT
1 CAGCTCAATT
* *
34388944 GAGCTCATTT
1 CAGCTCAATT
34388954 CAGCTCAA-T
1 CAGCTCAATT
34388963 CGAGCTCAATT
1 C-AGCTCAATT
*
34388974 TAGCTACAATT
1 CAGCT-CAATT
34388985 CAGCTCA
1 CAGCTCA
34388992 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:34388957 original size:20 final size:20
Alignment explanation
Indices: 34388934--34388994 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
34388924 CAACTCCGAC
34388934 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
34388954 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
34388975 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
34388995 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:34391720 original size:14 final size:14
Alignment explanation
Indices: 34391698--34391745 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
34391688 ACCTAAACCG
* *
34391698 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
34391712 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
34391726 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
34391740 ACCATT
1 ACCATT
34391746 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:34395167 original size:21 final size:21
Alignment explanation
Indices: 34395133--34395204 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
34395123 ACATTCTTGT
34395133 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAAGAAAAGA
*
34395154 AAAGAAAAAGCAAA-AGCAAGA
1 AAAGAAAAAGCAAAGA-AAAGA
* *
34395175 GAAGAAAAAGAAAATGAAATA-A
1 AAAGAAAAAGCAAA-GAAA-AGA
34395197 AAAGAAAA
1 AAAGAAAA
34395205 GAGAGGCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 5 0.12
21 25 0.61
22 9 0.22
23 2 0.05
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.03
Consensus pattern (21 bp):
AAAGAAAAAGCAAAGAAAAGA
Found at i:34395185 original size:37 final size:36
Alignment explanation
Indices: 34395134--34395205 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
34395124 CATTCTTGTA
34395134 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGCAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAG-AAAAGC
*
34395171 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAAG
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAAG
34395206 AGAGGCAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 5 0.16
37 24 0.75
38 3 0.09
ACGTcount: A:0.74, C:0.04, G:0.19, T:0.03
Consensus pattern (36 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAGC
Found at i:34395309 original size:30 final size:31
Alignment explanation
Indices: 34395275--34395356 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
34395265 TTTGAAAAGC
*
34395275 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* * *
34395305 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* *
34395335 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAAAGAAAAAGAAAT
34395357 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
Found at i:34395329 original size:24 final size:24
Alignment explanation
Indices: 34395280--34395349 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
34395270 AAAGCAAAAA
*
34395280 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
34395304 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAA-TT
* ** *
34395328 GAGAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
34395350 AAGAAATTGA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 3 0.09
24 28 0.80
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:34397554 original size:30 final size:30
Alignment explanation
Indices: 34397459--34397555 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
34397449 AGCTCACTCC
*
34397459 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
34397489 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
34397519 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
34397549 TAGCTCA
1 TAGCTCA
34397556 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:34398338 original size:20 final size:20
Alignment explanation
Indices: 34398313--34398353 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
34398303 TTGGTGCACA
34398313 TACAAGTCACTTGAAGCCTT
1 TACAAGTCACTTGAAGCCTT
34398333 TACAAGTCACTTGAAGCCTT
1 TACAAGTCACTTGAAGCCTT
34398353 T
1 T
34398354 CTTTATGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (20 bp):
TACAAGTCACTTGAAGCCTT
Found at i:34402849 original size:43 final size:43
Alignment explanation
Indices: 34402712--34402867 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 43
34402702 GCTCATACAT
* * * *
34402712 TGCCAATGTCCCAGACGTGGTCATACATGT-AATCACAAATCGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AAAACGA
* * ** * * * *
34402755 TGCCACTGTCCTAGGTAGGGTCTTACACG-AACTCATATACGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAAACGA
* *
34402797 TGCCGATGTCCCACACATGGTCTTACACGTAAATCAAAAACGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAAACGA
*
34402840 TGCCAATGTCCCAGACGTGGTCTTACAC
1 TGCCAATGTCCCAGACATGGTCTTACAC
34402868 AAATCTTATA
Statistics
Matches: 86, Mismatches: 25, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
42 26 0.30
43 60 0.70
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
TGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAAACGA
Found at i:34402862 original size:85 final size:84
Alignment explanation
Indices: 34402712--34402867 Score: 190
Period size: 85 Copynumber: 1.8 Consensus size: 84
34402702 GCTCATACAT
* * * * * *
34402712 TGCCAATGTCCCAGACGTGGTCATACATGTAATCACAAATCGATGCCACTGTCCTAGGTAGGGTC
1 TGCCAATGTCCCACACATGGTCATACACGTAATCACAAAACGATGCCAATGTCCCAGGTA-GGTC
34402777 TTACACGAACTCATATACGA
65 TTACACGAACTCATATACGA
* *
34402797 TGCCGATGTCCCACACATGGTCTTACACGTAAATCA-AAAACGATGCCAATGTCCCAGACGT-GG
1 TGCCAATGTCCCACACATGGTCATACACGT-AATCACAAAACGATGCCAATGTCCCAG--GTAGG
34402860 TCTTACAC
63 TCTTACAC
34402868 AAATCTTATA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
85 53 0.88
86 5 0.08
87 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (84 bp):
TGCCAATGTCCCACACATGGTCATACACGTAATCACAAAACGATGCCAATGTCCCAGGTAGGTCT
TACACGAACTCATATACGA
Found at i:34410825 original size:20 final size:20
Alignment explanation
Indices: 34410779--34410825 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
34410769 GTAAGCTCGG
34410779 TTGAGCTCAAACGAGCTGAA
1 TTGAGCTCAAACGAGCTGAA
*** *
34410799 ACAAGCTCAAATGAGCTGAA
1 TTGAGCTCAAACGAGCTGAA
34410819 TTGAGCT
1 TTGAGCT
34410826 GGATAGAGCT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (20 bp):
TTGAGCTCAAACGAGCTGAA
Found at i:34410836 original size:30 final size:31
Alignment explanation
Indices: 34410802--34410860 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
34410792 AGCTGAAACA
*
34410802 AGCTCAAATGAGCT-GAATTGAGCT-GGATAG
1 AGCTCAAA-GAGCTAGAAATGAGCTAGGATAG
*
34410832 AGCTCGAAGAGCTAGAAATGAGCTAGGAT
1 AGCTCAAAGAGCTAGAAATGAGCTAGGAT
34410861 CAGCTTGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 16 0.64
31 4 0.16
ACGTcount: A:0.36, C:0.14, G:0.31, T:0.20
Consensus pattern (31 bp):
AGCTCAAAGAGCTAGAAATGAGCTAGGATAG
Found at i:34416522 original size:42 final size:42
Alignment explanation
Indices: 34416463--34416547 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
34416453 GTCATCCCAG
34416463 GCATTAACTCAATACCAAACTCTACTTCCTGAATAGGTGGCA
1 GCATTAACTCAATACCAAACTCTACTTCCTGAATAGGTGGCA
34416505 GCATTAACTCAATACCAAACTCTACTTCCTGAATAGGTGGCA
1 GCATTAACTCAATACCAAACTCTACTTCCTGAATAGGTGGCA
34416547 G
1 G
34416548 TCTTCATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
GCATTAACTCAATACCAAACTCTACTTCCTGAATAGGTGGCA
Found at i:34423102 original size:15 final size:15
Alignment explanation
Indices: 34423084--34423174 Score: 105
Period size: 15 Copynumber: 6.1 Consensus size: 15
34423074 CTTGGGTTTA
* *
34423084 TTTATCCTGGATCTC
1 TTTATTCTGGATTTC
34423099 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
*
34423114 TTTATTCTGGGTTTC
1 TTTATTCTGGATTTC
*
34423129 TTTATTCTGGGTTTC
1 TTTATTCTGGATTTC
*
34423144 TCTA-TCTTGGATTTC
1 TTTATTC-TGGATTTC
*
34423159 TTTATTC-GGTTTTC
1 TTTATTCTGGATTTC
34423173 TT
1 TT
34423175 GTTATCTTTG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
14 10 0.15
15 55 0.82
16 2 0.03
ACGTcount: A:0.10, C:0.16, G:0.15, T:0.58
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:34425572 original size:46 final size:46
Alignment explanation
Indices: 34425522--34425695 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
34425512 TGGTTGAGCA
*
34425522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
34425568 TCCGAACTCGTTGAGTTGAGT-CGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
*
34425614 TCCGAACTCGTTGAGTTGAGTCC-AGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
34425659 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34425696 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 35 0.34
46 66 0.65
47 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34425675 original size:91 final size:93
Alignment explanation
Indices: 34425519--34425688 Score: 290
Period size: 91 Copynumber: 1.8 Consensus size: 93
34425509 GGATGGTTGA
* *
34425519 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
34425584 TGAGT-CGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
34425611 GCATCCGAACTCGTTGAGTTGAGTCC-AGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
34425675 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34425689 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 39 0.53
92 34 0.47
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:34431494 original size:15 final size:16
Alignment explanation
Indices: 34431476--34431505 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34431466 ATGGAAACTA
34431476 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
34431491 TGGTATAATGAAATA
1 TGGTATAATGAAATA
34431506 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:34432833 original size:11 final size:11
Alignment explanation
Indices: 34432813--34432848 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
34432803 CTCCCATGCT
34432813 AGGAAACTTCA
1 AGGAAACTTCA
*
34432824 AGGAACCTTCA
1 AGGAAACTTCA
*
34432835 AGGAAGCTTCA
1 AGGAAACTTCA
34432846 AGG
1 AGG
34432849 GATGTTCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:34432860 original size:22 final size:22
Alignment explanation
Indices: 34432811--34432862 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
34432801 GTCTCCCATG
*
34432811 CTAGGAAACTTCAAGGAACCTT
1 CTAGGAAGCTTCAAGGAACCTT
* * **
34432833 CAAGGAAGCTTCAAGGGATGTT
1 CTAGGAAGCTTCAAGGAACCTT
34432855 CTAGGAAG
1 CTAGGAAG
34432863 TTTCCAAGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (22 bp):
CTAGGAAGCTTCAAGGAACCTT
Found at i:34436406 original size:56 final size:56
Alignment explanation
Indices: 34436318--34436709 Score: 570
Period size: 56 Copynumber: 7.0 Consensus size: 56
34436308 GACCATGGCA
*
34436318 TCGATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * *
34436374 TCGATATATGTGTACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * *
34436430 TCAATATATATGTGCGAGTAAAACCACGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * ** *
34436486 CCAATATATGTGTATGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * * * *
34436542 TTGATATATATGTACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* *
34436598 TCGATATATATGTGTGAGTAAGACCACGTTTAATACGTTGGCAAT-GATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGC-ATCGATATGTGATT
* * *
34436654 CCAATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
34436710 ACATGTAAGA
Statistics
Matches: 301, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
55 2 0.01
56 297 0.99
57 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
Found at i:34436599 original size:168 final size:168
Alignment explanation
Indices: 34436321--34436709 Score: 672
Period size: 168 Copynumber: 2.3 Consensus size: 168
34436311 CATGGCATCG
* *
34436321 ATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGATATGTGATTTCGATATATGTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCGATATATATG
34436386 TACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATTTCAATATATATGTGCGAGTAA
66 TACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATTTCAATATATATGTGCGAGTAA
34436451 AACCACGTTTAATACGTTGGC-ATCGATATGTGATTCCA
131 AACCACGTTTAATACGTTGGCAAT-GATATGTGATTCCA
** * *
34436489 ATATATGTGTATGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTTGATATATATG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCGATATATATG
* *
34436554 TACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATTTCGATATATATGTGTGAGTAA
66 TACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATTTCAATATATATGTGCGAGTAA
*
34436619 GACCACGTTTAATACGTTGGCAATGATATGTGATTCCA
131 AACCACGTTTAATACGTTGGCAATGATATGTGATTCCA
*
34436657 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGATT
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
34436710 ACATGTAAGA
Statistics
Matches: 207, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
168 205 0.99
169 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (168 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCGATATATATG
TACGAGTAAGACCACCTTTAATATGTTGGCATCGATATGTGATTTCAATATATATGTGCGAGTAA
AACCACGTTTAATACGTTGGCAATGATATGTGATTCCA
Found at i:34441508 original size:18 final size:19
Alignment explanation
Indices: 34441485--34441523 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
34441475 TTTATCTCAA
*
34441485 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
34441503 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
34441522 TT
1 TT
34441524 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:34441590 original size:12 final size:12
Alignment explanation
Indices: 34441559--34441583 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34441549 GTTTTCAATC
34441559 TCATTTTCTTTT
1 TCATTTTCTTTT
34441571 TCATTTTCTTTT
1 TCATTTTCTTTT
34441583 T
1 T
34441584 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:34441601 original size:13 final size:12
Alignment explanation
Indices: 34441585--34441616 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
34441575 TTTCTTTTTG
34441585 TTTTTCAAAGGC
1 TTTTTCAAAGGC
34441597 TTTTTCAAAGGC
1 TTTTTCAAAGGC
34441609 TTTTTCAA
1 TTTTTCAA
34441617 GTTCTCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (12 bp):
TTTTTCAAAGGC
Found at i:34441674 original size:5 final size:5
Alignment explanation
Indices: 34441664--34441720 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
34441654 CTTTTGCCTC
*
34441664 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
34441711 TCTTT TCTTT
1 TCTTT TCTTT
34441721 GTTTTCTCGT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:34441704 original size:15 final size:14
Alignment explanation
Indices: 34441664--34441720 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
34441654 CTTTTGCCTC
*
34441664 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
34441679 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
34441694 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
34441711 TCTTTTCTTT
1 TCTTTTCTTT
34441721 GTTTTCTCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:34441721 original size:21 final size:21
Alignment explanation
Indices: 34441664--34441725 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
34441654 CTTTTGCCTC
* *
34441664 TCTTTTCTTTT-TATTTCGTTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
34441685 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
34441706 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
34441726 CTCGTTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 7 0.21
21 22 0.65
22 5 0.15
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:34444194 original size:24 final size:24
Alignment explanation
Indices: 34444167--34444251 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
34444157 GTTTCCTCGT
34444167 ACACATAGTGCTATATAATCTCTC
1 ACACATAGTGCTATATAATCTCTC
* * * * *
34444191 ACACATAGTGCCATGTAGTTTTTGC
1 ACACATAGTGCTATATAATCTCT-C
* * *
34444216 ACACATAGTGC-AGCATAACCTCGC
1 ACACATAGTGCTA-TATAATCTCTC
34444240 ACACATAGTGCT
1 ACACATAGTGCT
34444252 GAAATTTCTT
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
24 31 0.67
25 15 0.33
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
ACACATAGTGCTATATAATCTCTC
Found at i:34445688 original size:24 final size:24
Alignment explanation
Indices: 34445655--34445702 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
34445645 AAGACTAAAT
*
34445655 TAAAATATCAAATTTTCACACATG
1 TAAAACATCAAATTTTCACACATG
34445679 TAAAACATCAAATTTTCACACATG
1 TAAAACATCAAATTTTCACACATG
34445703 CACTATCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31
Consensus pattern (24 bp):
TAAAACATCAAATTTTCACACATG
Found at i:34445710 original size:22 final size:23
Alignment explanation
Indices: 34445660--34445710 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
34445650 TAAATTAAAA
34445660 TATCAAATTTTCACACATGTAAAAC
1 TATCAAATTTTCACACATG--AAAC
*
34445685 -ATCAAATTTTCACACATG-CAC
1 TATCAAATTTTCACACATGAAAC
34445706 TATCA
1 TATCA
34445711 CACATAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 2 0.08
22 4 0.17
24 18 0.75
ACGTcount: A:0.41, C:0.24, G:0.04, T:0.31
Consensus pattern (23 bp):
TATCAAATTTTCACACATGAAAC
Found at i:34447223 original size:46 final size:46
Alignment explanation
Indices: 34447151--34447322 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
34447141 TGTAACCCGC
* *
34447151 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * * *
34447197 CCATGAGTGAACTCGAACTCAACTCAACGAGTTTGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* *
34447247 -C-TCAG-GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
34447290 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
34447323 TGGATGCCCA
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 3 0.03
46 57 0.54
47 26 0.25
48 4 0.04
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:34447272 original size:93 final size:93
Alignment explanation
Indices: 34447159--34447330 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
34447149 GCCCATAAGT
* * *
34447159 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
34447224 CGAGTTTGGATGCCTAGTTACATCTCAG
66 CGAGTTTGGATGCCTAGTTACATCTCAG
* *
34447252 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
34447317 CGAGTTTGGATGCC
66 CGAGTTTGGATGCC
34447331 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTTGGATGCCTAGTTACATCTCAG
Found at i:34447345 original size:46 final size:46
Alignment explanation
Indices: 34447202--34447345 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
34447192 TGCATCCATG
* * * *
34447202 AGTGAACTCGAACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCA--TATATCCC
* * *
34447250 AG-GAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATAT--ATCC--C
*
34447295 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATATATCCC
34447341 AGTGA
1 AGTGA
34447346 CATGTCACTC
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 2 0.03
46 33 0.43
47 27 0.36
48 6 0.08
50 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATATATCCC
Found at i:34449422 original size:19 final size:19
Alignment explanation
Indices: 34449398--34449437 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34449388 AGCTCCCGTG
34449398 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
34449417 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
34449436 TA
1 TA
34449438 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:34451992 original size:9 final size:10
Alignment explanation
Indices: 34451985--34452032 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 10
34451975 AAGAGAAAAC
34451985 AAAGAAAAGA
1 AAAGAAAAGA
34451995 AAAGAAAAAGAA
1 AAAG-AAAAG-A
34452007 AAAGAAAATGA
1 AAAGAAAA-GA
34452018 AATA-AAAAGA
1 AA-AGAAAAGA
34452028 AAAGA
1 AAAGA
34452033 GTACAAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
9 1 0.03
10 9 0.27
11 16 0.48
12 7 0.21
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:34451995 original size:5 final size:5
Alignment explanation
Indices: 34451985--34452032 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
34451975 AAGAGAAAAC
34451985 AAAGA AAAGA AAAGAA AAAGAA AAAGA AAATGA AATA-A AAAGA AAAGA
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAA-GA AA-AGA AAAGA AAAGA
34452033 GTACAAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 1 0.03
5 22 0.56
6 15 0.38
7 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:34452012 original size:22 final size:22
Alignment explanation
Indices: 34451985--34452030 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
34451975 AAGAGAAAAC
34451985 AAAGAAAA-GAAAAGAAAAAGAA
1 AAAGAAAATG-AAAGAAAAAGAA
*
34452007 AAAGAAAATGAAATAAAAAGAA
1 AAAGAAAATGAAAGAAAAAGAA
34452029 AA
1 AA
34452031 GAGTACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.04
Consensus pattern (22 bp):
AAAGAAAATGAAAGAAAAAGAA
Found at i:34455170 original size:19 final size:19
Alignment explanation
Indices: 34455146--34455185 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34455136 AGCTCCCATG
34455146 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
34455165 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
34455184 TA
1 TA
34455186 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:34469016 original size:87 final size:87
Alignment explanation
Indices: 34468913--34469093 Score: 355
Period size: 87 Copynumber: 2.1 Consensus size: 87
34468903 CATGAATATC
34468913 TAATG-CATGAATGTATGTGGGTAAACATAAAATCCATGGAAACAAGAAAAATGGATGAATGTAG
1 TAATGACATGAATGTATGTGGGTAAACATAAAATCCATGGAAACAAGAAAAATGGATGAATGTAG
34468977 TATGAAAAATGGCAATATTCTT
66 TATGAAAAATGGCAATATTCTT
34468999 TAATGACATGAATGTATGTGGGTAAACATAAAATCCATGGAAACAAGAAAAATGGATGAATGTAG
1 TAATGACATGAATGTATGTGGGTAAACATAAAATCCATGGAAACAAGAAAAATGGATGAATGTAG
34469064 TATGAAAAATGGCAATATTCTT
66 TATGAAAAATGGCAATATTCTT
34469086 TAATGACA
1 TAATGACA
34469094 AGCATGAGTA
Statistics
Matches: 94, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
86 5 0.05
87 89 0.95
ACGTcount: A:0.45, C:0.08, G:0.20, T:0.27
Consensus pattern (87 bp):
TAATGACATGAATGTATGTGGGTAAACATAAAATCCATGGAAACAAGAAAAATGGATGAATGTAG
TATGAAAAATGGCAATATTCTT
Found at i:34469497 original size:13 final size:13
Alignment explanation
Indices: 34469479--34469503 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34469469 TGTGGGTACA
34469479 CACGGTCGTGTCG
1 CACGGTCGTGTCG
34469492 CACGGTCGTGTC
1 CACGGTCGTGTC
34469504 TTACTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGTCGTGTCG
Found at i:34476796 original size:11 final size:11
Alignment explanation
Indices: 34476776--34476813 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
34476766 CTCTCATGCT
34476776 AGGAAACTTCA
1 AGGAAACTTCA
*
34476787 AGGAACCTTCA
1 AGGAAACTTCA
*
34476798 AGGAAGCTTCA
1 AGGAAACTTCA
34476809 AGGAA
1 AGGAA
34476814 TGTTTTAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:34478490 original size:31 final size:31
Alignment explanation
Indices: 34478447--34478654 Score: 346
Period size: 31 Copynumber: 6.7 Consensus size: 31
34478437 TTAGTCTTGA
*
34478447 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
34478477 CATATCACTGGGCCGACGCTTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
34478508 CATATCACTGGGCTGAAGCTTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
34478539 CATATCACTGGGCCGAAGCCATTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
34478570 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
34478601 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
34478632 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
34478655 ACTGTAAACG
Statistics
Matches: 166, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.03
31 161 0.97
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:34478730 original size:42 final size:42
Alignment explanation
Indices: 34478678--34478811 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
34478668 TGGCCCTTAG
34478678 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
* *
34478720 GCCCGTTTCAATATCACATGTAATGTCAATGGATGTGTGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
*
34478762 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
34478804 GCCCATTT
1 GCCCATTT
34478812 GGGGAGACTA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
Found at i:34478997 original size:25 final size:25
Alignment explanation
Indices: 34478968--34479028 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
34478958 TAATTAGGGT
34478968 AAAGCCC-TTTCTGATAAACTGGGGC
1 AAAGCCCTTTTC-GATAAACTGGGGC
34478993 AAAGCCCTTTTCGATAAACTGGGGC
1 AAAGCCCTTTTCGATAAACTGGGGC
* *
34479018 AGAGCCTTTTT
1 AAAGCCCTTTT
34479029 AGCACTTCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 29 0.88
26 4 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGCCCTTTTCGATAAACTGGGGC
Found at i:34479867 original size:27 final size:27
Alignment explanation
Indices: 34479837--34479899 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
34479827 GGGCGTATTC
34479837 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
34479864 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
34479891 GTCTTTTTA
1 GTCATTTTA
34479900 ACTATTAAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:34479985 original size:27 final size:27
Alignment explanation
Indices: 34479955--34480196 Score: 107
Period size: 27 Copynumber: 8.9 Consensus size: 27
34479945 GTAAATCTAC
*
34479955 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
34479982 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* *
34480010 AAAGTCAAGGGTATTTCTA-TAATTTTGT
1 AAA-CCAAGGGTATTTC-AGTAATTTTAT
* * *
34480038 AAATC-AGGAGTACTTT-GGTAATTTTAC
1 AAACCAAGG-GTA-TTTCAGTAATTTTAT
*** * * *
34480065 AAATTGAGGGTTTTTCAGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
34480092 AAACCAATGGTATTTCGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * * ** *
34480119 AAGCTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
34480146 AAACTAGGGGTATTTTGGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
34480173 CCTA-CAGGGGTATTTCAGTAATTT
1 -AAACCAAGGGTATTTCAGTAATTT
34480197 CGCAATCGAG
Statistics
Matches: 171, Mismatches: 35, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
26 6 0.04
27 127 0.74
28 22 0.13
29 16 0.09
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:34480266 original size:27 final size:27
Alignment explanation
Indices: 34480200--34480394 Score: 239
Period size: 27 Copynumber: 7.2 Consensus size: 27
34480190 GTAATTTCGC
*
34480200 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
34480227 AA-CTGACGATAAAATTGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
* * *
34480254 AATTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
34480281 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
34480308 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
34480335 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
34480362 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
34480389 AATCGA
1 AATCGA
34480395 TGGCATTTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:34480321 original size:81 final size:81
Alignment explanation
Indices: 34480200--34480394 Score: 284
Period size: 81 Copynumber: 2.4 Consensus size: 81
34480190 GTAATTTCGC
* * * *
34480200 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGACGATAAAATTGTAATTTTGTAAATTGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GACGATAAAATGGTAATTTTGTAAATCGAGGGT
*
34480264 AAAACGATAATTCTGTA
65 AAAACGATAATTCTATA
* * *
34480281 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGACGATAAAATGGTAATTTTGTAAATCGAGGGTA
*
34480346 AAACGGTAATTCTATA
66 AAACGATAATTCTATA
*
34480362 AATCGAGGGTAAAATGGTAATTCTACAAATCGA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGA
34480395 TGGCATTTCA
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
81 102 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGACGATAAAATGGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:34482705 original size:31 final size:31
Alignment explanation
Indices: 34482656--34482801 Score: 249
Period size: 31 Copynumber: 4.7 Consensus size: 31
34482646 TTAGTCTTGA
*
34482656 CATAT-ACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
34482686 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
34482717 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
34482748 CATATCACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
34482779 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
34482802 ACTGTAAACG
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.05
31 105 0.95
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:34482872 original size:42 final size:42
Alignment explanation
Indices: 34482825--34483000 Score: 325
Period size: 42 Copynumber: 4.2 Consensus size: 42
34482815 TGGCCCTTAG
34482825 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
34482867 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
*
34482909 GCCTATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
* *
34482951 GCCCATTTCAATATCACATGTAAAGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
34482993 GCCCATTT
1 GCCCATTT
34483001 GGGGAGACTA
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 130 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
Found at i:34483217 original size:25 final size:26
Alignment explanation
Indices: 34483151--34483217 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 26
34483141 TTTTAATAAT
34483151 TGGGGCAAAGCCC-TTTCTGATAAAC
1 TGGGGCAAAGCCCTTTTCTGATAAAC
* ** *
34483176 TAGGGCAAAGCTTTTTTC-GGTAAAC
1 TGGGGCAAAGCCCTTTTCTGATAAAC
*
34483201 TGGGGCAGAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
34483218 AGCACTTCCT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
25 29 0.88
26 4 0.12
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (26 bp):
TGGGGCAAAGCCCTTTTCTGATAAAC
Found at i:34484176 original size:27 final size:27
Alignment explanation
Indices: 34484146--34484251 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
34484136 AAATCTACAA
34484146 ACCAAGGGTATTTCAGTAATTTTGTAG
1 ACCAAGGGTATTTCAGTAATTTTGTAG
*
34484173 ACCAATGGTATTTCTA-TAATTTT-TAG
1 ACCAAGGGTATTTC-AGTAATTTTGTAG
* * *
34484199 AAAGTCAAGGGTATTTCTGTAATTTTGTAA
1 --A-CCAAGGGTATTTCAGTAATTTTGTAG
* * **
34484229 ATCAGGGGTATTTTGGTAATTTT
1 ACCAAGGGTATTTCAGTAATTTT
34484252 ACAAATTGAG
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
26 3 0.05
27 39 0.60
28 3 0.05
29 18 0.28
30 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
ACCAAGGGTATTTCAGTAATTTTGTAG
Found at i:34484249 original size:56 final size:54
Alignment explanation
Indices: 34484141--34484277 Score: 141
Period size: 56 Copynumber: 2.5 Consensus size: 54
34484131 TTGGTAAATC
* * *
34484141 TACAAACCAAGGGTATTTCAGTAATTTTGTAGACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* * * * *
34484196 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTT
** *
34484251 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
34484278 CACAAACTAG
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
54 18 0.26
55 14 0.21
56 36 0.53
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:34484257 original size:27 final size:27
Alignment explanation
Indices: 34484193--34484357 Score: 142
Period size: 27 Copynumber: 6.1 Consensus size: 27
34484183 TTTCTATAAT
* *
34484193 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
34484221 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
34484248 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
34484275 TTTCACAAA-CTAGTGGTATTTTAGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
34484302 TTTTACAAGAT-AGGGGTATTTTGGTAA
1 TTTTACAA-ATCAGGGGTATTTTGGTAA
* *
34484329 TTTTAC-AAGCTAGGTGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
34484356 TT
1 TT
34484358 CTATCCTACA
Statistics
Matches: 112, Mismatches: 17, Indels: 17
0.77 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 3 0.03
27 99 0.88
28 9 0.08
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:34484371 original size:54 final size:54
Alignment explanation
Indices: 34484235--34484389 Score: 138
Period size: 54 Copynumber: 2.9 Consensus size: 54
34484225 GTAAATCAGG
* * **
34484235 GGTATTTTGGTAATTTTACAA-ATTGAGGGTATTTCGGTAATTTCACAAACTAGT
1 GGTATTTTAGTAATTCTACAAGACAG-GGGTATTTCGGTAATTTCACAAACTAGT
* * * * *
34484289 GGTATTTTAGTAATTTTACAAGATAGGGGTATTTTGGTAATTTTACAAGCTAG-
1 GGTATTTTAGTAATTCTACAAGACAGGGGTATTTCGGTAATTTCACAAACTAGT
* ** *
34484342 GTGTATTTTGGTAATTCTATC-CTACAGGGGTATTTC-ATAATTTCACAA
1 G-GTATTTTAGTAATTCTA-CAAGACAGGGGTATTTCGGTAATTTCACAA
34484390 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
53 11 0.13
54 70 0.82
55 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
GGTATTTTAGTAATTCTACAAGACAGGGGTATTTCGGTAATTTCACAAACTAGT
Found at i:34484376 original size:27 final size:27
Alignment explanation
Indices: 34484232--34484357 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
34484222 TTTGTAAATC
*
34484232 AGGGGTATTTTGGTAATTTTACAA-AT
1 AGGGGTATTTTGGTAATTTTACAAGCT
* * * *
34484258 TGAGGGTATTTCGGTAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAGCT
* * *
34484286 AGTGGTATTTTAGTAATTTTACAAGAT
1 AGGGGTATTTTGGTAATTTTACAAGCT
34484313 AGGGGTATTTTGGTAATTTTACAAGCT
1 AGGGGTATTTTGGTAATTTTACAAGCT
*
34484340 AGGTGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
34484358 CTATCCTACA
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 80 0.96
28 2 0.02
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAGCT
Found at i:34484376 original size:81 final size:81
Alignment explanation
Indices: 34484207--34484357 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
34484197 AGAAAGTCAA
** *
34484207 GGGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GGGTATTT-TAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCG
34484271 GTAATTTCACAAACTAG
65 GTAATTTCACAAACTAG
* * *
34484288 TGGTATTTTAGTAATTTTACAAGAT-AGGGGTATTTTGGTAATTTTACAAGCT-AGGTGTATTTT
1 GGGTATTTTAGTAATTTTACAA-ATCAGGGGTATTTTGGTAATTTTACAAACTGAGG-GTATTTC
34484351 GGTAATT
64 GGTAATT
34484358 CTATCCTACA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 4 0.07
81 55 0.90
82 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.43
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGG
TAATTTCACAAACTAG
Found at i:34484427 original size:27 final size:27
Alignment explanation
Indices: 34484388--34484585 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
34484378 ATAATTTCAC
* *
34484388 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
34484415 AA-CTGAGGATAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
34484442 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
34484469 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
34484496 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
34484523 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
34484550 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
34484577 AATCGAGGG
1 AATCGAGGG
34484586 CATTTCAGTA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:34484585 original size:81 final size:81
Alignment explanation
Indices: 34484388--34484585 Score: 290
Period size: 81 Copynumber: 2.4 Consensus size: 81
34484378 ATAATTTCAC
* * * *
34484388 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGATAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
34484452 AAAATGATAATTCTATA
65 AAAACGATAATTCTATA
* * *
34484469 AATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
*
34484534 AAACGGTAATTCTATA
66 AAACGATAATTCTATA
*
34484550 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
34484586 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:34485685 original size:28 final size:27
Alignment explanation
Indices: 34485624--34485696 Score: 67
Period size: 28 Copynumber: 2.7 Consensus size: 27
34485614 TAATGCATGC
34485624 TTTTAATATGTCTTAG-TTAATACATA
1 TTTTAATATGTCTTAGCTTAATACATA
** * *
34485650 TCAGTAATTTGTCTTAGCTTATTACATAA
1 T-TTTAATATGTCTTAGCTTAATACAT-A
* *
34485679 TTTTAATGTGTTTTAGCT
1 TTTTAATATGTCTTAGCT
34485697 CCAGCTGAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 1 0.03
27 12 0.33
28 21 0.58
29 2 0.06
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.51
Consensus pattern (27 bp):
TTTTAATATGTCTTAGCTTAATACATA
Found at i:34485947 original size:44 final size:43
Alignment explanation
Indices: 34485884--34485974 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 43
34485874 TCAAAGAAAG
* *
34485884 CATGCATGGAACGGCATTAAAGGAGCTGTTGATTTCTCCTTTTT
1 CATGCATGGAACGGCATTAAAGGAGCTGTTGATTCCT-CTTTTC
* *
34485928 CATGCATGGGACTGCATTAAAGGAGCTGTTGATTCCTCTTTTC
1 CATGCATGGAACGGCATTAAAGGAGCTGTTGATTCCTCTTTTC
34485971 CATG
1 CATG
34485975 TGCCAATTCG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 9 0.21
44 34 0.79
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (43 bp):
CATGCATGGAACGGCATTAAAGGAGCTGTTGATTCCTCTTTTC
Found at i:34490851 original size:39 final size:40
Alignment explanation
Indices: 34490737--34490851 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
34490727 ACTTGAGGTA
34490737 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
*
34490777 TTATCCGGGCTTAAAGACCCACCA-GCTTCGTGCTGGAATG
1 TTATCCGGGCTTAAAGACCC-GCAGGCTTCGTGCTGGAATG
* * * * *
34490817 TTATCCGAGC-TAGAGACCCGTAGGCTACGAGCTGG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGG
34490852 TATTATACCG
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.02
39 18 0.27
40 45 0.68
41 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
Found at i:34498215 original size:130 final size:127
Alignment explanation
Indices: 34498069--34498426 Score: 448
Period size: 130 Copynumber: 2.8 Consensus size: 127
34498059 CGAAGACGAA
* *
34498069 ATTTGATGTTCGGCAATTCGCGAAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTC
1 ATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTC
* * * *
34498134 AAAATAATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCTTAAACAAAGATGGG
66 AAAATAATCGAATATCCCTTC-AAATTTCACTCATATCTTTTAAAATCCCTAAAACAAAG--GCG
34498199 ATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTC
1 ATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTC
* * * * * *
34498264 AAAATAATCGAATATCACTTTAAAATTTCGCTCGTGTCTTTTAAAATCCCTAAAACGAAGGCG
66 AAAATAATCGAATATC-CCTTCAAATTTCACTCATATCTTTTAAAATCCCTAAAACAAAGGCG
* * * * * *
34498327 ATATGTGGTATTTGGCAATTCGTGGGATCGTGCCCTAACGTGTTGGGTAGCAATTTCTCGA-TTG
1 AT-T-TGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGC-ATTTG
* * *
34498391 TTTAAAATAATCAAATATCCCTTCACAATTTCACTC
63 CTCAAAATAATCGAATATCCCTTCA-AATTTCACTC
34498427 GGCTCTTCTA
Statistics
Matches: 199, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
128 4 0.02
129 5 0.03
130 186 0.93
131 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (127 bp):
ATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTC
AAAATAATCGAATATCCCTTCAAATTTCACTCATATCTTTTAAAATCCCTAAAACAAAGGCG
Found at i:34498439 original size:130 final size:126
Alignment explanation
Indices: 34498055--34498457 Score: 430
Period size: 130 Copynumber: 3.1 Consensus size: 126
34498045 AAAATTCTTC
* * * *
34498055 AAAACGAAGACGAAATTTGATGTTCGGCAATTCGCGAAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGGCG--ATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * **
34498120 TTTCGCATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCT
64 TTTCGCATTTGCTCAAAATAATCGAATATCCCTTC-AAATTTCACTC-GGTCTTTTAAAATCCCT
* * * *
34498185 TAAACAAAGATGGGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAG--GCGATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * *
34498250 TTTCGCATTTGCTCAAAATAATCGAATATCACTTTAAAATTTCGCTCGTGTCTTTTAAAATCCCT
64 TTTCGCATTTGCTCAAAATAATCGAATATC-CCTTCAAATTTCACTCG-GTCTTTTAAAATCCCT
* * * *
34498315 AAAACGAAGGCGATATGTGGTATTTGGCAATTCGTGGGATCGTGCCCTAACGTGTTGGGTAGCAA
1 AAAACGAAGGCGAT-T-TGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * * *
34498380 TTTCTCGA-TTGTTTAAAATAATCAAATATCCCTTCACAATTTCACTCGGCTCTTCTAAAAATCC
64 TTTCGC-ATTTGCTCAAAATAATCGAATATCCCTTCA-AATTTCACTCGG-TCTT-TTAAAATCC
*
34498444 ATT
125 -CT
*
34498447 AAAATGAAGGC
1 AAAACGAAGGC
34498458 AATACTCGGT
Statistics
Matches: 231, Mismatches: 31, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
128 4 0.02
129 6 0.03
130 197 0.85
131 12 0.05
132 12 0.05
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (126 bp):
AAAACGAAGGCGATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATT
TCGCATTTGCTCAAAATAATCGAATATCCCTTCAAATTTCACTCGGTCTTTTAAAATCCCT
Found at i:34506658 original size:47 final size:47
Alignment explanation
Indices: 34506604--34506891 Score: 405
Period size: 47 Copynumber: 6.1 Consensus size: 47
34506594 TTAGGATTTT
** * *
34506604 ATGTGATGAATGTGAATGTGTATATATGTGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34506651 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34506698 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
34506745 ATGTAATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
34506792 ATGTGAAGAATGTTAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34506839 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34506886 ATGTGA
1 ATGTGA
34506892 AATATATATG
Statistics
Matches: 211, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 211 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34506723 original size:94 final size:94
Alignment explanation
Indices: 34506625--34506931 Score: 393
Period size: 94 Copynumber: 3.3 Consensus size: 94
34506615 GTGAATGTGT
* * *
34506625 ATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
**
34506690 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGAAGAATATGAACATGC
* *
34506719 ATATATGTGATAAGGCCGAATGGCCTATGTAATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
* * *
34506784 AATGGCCAATGTGAAGAATGTTAGCATGC
66 AATGGCCAATGTGAAGAATATGAACATGC
* * * * *
34506813 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
* * *
34506878 AATGGTCAATGTGAAATATATATGAGATATG-
66 AATGGCCAATGTG-AAGA-ATATGA-ACATGC
* *
34506909 -TATATGTGGTAAAGCCGAATGGC
1 ATATATGTGATAAGGCCGAATGGC
34506932 TAGTGTGAAA
Statistics
Matches: 184, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
94 154 0.84
95 23 0.12
96 4 0.02
97 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
AATGGCCAATGTGAAGAATATGAACATGC
Found at i:34506826 original size:141 final size:141
Alignment explanation
Indices: 34506603--34506882 Score: 479
Period size: 141 Copynumber: 2.0 Consensus size: 141
34506593 TTTAGGATTT
* ** * * *
34506603 TATGTGATGAATGTGAATGTGTATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTAATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGAAGAATGTGAGC
*
34506668 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
34506733 GCCGAATGGCC
131 GCCGAATGGCC
*
34506744 TATGTAATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGAAGAATGTTAGC
1 TATGTAATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGAAGAATGTGAGC
*
34506809 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
34506874 GCCGAATGG
131 GCCGAATGG
34506883 TCAATGTGAA
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 130 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTAATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGAAGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:34506973 original size:141 final size:139
Alignment explanation
Indices: 34506625--34506940 Score: 411
Period size: 141 Copynumber: 2.2 Consensus size: 139
34506615 GTGAATGTGT
* * * * *
34506625 ATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGAAGAATGTTAGCATGCATATATGTGAT-AGGCCG
* *
34506690 AATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCTATGTAATGAA
65 AATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTAATGAA
*
34506755 TGTGAACATG
130 TATGAACATG
* *
34506765 CATATATGTGATAAGGCCGAATGGCCAATGTGAAGAATGTTAGCATGCATATGTGTGATAAGGCC
1 -ATATATGTGATAAAGCCGAATGGCCAATGTGAAGAATGTTAGCATGCATATATGTGAT-AGGCC
* *
34506830 GAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCAATGTGAAAT
64 GAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGT--AAT
*
34506895 -ATATATGAGATATG
127 GA-ATATGA-ACATG
* * *
34506909 -TATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATATGTGATAAAGCCGAATGGCCAATGTGAA
34506941 ATATGTAGGC
Statistics
Matches: 158, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
141 117 0.74
142 29 0.18
143 8 0.05
144 4 0.03
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (139 bp):
ATATATGTGATAAAGCCGAATGGCCAATGTGAAGAATGTTAGCATGCATATATGTGATAGGCCGA
ATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTAATGAAT
ATGAACATG
Found at i:34507144 original size:37 final size:37
Alignment explanation
Indices: 34507094--34507279 Score: 284
Period size: 37 Copynumber: 5.1 Consensus size: 37
34507084 GGAAATATAT
*
34507094 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34507131 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
34507168 TCCGGGTAAGACCCGATGAATACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
34507205 TCCGGGTAAGATCCGATGACTACGTGTGGAGATTTTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
34507242 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT-TG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
34507278 TC
1 TC
34507280 TGAGCTAAAG
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
36 3 0.02
37 134 0.98
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34510301 original size:8 final size:8
Alignment explanation
Indices: 34510290--34510314 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
34510280 CTAAAGTGTT
34510290 AAAATGTG
1 AAAATGTG
34510298 AAAATGTG
1 AAAATGTG
34510306 AAAATGTG
1 AAAATGTG
34510314 A
1 A
34510315 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:34510730 original size:43 final size:42
Alignment explanation
Indices: 34510677--34510846 Score: 139
Period size: 43 Copynumber: 4.0 Consensus size: 42
34510667 TAGGATTCCG
*
34510677 ATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATC
1 ATATTTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATC
* * * * * *
34510719 GACT-TATGATTTATGTGTAAGACCATGTCTAGGACATCGACATC
1 -A-TATTTGATTT-CGTGTAAGACCACGTCTGGGACATTGGCATC
* * *
34510763 ATATTTGATTTTGTGTAAGACC-CTGT-TGGGGACAGTGGCGTC
1 ATATTTGATTTCGTGTAAGACCAC-GTCT-GGGACATTGGCATC
* * **
34510805 AATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 -ATATTTGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
34510847 TGTACCATCT
Statistics
Matches: 99, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
41 1 0.01
42 23 0.23
43 46 0.46
44 29 0.29
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (42 bp):
ATATTTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:34510737 original size:44 final size:42
Alignment explanation
Indices: 34510677--34510784 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 42
34510667 TAGGATTCCG
* * * * *
34510677 ATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATC
1 ATATATGATTTTGTGTAAGACCACGTCTAGGACATCGACATC
*
34510719 GACT-TATGATTTATGTGTAAGACCATGTCTAGGACATCGACATC
1 -A-TATATGATTT-TGTGTAAGACCACGTCTAGGACATCGACATC
*
34510763 ATATTTGATTTTGTGTAAGACC
1 ATATATGATTTTGTGTAAGACC
34510785 CTGTTGGGGA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 12 0.22
43 16 0.29
44 27 0.49
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (42 bp):
ATATATGATTTTGTGTAAGACCACGTCTAGGACATCGACATC
Found at i:34511513 original size:27 final size:26
Alignment explanation
Indices: 34511490--34511551 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
34511480 TGAGGAACTG
*
34511490 GTAAGATTATGGCATGAGATGGAATGAA
1 GTAA-ATTAAGGCATGAGATGGAATG-A
*
34511518 GTAAATTAAGGCATGAGATGGAGTGAA
1 GTAAATTAAGGCATGAGATGGAATG-A
34511545 GTAAATT
1 GTAAATT
34511552 GAGGTTATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.40, C:0.03, G:0.31, T:0.26
Consensus pattern (26 bp):
GTAAATTAAGGCATGAGATGGAATGA
Found at i:34518459 original size:27 final size:27
Alignment explanation
Indices: 34518429--34518484 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
34518419 ATGACACATA
34518429 ATATGATAACCAAAATGAACTTAAACC
1 ATATGATAACCAAAATGAACTTAAACC
*
34518456 ATATGATAACTAAAATGAACTTAAACC
1 ATATGATAACCAAAATGAACTTAAACC
34518483 AT
1 AT
34518485 TATCAAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.52, C:0.16, G:0.07, T:0.25
Consensus pattern (27 bp):
ATATGATAACCAAAATGAACTTAAACC
Found at i:34519159 original size:55 final size:56
Alignment explanation
Indices: 34519089--34519279 Score: 269
Period size: 55 Copynumber: 3.4 Consensus size: 56
34519079 TCCCAGACAG
* * *
34519089 GGTCTTACTCACACACATTTACCGAAGTCACATATCGATG-CAACGTATAAAACAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
* * **
34519144 GGTCTTACTCGCACACATATATTGAAGTCACATATCAATGCCAACGTATAAAATGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
** * *
34519200 GGTCTTACTCGTACATATATATCG-AGTCACATATCAATGCCAATGTATAAAACAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
34519255 GGTCTTACTCACACACATATATCGA
1 GGTCTTACTCACACACATATATCGA
34519280 TGCCATGGTC
Statistics
Matches: 118, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
55 84 0.71
56 34 0.29
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
Found at i:34521331 original size:56 final size:56
Alignment explanation
Indices: 34521269--34521457 Score: 317
Period size: 56 Copynumber: 3.4 Consensus size: 56
34521259 AAACAGGATA
34521269 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACATGGTC
1 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACATGGTC
* * *
34521325 TTACTCGCACACATATATTGAAGTCACATATCGGTGCCAACGTATAAAACATGGTC
1 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACATGGTC
* *
34521381 TTACTCGCACATATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGG-C
1 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACATGGTC
34521436 GTTACTCGCACACATATATCGA
1 -TTACTCGCACACATATATCGA
34521458 TGCCATGGTC
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
55 1 0.01
56 122 0.99
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.26
Consensus pattern (56 bp):
TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACATGGTC
Found at i:34521804 original size:15 final size:15
Alignment explanation
Indices: 34521784--34521812 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34521774 GTTCTTGATC
34521784 TAAACTTATTCAAAT
1 TAAACTTATTCAAAT
34521799 TAAACTTATTCAAA
1 TAAACTTATTCAAA
34521813 CATATTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAACTTATTCAAAT
Found at i:34523024 original size:177 final size:177
Alignment explanation
Indices: 34522728--34523073 Score: 566
Period size: 177 Copynumber: 2.0 Consensus size: 177
34522718 GGTTGTTACA
* *
34522728 CATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACACATGTTTTGGCGTTCGGGTACTGGTCTC
1 CATTGAGTTATGGTCTGAGTTCATGATGTATGTGACACATGTTTTGGCATTCGGGTACTGGTCTC
** * *
34522793 GTATATTCTATCATTGGATGGGTAGTCTGACATGTGTTACAAATACCTGACAGCCTATTTGAGCA
66 ACATATTCTACCATTGGATGGGTAGTCCGACATGTGTTACAAATACCTGACAGCCTATTTGAGCA
* * *
34522858 GACCCGTAAGTAGCTCGAAAATGAGCAAGATGTGTTATGGTCTGAAT
131 AACCCGTAAGTAGCTCGAAAACGAGCAACATGTGTTATGGTCTGAAT
34522905 CATTGAGTTATGGTCTGAGTTCATGATGTATGTGACACATGTTTTGGCATTCGGGTACTGGTCTC
1 CATTGAGTTATGGTCTGAGTTCATGATGTATGTGACACATGTTTTGGCATTCGGGTACTGGTCTC
* * *
34522970 ACATATTCTACCGTTGGCTGGGTAGTCCGACATGTGTTACGAATACCTGACAGCCTATTTGAGCA
66 ACATATTCTACCATTGGATGGGTAGTCCGACATGTGTTACAAATACCTGACAGCCTATTTGAGCA
* *
34523035 AACCCGTGAGTAGCTCGAAAGCGAGCAACATGTGTTATG
131 AACCCGTAAGTAGCTCGAAAACGAGCAACATGTGTTATG
34523074 TGATATGAGG
Statistics
Matches: 155, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
177 155 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (177 bp):
CATTGAGTTATGGTCTGAGTTCATGATGTATGTGACACATGTTTTGGCATTCGGGTACTGGTCTC
ACATATTCTACCATTGGATGGGTAGTCCGACATGTGTTACAAATACCTGACAGCCTATTTGAGCA
AACCCGTAAGTAGCTCGAAAACGAGCAACATGTGTTATGGTCTGAAT
Found at i:34529239 original size:27 final size:27
Alignment explanation
Indices: 34529208--34529385 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34529198 TAAATTGTAC
34529208 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34529235 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34529261 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34529289 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34529317 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34529344 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34529371 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34529386 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34529322 original size:82 final size:81
Alignment explanation
Indices: 34529209--34529364 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34529199 AAATTGTACA
* *
34529209 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34529273 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34529290 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34529355 TGCGAGTTGA
65 TGCGAATTGA
34529365 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34529376 original size:82 final size:81
Alignment explanation
Indices: 34529205--34529385 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34529195 GATTAAATTG
* *
34529205 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34529270 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34529286 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34529350 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34529368 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34529386 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34537348 original size:27 final size:27
Alignment explanation
Indices: 34537317--34537494 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34537307 TAAATTGTAC
34537317 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34537344 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34537370 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34537398 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34537426 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34537453 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34537480 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34537495 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34537431 original size:82 final size:81
Alignment explanation
Indices: 34537318--34537473 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34537308 AAATTGTACA
* *
34537318 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34537382 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34537399 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34537464 TGCGAGTTGA
65 TGCGAATTGA
34537474 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34537485 original size:82 final size:81
Alignment explanation
Indices: 34537314--34537494 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34537304 GATTAAATTG
* *
34537314 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34537379 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34537395 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34537459 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34537477 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34537495 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34545467 original size:27 final size:27
Alignment explanation
Indices: 34545436--34545613 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34545426 TAAATTGTAC
34545436 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34545463 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34545489 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34545517 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34545545 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34545572 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34545599 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34545614 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34545550 original size:82 final size:81
Alignment explanation
Indices: 34545437--34545592 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34545427 AAATTGTACA
* *
34545437 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34545501 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34545518 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34545583 TGCGAGTTGA
65 TGCGAATTGA
34545593 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34545604 original size:82 final size:81
Alignment explanation
Indices: 34545433--34545613 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34545423 GATTAAATTG
* *
34545433 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34545498 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34545514 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34545578 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34545596 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34545614 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34560310 original size:23 final size:23
Alignment explanation
Indices: 34560280--34560327 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
34560270 AATTTGTGAC
34560280 GAAATAGAATTGATAAATGATTT
1 GAAATAGAATTGATAAATGATTT
34560303 GAAATAGAATTGATAAATGATTT
1 GAAATAGAATTGATAAATGATTT
34560326 GA
1 GA
34560328 GAACTACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (23 bp):
GAAATAGAATTGATAAATGATTT
Found at i:34563231 original size:26 final size:26
Alignment explanation
Indices: 34563201--34563250 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
34563191 CAATATGAAG
*
34563201 AAATGACTGTTATACCCCTATGTGGT
1 AAATGACTGATATACCCCTATGTGGT
34563227 AAATGACTGATATACCCCTATGTG
1 AAATGACTGATATACCCCTATGTG
34563251 ATGTATGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
AAATGACTGATATACCCCTATGTGGT
Found at i:34563258 original size:26 final size:26
Alignment explanation
Indices: 34563201--34563261 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
34563191 CAATATGAAG
* *
34563201 AAATGACTGTTATACCCCTATGTGGT
1 AAATGACTGATATACCCCTATGTGAT
34563227 AAATGACTGATATACCCCTATGTGAT
1 AAATGACTGATATACCCCTATGTGAT
**
34563253 GTATGACTG
1 AAATGACTG
34563262 GTTGAGCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (26 bp):
AAATGACTGATATACCCCTATGTGAT
Found at i:34565440 original size:13 final size:13
Alignment explanation
Indices: 34565422--34565474 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
34565412 GAGTCTGTAG
34565422 AAAAAGTAAAAGA
1 AAAAAGTAAAAGA
34565435 AAAAAGT--AAGA
1 AAAAAGTAAAAGA
* *
34565446 AAAAAATAAAAAA
1 AAAAAGTAAAAGA
34565459 AAAAAG-ACAAAGA
1 AAAAAGTA-AAAGA
34565472 AAA
1 AAA
34565475 GAAAATCGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 10 0.30
12 1 0.03
13 22 0.67
ACGTcount: A:0.81, C:0.02, G:0.11, T:0.06
Consensus pattern (13 bp):
AAAAAGTAAAAGA
Found at i:34565445 original size:11 final size:11
Alignment explanation
Indices: 34565431--34565479 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
34565421 GAAAAAGTAA
*
34565431 AAGAAAAAAGT
1 AAGAAAAAAAT
34565442 AAGAAAAAAAT
1 AAGAAAAAAAT
34565453 AA-AAAAAAA-
1 AAGAAAAAAAT
*
34565462 AAGACAAAGAA-
1 AAGA-AAAAAAT
34565473 AAGAAAA
1 AAGAAAA
34565480 TCGAGAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 2 0.06
10 11 0.32
11 21 0.62
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (11 bp):
AAGAAAAAAAT
Found at i:34565499 original size:21 final size:21
Alignment explanation
Indices: 34565471--34565510 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
34565461 AAAGACAAAG
34565471 AAAAGAAAAT-CGAGAAAAAA
1 AAAAGAAAATGCGAGAAAAAA
*
34565491 AAAAGGAAAATGTGAGAAAA
1 AAAA-GAAAATGCGAGAAAA
34565511 TTTAGGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 6 0.35
22 7 0.41
ACGTcount: A:0.70, C:0.03, G:0.20, T:0.07
Consensus pattern (21 bp):
AAAAGAAAATGCGAGAAAAAA
Found at i:34572557 original size:9 final size:9
Alignment explanation
Indices: 34572543--34572568 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
34572533 TAAAGACACA
34572543 AACTAAAAT
1 AACTAAAAT
34572552 AACTAAAAT
1 AACTAAAAT
34572561 AACTAAAA
1 AACTAAAA
34572569 ATAAATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:34574167 original size:27 final size:28
Alignment explanation
Indices: 34574137--34574194 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
34574127 TCAATCTCTT
34574137 TTTCAACT-TTTTTTTCTTTTT-ATTTTC
1 TTTC-ACTCTTTTTTTCTTTTTCATTTTC
* *
34574164 TTTCATTCTTTTTTTCTTTTTCTTTTTC
1 TTTCACTCTTTTTTTCTTTTTCATTTTC
34574192 TTT
1 TTT
34574195 TTTTTCACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 2 0.07
27 17 0.63
28 8 0.30
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (28 bp):
TTTCACTCTTTTTTTCTTTTTCATTTTC
Found at i:34576482 original size:13 final size:13
Alignment explanation
Indices: 34576456--34576490 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
34576446 CCAAAACAAC
*
34576456 TTAATAAGCTTAA
1 TTAATAAACTTAA
*
34576469 TTATTAAACTTAA
1 TTAATAAACTTAA
34576482 TTAATAAAC
1 TTAATAAAC
34576491 ACAATTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (13 bp):
TTAATAAACTTAA
Found at i:34578887 original size:68 final size:67
Alignment explanation
Indices: 34578815--34578964 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
34578805 CATCATGTGT
* * * *
34578815 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
34578877 ATGTAG
62 ATGTAG
** * *
34578883 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
34578948 AG
66 AG
34578950 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
34578965 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:34578920 original size:64 final size:64
Alignment explanation
Indices: 34578839--34579018 Score: 186
Period size: 67 Copynumber: 2.8 Consensus size: 64
34578829 AGACATTATG
* *
34578839 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
34578903 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
34578968 AA
63 AA
* * * *
34578970 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGA
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGA
34579019 CAGCCAAACT
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 21 0.22
65 8 0.09
66 16 0.17
67 31 0.33
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:34587755 original size:21 final size:21
Alignment explanation
Indices: 34587712--34587757 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
34587702 AAGAAAAAAA
**
34587712 GAAATGAAAGAAAAAGAGTGT
1 GAAATGAAAGAAAAAGAAAGT
34587733 GAAA-GAAAGCAAAAAGAAAGT
1 GAAATGAAAG-AAAAAGAAAGT
34587754 GAAA
1 GAAA
34587758 AAGAAAAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.63, C:0.02, G:0.26, T:0.09
Consensus pattern (21 bp):
GAAATGAAAGAAAAAGAAAGT
Found at i:34587797 original size:17 final size:17
Alignment explanation
Indices: 34587703--34587802 Score: 57
Period size: 17 Copynumber: 5.8 Consensus size: 17
34587693 AGAATTTAAA
*
34587703 AGAA-AAAAAGAA-ATG
1 AGAAGAAAAAGAATGTG
*
34587718 A-AAGAAAAAGAGTGTG
1 AGAAGAAAAAGAATGTG
*
34587734 AAAGAAAGCAAAAAGAAAGTG
1 --AG-AAG-AAAAAGAATGTG
*
34587755 A-AAAAGAAAAGAGATCGTG
1 AGAAGA-AAAAGA-AT-GTG
*
34587774 AG-TGAAAAAGAATGTG
1 AGAAGAAAAAGAATGTG
34587790 AGAAGAAAAAGAA
1 AGAAGAAAAAGAA
34587803 AATTGAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 22
0.67 0.09 0.23
Matches are distributed among these distances:
14 2 0.03
15 8 0.12
16 8 0.12
17 19 0.30
18 8 0.12
19 6 0.09
20 3 0.05
21 10 0.16
ACGTcount: A:0.63, C:0.02, G:0.26, T:0.09
Consensus pattern (17 bp):
AGAAGAAAAAGAATGTG
Found at i:34597034 original size:30 final size:30
Alignment explanation
Indices: 34596989--34597048 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34596979 ATTTAATTTG
*
34596989 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
* *
34597019 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
34597049 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:34607441 original size:29 final size:30
Alignment explanation
Indices: 34607405--34607478 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 30
34607395 ATTAAATGAA
*
34607405 AGAAAAAAAAAGAAAATTGAGAAA-AAAA-G
1 AGAAAAAAAAAGAAAAGTGA-AAAGAAAATG
34607434 AGGAAAAACAAAA-AAAAGTGAAAAGAAAATG
1 A-GAAAAA-AAAAGAAAAGTGAAAAGAAAATG
34607465 AGAAAAGAAAAAGA
1 AGAAAA-AAAAAGA
34607479 TGAAAAAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
29 4 0.11
30 26 0.68
31 8 0.21
ACGTcount: A:0.74, C:0.01, G:0.19, T:0.05
Consensus pattern (30 bp):
AGAAAAAAAAAGAAAAGTGAAAAGAAAATG
Found at i:34607492 original size:15 final size:14
Alignment explanation
Indices: 34607446--34607493 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 14
34607436 GAAAAACAAA
34607446 AAAAAG-TGAAAAG
1 AAAAAGATGAAAAG
*
34607459 AAAATGA-GAAAAG
1 AAAAAGATGAAAAG
34607472 AAAAAGATGAAAAAG
1 AAAAAGATG-AAAAG
34607487 AAAAAGA
1 AAAAAGA
34607494 ATGTGAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 17 0.57
14 1 0.03
15 12 0.40
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (14 bp):
AAAAAGATGAAAAG
Found at i:34610094 original size:46 final size:46
Alignment explanation
Indices: 34610041--34610177 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
34610031 TATATATACA
* * * * *
34610041 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACGTATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * * *
34610087 CATCTCATACACGTTTTGCATTAGCCACTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
**
34610133 CATCTCATACACATTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
34610178 ATACACTTCC
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:34610222 original size:47 final size:47
Alignment explanation
Indices: 34610185--34610367 Score: 287
Period size: 47 Copynumber: 3.9 Consensus size: 47
34610175 TATATACACT
* * *
34610185 TCCACGTTCATCACATTGGCCATTCTACCTTATCACATATATGCATG
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
* *
34610232 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
*
34610279 -CTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
1 TC-CACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
*
34610326 TTCACATTCATCACATTGGCCATTCGACCTTATCACACATAT
1 TCCACATTCATCACATTGGCCATTCGACCTTATCACACATAT
34610368 TCGGCCTTAT
Statistics
Matches: 126, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
TCCACATTCATCACATTGGCCATTCGACCTTATCACACATATGCATG
Found at i:34610321 original size:94 final size:94
Alignment explanation
Indices: 34610191--34610367 Score: 318
Period size: 94 Copynumber: 1.9 Consensus size: 94
34610181 CACTTCCACG
* *
34610191 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
*
34610256 CGGCCTTATCACACATATGCATGCTCACA
66 CGACCTTATCACACATATGCATGCTCACA
*
34610285 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
34610350 CGACCTTATCACACATAT
66 CGACCTTATCACACATAT
34610368 TCGGCCTTAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 79 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (94 bp):
TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
CGACCTTATCACACATATGCATGCTCACA
Found at i:34610375 original size:19 final size:19
Alignment explanation
Indices: 34610347--34610386 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
34610337 CACATTGGCC
34610347 ATTCGACCTTATCACACAT
1 ATTCGACCTTATCACACAT
* *
34610366 ATTCGGCCTTATCATACAT
1 ATTCGACCTTATCACACAT
34610385 AT
1 AT
34610387 GCATGTTCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (19 bp):
ATTCGACCTTATCACACAT
Found at i:34610377 original size:66 final size:66
Alignment explanation
Indices: 34610300--34610433 Score: 232
Period size: 66 Copynumber: 2.0 Consensus size: 66
34610290 CACATTGGCC
34610300 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACA
34610365 T
66 T
* * * *
34610366 ATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATTACATA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACA
34610431 T
66 T
34610432 AT
1 AT
34610434 GCATGCTCAC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACA
T
Done.