Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 108 of 332
Found at i:34610420 original size:47 final size:47
Alignment explanation
Indices: 34610366--34610455 Score: 144
Period size: 47 Copynumber: 1.9 Consensus size: 47
34610356 TATCACACAT
* *
34610366 ATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
* *
34610413 ATTCGGCCTTATTACATATATGCATGCTCACATTCATCACATT
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
34610456 AAAATCCTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.36
Consensus pattern (47 bp):
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
Found at i:34619777 original size:47 final size:47
Alignment explanation
Indices: 34619725--34620132 Score: 620
Period size: 47 Copynumber: 8.6 Consensus size: 47
34619715 GATAATTGTG
* *
34619725 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34619772 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34619821 ATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
34619870 TTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34619917 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34619966 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34620013 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
34620060 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
34620107 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
34620133 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 19, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
46 2 0.01
47 197 0.59
48 2 0.01
49 128 0.38
51 5 0.01
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:34619911 original size:96 final size:96
Alignment explanation
Indices: 34619725--34620132 Score: 641
Period size: 96 Copynumber: 4.3 Consensus size: 96
34619715 GATAATTGTG
34619725 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34619788 ACATGTGATAAGGCCTAATGGCCGATGTGATGA
66 --ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
34619821 ATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGATTGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
34619886 ATGTGATAAGGCCTAATGGCTGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
34619917 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
34619982 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34620013 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
34620076 ATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAG-GCCTAATGGCCGATGTGATGA
34620107 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
34620133 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
93 2 0.01
94 92 0.32
95 1 0.00
96 140 0.48
97 2 0.01
98 54 0.19
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:34622235 original size:43 final size:43
Alignment explanation
Indices: 34622187--34622289 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
34622177 TTGGTTTTCA
34622187 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
34622230 GCACTAAGTGTGCGGGTAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34622273 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
34622290 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:34622306 original size:29 final size:29
Alignment explanation
Indices: 34622271--34622344 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
34622261 GTTGTGAGAT
* *
34622271 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
34622300 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
34622329 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34622345 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:34622775 original size:40 final size:40
Alignment explanation
Indices: 34622731--34622954 Score: 383
Period size: 40 Copynumber: 5.8 Consensus size: 40
34622721 GAGTTACTAA
34622731 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
34622771 ATCCGGGCTAAGTCCCGAA-AGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
34622810 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
34622850 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
34622890 ATCC--GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
34622928 ATCC--G---AGTCCCGAAGAGCATATCATGC
1 ATCCGGGCTAAGTCCCGAAGAGCAT-TCATGC
34622955 CGTGCTAAAT
Statistics
Matches: 182, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
35 15 0.08
36 6 0.03
38 39 0.21
39 39 0.21
40 83 0.46
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:34622789 original size:80 final size:79
Alignment explanation
Indices: 34622652--34622932 Score: 374
Period size: 80 Copynumber: 3.6 Consensus size: 79
34622642 TCGAATGATG
** ** *
34622652 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGGCA
** * * **
34622714 TTGGTGCGAGTTACTAAA
63 TTCATGCTAGTGA-TGTA
*
34622732 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAAGCATTC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGGCATTC
34622797 ATGCTAGTGATGTA
66 ATGCTAGTGATGTA
34622811 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG-GCATT
34622876 CATGCTAGTGATGTA
65 CATGCTAGTGATGTA
34622891 TCC--GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
34622933 AGTCCCGAAG
Statistics
Matches: 184, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
78 39 0.21
79 61 0.33
80 71 0.39
81 7 0.04
82 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGGCATTC
ATGCTAGTGATGTA
Found at i:34622831 original size:79 final size:80
Alignment explanation
Indices: 34622731--34622954 Score: 383
Period size: 79 Copynumber: 2.9 Consensus size: 80
34622721 GAGTTACTAA
34622731 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA-AGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
34622795 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
34622810 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
34622875 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
34622890 ATCC--GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC--G---AGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
34622948 ATCATGC
66 -TCATGC
34622955 CGTGCTAAAT
Statistics
Matches: 143, Mismatches: 0, Indels: 9
0.94 0.00 0.06
Matches are distributed among these distances:
73 15 0.10
74 6 0.04
76 1 0.01
78 38 0.27
79 59 0.41
80 24 0.17
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATGT
Found at i:34622961 original size:119 final size:115
Alignment explanation
Indices: 34622731--34622954 Score: 373
Period size: 119 Copynumber: 1.9 Consensus size: 115
34622721 GAGTTACTAA
34622731 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAAGCATT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC-GGCTAAGTCCCGAAAGCATT
34622796 CATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
65 CATGCTAGTGATGTATCC-GG--AAGTCCCGAAGAGCATTCATGCTAGTGATGT
34622850 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC-GCTAAGTCCCGAAGAGCATT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGCTAAGTCCCGAA-AGCATT
34622914 CATGCTAGTGATGTATCC-G-AGTCCCGAAGAGCATATCATGC
65 CATGCTAGTGATGTATCCGGAAGTCCCGAAGAGCAT-TCATGC
34622955 CGTGCTAAAT
Statistics
Matches: 103, Mismatches: 0, Indels: 9
0.92 0.00 0.08
Matches are distributed among these distances:
113 15 0.15
114 6 0.06
116 1 0.01
117 13 0.13
118 24 0.23
119 44 0.43
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (115 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGCTAAGTCCCGAAAGCATTC
ATGCTAGTGATGTATCCGGAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:34626610 original size:47 final size:47
Alignment explanation
Indices: 34626558--34627014 Score: 700
Period size: 47 Copynumber: 9.6 Consensus size: 47
34626548 GATAATTGTG
* *
34626558 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34626605 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34626654 ATGTGAAAGTGTATATACATGTGATATGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34626703 ATGTGAAAGTGTATATATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34626754 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34626801 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34626848 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34626895 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
34626942 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
34626989 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
34627015 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 17, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
46 2 0.01
47 244 0.64
48 7 0.02
49 85 0.22
51 40 0.10
53 5 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:34630939 original size:16 final size:16
Alignment explanation
Indices: 34630912--34630954 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
34630902 GCAAAAGTTG
* * *
34630912 AAAAGCCGAAATGCCG
1 AAAAGCCAAAATACCC
*
34630928 AAAAGTCAAAATACCC
1 AAAAGCCAAAATACCC
34630944 AAAAGCCAAAA
1 AAAAGCCAAAA
34630955 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.23, G:0.14, T:0.07
Consensus pattern (16 bp):
AAAAGCCAAAATACCC
Found at i:34631096 original size:18 final size:19
Alignment explanation
Indices: 34631063--34631098 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
34631053 ATTTGGCCAT
34631063 ATGGGCCAGAATGGGCTAA
1 ATGGGCCAGAATGGGCTAA
*
34631082 ATGGGCCTG-ATGGGCTA
1 ATGGGCCAGAATGGGCTA
34631099 TTGGACCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.17, G:0.39, T:0.19
Consensus pattern (19 bp):
ATGGGCCAGAATGGGCTAA
Found at i:34631219 original size:29 final size:29
Alignment explanation
Indices: 34631177--34631278 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
34631167 TGAATGTGGC
*
34631177 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
34631206 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
34631235 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
34631263 TGGTCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
34631279 GATACAGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 15 0.23
29 49 0.77
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:34631249 original size:58 final size:57
Alignment explanation
Indices: 34631177--34631287 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
34631167 TGAATGTGGC
* *
34631177 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* * * *
34631235 TGGGCCTAATGGGCCATATGAATATGATTGGTCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
34631288 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:34632329 original size:20 final size:21
Alignment explanation
Indices: 34632300--34632345 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
34632290 GTAACTGAAA
* *
34632300 GGTTTTTTTTA-GTTAATAAG
1 GGTTTCTTTTATGTTAAGAAG
*
34632320 GGTTTCTTTTATTTTAAGAAG
1 GGTTTCTTTTATGTTAAGAAG
34632341 GGTTT
1 GGTTT
34632346 TCAATGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (21 bp):
GGTTTCTTTTATGTTAAGAAG
Found at i:34637394 original size:180 final size:180
Alignment explanation
Indices: 34637136--34637472 Score: 514
Period size: 180 Copynumber: 1.9 Consensus size: 180
34637126 TAAGATACAT
* * * * *
34637136 TAATTTTCCCAAAAACTATACTCACATATATTTTTACCATCAAATTTTTATAATTTTTGGTGCAG
1 TAATTTTCCCAAAAACTAGACTCACACATATTCTTACCATAAAATTTTTAGAATTTTTGGTGCAG
*
34637201 CCAATTAGTACAGTTTATTCATTAAA-ATTACCCCTATTTCACTGTCCAATAGTTCCGACCTCTC
66 CCAATTAGTACAGTTTATTCATTAAAGA-TACCCCTATTTCACTGTCCAACAGTTCCGACCTCTC
34637265 TTCACTAAAAAATATTTATCTCATGGTACGAGACTCTAAATTAAAAACTAC
130 TTCACTAAAAAATATTTATCTCATGGTACGAGACTCTAAATTAAAAACTAC
**
34637316 TAATTTTCCCAAAAACTAGACTCACACATATTCTTACCATAAAATTTTTAGAATTTTTGGTTTAG
1 TAATTTTCCCAAAAACTAGACTCACACATATTCTTACCATAAAATTTTTAGAATTTTTGGTGCAG
* * ** * * *
34637381 CCAATTTGTACAGTTTATTCATTAAAGATACCCCTGTTTCACTGTCTGACAGTTTCGATCTTTCT
66 CCAATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGTCCAACAGTTCCGACCTCTCT
*
34637446 TCACTAAAAATTATTTATCTCATGGTA
131 TCACTAAAAAATATTTATCTCATGGTA
34637473 AAGATCTCGG
Statistics
Matches: 140, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
180 139 0.99
181 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (180 bp):
TAATTTTCCCAAAAACTAGACTCACACATATTCTTACCATAAAATTTTTAGAATTTTTGGTGCAG
CCAATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGTCCAACAGTTCCGACCTCTCT
TCACTAAAAAATATTTATCTCATGGTACGAGACTCTAAATTAAAAACTAC
Found at i:34638172 original size:51 final size:49
Alignment explanation
Indices: 34638108--34638340 Score: 213
Period size: 51 Copynumber: 4.7 Consensus size: 49
34638098 ATCCATCTGA
* *
34638108 TACACGTAGTAGCCTGCACTTATTACTACACACAAGATCGAAGTTAACGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACAAGATCGAAGTT--CGGG
* * *
34638159 TACACATAGTAGCCTGTACTTAGTACTACACATGCAACCTATC-AA--TCCGG
1 TACACATAGTAGCCTGCACTTAGTACTACACA--CAA--GATCGAAGTTCGGG
* * ** * * * * *
34638209 TACACGTAGTAGCCTGCACTTAGTACTACTCACTTGACCTAACATT-TGA
1 TACACATAGTAGCCTGCACTTAGTACTACACACAAGATCGAA-GTTCGGG
*
34638258 TACACATAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACAAGATCGAAG-T-TCGGG
*
34638309 TACGCATAGTAGCCTGCACTTAGTACTACACA
1 TACACATAGTAGCCTGCACTTAGTACTACACA
34638341 TGGAACCTAA
Statistics
Matches: 148, Mismatches: 23, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
46 2 0.01
47 2 0.01
48 1 0.01
49 39 0.26
50 34 0.23
51 61 0.41
52 1 0.01
53 3 0.02
54 2 0.01
55 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACAAGATCGAAGTTCGGG
Found at i:34638291 original size:101 final size:100
Alignment explanation
Indices: 34638014--34638399 Score: 370
Period size: 101 Copynumber: 3.9 Consensus size: 100
34638004 CTGGTACGCA
* * * *
34638014 TAGTAGCATGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACAT-TGACCTAACAATCTGGTACACATAGTAGCCTGCACTT
* * * * * *
34638079 AGTACTATACACGTG-ACTTATCCATCTGATACACG
65 AGTACTACACACATGAACCTATCAATCCGGTACACG
* ** * * * * *
34638114 TAGTAGCCTGCACTTATTACTACACACAAGATCGAAGTTAA-CGGGTACACATAGTAGCCTGTAC
1 TAGTAGCCTGCACTTAGTACTACACA-TTGACCTAA--CAATCTGGTACACATAGTAGCCTGCAC
34638178 TTAGTACT--ACACATGCAACCTATCAATCCGGTACACG
63 TTAGTACTACACACATG-AACCTATCAATCCGGTACACG
* * *
34638215 TAGTAGCCTGCACTTAGTACTACTCACTTGACCTAAC-ATTTGATACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACA-TTGACCTAACAATCTGGTACACATAGTAGCCTGCACTT
* ** * * * * *
34638279 AGTACTACACACATGATCGAAGCTATCGGGTACGCA
65 AGTACTACACACATGAACCTATCAATCCGGTACACG
* * *
34638315 TAGTAGCCTGCACTTAGTACTACACATGGAACCTAACAATCTGGTACACGTAGTTGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATTG-ACCTAACAATCTGGTACACATAGTAGCCTGCACTT
*
34638380 AGTACTACACACGTG-ACCTA
65 AGTACTACACACATGAACCTA
34638400 AAACTATCTT
Statistics
Matches: 230, Mismatches: 46, Indels: 20
0.78 0.16 0.07
Matches are distributed among these distances:
98 1 0.00
99 35 0.15
100 75 0.33
101 117 0.51
102 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATTGACCTAACAATCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACATGAACCTATCAATCCGGTACACG
Found at i:34638322 original size:150 final size:150
Alignment explanation
Indices: 34637995--34638442 Score: 594
Period size: 150 Copynumber: 3.0 Consensus size: 150
34637985 CCCTTGTAAC
* * * **
34637995 CGAAGCTCTCTGGTACGCATAGTAGCATGCACTTAGTACTACACATGTGACCTATCAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTA
* * * * *
34638060 CACGTAGTAGCCTACACTTAGTACTA-TACACGTGACTTATCCATCTGATACACGTAGTAGCCTG
66 CACGTAGTAGCCTGCACTTAGTACTACT-CACGTGACCTA-ACATTTGATACACATAGTAGCCTG
*
34638124 CACTTATTACTACACACAAGAT
129 CACTTAGTACTACACACAAGAT
* * * * *
34638146 CGAAGTTAACGGGTACACATAGTAGCCTGTACTTAGTACTACACATGCAACCTATCAATCCGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTA
*
34638211 CACGTAGTAGCCTGCACTTAGTACTACTCACTTGACCTAACATTTGATACACATAGTAGCCTGCA
66 CACGTAGTAGCCTGCACTTAGTACTACTCACGTGACCTAACATTTGATACACATAGTAGCCTGCA
*
34638276 CTTAGTACTACACACATGAT
131 CTTAGTACTACACACAAGAT
* *
34638296 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGGAACCTAACAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTA
* * *
34638361 CACGTAGTTGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTT-AAACACATAGTAGCC
66 CACGTAGTAGCCTGCACTTAGTACTACTCACGTGACCT--AAC-AT-TTGATACACATAGTAGCC
** *
34638425 TATACATAGTACTACACA
127 TGCACTTAGTACTACACA
34638443 TGTGTTCTCA
Statistics
Matches: 260, Mismatches: 32, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
150 134 0.52
151 89 0.34
152 4 0.02
153 31 0.12
154 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (150 bp):
CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTA
CACGTAGTAGCCTGCACTTAGTACTACTCACGTGACCTAACATTTGATACACATAGTAGCCTGCA
CTTAGTACTACACACAAGAT
Found at i:34638400 original size:50 final size:50
Alignment explanation
Indices: 34638003--34638442 Score: 391
Period size: 50 Copynumber: 8.7 Consensus size: 50
34637993 ACCGAAGCTC
* * * *
34638003 TCTGGTACGCATAGTAGCATGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * *
34638053 TCTGGTACACGTAGTAGCCTACACTTAGTACTATACACGTGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * ** * * *
34638103 TCTGATACACGTAGTAGCCTGCACTTATTACTACACACAAGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAA
* * * ** *
34638155 -CGGGTACACATAGTAGCCTGTACTTAGTACTACACATGCAACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
34638204 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACTCACTTGACCTAAC-A
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * *
34638253 TTTGATACACATAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* * *
34638304 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG-GAACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG-ACCTAACAA
* * *
34638354 TCTGGTACACGTAGTTGCCTGCACTTAGTACTACACACGTGACCTAAAACTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACAA
*** ** *
34638406 TCTTAAACACATAGTAGCCTATACATAGTACTACACA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
34638443 TGTGTTCTCA
Statistics
Matches: 308, Mismatches: 73, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
49 42 0.14
50 159 0.52
51 73 0.24
52 34 0.11
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:34642305 original size:43 final size:44
Alignment explanation
Indices: 34642257--34642345 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
34642247 TAGGATTCCA
* *
34642257 ATATATGT-TTTCGTGTAGGACCATGTCTGGGAC-GTTGGCATTG
1 ATATATGTATTACGTGTAAGACCATGTCTGGGACAG-TGGCATTG
34642300 ATATATGTAGTTACGTGTAAGACCATGTCTGGGACAGTGGCATTG
1 ATATATGTA-TTACGTGTAAGACCATGTCTGGGACAGTGGCATTG
34642345 A
1 A
34642346 GATGAGATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 8 0.20
45 32 0.78
46 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (44 bp):
ATATATGTATTACGTGTAAGACCATGTCTGGGACAGTGGCATTG
Found at i:34642781 original size:19 final size:19
Alignment explanation
Indices: 34642754--34642792 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
34642744 TAAATAAGTG
*
34642754 TATATGTGAAAGCATATGA
1 TATACGTGAAAGCATATGA
*
34642773 TATACGTGAAATCATATGA
1 TATACGTGAAAGCATATGA
34642792 T
1 T
34642793 TAAGGTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (19 bp):
TATACGTGAAAGCATATGA
Found at i:34643136 original size:16 final size:16
Alignment explanation
Indices: 34643112--34643162 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
34643102 GCTTAACTTC
*
34643112 TATGCTTGAATTTGGT
1 TATGTTTGAATTTGGT
*
34643128 TATGTTTGAATATGGTT
1 TATGTTTGAATTTGG-T
* *
34643145 TAAGTTT-ATTTTGGT
1 TATGTTTGAATTTGGT
34643160 TAT
1 TAT
34643163 AATTCTGCGT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 3 0.11
16 18 0.64
17 7 0.25
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.55
Consensus pattern (16 bp):
TATGTTTGAATTTGGT
Found at i:34644950 original size:46 final size:46
Alignment explanation
Indices: 34644883--34645060 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
34644873 GATATTTGGG
*
34644883 CGTCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
34644929 CGTCCGAACTCGTTGAGTTGAGTCCGAGTT-TGTGAAATGTAACTAG-GAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAA
34644978 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * *
34645022 TGCCCGAGCTCGTTGACTTGAGTTCGAGTTCGCTTATGG
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34645061 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 64 0.59
47 31 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:34649982 original size:27 final size:27
Alignment explanation
Indices: 34649923--34650099 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
34649913 TAAATTGTAC
34649923 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
34649949 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
34649975 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
34650003 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
34650031 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
34650058 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
34650085 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34650100 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 14 0.11
27 92 0.71
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:34650036 original size:82 final size:80
Alignment explanation
Indices: 34649924--34650078 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
34649914 AAATTGTACA
* *
34649924 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
34649988 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
34650004 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34650069 TGCGAGTTGA
64 TGCGAATTGA
34650079 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:34650090 original size:82 final size:80
Alignment explanation
Indices: 34649920--34650099 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
34649910 GATTAAATTG
* *
34649920 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
34649985 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
34650000 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34650064 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
34650082 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34650100 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 17 0.20
81 1 0.01
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:34650110 original size:27 final size:27
Alignment explanation
Indices: 34650004--34650110 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
34649994 TGACCATGCG
* * * *
34650004 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
34650032 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
34650059 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
34650086 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
34650111 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:34657667 original size:43 final size:45
Alignment explanation
Indices: 34657595--34657696 Score: 163
Period size: 44 Copynumber: 2.3 Consensus size: 45
34657585 TTGGTTTTCA
34657595 GCACTAAGTGTGCGGGGGCAATAAGTGTTCACG-GTTGTGAGATTG
1 GCACTAAGTGTGC-GGGGCAATAAGTGTTCACGCGTTGTGAGATTG
* *
34657640 GCACCAAGTGTGC-GGGTAATAAGTGTTCACGCGTTGTGAGATTG
1 GCACTAAGTGTGCGGGGCAATAAGTGTTCACGCGTTGTGAGATTG
34657684 GCACTAAGTGTGC
1 GCACTAAGTGTGC
34657697 AGGCTTGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
43 17 0.32
44 24 0.45
45 12 0.23
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (45 bp):
GCACTAAGTGTGCGGGGCAATAAGTGTTCACGCGTTGTGAGATTG
Found at i:34657741 original size:29 final size:30
Alignment explanation
Indices: 34657682--34657753 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 30
34657672 GTTGTGAGAT
*
34657682 TGGCACTAAGTGTGC-AGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGGCTTGAAATACA
*
34657711 TGGCACTAAGTGTGCGA-G-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGGCTTGAAA-TACA
34657740 T-GCACTAAG-GTGCG
1 TGGCACTAAGTGTGCG
34657754 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.13
28 13 0.33
29 20 0.51
30 1 0.03
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGGCTTGAAATACA
Found at i:34658217 original size:40 final size:40
Alignment explanation
Indices: 34658147--34658417 Score: 435
Period size: 40 Copynumber: 6.8 Consensus size: 40
34658137 ACTAAATCGC
34658147 GGCTAAGTCCCGAAAGAAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCG-AAG-AGCATTCATGCTAGTGATGTATCCG
*
34658189 GGCTAAGTCCCGAATAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
34658229 GGCT-AGTCCCGAAGAAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAG-AGCATTCATGCTAGTGATGTATCCG
34658269 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
34658309 CGG--AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 -GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
*
34658348 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
* *
34658388 TGCTAA-TCCCGAAGAGCA-TCATGCTGGTGA
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
34658418 CGTGTATTCG
Statistics
Matches: 219, Mismatches: 5, Indels: 14
0.92 0.02 0.06
Matches are distributed among these distances:
38 13 0.06
39 57 0.26
40 123 0.56
41 14 0.06
42 12 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
Found at i:34789146 original size:9 final size:9
Alignment explanation
Indices: 34789132--34789184 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
34789122 ACAAACATGG
34789132 TATGTATGA
1 TATGTATGA
34789141 TATGTACATGA
1 TATGT--ATGA
*
34789152 CATGTATGA
1 TATGTATGA
*
34789161 TATGCACATGA
1 TATG--TATGA
34789172 TATGTATGA
1 TATGTATGA
34789181 TATG
1 TATG
34789185 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:34789192 original size:20 final size:20
Alignment explanation
Indices: 34789126--34789192 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
34789116 ATTTTGACAA
* *
34789126 ACATGGTATGTATGATATGT
1 ACATGATATGTATGATATGC
*
34789146 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
34789166 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
34789186 ACATGAT
1 ACATGAT
34789193 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:34789280 original size:23 final size:23
Alignment explanation
Indices: 34789241--34789402 Score: 131
Period size: 24 Copynumber: 7.0 Consensus size: 23
34789231 GGAGGAAGTG
34789241 TAAAGGGCTTATGCCCCA-TTATGA
1 TAAAGGGC-TATGCCCCAGTTAT-A
* *
34789265 TAAAGGGCTATGCCCCAATT-GA
1 TAAAGGGCTATGCCCCAGTTATA
**
34789287 TAAAGGGCTTATGCCTTAGTTAT-
1 TAAAGGGC-TATGCCCCAGTTATA
*
34789310 TAAAGGGCTATGCCCTAGTTA-A
1 TAAAGGGCTATGCCCCAGTTATA
*
34789332 TTAAAAGGGCTTTGCCCCAGTTAT-
1 -T-AAAGGGCTATGCCCCAGTTATA
*
34789356 T-AAGGGCTTTGCCCCAGTTAT-
1 TAAAGGGCTATGCCCCAGTTATA
*
34789377 TAAAAGAGGCTAGGCCTCCAGTTATA
1 T-AAAG-GGCTATGCC-CCAGTTATA
34789403 CGATAAAGCA
Statistics
Matches: 116, Mismatches: 10, Indels: 22
0.78 0.07 0.15
Matches are distributed among these distances:
21 21 0.18
22 21 0.18
23 31 0.27
24 35 0.30
25 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (23 bp):
TAAAGGGCTATGCCCCAGTTATA
Found at i:34789375 original size:45 final size:46
Alignment explanation
Indices: 34789242--34789401 Score: 170
Period size: 45 Copynumber: 3.5 Consensus size: 46
34789232 GAGGAAGTGT
*
34789242 AAAGGGCTTATGCCCCA-TTATGATAAAGGGCTATGCCCCAATTGA-T-
1 AAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTATGCCCCAGTT-ATTA
** *
34789288 AAAGGGCTTATGCCTTAGTTATTAAAGGGCTATGCCCTAGTTAATTA
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTATGCCCCAGTT-ATTA
*
34789335 AAAGGGCTT-TGCCCCAGTTATT-AAGGGCTTTGCCCCAGTTATTA
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTATGCCCCAGTTATTA
*
34789379 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
34789402 ACGATAAAGC
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
44 9 0.09
45 41 0.42
46 35 0.36
47 13 0.13
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTATGCCCCAGTTATTA
Found at i:34789630 original size:31 final size:31
Alignment explanation
Indices: 34789595--34789657 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
34789585 CGTTTACAGT
*
34789595 AAAGGCTTCGGCCCAGTAATATGAAGTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
34789626 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
34789657 A
1 A
34789658 GTGTGAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:34792207 original size:79 final size:81
Alignment explanation
Indices: 34792071--34792253 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
34792061 TCGAATGATG
* *
34792071 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34792135 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34792150 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
34792212 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
34792230 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34792254 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:34792269 original size:40 final size:40
Alignment explanation
Indices: 34792072--34792255 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
34792062 CGAATGATGT
* * * *
34792072 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
34792112 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
34792152 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34792190 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34792231 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34792256 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34792277 original size:79 final size:79
Alignment explanation
Indices: 34792124--34792288 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
34792114 GGACTAAGAT
* **
34792124 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34792189 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
34792203 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34792266 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34792282 CCGAAGG
1 CCGAAGG
34792289 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34800356 original size:79 final size:81
Alignment explanation
Indices: 34800220--34800402 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
34800210 TCGAATGATG
* *
34800220 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34800284 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34800299 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
**
34800361 TTTGTGCGATTTACTATA
64 TTTGTGCGAGATACTATA
* *
34800379 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34800403 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:34800418 original size:40 final size:39
Alignment explanation
Indices: 34800221--34800423 Score: 182
Period size: 40 Copynumber: 5.1 Consensus size: 39
34800211 CGAATGATGT
* * *
34800221 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
34800261 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
34800301 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
34800339 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGATTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTACTATAA
* ** *
34800380 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAA
34800420 CCGG
1 CCGG
34800424 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
39 36 0.26
40 90 0.66
41 11 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:34800426 original size:79 final size:79
Alignment explanation
Indices: 34800273--34800437 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
34800263 GGACTAAGAT
* **
34800273 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34800338 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
** * *
34800352 CCGAAGGCATTTGTGCGATTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34800415 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34800431 CCGAAGG
1 CCGAAGG
34800438 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34805461 original size:4 final size:4
Alignment explanation
Indices: 34805452--34805479 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
34805442 AAGTTTTATT
34805452 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
34805480 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:34807845 original size:12 final size:13
Alignment explanation
Indices: 34807828--34807860 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34807818 AATGTGAAAC
34807828 AGAAAGAAATTGA
1 AGAAAGAAATTGA
*
34807841 A-AAAGAAGTTGA
1 AGAAAGAAATTGA
34807853 AGAAAGAA
1 AGAAAGAA
34807861 GAGAAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (13 bp):
AGAAAGAAATTGA
Found at i:34812805 original size:46 final size:48
Alignment explanation
Indices: 34812679--34812808 Score: 155
Period size: 47 Copynumber: 2.8 Consensus size: 48
34812669 TGTAACCCGC
34812679 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
34812729 -C-TCA-CGAACTCGGACTCAACTCAACTAGTTCGGA-C-A-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
*
34812772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
34812809 TGCTCAATCA
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 28 0.40
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:34812827 original size:46 final size:46
Alignment explanation
Indices: 34812682--34812827 Score: 131
Period size: 46 Copynumber: 3.2 Consensus size: 46
34812672 AACCCGCCCA
*
34812682 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * * *** *
34812730 TCA-CGAACTCGGACTCAACTCAACTAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
34812774 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
34812822 T-AGTGA
1 TAAGTGA
34812828 CATGTCACTT
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 35 0.44
47 30 0.38
48 8 0.10
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:34820723 original size:23 final size:22
Alignment explanation
Indices: 34820692--34820797 Score: 99
Period size: 23 Copynumber: 4.6 Consensus size: 22
34820682 TTCAATCGTA
*
34820692 AGAGCTTACTGTTTCAGTTCATT
1 AGAGCTTACTGTTTCAGCTCA-T
* * * *
34820715 GGAGCTTACCGATTCAGCTCGAA
1 AGAGCTTACTGTTTCAGCTC-AT
34820738 AGAGCTTACTG-TTCAGCTCAGT
1 AGAGCTTACTGTTTCAGCTCA-T
34820760 AGAGCTTACCAT-TTTCAGCTCAAT
1 AGAGCTTA-C-TGTTTCAGCTC-AT
34820784 AGAGCTTACTGTTT
1 AGAGCTTACTGTTT
34820798 ATCAACTTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
21 1 0.01
22 17 0.25
23 30 0.44
24 19 0.28
25 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (22 bp):
AGAGCTTACTGTTTCAGCTCAT
Found at i:34820750 original size:46 final size:46
Alignment explanation
Indices: 34820671--34820797 Score: 145
Period size: 45 Copynumber: 2.8 Consensus size: 46
34820661 TAGCTTGTAT
* * * * * *
34820671 GAGCTTACTGATTCA-ATCGTAAGAGCTTACTGTTTCAGTTCATTG
1 GAGCTTACCGATTCAGCTCGAAAGAGCTTACTGTTTCAGCTCAGTA
34820716 GAGCTTACCGATTCAGCTCGAAAGAGCTTACTG-TTCAGCTCAGTA
1 GAGCTTACCGATTCAGCTCGAAAGAGCTTACTGTTTCAGCTCAGTA
34820761 GAGCTTACC-ATTTTCAGCTC-AATAGAGCTTACTGTTT
1 GAGCTTACCGA--TTCAGCTCGAA-AGAGCTTACTGTTT
34820798 ATCAACTTAG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
44 1 0.01
45 34 0.48
46 34 0.48
47 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (46 bp):
GAGCTTACCGATTCAGCTCGAAAGAGCTTACTGTTTCAGCTCAGTA
Found at i:34820753 original size:45 final size:45
Alignment explanation
Indices: 34820671--34820796 Score: 141
Period size: 46 Copynumber: 2.8 Consensus size: 45
34820661 TAGCTTGTAT
* * * * * *
34820671 GAGCTTACTGATTCA-ATCGTAAGAGCTTACTGTTTCAGTTCATTG
1 GAGCTTACCGATTCAGCTCGAAAGAGCTTACTG-TTCAGCTCAGTA
34820716 GAGCTTACCGATTCAGCTCGAAAGAGCTTACTGTTCAGCTCAGTA
1 GAGCTTACCGATTCAGCTCGAAAGAGCTTACTGTTCAGCTCAGTA
34820761 GAGCTTACC-ATTTTCAGCTC-AATAGAGCTTACTGTT
1 GAGCTTACCGA--TTCAGCTCGAA-AGAGCTTACTGTT
34820797 TATCAACTTA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
44 1 0.01
45 34 0.48
46 36 0.51
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (45 bp):
GAGCTTACCGATTCAGCTCGAAAGAGCTTACTGTTCAGCTCAGTA
Found at i:34820755 original size:22 final size:22
Alignment explanation
Indices: 34820671--34820794 Score: 83
Period size: 22 Copynumber: 5.5 Consensus size: 22
34820661 TAGCTTGTAT
* *
34820671 GAGCTTACTGATTCA-ATCGTAA
1 GAGCTTACTGATTCAGCTC-AAA
* * **
34820693 GAGCTTACTGTTTCAGTTCATTG
1 GAGCTTACTGATTCAGCTCA-AA
*
34820716 GAGCTTACCGATTCAGCTCGAAA
1 GAGCTTACTGATTCAGCTC-AAA
*
34820739 GAGCTTACTG-TTCAGCTCAGTA
1 GAGCTTACTGATTCAGCTCA-AA
*
34820761 GAGCTTACCAT-TTTCAGCTCAATA
1 GAGCTTA-C-TGATTCAGCTCAA-A
34820785 GAGCTTACTG
1 GAGCTTACTG
34820795 TTTATCAACT
Statistics
Matches: 80, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
21 1 0.01
22 31 0.39
23 29 0.36
24 19 0.24
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (22 bp):
GAGCTTACTGATTCAGCTCAAA
Found at i:34822463 original size:32 final size:32
Alignment explanation
Indices: 34822417--34822486 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
34822407 TATATAAAAC
* *
34822417 TGTGATAGTGTGATGACTCTTGACATTTCTAA
1 TGTGTTAGTGTGATGACTCTTGACATTTCAAA
34822449 TGTGTTAGTGTGATGACTCTTGACATTTCAAA
1 TGTGTTAGTGTGATGACTCTTGACATTTCAAA
34822481 TGTGTT
1 TGTGTT
34822487 TTTATCTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (32 bp):
TGTGTTAGTGTGATGACTCTTGACATTTCAAA
Found at i:34838195 original size:27 final size:26
Alignment explanation
Indices: 34838160--34838268 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
34838150 AGCATGGCTG
* *
34838160 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
34838186 CCAGATACAGATAATCGTGGCAAAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
34838214 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
34838241 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
34838268 C
1 C
34838269 GAGGACGCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
26 6 0.09
27 49 0.70
28 15 0.21
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:34838425 original size:28 final size:28
Alignment explanation
Indices: 34838380--34838442 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
34838370 TTAACCCTAG
*
34838380 GGGGTATAAAGGTCATTTTGCACACATA
1 GGGGTATAAAGGTAATTTTGCACACATA
* *
34838408 GGGGTATAATGGTAATTTTGCATACATA
1 GGGGTATAAAGGTAATTTTGCACACATA
34838436 GGGGTAT
1 GGGGTAT
34838443 TCTAGTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.32
Consensus pattern (28 bp):
GGGGTATAAAGGTAATTTTGCACACATA
Found at i:34839463 original size:12 final size:13
Alignment explanation
Indices: 34839444--34839476 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34839434 GGGTTCAGCT
34839444 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
34839457 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
34839469 ATGGAGAA
1 ATGGAGAA
34839477 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:34841291 original size:76 final size:75
Alignment explanation
Indices: 34841165--34841307 Score: 268
Period size: 76 Copynumber: 1.9 Consensus size: 75
34841155 ACTTCCAAAG
*
34841165 TGGTATTTTTACTTGCTGCAATAATCCAGAAGGTAACTGATGCTCAGCTTTCACCTGCTGGCATG
1 TGGTATTTTTACTGGCTGCAATAATCCAGAAGGTAACTGATGCTCAGCTTTCA-CTGCTGGCATG
34841230 TCACTTCCATT
65 TCACTTCCATT
34841241 TGGTATTTTTACTGGCTGCAATAATCCAGAAGGTAACTGATGCTCAGCTTTCACTGCTGGCATGT
1 TGGTATTTTTACTGGCTGCAATAATCCAGAAGGTAACTGATGCTCAGCTTTCACTGCTGGCATGT
34841306 CA
66 CA
34841308 GACATTTCCC
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 14 0.21
76 52 0.79
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (75 bp):
TGGTATTTTTACTGGCTGCAATAATCCAGAAGGTAACTGATGCTCAGCTTTCACTGCTGGCATGT
CACTTCCATT
Found at i:34845935 original size:26 final size:26
Alignment explanation
Indices: 34845904--34846013 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
34845894 AGCATGGCTG
* *
34845904 CCAGATACAGAAATGTGACAGAGTCA
1 CCAGATACAGAAATGTGGCAGAGCCA
* *
34845930 CCAGATACAGATATGTGGCAGTGCCA
1 CCAGATACAGAAATGTGGCAGAGCCA
34845956 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGA-A-ATGTGGCAGAGCCA
* *
34845983 CCAGAT-CAGATAATTGTGGTATAGCCA
1 CCAGATACAGA-AA-TGTGGCAGAGCCA
34846010 CCAG
1 CCAG
34846014 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
25 5 0.07
26 28 0.39
27 39 0.54
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGATACAGAAATGTGGCAGAGCCA
Found at i:34846167 original size:28 final size:28
Alignment explanation
Indices: 34846122--34846184 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
34846112 TTAACCCTAG
* *
34846122 GGGGTATAAAGGTCATTTTGCACACATA
1 GGGGTATAAAGGTAATTTTACACACATA
* *
34846150 GGGGTATAATGGTAATTTTACATACATA
1 GGGGTATAAAGGTAATTTTACACACATA
34846178 GGGGTAT
1 GGGGTAT
34846185 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (28 bp):
GGGGTATAAAGGTAATTTTACACACATA
Found at i:34847269 original size:12 final size:13
Alignment explanation
Indices: 34847250--34847282 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34847240 GGGTTCAGCT
34847250 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
34847263 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
34847275 ATGGAGAA
1 ATGGAGAA
34847283 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:34851614 original size:68 final size:65
Alignment explanation
Indices: 34851400--34851652 Score: 221
Period size: 68 Copynumber: 3.8 Consensus size: 65
34851390 CATAATTTTG
* * * *
34851400 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATTCTCG
34851461 TA
64 TA
* * * *
34851463 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCTACATATA-TCTC
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATTCTC
34851527 GTA
63 GTA
* *
34851530 GCTCTCTTATCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
34851595 GTA
63 GTA
* * * * * ** *
34851598 GCTCTCTTGTAC-ACATGATGTGCACTTAGCACAATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATA
34851653 CCATCTGTAT
Statistics
Matches: 156, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 29 0.19
65 2 0.01
66 24 0.15
67 30 0.19
68 51 0.33
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:34858980 original size:38 final size:38
Alignment explanation
Indices: 34858929--34859137 Score: 168
Period size: 38 Copynumber: 5.0 Consensus size: 38
34858919 GAATGAAAAA
34858929 AACGTGGTGCTAAGTGGATATACCACAGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACAGTTATACATGT
*
34858967 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGAATCATGT
1 AACGTGGTGCTAAGTGGATATACCAC-AGT-----TA-T--A-CATGT
* *
34859015 AACGTGGTGCTAAGTGAATATACCACGGTTACATGTATTGATTCAT-T
1 AACGTGGTGCTAAGTGGATATA-C-C----ACA-G--TT-ATACATGT
* *
34859062 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACAGTTATACATGT
* *
34859100 AATGTGGTGCTAAGTGGATATGCCACAGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACAGTTATACATGT
34859138 TAATTTGAAA
Statistics
Matches: 138, Mismatches: 12, Indels: 42
0.72 0.06 0.22
Matches are distributed among these distances:
37 4 0.03
38 63 0.46
39 2 0.01
40 1 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 23 0.17
48 29 0.21
49 1 0.01
50 1 0.01
51 2 0.01
52 1 0.01
53 1 0.01
54 2 0.01
56 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACAGTTATACATGT
Found at i:34859083 original size:47 final size:48
Alignment explanation
Indices: 34858962--34859097 Score: 211
Period size: 48 Copynumber: 2.9 Consensus size: 48
34858952 CACAGTTATA
*
34858962 CATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGAAT
1 CATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGAAT
* ** *
34859010 CATGTAACGTGGTGCTAAGTGAATATACCACGGTTACATGTATTGATT
1 CATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGAAT
*
34859058 CAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 CATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
34859098 GTAATGTGGT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 33 0.42
48 46 0.58
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (48 bp):
CATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGAAT
Found at i:34861083 original size:44 final size:44
Alignment explanation
Indices: 34861033--34861119 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
34861023 AGGCCTTGAG
* *
34861033 CCCAAACATTATTTGAAAATTGGATTGCTTAAAAATAAACAAAA
1 CCCAAACATTATTTAAAAATTGGACTGCTTAAAAATAAACAAAA
* *
34861077 CCCAAACTTTATTTAAAAATTGGACTGTTTAAAAATAAACAAA
1 CCCAAACATTATTTAAAAATTGGACTGCTTAAAAATAAACAAA
34861120 CTTATTAGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.29
Consensus pattern (44 bp):
CCCAAACATTATTTAAAAATTGGACTGCTTAAAAATAAACAAAA
Found at i:34861192 original size:7 final size:7
Alignment explanation
Indices: 34861174--34861207 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
34861164 TAAAACTAAC
34861174 ATTAAA-
1 ATTAAAG
34861180 ATTAAAG
1 ATTAAAG
34861187 ATTAAAG
1 ATTAAAG
34861194 ATTAAA-
1 ATTAAAG
34861200 ATTAAAG
1 ATTAAAG
34861207 A
1 A
34861208 CAAAGATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (7 bp):
ATTAAAG
Found at i:34861192 original size:13 final size:14
Alignment explanation
Indices: 34861174--34861207 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
34861164 TAAAACTAAC
34861174 ATTAAA-ATTAAAG
1 ATTAAAGATTAAAG
34861187 ATTAAAGATTAAA-
1 ATTAAAGATTAAAG
34861200 ATTAAAGA
1 ATTAAAGA
34861208 CAAAGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (14 bp):
ATTAAAGATTAAAG
Found at i:34861199 original size:20 final size:19
Alignment explanation
Indices: 34861174--34861220 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
34861164 TAAAACTAAC
*
34861174 ATTAAAATTAAAGATTAAAG
1 ATTAAAATTAAAGA-CAAAG
34861194 ATTAAAATTAAAGACAAAG
1 ATTAAAATTAAAGACAAAG
*
34861213 ATAAAAAT
1 ATTAAAAT
34861221 GAGAAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.26
Consensus pattern (19 bp):
ATTAAAATTAAAGACAAAG
Found at i:34863274 original size:20 final size:20
Alignment explanation
Indices: 34863232--34863276 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34863222 AGCACATGTA
* **
34863232 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACGT
*
34863252 TTCATCAAATTTTACAACGT
1 TTCATAAAATTTTACAACGT
34863272 TTCAT
1 TTCAT
34863277 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAACGT
Found at i:34866912 original size:27 final size:27
Alignment explanation
Indices: 34866872--34866983 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
34866862 AGGAAGCGTC
*
34866872 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
34866899 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
34866926 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* ** *
34866954 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
34866980 CTGG
1 CTGG
34866984 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.65
28 17 0.24
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:34866978 original size:54 final size:54
Alignment explanation
Indices: 34866872--34866983 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
34866862 AGGAAGCGTC
* * *
34866872 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * * *
34866926 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTACCACATATATCTGTT
34866980 CTGG
1 CTGG
34866984 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:34875131 original size:26 final size:26
Alignment explanation
Indices: 34875102--34875170 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
34875092 TATCCGGAGC
**
34875102 TCCTGATTAAAGGCTCTTTGTGAGTT
1 TCCTGATTAAAGGCTCTTTGTGAACT
* *
34875128 TCCTGATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAAAGGCTCTTTGTGAACT
*
34875154 TCCTGATT-AGGGCTCTT
1 TCCTGATTAAAGGCTCTT
34875171 ATGAGCTTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 6 0.17
26 30 0.83
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTTGTGAACT
Found at i:34881326 original size:32 final size:33
Alignment explanation
Indices: 34881290--34881355 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
34881280 TATCATGCCT
34881290 TCTAGTGAAAAAA-GTTTATTCCTTAAAGAGAA
1 TCTAGTGAAAAAATGTTTATTCCTTAAAGAGAA
34881322 TCTAGTGAAAAAATGTTTATTCCTTAAAGAGAA
1 TCTAGTGAAAAAATGTTTATTCCTTAAAGAGAA
34881355 T
1 T
34881356 GTAACAATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.33
Consensus pattern (33 bp):
TCTAGTGAAAAAATGTTTATTCCTTAAAGAGAA
Found at i:34883732 original size:15 final size:15
Alignment explanation
Indices: 34883712--34883740 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34883702 ATGCTTCACA
34883712 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
34883727 CACCGTGTTATCAA
1 CACCGTGTTATCAA
34883741 GCAACAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:34888008 original size:39 final size:38
Alignment explanation
Indices: 34887888--34888021 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 38
34887878 GACTTCGAGT
*
34887888 CGATGAGACACTAGGTGTCAATTTATTACTTCGAAATTATT
1 CGATGAGACACTAGGTGTCAA-TTA-TACTTCG-AATTATC
* * * * *
34887929 CGATAAGGCACT-GGATGCCAATT-TACTTCTG-TTTAAC
1 CGATGAGACACTAGG-TGTCAATTATACTTC-GAATTATC
34887966 CGATGAGACACTAGGTGTCAATTACTACTTCGAATTATC
1 CGATGAGACACTAGGTGTCAATTA-TACTTCGAATTATC
* *
34888005 CGATGAGGCACTGGGTG
1 CGATGAGACACTAGGTG
34888022 CAAAACTGGT
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
37 20 0.27
38 9 0.12
39 26 0.35
40 4 0.05
41 15 0.20
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (38 bp):
CGATGAGACACTAGGTGTCAATTATACTTCGAATTATC
Found at i:34892575 original size:43 final size:43
Alignment explanation
Indices: 34892514--34892659 Score: 206
Period size: 43 Copynumber: 3.4 Consensus size: 43
34892504 ACATATCATT
*
34892514 TCACCAGCATTACGCCTGCTAGGCACAAAGGCCCGAATACACA
1 TCACCAGCACTACGCCTGCTAGGCACAAAGGCCCGAATACACA
* * *
34892557 TCACCGGCACTACGCCTGCTAGGCACGAAGACCCGAATACACA
1 TCACCAGCACTACGCCTGCTAGGCACAAAGGCCCGAATACACA
* * *
34892600 TCACCGGCACTAAGCCTGCTAGGCACAAAGGCCCGAATATA-A
1 TCACCAGCACTACGCCTGCTAGGCACAAAGGCCCGAATACACA
*
34892642 T-ACCAGCACTAGGCCTGC
1 TCACCAGCACTACGCCTGC
34892660 GGGATTTATC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
41 15 0.16
42 2 0.02
43 76 0.82
ACGTcount: A:0.31, C:0.35, G:0.21, T:0.14
Consensus pattern (43 bp):
TCACCAGCACTACGCCTGCTAGGCACAAAGGCCCGAATACACA
Found at i:34892685 original size:38 final size:38
Alignment explanation
Indices: 34892631--34892714 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
34892621 GGCACAAAGG
* * *
34892631 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
34892669 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
34892707 CCCGAATA
1 CCCGAATA
34892715 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:34894700 original size:40 final size:40
Alignment explanation
Indices: 34894614--34894831 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
34894604 AAGCCAAGTA
* * *
34894614 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
34894652 CTTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34894692 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34894732 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34894772 CCTTCGGGAGTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34894813 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34894832 TTATCATCCA
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 11 0.07
39 16 0.10
40 103 0.66
41 23 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34906302 original size:131 final size:132
Alignment explanation
Indices: 34906064--34906328 Score: 460
Period size: 131 Copynumber: 2.0 Consensus size: 132
34906054 TCCTACCCAG
34906064 TCGACATAAATCAAAAGTATATCCAAGAATGCAAACACTATATATATATATATTAAAGAATGATA
1 TCGACATAAATCAAAAGTATATCCAAGAATGCAAACAC---ATATATATATATTAAAGAATGATA
*
34906129 TAGGAAATTCTGGCAACAACATACCCCTATTAATAACATGTTGTCACTCAACATCCTTATGATAT
63 TAGGAAATTATGGCAACAACATACCCCTATTAATAACATGTTGTCACTCAACATCCTTATGATAT
34906194 CAGCA
128 CAGCA
*
34906199 TCGACATAAATCAAAAGTATATCCAGGAATGCAAACAC-TATATATATATTAAAGAATGATATAG
1 TCGACATAAATCAAAAGTATATCCAAGAATGCAAACACATATATATATATTAAAGAATGATATAG
* *
34906263 GAAATTATGGCAACTACATACCCCTATTTATAACATGTTGTCACTCAACATCCTTATGATATCAG
66 GAAATTATGGCAACAACATACCCCTATTAATAACATGTTGTCACTCAACATCCTTATGATATCAG
34906328 C
131 C
34906329 CCATGTAGTT
Statistics
Matches: 126, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
131 89 0.71
135 37 0.29
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (132 bp):
TCGACATAAATCAAAAGTATATCCAAGAATGCAAACACATATATATATATTAAAGAATGATATAG
GAAATTATGGCAACAACATACCCCTATTAATAACATGTTGTCACTCAACATCCTTATGATATCAG
CA
Found at i:34909614 original size:42 final size:42
Alignment explanation
Indices: 34909560--34909679 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
34909550 CATACAATAC
* *
34909560 CATACCAATGCCATATCCTAGATATGGTCTTACATG-GGATCT
1 CATATCAATGCCATATCCTAGATATGGTCTTACACGAGG-TCT
* * *
34909602 CATATCGATGCCAATAGCC-AGCTATGGTCTTACACGAGGTCT
1 CATATCAATGCC-ATATCCTAGATATGGTCTTACACGAGGTCT
* *
34909644 CATATCAATACCACATCCTAGATATGGTCTTACACG
1 CATATCAATGCCATATCCTAGATATGGTCTTACACG
34909680 CAATATTAGT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 54 0.83
43 7 0.11
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
CATATCAATGCCATATCCTAGATATGGTCTTACACGAGGTCT
Found at i:34910899 original size:25 final size:25
Alignment explanation
Indices: 34910871--34910943 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 25
34910861 CCCATAAAAT
34910871 ATCATGATGGTCACAATAATAATCA
1 ATCATGATGGTCACAATAATAATCA
* *
34910896 ATCA--A-AGT-ACCCATAA-AAT--
1 ATCATGATGGTCA-CAATAATAATCA
34910915 ATCATGATGGTCACAATAATAATCA
1 ATCATGATGGTCACAATAATAATCA
34910940 ATCA
1 ATCA
34910944 AAGTATAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
19 4 0.11
21 5 0.14
22 14 0.39
23 5 0.14
25 8 0.22
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.26
Consensus pattern (25 bp):
ATCATGATGGTCACAATAATAATCA
Found at i:34910923 original size:44 final size:44
Alignment explanation
Indices: 34910860--34910948 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
34910850 AGAAAACTAA
34910860 ACCCATAAAATATCATGATGGTCACAATAATAATCAATCAAAGT
1 ACCCATAAAATATCATGATGGTCACAATAATAATCAATCAAAGT
34910904 ACCCATAAAATATCATGATGGTCACAATAATAATCAATCAAAGT
1 ACCCATAAAATATCATGATGGTCACAATAATAATCAATCAAAGT
34910948 A
1 A
34910949 TAACAACATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.25
Consensus pattern (44 bp):
ACCCATAAAATATCATGATGGTCACAATAATAATCAATCAAAGT
Found at i:34914075 original size:15 final size:15
Alignment explanation
Indices: 34914052--34914083 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
34914042 ACTTAATATG
34914052 TATAAGTTATAATAA
1 TATAAGTTATAATAA
*
34914067 TATATGTTATAATAA
1 TATAAGTTATAATAA
34914082 TA
1 TA
34914084 AGAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (15 bp):
TATAAGTTATAATAA
Found at i:34914124 original size:26 final size:26
Alignment explanation
Indices: 34914074--34914126 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34914064 TAATATATGT
*
34914074 TATAATAATAAGAAATAAAATGAAAA
1 TATAATAATAAGAAATAAAAAGAAAA
34914100 TATAATAA-AAGAAATAATAAAGAAAA
1 TATAATAATAAGAAATAA-AAAGAAAA
34914126 T
1 T
34914127 GGAAAGAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.23
Consensus pattern (26 bp):
TATAATAATAAGAAATAAAAAGAAAA
Found at i:34914174 original size:19 final size:18
Alignment explanation
Indices: 34914150--34914195 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 18
34914140 CATGCAAATT
34914150 AGAAAAGAAAGAAAAGAAA
1 AGAAAAGAAAG-AAAGAAA
34914169 AGAAAAGAAAGAAAGAAA
1 AGAAAAGAAAGAAAGAAA
34914187 AGAAGAAGA
1 AGAA-AAGA
34914196 GAATTCACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AGAAAAGAAAGAAAGAAA
Found at i:34914190 original size:9 final size:9
Alignment explanation
Indices: 34914150--34914186 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
34914140 CATGCAAATT
34914150 AGAAAAGAA
1 AGAAAAGAA
34914159 AGAAAAGAAA
1 AGAAAAG-AA
34914169 AGAAAAGAA
1 AGAAAAGAA
34914178 AG-AAAGAA
1 AGAAAAGAA
34914186 A
1 A
34914187 AGAAGAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 7 0.26
9 11 0.41
10 9 0.33
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (9 bp):
AGAAAAGAA
Found at i:34914198 original size:5 final size:5
Alignment explanation
Indices: 34914150--34914195 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
34914140 CATGCAAATT
34914150 AGAAA AG-AA AGAAA AGAAA AGAAA AG-AA AG-AA AGAAA AGAAGA AGA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAA-A AGA
34914196 GAATTCACGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.32
5 22 0.58
6 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:34914198 original size:13 final size:13
Alignment explanation
Indices: 34914153--34914190 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
34914143 GCAAATTAGA
34914153 AAAGAAAGAAAAG
1 AAAGAAAGAAAAG
34914166 --A-AAAGAAAAG
1 AAAGAAAGAAAAG
34914176 AAAGAAAGAAAAG
1 AAAGAAAGAAAAG
34914189 AA
1 AA
34914191 GAAGAGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.41
11 1 0.05
12 1 0.05
13 11 0.50
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAG
Found at i:34918287 original size:32 final size:32
Alignment explanation
Indices: 34918251--34918314 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
34918241 GAAAATTTGC
*
34918251 ATGATTAAGTTCTATATGGACAATTCCATAAT
1 ATGATTAAGTTCCATATGGACAATTCCATAAT
*
34918283 ATGATTAAGTTCCATATGGATAATTCCATAAT
1 ATGATTAAGTTCCATATGGACAATTCCATAAT
34918315 TTTACTCTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (32 bp):
ATGATTAAGTTCCATATGGACAATTCCATAAT
Found at i:34925110 original size:47 final size:47
Alignment explanation
Indices: 34925034--34925401 Score: 211
Period size: 47 Copynumber: 7.8 Consensus size: 47
34925024 GATATAATGC
*
34925034 TGATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* *
34925081 TGATGCTATGTCCCAGACATGATCTTACACTGGCTCATCCATCAAGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * * * * *
34925128 TGATGCCCTGTCCCAAACATGGTCTTAGACTGACT-ATCGAAATCGAGGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATC-AAGT
* * * *
34925177 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATCTGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCA--AGT
* * * * * * ** *
34925225 GCCGATGCCATGCCCCAAACATGGTCTTACACTGACACAT-CTTGTAGC
1 --TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * * *
34925273 CGATG-CATGTGCCAAACAT-GTCTTACACTAGCTTACAT-C-TCGAGGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATC-AAGT
* * * *
34925319 CGATG-CATCTCCCAGACAT-TTCTTACACTAGCACTCATCC--CAATGT
1 TGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATCCATCAA-GT
* * *
34925365 CGATGCCATGTCCCAGACGTGGTCTTACACTAGCTCA
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
34925402 CAATAACCTA
Statistics
Matches: 249, Mismatches: 53, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
44 11 0.04
45 14 0.06
46 54 0.22
47 87 0.35
48 18 0.07
49 34 0.14
50 30 0.12
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:34925247 original size:50 final size:49
Alignment explanation
Indices: 34925129--34925305 Score: 149
Period size: 50 Copynumber: 3.7 Consensus size: 49
34925119 CCATCAAGTT
* * *
34925129 GATGCCCTGTCCCAAACATGGTCTTAGACT-GACTATCGA-A-ATCG-AGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTA-C-ACATATTGTA-GCC
* * *
34925178 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGT-GCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCT-ACACATAT-TGTAGCC
* *
34925228 GATGCCATGCCCCAAACATGGTCTTACACT-G--ACACATCTTGTAGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTACACATATTGTAGCC
*
34925274 GATG-CATGTGCCAAACAT-GTCTTACACTAGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCT
34925306 TACATCTCGA
Statistics
Matches: 105, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
44 10 0.10
45 16 0.15
46 13 0.12
48 1 0.01
49 31 0.30
50 33 0.31
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (49 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTACACATATTGTAGCC
Found at i:34925311 original size:46 final size:47
Alignment explanation
Indices: 34925183--34925350 Score: 152
Period size: 46 Copynumber: 3.6 Consensus size: 47
34925173 AGGCCGACGC
* *
34925183 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGT-GCCGATG
1 CATGTCCCAAACATGGTCTTACACTAGCT-T-ACATCT-TGTAGCCGATG
*
34925232 CCATGCCCCAAACATGGTCTTACACT-GAC--ACATCTTGTAGCCGATG
1 -CATGTCCCAAACATGGTCTTACACTAG-CTTACATCTTGTAGCCGATG
* * *
34925278 CATGTGCCAAACAT-GTCTTACACTAGCTTACATCTCG-AGGTCGATG
1 CATGTCCCAAACATGGTCTTACACTAGCTTACATCTTGTA-GCCGATG
* * *
34925324 CATCTCCCAGACAT-TTCTTACACTAGC
1 CATGTCCCAAACATGGTCTTACACTAGC
34925351 ACTCATCCCA
Statistics
Matches: 101, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.11
45 17 0.17
46 48 0.48
49 1 0.01
50 24 0.24
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
CATGTCCCAAACATGGTCTTACACTAGCTTACATCTTGTAGCCGATG
Found at i:34925367 original size:46 final size:46
Alignment explanation
Indices: 34925273--34925398 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 46
34925263 ATCTTGTAGC
* * * * *
34925273 CGATGCATGTGCCAAACATGTCTTACACTAGCTTACATCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCTACATCCCAAGGT
* * *
34925319 CGATGCATCTCCCAGACATTTCTTACACTAGCACT-CATCCCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-CTACATCCCAAGGT
*
34925365 CGATGCCATGTCCCAGACGTGGTCTTACACTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC
34925399 TCACAATAAC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 41 0.62
47 13 0.20
48 12 0.18
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCTACATCCCAAGGT
Found at i:34933389 original size:34 final size:33
Alignment explanation
Indices: 34933333--34933499 Score: 138
Period size: 34 Copynumber: 4.9 Consensus size: 33
34933323 AAGCAAATTT
* * *
34933333 ATTGCTACCGTAATGATCTGTTATAAACATGTTA
1 ATTGCTACTGT-ATGATTTGTTATAAGCATGTTA
* *
34933367 ATTGCTACTGTATCGATTTGTTATAAGCAAGTTT
1 ATTGCTACTGTAT-GATTTGTTATAAGCATGTTA
* * * *
34933401 ATTGCTACTGTAATGATCTATTATAATCATGATA
1 ATTGCTACTGT-ATGATTTGTTATAAGCATGTTA
** * * *
34933435 ATTTTTATTGTATCAACTTGTTATAAGCATGTT-
1 ATTGCTACTGTAT-GATTTGTTATAAGCATGTTA
* *
34933468 ACTGCTACCGTATTGATTTGTTATAAGCATGT
1 ATTGCTACTGTA-TGATTTGTTATAAGCATGT
34933500 CATGTTGCAT
Statistics
Matches: 102, Mismatches: 27, Indels: 9
0.74 0.20 0.07
Matches are distributed among these distances:
33 27 0.26
34 73 0.72
35 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (33 bp):
ATTGCTACTGTATGATTTGTTATAAGCATGTTA
Found at i:34933437 original size:68 final size:68
Alignment explanation
Indices: 34933321--34933498 Score: 214
Period size: 68 Copynumber: 2.6 Consensus size: 68
34933311 CAAATGCATG
* * * *
34933321 ATAAGCAAATTTATTGCTACCGTAATGATCTGTTATAAACATGTTAATTGCTACTGTATCGATTT
1 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAACATGATAATTGCTACTGTATCAACTT
34933386 GTT
66 GTT
* * * ** *
34933389 ATAAGCAAGTTTATTGCTACTGTAATGATCTATTATAATCATGATAATTTTTATTGTATCAACTT
1 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAACATGATAATTGCTACTGTATCAACTT
34933454 GTT
66 GTT
* * * * *
34933457 ATAAGCATG-TTACTGCTACCGTATTGATTTGTTATAAGCATG
1 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAACATG
34933499 TCATGTTGCA
Statistics
Matches: 93, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
67 27 0.29
68 66 0.71
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (68 bp):
ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAACATGATAATTGCTACTGTATCAACTT
GTT
Found at i:34938182 original size:13 final size:13
Alignment explanation
Indices: 34938164--34938196 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
34938154 ATAAATTGAA
34938164 CCACACGGCCAAG
1 CCACACGGCCAAG
34938177 CCACACGGCCAAG
1 CCACACGGCCAAG
34938190 CCACACG
1 CCACACG
34938197 CCCACATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.30, C:0.48, G:0.21, T:0.00
Consensus pattern (13 bp):
CCACACGGCCAAG
Found at i:34942580 original size:21 final size:20
Alignment explanation
Indices: 34942546--34942584 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
34942536 ACTTGAAACA
*
34942546 GGGCACACGTCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
34942566 GGGCAGCACGCCCGTGTGG
1 GGGCA-CACGCCCGTGTGG
34942585 TCATTATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.13, C:0.28, G:0.44, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:34943984 original size:46 final size:45
Alignment explanation
Indices: 34943922--34944092 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
34943912 TCGCGAGGTC
* *
34943922 GATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATACT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTC-ATGCT
* *
34943968 GATGCATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT---TATCTC-ATGCT
* ** * *
34944016 AATGCATGTCTTAGACATGTCTTACACTAGCTCTCATACT-GTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTTAT-CTCAT-GCT
*
34944062 GATGCATGTCCCAGAAATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
34944093 ACACATATCA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.61
47 2 0.02
48 36 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCATGCT
Found at i:34944064 original size:94 final size:93
Alignment explanation
Indices: 34943870--34944092 Score: 252
Period size: 94 Copynumber: 2.4 Consensus size: 93
34943860 CACACCACAA
* * * ** *
34943870 GCTGATGCCATGTCCTAGACAGGACTTACACTAGCTTGTATATCGCGAGGTCGATGCATGTCCCA
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGTCAATGCATGTCCCA
**
34943935 GACATGTCTTACACTAGCTCTTGTCTCAAT
65 GACATGTCTTACACTAGCTCTCATCT-AAT
* * * **
34943965 ACTGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGG-CTAATGCATGTCTTA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGTC-AATGCATGTCCCA
*
34944029 GACATGTCTTACACTAGCTCTCATACT-GT
65 GACATGTCTTACACTAGCTCTCAT-CTAAT
*
34944058 GGCTGATGCATGTCCCAGAAATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGC
34944093 ACACATATCA
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
93 2 0.02
94 98 0.91
95 8 0.07
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGTCAATGCATGTCCCAG
ACATGTCTTACACTAGCTCTCATCTAAT
Found at i:34953689 original size:22 final size:22
Alignment explanation
Indices: 34953664--34953712 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
34953654 ACGGGTTTAG
*
34953664 CACTTTTGTGCTCTGTG-TTCAA
1 CACTTTTGTGCTCTCTGCTT-AA
34953686 CACTTTTGTGCTCTCTGCTTAA
1 CACTTTTGTGCTCTCTGCTTAA
34953708 CACTT
1 CACTT
34953713 CAATGCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.14, C:0.27, G:0.14, T:0.45
Consensus pattern (22 bp):
CACTTTTGTGCTCTCTGCTTAA
Found at i:34961015 original size:13 final size:13
Alignment explanation
Indices: 34960999--34961023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34960989 AATTATAAAA
34960999 TATATTTTTAATT
1 TATATTTTTAATT
34961012 TATATTTTTAAT
1 TATATTTTTAAT
34961024 AATAAATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTTTTAATT
Found at i:34961429 original size:5 final size:5
Alignment explanation
Indices: 34961419--34961455 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
34961409 TTAACTATAT
*
34961419 TTTTA TTTTA TTTTA TTTTA TTTTA TTATGA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA T
34961456 ATTTTAGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:34965694 original size:69 final size:68
Alignment explanation
Indices: 34965605--34965861 Score: 288
Period size: 69 Copynumber: 3.8 Consensus size: 68
34965595 CCCCGTGACA
* * *
34965605 TAAGATCATAGCTC-AGCTATGACAACCAATAAAGTCCGTTGGGATAATAAACACGAGGATTAAA
1 TAAGACCATAGCTCGA-CTATGACAACCAATAAAGTCCGTCGGGACAATAAACACGAGGATTAAA
34965669 AGGTG
65 A-GTG
* * ** *
34965674 TAAGACCATAGCTCGACTATGGCAACCAATAAAGTCCG-CGGGGACAATAAGCATAAAGATTATA
1 TAAGACCATAGCTCGACTATGACAACCAATAAAGTCCGTC-GGGACAATAAACACGAGGATTA-A
*
34965738 ATGTG
64 AAGTG
* * ** *
34965743 TAAGACCATAGCTCGACTATGACAACTAATAGAA-TCCATCAAGACAATAATCACGAGGATTATA
1 TAAGACCATAGCTCGACTATGACAACCAATA-AAGTCCGTCGGGACAATAAACACGAGGATTA-A
*
34965807 AAATG
64 AAGTG
*
34965812 TAAGACCATAGCTCGACTATGACAACTAAT-AAGTCCGTCGGGACAATAAA
1 TAAGACCATAGCTCGACTATGACAACCAATAAAGTCCGTCGGGACAATAAA
34965862 TACGGAAAAG
Statistics
Matches: 158, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
67 2 0.01
68 13 0.08
69 137 0.87
70 6 0.04
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (68 bp):
TAAGACCATAGCTCGACTATGACAACCAATAAAGTCCGTCGGGACAATAAACACGAGGATTAAAA
GTG
Found at i:34973928 original size:13 final size:13
Alignment explanation
Indices: 34973910--34973945 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
34973900 TTGAACCGTG
*
34973910 TCTTTTCTTCTTT
1 TCTTTTTTTCTTT
34973923 TCTTTTTTTCTTT
1 TCTTTTTTTCTTT
34973936 T-TTTTTTTCT
1 TCTTTTTTTCT
34973946 GTGTTTTCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TCTTTTTTTCTTT
Found at i:34973952 original size:21 final size:21
Alignment explanation
Indices: 34973910--34973953 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34973900 TTGAACCGTG
*
34973910 TCTTTTCTTCTTTTCTTTTTT
1 TCTTTTCTTCTTTTCTTGTTT
*
34973931 TCTTTT-TTTTTTTCTGTGTTT
1 TCTTTTCTTCTTTTCT-TGTTT
34973952 TC
1 TC
34973954 GTAAGATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.80
Consensus pattern (21 bp):
TCTTTTCTTCTTTTCTTGTTT
Found at i:34974593 original size:20 final size:21
Alignment explanation
Indices: 34974568--34974614 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
34974558 CTCAAATTTT
*
34974568 ATTTTAATATTTT-TT-TTTAC
1 ATTTTAAT-TTTTATTATGTAC
34974588 ATTTTAATTTTTATTATGTAC
1 ATTTTAATTTTTATTATGTAC
34974609 ATTTTA
1 ATTTTA
34974615 TTAGTTCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 10 0.42
21 10 0.42
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTTAATTTTTATTATGTAC
Found at i:34991477 original size:13 final size:13
Alignment explanation
Indices: 34991452--34991492 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
34991442 ATCGACTCAA
34991452 ATAAATA-AATAT
1 ATAAATATAATAT
34991464 ATAAATATAATAT
1 ATAAATATAATAT
*
34991477 ATCACA-ATAATAT
1 AT-AAATATAATAT
34991490 ATA
1 ATA
34991493 CAAAAGCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 8 0.31
13 16 0.62
14 2 0.08
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (13 bp):
ATAAATATAATAT
Found at i:34991595 original size:11 final size:11
Alignment explanation
Indices: 34991579--34991603 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34991569 TTCTTCTATA
34991579 CACAATAATAT
1 CACAATAATAT
34991590 CACAATAATAT
1 CACAATAATAT
34991601 CAC
1 CAC
34991604 TTAAACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (11 bp):
CACAATAATAT
Found at i:34992006 original size:25 final size:25
Alignment explanation
Indices: 34991891--34992008 Score: 64
Period size: 25 Copynumber: 4.8 Consensus size: 25
34991881 CTCTTCTCCC
*
34991891 AAAAAT-ATATTATTACTATAAAAAT
1 AAAAATAATA-TATTATTATAAAAAT
* * * **
34991916 AAAATTAATATTTTATTATACATACC
1 AAAAATAATATATTATTATA-AAAAT
* * * * **
34991942 AAAAATATTAAATTGTTTTATTAA-
1 AAAAATAATATATTATTATAAAAAT
* *
34991966 AAAAA-CAT-TATCATTATAAAAAT
1 AAAAATAATATATTATTATAAAAAT
34991989 AAAAATAATATATTATTATA
1 AAAAATAATATATTATTATA
34992009 CATACCAAAA
Statistics
Matches: 64, Mismatches: 24, Indels: 10
0.65 0.24 0.10
Matches are distributed among these distances:
22 8 0.12
23 6 0.09
24 7 0.11
25 24 0.38
26 19 0.30
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (25 bp):
AAAAATAATATATTATTATAAAAAT
Found at i:34996925 original size:55 final size:56
Alignment explanation
Indices: 34996826--34996934 Score: 141
Period size: 56 Copynumber: 2.0 Consensus size: 56
34996816 AAATTTAATT
* * * *
34996826 TTTTCAATAATTTAAAGCTCTATTTTTTTAGATTAGATT-TTTTTTTATAAATTTTA
1 TTTTCAACAATTTAAAGCTCTATCTTTTTAGATAAGATTATTTTTGT-TAAATTTTA
* *
34996882 TTTTCAACAATTTAATGCTTTA-CTTTTTAGATAAGATTATTTTTGTTAAATTT
1 TTTTCAACAATTTAAAGCTCTATCTTTTTAGATAAGATTATTTTTGTTAAATTT
34996935 AGATTCATTG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 21 0.46
56 25 0.54
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (56 bp):
TTTTCAACAATTTAAAGCTCTATCTTTTTAGATAAGATTATTTTTGTTAAATTTTA
Found at i:34999426 original size:24 final size:24
Alignment explanation
Indices: 34999398--34999445 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
34999388 TTAAAAAAAA
*
34999398 GATAATTTGCAAATATACTGATAT
1 GATAATTTGCAAATATACTAATAT
34999422 GATAATTTGCAAATATACTAATAT
1 GATAATTTGCAAATATACTAATAT
34999446 AGCTATGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (24 bp):
GATAATTTGCAAATATACTAATAT
Found at i:35000133 original size:21 final size:19
Alignment explanation
Indices: 35000109--35000148 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
35000099 AACCAATTTG
35000109 AAACACGATCAAACACAATCA
1 AAACACG-TCAAA-ACAATCA
*
35000130 AAACATGTCAAAACAATCA
1 AAACACGTCAAAACAATCA
35000149 TCCTAGGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 5 0.28
21 6 0.33
ACGTcount: A:0.57, C:0.25, G:0.05, T:0.12
Consensus pattern (19 bp):
AAACACGTCAAAACAATCA
Found at i:35000957 original size:41 final size:39
Alignment explanation
Indices: 35000842--35000967 Score: 123
Period size: 37 Copynumber: 3.2 Consensus size: 39
35000832 TGGCACCCAA
*
35000842 TGCCTCATCAGAT-AATTCGAAGAAATAAATTGACACCCAG
1 TGCCTCATCAGATAAATTCGAAG--ATAAATTGACACCTAG
* * * * *
35000882 TGTCTCATCGGTTAAA-CCGAA-ATAAATTGGCACCTAG
1 TGCCTCATCAGATAAATTCGAAGATAAATTGACACCTAG
*
35000919 TGCCTCATCAAATAAATTCGAAGTAGTAAATTGACACCTAG
1 TGCCTCATCAGATAAATTCGAAG-A-TAAATTGACACCTAG
*
35000960 TGTCTCAT
1 TGCCTCAT
35000968 TGACTCAAAG
Statistics
Matches: 68, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
37 26 0.38
38 4 0.06
40 15 0.22
41 23 0.34
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (39 bp):
TGCCTCATCAGATAAATTCGAAGATAAATTGACACCTAG
Found at i:35006736 original size:14 final size:14
Alignment explanation
Indices: 35006717--35006744 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35006707 ACAACATGTA
35006717 AATCAATACAATCT
1 AATCAATACAATCT
35006731 AATCAATACAATCT
1 AATCAATACAATCT
35006745 CATGTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
AATCAATACAATCT
Found at i:35013713 original size:21 final size:21
Alignment explanation
Indices: 35013689--35013728 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
35013679 ACCTTTTCTA
35013689 AAGTTAAAA-GTCAAAACTATT
1 AAGTTAAAAGGT-AAAACTATT
35013710 AAGTTAAAAGGTAAAACTA
1 AAGTTAAAAGGTAAAACTA
35013729 CGTTGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.25
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACTATT
Found at i:35015567 original size:39 final size:39
Alignment explanation
Indices: 35015508--35015657 Score: 165
Period size: 39 Copynumber: 3.7 Consensus size: 39
35015498 ATCGTGATCT
* * * * *
35015508 GAAGCCTGAAGTCTAGCTGAAGCACATAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
35015547 GAAGCCTGAAGGCTAACTGAAGCACACAAATGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
35015586 GAAGCCCGAAGGCTAACTGTTAACTGAAGCACACAAGTGCTAAACA
1 GAAGCCCGAAGG----C---TAACTGAAGCACACAAGTGCTAAACG
35015632 GAAGCCCGAAGGCTAACTGAAGCACA
1 GAAGCCCGAAGGCTAACTGAAGCACA
35015658 TCAGAGCTGA
Statistics
Matches: 96, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
39 58 0.60
42 1 0.01
43 1 0.01
46 36 0.38
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:35015612 original size:46 final size:46
Alignment explanation
Indices: 35015560--35015650 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
35015550 GCCTGAAGGC
*
35015560 TAACTGAAGCACACAAATGCTAAACGGAAGCCCGAAGGCTAACTGT
1 TAACTGAAGCACACAAATGCTAAACAGAAGCCCGAAGGCTAACTGT
*
35015606 TAACTGAAGCACACAAGTGCTAAACAGAAGCCCGAAGGCTAACTG
1 TAACTGAAGCACACAAATGCTAAACAGAAGCCCGAAGGCTAACTG
35015651 AAGCACATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.40, C:0.24, G:0.22, T:0.14
Consensus pattern (46 bp):
TAACTGAAGCACACAAATGCTAAACAGAAGCCCGAAGGCTAACTGT
Found at i:35029549 original size:38 final size:37
Alignment explanation
Indices: 35029465--35029551 Score: 104
Period size: 37 Copynumber: 2.3 Consensus size: 37
35029455 TACAATTCTT
*
35029465 GTGTGTAAGGTGGATGGACCAACCATGGTCCTTTGTG
1 GTGTGTAAGGTGGATGGACCAACCATAGTCCTTTGTG
* * * *
35029502 GTATGTAAGGTGGATGGGCCTACCGTAG-CCTTAATGTG
1 GTGTGTAAGGTGGATGGACCAACCATAGTCCTT--TGTG
35029540 GTGTGTAAGGTG
1 GTGTGTAAGGTG
35029552 AATGAAGTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
36 4 0.10
37 23 0.55
38 15 0.36
ACGTcount: A:0.20, C:0.14, G:0.37, T:0.30
Consensus pattern (37 bp):
GTGTGTAAGGTGGATGGACCAACCATAGTCCTTTGTG
Found at i:35032070 original size:82 final size:82
Alignment explanation
Indices: 35031968--35032141 Score: 213
Period size: 82 Copynumber: 2.1 Consensus size: 82
35031958 TTATCATATT
* * * * * * * * * *
35031968 AGGGAAGTTTTCCATTGACTATCTTGTGGGACATTCGTTGGGACTATTTATACTAGAGGTCTGTC
1 AGGGAAGTCTGCCATGGACTATCTCGTGGGACATCCATAGGGACTATCTATACTAGAAGTCTATC
35032033 AGGTATTATCAAAGTAA
66 AGGTATTATCAAAGTAA
* * *
35032050 AGGGAAGTCTGCCATGGACTATCTCGTGGGACGTCCATAGGGACTATCTGTACTAGAAGTCTATT
1 AGGGAAGTCTGCCATGGACTATCTCGTGGGACATCCATAGGGACTATCTATACTAGAAGTCTATC
*
35032115 ATGTATTATCAAAGTAA
66 AGGTATTATCAAAGTAA
*
35032132 TGGGAAGTCT
1 AGGGAAGTCT
35032142 ACTAGGGTTA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (82 bp):
AGGGAAGTCTGCCATGGACTATCTCGTGGGACATCCATAGGGACTATCTATACTAGAAGTCTATC
AGGTATTATCAAAGTAA
Found at i:35036300 original size:23 final size:23
Alignment explanation
Indices: 35036274--35036318 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
35036264 GCATACATTG
35036274 CTTACGTAGTTATCTTTTTCTTT
1 CTTACGTAGTTATCTTTTTCTTT
35036297 CTTACGTAGTTATCTTTTTCTT
1 CTTACGTAGTTATCTTTTTCTT
35036319 ACTTTACAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.18, G:0.09, T:0.60
Consensus pattern (23 bp):
CTTACGTAGTTATCTTTTTCTTT
Found at i:35042029 original size:17 final size:18
Alignment explanation
Indices: 35042007--35042040 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35041997 CACATTGAAG
35042007 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
35042024 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
35042041 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:35051770 original size:15 final size:16
Alignment explanation
Indices: 35051735--35051776 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
35051725 CTAACCTAAA
35051735 AATAAATAAAAGTAGT
1 AATAAATAAAAGTAGT
* *
35051751 AATAAATAATATTA-T
1 AATAAATAAAAGTAGT
35051766 AATAAATAAAA
1 AATAAATAAAA
35051777 ACAAAAAGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (16 bp):
AATAAATAAAAGTAGT
Found at i:35056724 original size:21 final size:22
Alignment explanation
Indices: 35056700--35056746 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
35056690 TCTTTCCAAA
35056700 TTTTCTCAAA-TT-TCTCTCAAT
1 TTTTCTCAAAGTTGTCTCT-AAT
*
35056721 TTTTGTCAAAGTTGTCTCTAAT
1 TTTTCTCAAAGTTGTCTCTAAT
35056743 TTTT
1 TTTT
35056747 GTAAAAAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 9 0.39
23 5 0.22
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.55
Consensus pattern (22 bp):
TTTTCTCAAAGTTGTCTCTAAT
Done.