Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 110 of 332
Found at i:35402127 original size:19 final size:19
Alignment explanation
Indices: 35402103--35402143 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
35402093 TACTCGATTC
35402103 TTTCATTTTTTGAATTGCA
1 TTTCATTTTTTGAATTGCA
35402122 TTTCATTTTTTGAATTGCA
1 TTTCATTTTTTGAATTGCA
35402141 TTT
1 TTT
35402144 ATTGAAGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.61
Consensus pattern (19 bp):
TTTCATTTTTTGAATTGCA
Found at i:35405318 original size:26 final size:26
Alignment explanation
Indices: 35405289--35405339 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35405279 ATACCCGGCT
35405289 ATAACA-AATATAAATTCTAACATTTC
1 ATAACAGAATATAAATT-TAACATTTC
* *
35405315 ATAACAGCATATATATTTAACATTT
1 ATAACAGAATATAAATTTAACATTT
35405340 AACTACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (26 bp):
ATAACAGAATATAAATTTAACATTTC
Found at i:35424547 original size:29 final size:29
Alignment explanation
Indices: 35424513--35424586 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
35424503 TAATCAACCA
*
35424513 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
35424542 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
35424571 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
35424587 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:35431884 original size:17 final size:17
Alignment explanation
Indices: 35431864--35431897 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
35431854 AGTGATCGAG
35431864 CCTCTTGAAGAATATGT
1 CCTCTTGAAGAATATGT
35431881 CCTCTTGAAGAATATGT
1 CCTCTTGAAGAATATGT
35431898 GTGCGTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (17 bp):
CCTCTTGAAGAATATGT
Found at i:35435303 original size:38 final size:38
Alignment explanation
Indices: 35435261--35435353 Score: 123
Period size: 38 Copynumber: 2.4 Consensus size: 38
35435251 TAAAGACCCA
* *
35435261 CAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCTG
1 CAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCTG
** *
35435299 CAGGCTTCGTGCTGGTATTATATTAGGGATAAATCCTG
1 CAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCTG
* *
35435337 CAGGCCTAGTGCTGGTA
1 CAGGCTTCGTGCTGGTA
35435354 TTATATTCGG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCTG
Found at i:35435405 original size:43 final size:43
Alignment explanation
Indices: 35435357--35435597 Score: 419
Period size: 43 Copynumber: 5.6 Consensus size: 43
35435347 GCTGGTATTA
35435357 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
35435400 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
35435443 TATTCAGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
35435486 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
35435529 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGTCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
35435572 TATTCGAGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
35435598 GTAATACCGG
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 187 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:35503175 original size:23 final size:22
Alignment explanation
Indices: 35503124--35503175 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
35503114 CCTCGTCTTT
*
35503124 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
35503146 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
35503169 TTCTTTT
1 TTCTTTT
35503176 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:35503184 original size:12 final size:12
Alignment explanation
Indices: 35503133--35503187 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
35503123 TTTCTTTTGT
35503133 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
35503146 -TCATTTTC-TC
1 TTCTTTTTCAAC
35503156 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
35503169 TTCTTTTTCAAT
1 TTCTTTTTCAAC
35503181 TTCTTTT
1 TTCTTTT
35503188 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:35503194 original size:17 final size:18
Alignment explanation
Indices: 35503169--35503206 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
35503159 TTTCTTCAAC
* *
35503169 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
35503186 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
35503204 TTC
1 TTC
35503207 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:35504475 original size:22 final size:21
Alignment explanation
Indices: 35504436--35504488 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
35504426 TTCAACCCGC
*
35504436 TGAATCTTTTTTAAATTTTTAT
1 TGAATTTTTTTTAAATTTTT-T
**
35504458 TGAATTTTTTTTTGATTTTTT
1 TGAATTTTTTTTAAATTTTTT
*
35504479 TGACTTTTTT
1 TGAATTTTTT
35504489 GACTGATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.19, C:0.04, G:0.08, T:0.70
Consensus pattern (21 bp):
TGAATTTTTTTTAAATTTTTT
Found at i:35515900 original size:46 final size:46
Alignment explanation
Indices: 35515833--35515961 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
35515823 TGTAACCCGC
* * * * * *
35515833 CCATAAGTTAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
35515879 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
35515925 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
35515962 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:35524085 original size:48 final size:48
Alignment explanation
Indices: 35524030--35524253 Score: 234
Period size: 48 Copynumber: 4.7 Consensus size: 48
35524020 GTGAAATTGT
** *
35524030 CAATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGAGGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATGTCGAGGC
* *
35524078 CAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATGTTGAGGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* * * * *
35524126 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* * * * * *** * *
35524174 CGATGCCATGTCCCAAACATGGTCCTACACTGGCTCTTATAAGGTGGT
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* *
35524222 CGATGCCATGTCCCAGACATGGTCTTAAACTA
1 CAATGCCATGTCCCAGACATGGTCTTACACTA
35524254 ACACACATAT
Statistics
Matches: 148, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 147 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
Found at i:35524196 original size:96 final size:96
Alignment explanation
Indices: 35524032--35524253 Score: 275
Period size: 96 Copynumber: 2.3 Consensus size: 96
35524022 GAAATTGTCA
** * * *
35524032 ATGCCATGTCTTAGACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCAAGGCCAATGCCATGTCCCAAACA
* ***
35524097 TGGTCTTACACTAGCTCTCATGTTGAGGCCG
66 TGGTCCTACACTAGCTCTCATAAGGAGGCCG
* * *
35524128 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGTATCAATGCCGATGCCATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATATCAAGGCCAATGCCATGTCCCAAAC
* * * *
35524192 ATGGTCCTACACTGGCTCTTATAAGGTGGTCG
65 ATGGTCCTACACTAGCTCTCATAAGGAGGCCG
*
35524224 ATGCCATGTCCCAGACATGGTCTTAAACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
35524254 ACACACATAT
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
96 107 0.99
97 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCAAGGCCAATGCCATGTCCCAAACA
TGGTCCTACACTAGCTCTCATAAGGAGGCCG
Found at i:35539810 original size:49 final size:51
Alignment explanation
Indices: 35539723--35539840 Score: 156
Period size: 49 Copynumber: 2.4 Consensus size: 51
35539713 TGTCAATATA
35539723 TGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGA-C-T
1 TGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACCAT
* *
35539772 TGTCTGGGACATGGCATCGAC-CTCGCTATATG-GAAGCCAGTGTAAGACCAT
1 TGTCTGGGACATGGCATCGACAC-CGATAGATGAG-AGCCAGTGTAAGACCAT
*
35539823 T-TCTAGGACATGGCATCG
1 TGTCTGGGACATGGCATCG
35539841 GCATCTTAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
48 2 0.03
49 41 0.66
50 17 0.27
51 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (51 bp):
TGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACCAT
Found at i:35544135 original size:67 final size:67
Alignment explanation
Indices: 35543952--35544128 Score: 268
Period size: 67 Copynumber: 2.7 Consensus size: 67
35543942 AACACTTAGT
* * *
35543952 ACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 ACCACGCATGTGACCTAGCTACA-TATATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
35544015 AGA
65 AGA
* ** *
35544018 ACCACGTATACGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTG
1 ACCACGCATGTGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTA
35544083 GA
66 GA
35544085 ACCACGCATGTGACCTAGCTACATATATCCCGTAGCTCTCTTGT
1 ACCACGCATGTGACCTAGCTACATATATCCCGTAGCTCTCTTGT
35544129 ACACATGATG
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
66 15 0.15
67 82 0.83
68 2 0.02
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.31
Consensus pattern (67 bp):
ACCACGCATGTGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTA
GA
Found at i:35544674 original size:30 final size:30
Alignment explanation
Indices: 35544640--35544700 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
35544630 TCCTTAACTC
35544640 AAACTTTGGAAAAATTACAATTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
* * * * *
35544670 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
35544700 A
1 A
35544701 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTTCCCCT
Found at i:35548483 original size:18 final size:18
Alignment explanation
Indices: 35548460--35548497 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
35548450 TCTCTTGTAC
35548460 ACATGGTGAACACTTAGT
1 ACATGGTGAACACTTAGT
*
35548478 ACATGGTGAACATTTAGT
1 ACATGGTGAACACTTAGT
35548496 AC
1 AC
35548498 CACCCATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (18 bp):
ACATGGTGAACACTTAGT
Found at i:35550501 original size:27 final size:28
Alignment explanation
Indices: 35550417--35550514 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
35550407 CATGAGATTG
* * * *
35550417 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
35550446 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
35550474 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
35550501 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
35550515 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:35550525 original size:27 final size:27
Alignment explanation
Indices: 35550445--35550527 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
35550435 TAAATTGTAC
* *
35550445 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
35550473 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
35550500 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
35550527 A
1 A
35550528 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:35550528 original size:29 final size:27
Alignment explanation
Indices: 35550417--35550528 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
35550407 CATGAGATTG
** * *
35550417 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
35550446 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
35550474 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
35550501 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
35550529 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:35558683 original size:27 final size:28
Alignment explanation
Indices: 35558599--35558696 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
35558589 CATGAGATTG
* * * *
35558599 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
35558628 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
35558656 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
35558683 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
35558697 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:35558707 original size:27 final size:27
Alignment explanation
Indices: 35558627--35558709 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
35558617 TAAATTGTAC
* *
35558627 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
35558655 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
35558682 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
35558709 A
1 A
35558710 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:35558710 original size:29 final size:27
Alignment explanation
Indices: 35558599--35558710 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
35558589 CATGAGATTG
** * *
35558599 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
35558628 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
35558656 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
35558683 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
35558711 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:35560700 original size:30 final size:30
Alignment explanation
Indices: 35560666--35560726 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
35560656 TCCTTAACTC
35560666 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
35560696 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
35560726 A
1 A
35560727 GGCTCGGGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:35564047 original size:48 final size:48
Alignment explanation
Indices: 35563993--35564210 Score: 249
Period size: 48 Copynumber: 4.5 Consensus size: 48
35563983 GTGAAATTGT
* *
35563993 CGATGCCATGCCCCAGACATGGTCTTACACTGGCT-TACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATGTCGAGGC
* * **
35564041 TGATGCCATGCCCCAGACATGGTCTTACACTAAATCTCATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* * * * * * *
35564089 TGATGCCATGTCCCAAACATGGTCTTACACTATCTCTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* * *** *
35564137 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAGGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
35564185 CGATGCCATGTCCCAGACATGGTCTT
1 CGATGCCATGTCCCAGACATGGTCTT
35564211 CCTCTAGCAC
Statistics
Matches: 144, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 143 0.99
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
Found at i:35572956 original size:54 final size:54
Alignment explanation
Indices: 35572890--35573018 Score: 156
Period size: 54 Copynumber: 2.4 Consensus size: 54
35572880 ATACCCCCAG
* *
35572890 TTGTAAAATTACC-AAAGTACCCCCAGTTTATAAAATTACCCAAACAT-C-CTTGAT
1 TTGTAAAATTACCGAAA-TACCCCCAGTTTACAAAATTA-CCAAA-ATACACTCGAT
* * *
35572944 TTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACACTCGAT
1 TTGTAAAATTACCGAAATACCCCCAGTTTACAAAATTACCAAAATACACTCGAT
*
35572998 TTGTAAAATTACTGAAATACC
1 TTGTAAAATTACCGAAATACC
35573019 TTCGACTTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
52 2 0.03
53 5 0.08
54 56 0.85
55 3 0.05
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCGAAATACCCCCAGTTTACAAAATTACCAAAATACACTCGAT
Found at i:35572973 original size:27 final size:28
Alignment explanation
Indices: 35572869--35573035 Score: 134
Period size: 27 Copynumber: 6.2 Consensus size: 28
35572859 TTAGTTTACC
* *
35572869 AAATTACTGAAATACCCCCAG--TTGTA
1 AAATTACCGAAATACCCTCAGATTTGTA
* *
35572895 AAATTACC-AAAGTACCCCCAG-TTTATA
1 AAATTACCGAAA-TACCCTCAGATTTGTA
* * * *
35572922 AAATTACCCAAACATCCT-TGATTTGTA
1 AAATTACCGAAATACCCTCAGATTTGTA
*
35572949 AAATTACCGAAATACCCTCAG-TTTGCA
1 AAATTACCGAAATACCCTCAGATTTGTA
** *
35572976 AAATTACTAAAATACACTC-GATTTGTA
1 AAATTACCGAAATACCCTCAGATTTGTA
* * *
35573003 AAATTACTGAAATACCTTC-GACTTGTA
1 AAATTACCGAAATACCCTCAGATTTGTA
35573030 AAATTA
1 AAATTA
35573036 TCAAAGTACC
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
25 3 0.03
26 18 0.16
27 90 0.78
28 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
AAATTACCGAAATACCCTCAGATTTGTA
Found at i:35573029 original size:81 final size:80
Alignment explanation
Indices: 35572869--35573048 Score: 186
Period size: 81 Copynumber: 2.2 Consensus size: 80
35572859 TTAGTTTACC
* * *
35572869 AAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCCCAGTTGCAAAATTACCAAAATACCCCCAGTTTATAAAATTACCCAAA
*
35572934 CATCCTTGATTTGTA
66 CATCCTTGACTTGTA
* * * * * **
35572949 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACACTC-GATTTGTAAAATTACTGA
1 AAATTACCGAAATACCCCCAG-TTGCAAAATTACCAAAATACCCCCAG-TTTATAAAATTACCCA
*
35573013 AATA-CCTTCGACTTGTA
64 AACATCCTT-GACTTGTA
*
35573030 AAATTATC-AAAGTACCCCC
1 AAATTACCGAAA-TACCCCC
35573049 GATTTACAGA
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
80 27 0.33
81 55 0.67
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCAGTTGCAAAATTACCAAAATACCCCCAGTTTATAAAATTACCCAAA
CATCCTTGACTTGTA
Found at i:35573052 original size:54 final size:54
Alignment explanation
Indices: 35572941--35573053 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
35572931 AAACATCCTT
* *
35572941 GATTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACACTC
1 GATTTGTAAAATTACCGAAATACCCTCAGCTTGCAAAATTACTAAAATACACCC
* * * * *
35572995 GATTTGTAAAATTACTGAAATACCTTC-GACTTGTAAAATTA-TCAAAGTACCCCC
1 GATTTGTAAAATTACCGAAATACCCTCAG-CTTGCAAAATTACT-AAAATACACCC
35573049 GATTT
1 GATTT
35573054 ACAGAATTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 2 0.04
54 48 0.96
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (54 bp):
GATTTGTAAAATTACCGAAATACCCTCAGCTTGCAAAATTACTAAAATACACCC
Found at i:35573123 original size:27 final size:27
Alignment explanation
Indices: 35573092--35573411 Score: 401
Period size: 27 Copynumber: 11.9 Consensus size: 27
35573082 CAAAATTATT
35573092 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
35573119 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
35573146 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
35573173 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
35573200 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
35573227 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
35573254 GAAATACCCTTATAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
35573281 GAAATACTCC-TGTAGGGTAGAATTACT
1 GAAATAC-CCTTGTAGGGTAGAAATACC
* * * ** *
35573308 AAAATATCCTTATAGGACAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
35573335 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * * *
35573362 GAAATACCCCTGCAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
35573389 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
35573412 CACCATTTTG
Statistics
Matches: 254, Mismatches: 37, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.02
27 247 0.97
28 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACC
Found at i:35574097 original size:27 final size:28
Alignment explanation
Indices: 35574067--35574138 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
35574057 TCTGTTAAGT
* *
35574067 GGCTTTGCCACATTATCTGT-TCTGGTG
1 GGCTCTGCCACAATATCTGTATCTGGTG
35574094 GGCTCTGCCACAATATCTGTATCTGGT-
1 GGCTCTGCCACAATATCTGTATCTGGTG
* *
35574121 GACTCTGTCACAATATCT
1 GGCTCTGCCACAATATCT
35574139 ATTCTGGCAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 34 0.85
28 6 0.15
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (28 bp):
GGCTCTGCCACAATATCTGTATCTGGTG
Found at i:35574305 original size:25 final size:25
Alignment explanation
Indices: 35574277--35574330 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
35574267 TAATTCTGAC
*
35574277 TCTGTTACCTGATACTGATTCTAAT
1 TCTGTCACCTGATACTGATTCTAAT
* *
35574302 TCTGTCACCTGATTCTGATTCTGAT
1 TCTGTCACCTGATACTGATTCTAAT
35574327 TCTG
1 TCTG
35574331 ATTCTCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (25 bp):
TCTGTCACCTGATACTGATTCTAAT
Found at i:35574319 original size:6 final size:6
Alignment explanation
Indices: 35574310--35574347 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
35574300 ATTCTGTCAC
* *
35574310 CTGATT CTGATT CTGATT CTGATT CTCATT TTGATT CT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT CT
35574348 AGTTCTAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.16, C:0.18, G:0.13, T:0.53
Consensus pattern (6 bp):
CTGATT
Found at i:35575206 original size:27 final size:26
Alignment explanation
Indices: 35575153--35575226 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
35575143 TAAGTGGTTT
* *
35575153 TGCCACATTATCTATTCTGGTGGCTC
1 TGCCACAATATCTATTCTGGTGACTC
*
35575179 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTAT-TCTGGTGACTC
**
35575206 TATCACAATATCTATTCTGGT
1 TGCCACAATATCTATTCTGGT
35575227 AGCCATGCTG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (26 bp):
TGCCACAATATCTATTCTGGTGACTC
Found at i:35575401 original size:25 final size:25
Alignment explanation
Indices: 35575343--35575401 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
35575333 TTACATTCAC
* * *
35575343 ATTCTAATTTTGATTCTGTTACCTG
1 ATTCTGATTTTGATTCTATCACCTG
* *
35575368 ATACCGATTTTGATTCTATCACCTG
1 ATTCTGATTTTGATTCTATCACCTG
35575393 ATTCTGATT
1 ATTCTGATT
35575402 CTCATTTTGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (25 bp):
ATTCTGATTTTGATTCTATCACCTG
Found at i:35577960 original size:51 final size:50
Alignment explanation
Indices: 35577884--35578077 Score: 232
Period size: 50 Copynumber: 3.9 Consensus size: 50
35577874 TATTGTGAGG
* * * *
35577884 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGA
* * *
35577935 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-AGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-ATTAGA
* * *
35577985 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGA
* *
35578035 TGCA--TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
35578078 GCTTTGGCTA
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
49 36 0.29
50 48 0.38
51 41 0.33
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGA
Found at i:35590388 original size:39 final size:40
Alignment explanation
Indices: 35590274--35590455 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
35590264 GCTACTCGTT
*
35590274 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
35590314 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
35590354 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
35590393 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
35590434 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
35590456 AGACATCATT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:35590418 original size:79 final size:80
Alignment explanation
Indices: 35590276--35590455 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
35590266 TACTCGTTCA
* *
35590276 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
35590341 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
35590356 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
35590418 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
35590435 AAAGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
35590456 AGACATCATT
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.68
80 24 0.28
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:35593523 original size:68 final size:68
Alignment explanation
Indices: 35593439--35593595 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
35593429 CTTAAAATTA
* * * *
35593439 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTATTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACT-ACCATATATGCTATTTTATTTAGTAA
35593503 ATGT
65 ATGT
* * * * * *
35593507 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
35593572 TGT
66 TGT
*
35593575 AGCTGTCCGAATCTGTT-GATT
1 AGCTGTCCGAATGTGTTAGATT
35593596 TCACAGTTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 3 0.04
68 72 0.95
69 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
TGT
Found at i:35595594 original size:46 final size:46
Alignment explanation
Indices: 35595526--35595662 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
35595516 TATATATACA
* * *
35595526 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* * * *
35595572 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATAAC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* *
35595618 TATCTCATACACATTTCGCATTAGCCATTTGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATAT
35595663 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
Found at i:35595693 original size:47 final size:47
Alignment explanation
Indices: 35595636--35595924 Score: 380
Period size: 47 Copynumber: 6.1 Consensus size: 47
35595626 ACACATTTCG
* * *
35595636 CATTAGCCATTTGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * *
35595683 CATTGGCCATTCGACCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
35595730 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * **
35595777 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
35595824 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
35595875 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
35595922 CAT
1 CAT
35595925 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 176 0.81
49 2 0.01
51 40 0.18
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:35595777 original size:25 final size:25
Alignment explanation
Indices: 35595748--35595825 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 25
35595738 ATTCGGCCTT
35595748 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
** *
35595773 AT--CACATTGGCCA--TTCGACCTT-
1 ATCACACATACG-CATGTTC-ACATTC
35595795 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
35595820 ATCACA
1 ATCACA
35595826 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 5 0.12
23 12 0.30
24 12 0.30
25 11 0.28
ACGTcount: A:0.31, C:0.32, G:0.09, T:0.28
Consensus pattern (25 bp):
ATCACACATACGCATGTTCACATTC
Found at i:35595800 original size:22 final size:22
Alignment explanation
Indices: 35595679--35595800 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
35595669 GTTCACATTC
35595679 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
* * *
35595701 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
35595725 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
* * *
35595748 ATCACACAT-ACGCATGTTC-ACATT
1 ATCACA-TTGGC-CA--TTCGACCTT
35595772 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
35595795 ATCACA
1 ATCACA
35595801 CATACGCATG
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 25 0.35
23 14 0.19
24 14 0.19
25 19 0.26
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:35603650 original size:24 final size:24
Alignment explanation
Indices: 35603599--35603660 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
35603589 AATATCCAAT
* * *
35603599 GCACTATGTGTGCAGTTTACTATG
1 GCACTATGTGTGCAGTGTAATATA
35603623 GCACTATGTGTGCGAGTGTAAT-TA
1 GCACTATGTGTGC-AGTGTAATATA
*
35603647 GCACTACGTGTGCA
1 GCACTATGTGTGCA
35603661 AATTCGGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 1 0.03
24 26 0.79
25 6 0.18
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCAGTGTAATATA
Found at i:35610540 original size:33 final size:34
Alignment explanation
Indices: 35610490--35610575 Score: 93
Period size: 34 Copynumber: 2.6 Consensus size: 34
35610480 GCAGTGCAAA
* * ** *
35610490 CAGTCTGGGCCTAAGCCC-TAACGGTAGCAATAT
1 CAGTGTGGGCCTTAGCCCATAACGACAACAATAT
* * *
35610523 TAGTGTGGGCCTTAGCCCATTACGACAACAGTAT
1 CAGTGTGGGCCTTAGCCCATAACGACAACAATAT
35610557 CAGTGTGGGCCTTAGCCCA
1 CAGTGTGGGCCTTAGCCCA
35610576 ATTCAGTATA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 15 0.35
34 28 0.65
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATAACGACAACAATAT
Found at i:35617149 original size:14 final size:14
Alignment explanation
Indices: 35617132--35617158 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35617122 TTACAGTTCC
35617132 AGTGTTTATTAACT
1 AGTGTTTATTAACT
35617146 AGTGTTTATTAAC
1 AGTGTTTATTAAC
35617159 GGACGTTCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (14 bp):
AGTGTTTATTAACT
Found at i:35632698 original size:44 final size:44
Alignment explanation
Indices: 35632566--35632720 Score: 128
Period size: 42 Copynumber: 3.6 Consensus size: 44
35632556 CAATGTCGAC
** *
35632566 GTCCCAGACATGGTCTTACATGT-AAT-TCAAAATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACATAAATATC-AAATCGATGCCTGT
* * * *
35632609 GTCCCATACAGGGTCTTATAC--GAA-ATCAGATAT-GATGCC-GAT
1 GTCCCAGACATGGTCTTACACATAAATATCA-A-ATCGATGCCTG-T
*
35632651 GTCCCGGACATGGTCTTACACATAAATATCAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACACATAAATATCAAATCGATGCCTGT
35632695 GTCCCAGACACT-GTCTTACACGATAA
1 GTCCCAGACA-TGGTCTTACAC-ATAA
35632721 TTCAGTTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
41 1 0.01
42 29 0.33
43 21 0.24
44 28 0.31
45 10 0.11
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACATAAATATCAAATCGATGCCTGT
Found at i:35633170 original size:65 final size:65
Alignment explanation
Indices: 35633066--35633198 Score: 257
Period size: 65 Copynumber: 2.0 Consensus size: 65
35633056 TTTCACACTT
*
35633066 TAACAATTTAGTCCATTTTTCACAAAATCATCAATATGCAAAATTTCTCTGCAACAAGGGCTAGC
1 TAACAATTTAGTCCATTTTTCACAAAATCATCAATATGCAAAATTTCTCTACAACAAGGGCTAGC
35633131 TAACAATTTAGTCCATTTTTCACAAAATCATCAATATGCAAAATTTCTCTACAACAAGGGCTAGC
1 TAACAATTTAGTCCATTTTTCACAAAATCATCAATATGCAAAATTTCTCTACAACAAGGGCTAGC
35633196 TAA
1 TAA
35633199 ATTTTCATGG
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (65 bp):
TAACAATTTAGTCCATTTTTCACAAAATCATCAATATGCAAAATTTCTCTACAACAAGGGCTAGC
Found at i:35639625 original size:45 final size:45
Alignment explanation
Indices: 35639556--35639774 Score: 292
Period size: 45 Copynumber: 5.0 Consensus size: 45
35639546 TATCGTACAG
* *
35639556 TACTATTCGGGCCTTTGAGGCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
35639601 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
35639646 TACTATTCAGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
35639691 TGA-TA-TCGGG-CTTTGAGCCTAGCAAGCTATAATGCCGGTGAAA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
35639734 TGA-TA-TCGGG-CTTTGAGCCTAGCAGG-TGA-AATGCCGGTGAA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGAA
35639775 TGAATTCAGG
Statistics
Matches: 162, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
42 13 0.08
43 57 0.35
44 4 0.02
45 87 0.54
46 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:35642735 original size:21 final size:21
Alignment explanation
Indices: 35642709--35642749 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
35642699 AGCTTAAATG
35642709 ATGGTTGAATAAGTA-GAATTC
1 ATGGTTGAA-AAGTATGAATTC
35642730 ATGGTTGAAAAGTATGAATT
1 ATGGTTGAAAAGTATGAATT
35642750 GAAATTGACG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.34
Consensus pattern (21 bp):
ATGGTTGAAAAGTATGAATTC
Found at i:35644104 original size:39 final size:39
Alignment explanation
Indices: 35644036--35644155 Score: 195
Period size: 39 Copynumber: 3.1 Consensus size: 39
35644026 CATGGTATTT
* * *
35644036 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTG
*
35644075 GAAATATATCCGGACTTGAAGTCCACAGGCTATGTGCTG
1 GAAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTG
*
35644114 GAAATATATCCGGACTTGAAGTCCGCAGGCTACGTGCTG
1 GAAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTG
35644153 GAA
1 GAA
35644156 TGGTACCCGG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (39 bp):
GAAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTG
Found at i:35651681 original size:14 final size:14
Alignment explanation
Indices: 35651662--35651692 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35651652 AATATATTAT
35651662 TTAAAAATAAAAAA
1 TTAAAAATAAAAAA
*
35651676 TTAAAACTAAAAAA
1 TTAAAAATAAAAAA
35651690 TTA
1 TTA
35651693 CCAACACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (14 bp):
TTAAAAATAAAAAA
Found at i:35656892 original size:18 final size:18
Alignment explanation
Indices: 35656869--35656914 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
35656859 TGTAATATTT
35656869 TATATTATGTTATTCTTA
1 TATATTATGTTATTCTTA
*
35656887 TATATTATGTTATTTTTA
1 TATATTATGTTATTCTTA
35656905 TATATTATGT
1 TATATTATGT
35656915 ATGTAACACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (18 bp):
TATATTATGTTATTCTTA
Found at i:35661543 original size:30 final size:30
Alignment explanation
Indices: 35661486--35661543 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35661476 TTTTCAAGCA
* * **
35661486 TAGGGGTAAAATGGTCGTTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
35661516 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
35661544 ATGTGAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:35664137 original size:21 final size:21
Alignment explanation
Indices: 35664113--35664170 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
35664103 AATGAGAGTG
**
35664113 GAAAAAGAAAGGCAAGAAAAT
1 GAAAAAGAAAGAAAAGAAAAT
* *
35664134 GAAAAAGAGAGAAAAGAAATT
1 GAAAAAGAAAGAAAAGAAAAT
*
35664155 GAAAGAGAAAAGAAAA
1 GAAAAAG-AAAGAAAA
35664171 AGAGTTGTGA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.05
Consensus pattern (21 bp):
GAAAAAGAAAGAAAAGAAAAT
Found at i:35665534 original size:13 final size:13
Alignment explanation
Indices: 35665516--35665544 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
35665506 AATAGTTGTG
35665516 TGTTATTTAATTA
1 TGTTATTTAATTA
35665529 TGTTATTTAATTA
1 TGTTATTTAATTA
35665542 TGT
1 TGT
35665545 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:35668705 original size:5 final size:5
Alignment explanation
Indices: 35668695--35668723 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
35668685 TTATCACCAC
35668695 TATCA TATCA TATCA TATCA TA-CA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA
35668724 GAAGTACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (5 bp):
TATCA
Found at i:35673096 original size:15 final size:16
Alignment explanation
Indices: 35673076--35673108 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
35673066 TTGGACTTTC
35673076 TTATTA-AATTTTAAA
1 TTATTAGAATTTTAAA
*
35673091 TTATTAGTATTTTAAA
1 TTATTAGAATTTTAAA
35673107 TT
1 TT
35673109 GGGTATCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTATTAGAATTTTAAA
Found at i:35676918 original size:19 final size:19
Alignment explanation
Indices: 35676894--35676932 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
35676884 ACTATTTTGC
35676894 ATAAGT-TGCAAAATAAGTG
1 ATAAGTGTGCAAAAT-AGTG
*
35676913 ATAAGTGTGTAAAATAGTG
1 ATAAGTGTGCAAAATAGTG
35676932 A
1 A
35676933 GAATTTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (19 bp):
ATAAGTGTGCAAAATAGTG
Found at i:35686221 original size:21 final size:21
Alignment explanation
Indices: 35686192--35686246 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
35686182 TCGAAATAGT
35686192 CACACGGGCGTGTTACCCTTC
1 CACACGGGCGTGTTACCCTTC
* *
35686213 CACATGGGCGTGTTACCTTTC
1 CACACGGGCGTGTTACCCTTC
35686234 CACACGGGCGTGT
1 CACACGGGCGTGT
35686247 GCCCTATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.15, C:0.33, G:0.27, T:0.25
Consensus pattern (21 bp):
CACACGGGCGTGTTACCCTTC
Found at i:35690980 original size:15 final size:16
Alignment explanation
Indices: 35690960--35690993 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
35690950 ATGGACTTTC
35690960 TTATTA-AATTTTAAA
1 TTATTAGAATTTTAAA
*
35690975 TTATTAGTATTTTAAA
1 TTATTAGAATTTTAAA
35690991 TTA
1 TTA
35690994 GGTATCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTATTAGAATTTTAAA
Found at i:35693894 original size:68 final size:67
Alignment explanation
Indices: 35693822--35693971 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
35693812 CATCATGTGT
* * * *
35693822 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
35693884 ATGTAG
62 ATGTAG
** * *
35693890 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
35693955 AG
66 AG
35693957 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
35693972 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:35693927 original size:64 final size:64
Alignment explanation
Indices: 35693846--35694029 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
35693836 AGACATTATG
* *
35693846 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
35693910 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
35693975 AA
63 AA
* * * *
35693977 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
35694030 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:35701560 original size:27 final size:27
Alignment explanation
Indices: 35701525--35701593 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
35701515 AAGTGTACTA
*
35701525 TACTAGTGGCTTTGCCACATATACTGT
1 TACTGGTGGCTTTGCCACATATACTGT
35701552 TACTGGTGGCTTTGCCACATATACTGT
1 TACTGGTGGCTTTGCCACATATACTGT
*
35701579 TACTGGTAGCTTTGC
1 TACTGGTGGCTTTGC
35701594 TGCGTTACTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTTTGCCACATATACTGT
Found at i:35701650 original size:26 final size:26
Alignment explanation
Indices: 35701578--35701654 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
35701568 ACATATACTG
* * *
35701578 TTACTGGTAGCTTTGCTGCGTTACTGA
1 TTACTGGCAGCTTTGCTGCGATA-TTA
*
35701605 -TACTGGCAACTTTGCTGCGATATTA
1 TTACTGGCAGCTTTGCTGCGATATTA
35701630 TTACTGGCAGCTTTGCTGCGATATT
1 TTACTGGCAGCTTTGCTGCGATATT
35701655 GGTGTGTTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
25 2 0.05
26 42 0.95
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.39
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGATATTA
Found at i:35709436 original size:29 final size:29
Alignment explanation
Indices: 35709370--35709459 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
35709360 CACATACCTA
* * *
35709370 TATATGGCCCACTAGGCCC-AATTATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
35709398 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
35709427 TATATGGCCCATCAGACCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
35709456 TATA
1 TATA
35709460 GTCATGCTCG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
28 18 0.33
29 37 0.67
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:35714088 original size:37 final size:37
Alignment explanation
Indices: 35714030--35714132 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
35714020 CGAATAGTCC
* *
35714030 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
35714067 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
35714104 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
35714133 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:35714331 original size:48 final size:48
Alignment explanation
Indices: 35714273--35714381 Score: 200
Period size: 48 Copynumber: 2.3 Consensus size: 48
35714263 ATATACACAC
*
35714273 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
35714321 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
35714369 ATCTCATATATAT
1 ATCTCATACATAT
35714382 ATTTCACATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:35717020 original size:28 final size:27
Alignment explanation
Indices: 35716988--35717077 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 27
35716978 CACATACCTG
* *
35716988 TATATGACCCACTACGCCCAATCACATT
1 TATATGGCCCA-TAGGCCCAATCACATT
*
35717016 TATATGGCCCATTTGGCCCAAATCACATT
1 TATATGGCCCA-TAGGCCC-AATCACATT
*
35717045 TATACGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCAT-AGGCCCAA-TCACATT
35717074 TATA
1 TATA
35717078 GTCATGCTCG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.30, C:0.31, G:0.11, T:0.28
Consensus pattern (27 bp):
TATATGGCCCATAGGCCCAATCACATT
Found at i:35717053 original size:29 final size:29
Alignment explanation
Indices: 35717003--35717077 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
35716993 GACCCACTAC
* **
35717003 GCCC-AATCACATTTATATGGCCCATTTG
1 GCCCAAATCACATTTATACGGCCCATCAG
35717031 GCCCAAATCACATTTATACGGCCCATCAG
1 GCCCAAATCACATTTATACGGCCCATCAG
*
35717060 GCCCAATTCACATTTATA
1 GCCCAAATCACATTTATA
35717078 GTCATGCTCG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 4 0.10
29 38 0.90
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.28
Consensus pattern (29 bp):
GCCCAAATCACATTTATACGGCCCATCAG
Found at i:35720067 original size:27 final size:27
Alignment explanation
Indices: 35720037--35720132 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 27
35720027 TTAGTTTACC
* *
35720037 AAATTACTAAAATATCCTCGACTAGTA
1 AAATTACTAAAATACCCTCGATTAGTA
* * *
35720064 AAATTACCAAAGTACCCCCGATTTA-TA
1 AAATTACTAAAATACCCTCGA-TTAGTA
* *
35720091 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTAGTA
35720118 AAATTACTAAAATAC
1 AAATTACTAAAATAC
35720133 TCCTGTAAGA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 52 0.93
28 2 0.04
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTAGTA
Found at i:35720176 original size:27 final size:27
Alignment explanation
Indices: 35720144--35720355 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
35720134 CCTGTAAGAT
* * *
35720144 AAAATTACCGTTTTACCCTTGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* * *
35720171 AGAATTACTATTTTACTCTCGA-TTAC
1 AAAATTACCATTTTACCCTCGATTTAC
*
35720197 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* * * *
35720224 AGAATTATCGTTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* *
35720251 AGAATTACCATTTTAGCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
35720278 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCATTTTACCCTCGA-TTTAC
* *
35720305 AAAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
*
35720332 AAAATTACCGTTTTACCCTCGATT
1 AAAATTACCATTTTACCCTCGATT
35720356 GTAAAATTAC
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.14
27 137 0.85
28 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
AAAATTACCATTTTACCCTCGATTTAC
Found at i:35720188 original size:54 final size:53
Alignment explanation
Indices: 35720103--35720230 Score: 141
Period size: 53 Copynumber: 2.4 Consensus size: 53
35720093 ATTACTGAAA
* * * *
35720103 TACCCTCGATTTGTAAAATTACTAAAATACTC-CTGTAAGATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTAAAATACTCTC-G-AAGACAAAATTACCATTT
* *** **
35720157 TACCCTTGATTTATAGAATTACTATTTTACTCTCGATTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTAAAATACTCTCGAAGACAAAATTACCATTT
35720210 TACCCTCGATTTATAGAATTA
1 TACCCTCGATTTATAGAATTA
35720231 TCGTTTTACC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
53 34 0.55
54 27 0.44
55 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (53 bp):
TACCCTCGATTTATAGAATTACTAAAATACTCTCGAAGACAAAATTACCATTT
Found at i:35720192 original size:81 final size:79
Alignment explanation
Indices: 35720117--35720390 Score: 230
Period size: 80 Copynumber: 3.4 Consensus size: 79
35720107 CTCGATTTGT
* * * *
35720117 AAAATTACTAAAATACTCCT-GTAAGATAAAATTACCGTTTTACCCTTGATTTATAGAATTACTA
1 AAAATTACCAAAATAC-CCTCGTATGATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCA
35720181 TTTTACTCTCGATTAC
65 TTTTAC-CTCGATTAC
*** * * *
35720197 AAAATTACCATTTTACCCTCG-ATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCA
1 AAAATTACCAAAATACCCTCGTA-TGATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCA
35720261 TTTTAGCCTCGATTTAC
65 TTTTA-CCTCGA-TTAC
*** * * * * * *
35720278 AAAATTACCATTTTACCCTCAGT-TTACAAAATTACCGTTTTACCCTCAATTTACAAAATTACCG
1 AAAATTACCAAAATACCCTC-GTATGATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCA
**
35720342 TTTTACCCTCGATTGT
65 TTTTA-CCTCGATTAC
** * *
35720358 AAAATTACTGAAATACCCTTGTAGGATAGAAAT
1 AAAATTACCAAAATACCCTCGTATGATA-AAAT
35720391 ACCAAAATAC
Statistics
Matches: 157, Mismatches: 29, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
79 6 0.04
80 76 0.48
81 74 0.47
82 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (79 bp):
AAAATTACCAAAATACCCTCGTATGATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCAT
TTTACCTCGATTAC
Found at i:35720420 original size:27 final size:27
Alignment explanation
Indices: 35720390--35720537 Score: 158
Period size: 27 Copynumber: 5.5 Consensus size: 27
35720380 AGGATAGAAA
35720390 TACCAAAATACCCCTAGTTTGTAAAAT
1 TACCAAAATACCCCTAGTTTGTAAAAT
35720417 TACCAAAATACCCCTAGTTTGTAAAAT
1 TACCAAAATACCCCTAGTTTGTAAAAT
* * ** * *
35720444 TATCGAAATACCATTGGTTTGTGAAAT
1 TACCAAAATACCCCTAGTTTGTAAAAT
*
35720471 TA-CATAAATA-CCCTCAATTTGTAAAAT
1 TACCA-AAATACCCCT-AGTTTGTAAAAT
**
35720498 TACCAAAATACCCCT-GATTTACAAAAT
1 TACCAAAATACCCCTAG-TTTGTAAAAT
*
35720525 TACAAAAATACCC
1 TACCAAAATACCC
35720538 TTGACTTTCT
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.03
27 91 0.91
28 6 0.06
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
TACCAAAATACCCCTAGTTTGTAAAAT
Found at i:35720453 original size:54 final size:54
Alignment explanation
Indices: 35720395--35720565 Score: 150
Period size: 54 Copynumber: 3.1 Consensus size: 54
35720385 AGAAATACCA
*
35720395 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCG
1 AAATACCCCT-GTTTGTAAAATTACCAAAATACCCCTCAATTTGTAAAATTATCG
** * * *
35720449 AAATACCATTGGTTTGTGAAATTA-CATAAATA-CCCTCAATTTGTAAAATTACCA
1 AAATACCCCT-GTTTGTAAAATTACCA-AAATACCCCTCAATTTGTAAAATTATCG
** * * * * * *
35720503 AAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAAAAATTATAG
1 AAATACCCCTG-TTTGTAAAATTACCAAAATACCCCTCAATTTGT-AAAATTATCG
35720559 AAATACC
1 AAATACC
35720566 ATTTGTTTAC
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
53 7 0.08
54 61 0.67
55 9 0.10
56 14 0.15
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATACCCCTGTTTGTAAAATTACCAAAATACCCCTCAATTTGTAAAATTATCG
Found at i:35720600 original size:27 final size:27
Alignment explanation
Indices: 35720493--35720600 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
35720483 CTCAATTTGT
* * *
35720493 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTAAAATACCCTTGGTTTAC
* *
35720520 AAAATTACAAAAATACCCTTGACTTT-C
1 AAAATTACTAAAATACCCTTG-GTTTAC
* *
35720547 TAAAAATTA-TAGAAATACCATTTGTTTAC
1 --AAAATTACTA-AAATACCCTTGGTTTAC
*
35720576 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTAAAATACCCTTGGTTT
35720601 GTAGATTTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
27 40 0.62
28 8 0.12
29 17 0.26
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTAC
Found at i:35721563 original size:25 final size:25
Alignment explanation
Indices: 35721525--35721594 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
35721515 AGGAAGTGCT
* *
35721525 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
35721550 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
35721575 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
35721595 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:35721852 original size:31 final size:31
Alignment explanation
Indices: 35721814--35721928 Score: 198
Period size: 31 Copynumber: 3.7 Consensus size: 31
35721804 CGTTTACAAT
35721814 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
35721845 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
35721876 AAAGGCTTCGGCCCAGTGATATGATTTATTG-
1 AAAGGCTTCGGCCCAGTGATATGATTTA-TGA
*
35721907 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
35721929 TCAAGACTAA
Statistics
Matches: 82, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
30 5 0.06
31 75 0.91
32 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:35724642 original size:43 final size:43
Alignment explanation
Indices: 35724594--35724750 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
35724584 AATTCAGACA
* *
35724594 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCCAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCCAATATCG
* * * *
35724637 ATGCCATTGTCCCAGA-GAGGGTCTTACATAAAATCAAATAT-G
1 ATGCCAATGTCCCAGACG-TGGTCTTACATGAAATCCAATATCG
*** * * *
35724679 ATGCCAATGTCGTGGACATGGTCTTACACGCAACTCTCAA-ATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATG-AAATC-CAATATCG
35724723 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
35724751 CAAAATCACA
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 23 0.26
43 39 0.44
44 27 0.30
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCCAATATCG
Found at i:35727901 original size:28 final size:28
Alignment explanation
Indices: 35727845--35727979 Score: 189
Period size: 28 Copynumber: 4.8 Consensus size: 28
35727835 GACATCAAAT
* *
35727845 ATGGCGCTTTGTGTGCGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* * *
35727873 ATGTCACTTAGTATGTGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
35727901 ATGGCACTTAGTGTACAAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
35727929 ATGACACTTAGTGTGCGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
35727957 ATGGCACTCAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
35727980 CAAATGATTC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:35745575 original size:42 final size:41
Alignment explanation
Indices: 35745475--35745630 Score: 136
Period size: 43 Copynumber: 3.7 Consensus size: 41
35745465 CAATGCCAAC
* * * * *
35745475 GTCCCAAACGTGGTCTTACATGTAATCCAATATCGATGCCACT
1 GTCCCAAACATGGTCTTACACGAAATCAAATA-CGATG-CAAT
* * * * *
35745518 GTCCCAGAGAGGGTCTTACACGAAATCAAATAGGATGCTGAT
1 GTCCCAAACATGGTCTTACACGAAATCAAATACGATGC-AAT
35745560 GTCCCAAACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAAT
1 GTCCCAAACATGGTCTTACACG-AAA--TCAAATACGATG-CAAT
*
35745604 GTCCC-AACGTGGTCTTACACGAAATCA
1 GTCCCAAACATGGTCTTACACGAAATCA
35745631 CATATCAGAA
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 27 0.29
43 43 0.47
44 11 0.12
45 7 0.08
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (41 bp):
GTCCCAAACATGGTCTTACACGAAATCAAATACGATGCAAT
Found at i:35745618 original size:85 final size:85
Alignment explanation
Indices: 35745475--35745630 Score: 228
Period size: 85 Copynumber: 1.8 Consensus size: 85
35745465 CAATGCCAAC
* * *
35745475 GTCCCAAACGTGGTCTTACATGTAATCCAATATCGATGCCACTGTCCCAGAGAGGGTCTTACACG
1 GTCCCAAACATGGTCTTACACGTAATCCAATATCGATGCCAATGTCCCAGAGAGGGTCTTACACG
35745540 AAATCAAATAGGATGCTGAT
66 AAATCAAATAGGATGCTGAT
*
35745560 GTCCCAAACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCCCA-ACG-TGGTCTTAC
1 GTCCCAAACATGGTCTTACACGT-AATC-CAATATCGATGCCAATGTCCCAGA-GAGGGTCTTAC
35745622 ACGAAATCA
63 ACGAAATCA
35745631 CATATCAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
85 39 0.61
86 22 0.34
87 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (85 bp):
GTCCCAAACATGGTCTTACACGTAATCCAATATCGATGCCAATGTCCCAGAGAGGGTCTTACACG
AAATCAAATAGGATGCTGAT
Found at i:35745650 original size:44 final size:42
Alignment explanation
Indices: 35745529--35745650 Score: 108
Period size: 43 Copynumber: 2.8 Consensus size: 42
35745519 TCCCAGAGAG
*
35745529 GGTCTTACACGAAATCA-AAT-AGGATGCTGATGTCCCAAACAT
1 GGTCTTACACGAAATCACAATCA-GATCCT-ATGTCCCAAACAT
* * *
35745571 GGTCTTACACGTAAATCTCAAATC-GATGCCAATGTCCC-AACGT
1 GGTCTTACACG-AAATCAC-AATCAGAT-CCTATGTCCCAAACAT
35745614 GGTCTTACACGAAATCACATATCAGAAATCCTATGTC
1 GGTCTTACACGAAATCACA-ATCAG--ATCCTATGTC
35745651 ATGACATATG
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
41 1 0.02
42 20 0.31
43 21 0.32
44 17 0.26
45 6 0.09
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCACAATCAGATCCTATGTCCCAAACAT
Found at i:35746886 original size:22 final size:21
Alignment explanation
Indices: 35746844--35746895 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
35746834 CAATCAATTT
* *
35746844 CATACTCAATTTCATATCAAAG
1 CATAC-CAATTTAATACCAAAG
*
35746866 CATACCAATTTAACTACCAAAT
1 CATACCAATTTAA-TACCAAAG
35746888 CATACCAA
1 CATACCAA
35746896 GATGGACATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.44, C:0.27, G:0.02, T:0.27
Consensus pattern (21 bp):
CATACCAATTTAATACCAAAG
Found at i:35747589 original size:42 final size:41
Alignment explanation
Indices: 35747524--35747679 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 41
35747514 AACTCGCACA
* * * * *
35747524 ATGCCAACGTCTCAGACGTGGTCTTACATGTTATCAAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATATAATC-AAATCG
* * * * * *
35747566 ATGCCACTGTCCCAGACAAGGTCTTACACAAAATCATATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATATAATCAAAT-CG
*
35747608 ATGCCAATGTCCCAAACATGGTCTTACATATAAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATAT-AA--TCAAATCG
*
35747652 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
35747680 CGAAATCACA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 3 0.03
42 53 0.59
43 2 0.02
44 27 0.30
45 5 0.06
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACATATAATCAAATCG
Found at i:35747667 original size:86 final size:84
Alignment explanation
Indices: 35747521--35747692 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 84
35747511 GTAAACTCGC
* * * * * *
35747521 ACAATGCCAACGTCTCAGACGTGGTCTTACATGTTATCAAAATCGATGCCACTGTCCCAGACAAG
1 ACAATGCCAACGTCCCAAACATGGTCTTACATATAATCAAAATCGATGCCAATGTCCCAGACAAG
*
35747586 GTCTTACACAAAATCATAT
66 GTCTTACACAAAATCACAT
* * *
35747605 ACAATGCCAATGTCCCAAACATGGTCTTACATATAAATCTCAAATCGATGCCAATGTCCCAGACG
1 ACAATGCCAACGTCCCAAACATGGTCTTACATAT-AATC-AAAATCGATGCCAATGTCCCAGACA
* *
35747670 TGGTCTTACACGAAATCACAT
64 AGGTCTTACACAAAATCACAT
35747691 AC
1 AC
35747693 CGAAATCCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
84 29 0.39
85 3 0.04
86 42 0.57
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (84 bp):
ACAATGCCAACGTCCCAAACATGGTCTTACATATAATCAAAATCGATGCCAATGTCCCAGACAAG
GTCTTACACAAAATCACAT
Found at i:35754142 original size:79 final size:81
Alignment explanation
Indices: 35754006--35754188 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
35753996 TCGAATGATG
* *
35754006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
35754070 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
35754085 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
35754147 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
35754165 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
35754189 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:35754204 original size:40 final size:40
Alignment explanation
Indices: 35754007--35754190 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
35753997 CGAATGATGT
* * * *
35754007 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
35754047 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
35754087 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35754125 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35754166 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
35754191 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:35754212 original size:79 final size:79
Alignment explanation
Indices: 35754059--35754223 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
35754049 GGACTAAGAT
* **
35754059 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
35754124 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
35754138 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
35754201 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35754217 CCGAAGG
1 CCGAAGG
35754224 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35755801 original size:33 final size:32
Alignment explanation
Indices: 35755746--35755843 Score: 81
Period size: 33 Copynumber: 3.0 Consensus size: 32
35755736 TAGTTCAACT
* *
35755746 ATGGTCTTACATATGCATTGCCATGACCCTGCC
1 ATGGTCTTACAT-TGCATTGCCATAACCCAGCC
**
35755779 ATGGTCTTACATT-CATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTGCAT--TGCCATAACCCAGCC
** * *
35755812 ATGGTCTTATCATTAAAATGCCATAGCCCAGC
1 ATGGTCTTA-CATTGCATTGCCATAACCCAGC
35755844 TGTGGTATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
31 3 0.06
32 1 0.02
33 44 0.83
34 4 0.08
35 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (32 bp):
ATGGTCTTACATTGCATTGCCATAACCCAGCC
Found at i:35755899 original size:101 final size:101
Alignment explanation
Indices: 35755777--35755985 Score: 294
Period size: 101 Copynumber: 2.1 Consensus size: 101
35755767 CATGACCCTG
* * *
35755777 CCATGGTCTTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAAAATGCCATAGCCCA
1 CCATGGTCTTACATTCATAGTGCCATAACCCAGTTATGATCTTATCATCAAAATGACATAGCCCA
* *
35755842 GCTGTGGTATTACATATAAACACTGTCAAGGTCCAA
66 GCTATGGTATTACATATAAACACTGCCAAGGTCCAA
* * * *
35755878 CCATGGTCTTAC-GTCTGTAGTGCCATAACCCAGTTATGATCTTATCATCAGAATGACATAGCCT
1 CCATGGTCTTACATTC-ATAGTGCCATAACCCAGTTATGATCTTATCATCAAAATGACATAGCCC
* * *
35755942 GGCTATGGTTTTACATATAAACACTGCCATGGTCCAA
65 AGCTATGGTATTACATATAAACACTGCCAAGGTCCAA
35755979 CCATGGT
1 CCATGGT
35755986 TTTTCATTTC
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 2 0.02
101 93 0.98
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (101 bp):
CCATGGTCTTACATTCATAGTGCCATAACCCAGTTATGATCTTATCATCAAAATGACATAGCCCA
GCTATGGTATTACATATAAACACTGCCAAGGTCCAA
Found at i:35774181 original size:27 final size:27
Alignment explanation
Indices: 35774151--35774426 Score: 300
Period size: 27 Copynumber: 10.2 Consensus size: 27
35774141 ATTACCAAAG
*
35774151 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
35774178 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
35774205 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
35774232 TGCCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
35774259 TACCCTCAATTTACAAATTTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
35774286 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
35774313 TACCCTCGATTTATAGAATTAACATTT
1 TACCCTCGATTTACAAAATTACCATTT
** ***
35774340 TACCCTCGATTTACTGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
35774367 TACCCTCGATTTAAAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
35774394 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
35774421 TTCCCT
1 TACCCT
35774427 TAGAGTGTTA
Statistics
Matches: 209, Mismatches: 40, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 209 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:35774198 original size:54 final size:54
Alignment explanation
Indices: 35774151--35774426 Score: 345
Period size: 54 Copynumber: 5.1 Consensus size: 54
35774141 ATTACCAAAG
* * *
35774151 TACCCTCGATTTAAAAAATTACCATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
35774205 TACCCTCGATTTATAGAATTACCGTTTTGCCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * *
35774259 TACCCTCAATTTACAAATTTACCGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * * * ** * *
35774313 TACCCTCGATTTATAGAATTAACATTTTACCCTCGATTTACTGAATTATTGTTT
1 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
35774367 TACCCTCGATTTAAAAAATTATCGTTTTACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
*
35774421 TTCCCT
1 TACCCT
35774427 TAGAGTGTTA
Statistics
Matches: 187, Mismatches: 35, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 187 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
Found at i:35774210 original size:81 final size:81
Alignment explanation
Indices: 35774137--35774426 Score: 339
Period size: 81 Copynumber: 3.6 Consensus size: 81
35774127 CCTCAACTTG
*** * * * *
35774137 TAAAATTACCAAAGTACCCTCGATTTAAAAAATTACCATTTTACCCTTGATTTACAGAATTACTA
1 TAAAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTG
35774202 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* * * * * * *
35774218 TAGAATTACCGTTTTGCCCTCAATTTACAAAATTACTATTTTACCCTCAATTTACA-AATTTACC
1 TAAAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAA-TTACT
35774282 GTTTTACCCTCGATTTA
65 GTTTTACCCTCGATTTA
* * * * * * *
35774299 CAAAATTACTATTTTACCCTCGATTTATAGAATTAACATTTTACCCTCGATTTACTGAATTATTG
1 TAAAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTG
35774364 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* * * *
35774380 AAAAATTATCGTTTTACCCTCAATTTATAAAATTACCATTTTTCCCT
1 TAAAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTACCCT
35774427 TAGAGTGTTA
Statistics
Matches: 172, Mismatches: 35, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
80 2 0.01
81 168 0.98
82 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (81 bp):
TAAAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTG
TTTTACCCTCGATTTA
Found at i:35774777 original size:33 final size:32
Alignment explanation
Indices: 35774728--35774791 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
35774718 CTCGCTGTAA
* *
35774728 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
35774761 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
35774792 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:35774805 original size:27 final size:26
Alignment explanation
Indices: 35774753--35774812 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
35774743 ACATATATAT
*
35774753 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
35774779 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
35774806 ATATCTG
1 ATATCTG
35774813 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:35774968 original size:6 final size:6
Alignment explanation
Indices: 35774959--35775036 Score: 61
Period size: 6 Copynumber: 12.8 Consensus size: 6
35774949 TTACCTGAAA
* * * *
35774959 CTGATT CTGATT CTAATT CTG-TCAC CTAATT CTGATT CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
* *
35775008 CTGATT CTCATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGA-TT CTGAT
35775037 AATGTTTCTT
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
5 2 0.04
6 49 0.89
7 3 0.05
8 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:35780808 original size:34 final size:33
Alignment explanation
Indices: 35780752--35780822 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 33
35780742 TTTATGCATT
35780752 ACTGATACTGTACTGAGTTGGGC-TAAGGCCCAC
1 ACTGATACTGTACTGAGTTGGGCTTAA-GCCCAC
* *
35780785 ACTGATATTGCTACTGA-TATGGGCTTAAGCCCAG
1 ACTGATACTG-TACTGAGT-TGGGCTTAAGCCCAC
35780819 ACTG
1 ACTG
35780823 TTCAACACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
33 10 0.30
34 20 0.61
35 3 0.09
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (33 bp):
ACTGATACTGTACTGAGTTGGGCTTAAGCCCAC
Found at i:35786467 original size:29 final size:29
Alignment explanation
Indices: 35786433--35786506 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
35786423 TAATCAACCA
*
35786433 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
35786462 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
35786491 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
35786507 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:35789411 original size:26 final size:26
Alignment explanation
Indices: 35789366--35789437 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
35789356 GAGGAAGTGC
*
35789366 AAAAGGGC-TTTG-CCTCAGTTTAC-CG
1 AAAAGGGCTTTTGCCCT-AGTTT-CTCA
35789391 AAAAGGGCTTTTGCCCTAGTTTCTCA
1 AAAAGGGCTTTTGCCCTAGTTTCTCA
35789417 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGCTTTTGCCCTAGTT
35789438 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 9 0.21
26 31 0.72
27 3 0.07
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCTAGTTTCTCA
Found at i:35789450 original size:25 final size:26
Alignment explanation
Indices: 35789391--35789450 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
35789381 CAGTTTACCG
35789391 AAAAG-GGCTTTTGCCCTAGTTTCTC
1 AAAAGAGGCTTTTGCCCTAGTTTCTC
35789416 AAAA-AGGGCTTTTGCCCTAGTTAT-T-
1 AAAAGA-GGCTTTTGCCCTAGTT-TCTC
35789441 AAAAGAGGCT
1 AAAAGAGGCT
35789451 AGGCCTCCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
25 12 0.39
26 18 0.58
27 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (26 bp):
AAAAGAGGCTTTTGCCCTAGTTTCTC
Found at i:35789695 original size:31 final size:31
Alignment explanation
Indices: 35789657--35789740 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
35789647 TTTTTATAGT
*
35789657 AAAGGCTTCAGCCCGGTGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
* * *
35789688 AAAGGCTTCGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
35789719 AAAGGCTT-AGGCCCAGT-ATATG
1 AAAGGCTTCA-GCCCAGTGATATG
35789741 CTGAGATTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATAATGA
Found at i:35797369 original size:25 final size:26
Alignment explanation
Indices: 35797296--35797367 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
35797286 GAGGAAATGC
*
35797296 AAAAGGGC-TTTGCCCTAGTTTACCG-
1 AAAAGGGCTTTTGCCCTAGTTTA-TGA
*
35797321 AAAAGGGCTTTTACCCTAGTTTATGA
1 AAAAGGGCTTTTGCCCTAGTTTATGA
*
35797347 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCTAGTT
35797368 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 9 0.22
26 32 0.78
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCTAGTTTATGA
Found at i:35797380 original size:25 final size:26
Alignment explanation
Indices: 35797320--35797380 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
35797310 CTAGTTTACC
*
35797320 GAAAAG-GGCTTTTACCCTAGTTTAT
1 GAAAAGAGGCTTTTACCCCAGTTTAT
*
35797345 GAAAA-AGGGCTTTTGCCCCAG-TTAT
1 GAAAAGA-GGCTTTTACCCCAGTTTAT
*
35797370 TAAAAGAGGCT
1 GAAAAGAGGCT
35797381 AGGCCTCCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 17 0.57
26 13 0.43
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (26 bp):
GAAAAGAGGCTTTTACCCCAGTTTAT
Found at i:35797613 original size:31 final size:31
Alignment explanation
Indices: 35797575--35797658 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
35797565 TTGTTACAGT
35797575 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
35797606 AAAGGCTTTGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
35797637 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
35797659 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:35807093 original size:44 final size:45
Alignment explanation
Indices: 35807009--35807094 Score: 147
Period size: 44 Copynumber: 1.9 Consensus size: 45
35806999 TATGAAATCT
35807009 GAACTCATTGAGTCATGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTCATGGTCTGAGTTCATGATATATGTGACATCC
* *
35807054 GAACTCATTGAGTTATGGTC-GAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTCATGGTCTGAGTTCATGATATATGTGACA
35807095 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 20 0.51
45 19 0.49
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (45 bp):
GAACTCATTGAGTCATGGTCTGAGTTCATGATATATGTGACATCC
Found at i:35817801 original size:94 final size:94
Alignment explanation
Indices: 35817635--35817994 Score: 287
Period size: 94 Copynumber: 3.8 Consensus size: 94
35817625 TGATTTGTGC
* * * *
35817635 GCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGCGAGTCAGTGTAAGACCATGTC
1 GCTACTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTGTAAGACCATGTC
35817700 TGGGACATGGCATCAGCATCCAGACGAGG
66 TGGGACATGGCATCAGCATCCAGACGAGG
* *
35817729 GCTACTGTAAGACATGTCTGGGGA-ATG-TATCAGCCATATTATGAGAGCCTGTGTAAGACCATG
1 GCTACTGTAAGACATGTCT-GGGACATGCT-TCAGCCACATTATGAGAGCCAGTGTAAGACCATG
* * * * *
35817792 TTTGGGACATGGCATCGGCA-CAAAGATGAGT
64 TCTGGGACATGGCATCAGCATC-CAGACGAGG
* ** * * * *
35817823 GCCAGAGTAAGACATGTCTGGGACATGCATCAGCCTCGACA-GA-GATAGCCAATGTAAGA-CAT
1 GCTACTGTAAGACATGTCTGGGACATGCTTCAG-C-C-ACATTATGAGAGCCAGTGTAAGACCAT
* * **
35817885 GTCTGGGGCA-CGCATTGGC-T--AG--GAGTTG
63 GTCTGGGACATGGCATCAGCATCCAGACGAG--G
* * * *
35817913 TGCTAGTGTAAGACATGTCTGCGACATGCATCAG-CACGTATATATGAGAGCCAGTGTAAGACGA
1 -GCTACTGTAAGACATGTCTGGGACATGCTTCAGCCAC--AT-TATGAGAGCCAGTGTAAGACCA
35817977 TGTCTGGGACATGGCATC
62 TGTCTGGGACATGGCATC
35817995 GGCAATATAT
Statistics
Matches: 212, Mismatches: 35, Indels: 38
0.74 0.12 0.13
Matches are distributed among these distances:
87 2 0.01
88 4 0.02
89 1 0.00
90 2 0.01
91 31 0.15
92 14 0.07
93 24 0.11
94 112 0.53
95 18 0.08
96 2 0.01
97 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTACTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCATCCAGACGAGG
Found at i:35817847 original size:47 final size:46
Alignment explanation
Indices: 35817638--35817998 Score: 207
Period size: 47 Copynumber: 7.7 Consensus size: 46
35817628 TTTGTGCGCT
* ** * *
35817638 AGTGTAAGACATGTCTGGGACATGCTTCGGC-CACATTATGCGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACA-AAGATGAGAGCC
* * * * *
35817684 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATC-CAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-CAAAGATGAGAGCC
* * * **
35817732 ACTGTAAGACATGTCTGGGGA-ATGTATCAGC-CATATTATGAGAGCC
1 AGTGTAAGACATGTCT-GGGACATGCATCGGCACA-AAGATGAGAGCC
* * *
35817778 TGTGTAAGACCATGTTTGGGACATGGCATCGGCACAAAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAAAGATGAGAGCC
* * * * *
35817826 AGAGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCAC-AAAGATGAGAGCC
* * * * * * * * *
35817873 AATGTAAGACATGTCTGGGGCACGCATTGG--CTAGGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACAAAGATG-AGAGCC
* * * *
35817917 AGTGTAAGACATGTCTGCGACATGCATCAGCACGTATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAC--AAAGATGAGAGCC
35817965 AGTGTAAGACGATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCA
35817999 ATATATCCCA
Statistics
Matches: 232, Mismatches: 62, Indels: 38
0.70 0.19 0.11
Matches are distributed among these distances:
43 3 0.01
44 28 0.12
46 40 0.17
47 75 0.32
48 62 0.27
49 15 0.06
50 9 0.04
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAAAGATGAGAGCC
Found at i:35824818 original size:30 final size:29
Alignment explanation
Indices: 35824780--35824841 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
35824770 AATCAATTTT
* * *
35824780 CAAGCATAGGGGTAAAATGGTCATTTTGC
1 CAAGCATAGGGGCAAAATAGTCATTTTAC
35824809 CAAGTCATAGGGGCAAAATAGTCATTTTAC
1 CAAG-CATAGGGGCAAAATAGTCATTTTAC
35824839 CAA
1 CAA
35824842 AGTTGTGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 4 0.14
30 25 0.86
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (29 bp):
CAAGCATAGGGGCAAAATAGTCATTTTAC
Found at i:35825254 original size:47 final size:46
Alignment explanation
Indices: 35825182--35825544 Score: 199
Period size: 47 Copynumber: 7.7 Consensus size: 46
35825172 TGATTTGTGC
* *
35825182 GCTAGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* *
35825228 GCTAGTGTAAGACCATGTCTGGGACATGGCAT---CAACATCCA-GACGAA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAT-TATGA-G-A
* * * ** * *
35825275 GGCTAGTGTAGGACATGTTTGGGGCATGCATCATCCATATTATGAAA
1 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* ** *
35825322 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAGAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TTATGAGA
* * * * *
35825370 GCCAGAGTAAGACATGTCTGGGACATGCATCAGCCTCGACA-GA-GATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGC-C-ACATTATGAGA
* * * * * * * *
35825417 GCCAATGTAAGACATGTCTGGGGCACGCATCGGCTAGGAGT-T--GT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGA
* *
35825461 GCTAGTGTAAGACATGTCTGCGACATGCATCAG-CATGCATATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA--CAT-TATGAGA
* *
35825509 GCCAGTGTAAGACCATGTCTTGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
35825545 AATATATCCC
Statistics
Matches: 239, Mismatches: 50, Indels: 51
0.70 0.15 0.15
Matches are distributed among these distances:
43 1 0.00
44 30 0.13
45 9 0.04
46 36 0.15
47 86 0.36
48 49 0.21
49 19 0.08
50 9 0.04
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:35825343 original size:94 final size:94
Alignment explanation
Indices: 35825182--35825541 Score: 287
Period size: 94 Copynumber: 3.8 Consensus size: 94
35825172 TGATTTGTGC
* * * *
35825182 GCTAGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAAAGCCAGTGTAAGACCATGTC
35825247 TGGGACATGGCATCAACATCCAGACGAAG
66 TGGGACATGGCATCAACATCCAGACGAAG
* * * * * *
35825276 GCTAGTGTAGGACATGTTTGGGGCATGCATCATCCATATTATGAAAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAAAGCCAGTGTAAGACCATGTC
**
35825341 TGGGACATGGCATCGGCA--CAGA-GATGAG
66 TGGGACATGGCATCAACATCCAGACGA--AG
* * * * * *
35825369 TGCCAGAGTAAGACATGTCTGGGACATGCATCAGCCTCGACA-GA-GATAGCCAATGTAAGA-CA
1 -GCTAGTGTAAGACATGTCTAGGACATGCATCAG-C-C-ACATTATGAAAGCCAGTGTAAGACCA
* * ** **
35825431 TGTCTGGGGCA-CGCATCGGC-T--AGGA-GTTG
62 TGTCTGGGACATGGCATCAACATCCA-GACGAAG
*
35825460 TGCTAGTGTAAGACATGTCT-GCGACATGCATCAG-CATGCATATATGAGAGCCAGTGTAAGACC
1 -GCTAGTGTAAGACATGTCTAG-GACATGCATCAGCCA--CAT-TATGAAAGCCAGTGTAAGACC
*
35825523 ATGTCTTGGACATGGCATC
61 ATGTCTGGGACATGGCATC
35825542 GGCAATATAT
Statistics
Matches: 216, Mismatches: 34, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
87 1 0.00
88 1 0.00
89 2 0.01
90 1 0.00
91 34 0.16
92 19 0.09
93 24 0.11
94 115 0.53
95 15 0.07
96 2 0.01
97 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAAAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAACATCCAGACGAAG
Found at i:35825439 original size:141 final size:140
Alignment explanation
Indices: 35825185--35825541 Score: 320
Period size: 141 Copynumber: 2.5 Consensus size: 140
35825175 TTTGTGCGCT
* ** * *
35825185 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAGAGTAAGACCATGTCTGG
* * * * *
35825250 GACATGGCATCAACATCCAGACGAAGGCTAGTGTAGGACATGTTTGGGGCATGCATCATCCATAT
66 GACATGGCATCAACATCCAGACGAAGGCCAATGTAAGACATGTCTGGGGCACGCATCATCCATAT
35825315 TATGAAAGCC
131 TATGAAAGCC
* *
35825325 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAGAGATGAGTGCCAGAGTAAGA-CATGTC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCACA-AGATGAGAGCCAGAGTAAGACCATGTC
* * **
35825388 TGGGACAT-GCATCAGCCTCGACAGA-GATA-GCCAATGTAAGACATGTCTGGGGCACGCATCGG
63 TGGGACATGGCATCAACATC--CAGACGA-AGGCCAATGTAAGACATGTCTGGGGCACGCATCAT
* * * * *
35825450 CTAGGAGT-TG--TGCT
125 CCA-TATTATGAAAGCC
* * *
35825464 AGTGTAAGACATGTCT-GCGACATGCATCAG-CATGCATATATGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACATGTCTAG-GACATGCATCGGCCA--CA-AGATGAGAGCCAGAGTAAGACCATGT
*
35825527 CTTGGACATGGCATC
62 CTGGGACATGGCATC
35825542 GGCAATATAT
Statistics
Matches: 178, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
137 9 0.05
138 12 0.07
139 30 0.17
140 31 0.17
141 68 0.38
142 28 0.16
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGATGAGAGCCAGAGTAAGACCATGTCTGG
GACATGGCATCAACATCCAGACGAAGGCCAATGTAAGACATGTCTGGGGCACGCATCATCCATAT
TATGAAAGCC
Found at i:35827317 original size:71 final size:67
Alignment explanation
Indices: 35827240--35827381 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
35827230 TCACCAGATA
* * * * *
35827240 CAGATATTGTGGCTAGGCCACCAAAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAAAACAG----ATATATGTAGCGAAGCCACCAAATTGCAGCGA
35827305 GGCTGC
62 GGCTGC
* * *
35827311 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTAGCGAGGCCACCAAATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAAAACAGATATATGTAGCGAAGCCACCAAATTGCAGCGAGGCT
*
35827376 TC
66 GC
35827378 CAGA
1 CAGA
35827382 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 38 0.61
71 24 0.39
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAAAACAGATATATGTAGCGAAGCCACCAAATTGCAGCGAGGCT
GC
Found at i:35833883 original size:137 final size:138
Alignment explanation
Indices: 35833675--35833955 Score: 465
Period size: 137 Copynumber: 2.0 Consensus size: 138
35833665 AAGAACATAC
* ** *
35833675 ATATAGTTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATC
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATGTATC
* *
35833740 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAATTATAATAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
*
35833805 TGGAAGGA
131 TGGAAAGA
* *
35833813 ATATAATTAATTTATGAATTTGATTCATAC-AAATATTAATTGTATATATTTTACCAAATGTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATGTATC
*
35833877 AATATAAACAATTATAATAATTAATTTCGGTCAATATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAATTATAATAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
35833942 TGGAAAGA
131 TGGAAAGA
35833950 ATATAA
1 ATATAA
35833956 GTCATTTTTC
Statistics
Matches: 133, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
137 105 0.79
138 28 0.21
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.40
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATGTATC
AATATAAACAATTATAATAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
TGGAAAGA
Found at i:35837255 original size:25 final size:25
Alignment explanation
Indices: 35837216--35837306 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
35837206 ATTCCGACTC
*
35837216 ACAGCTTGTGTGAGCATACCAATTT
1 ACAGCTCGTGTGAGCATACCAATTT
* * * *
35837241 ATAGCTCGTGAGAGCATGCCAATCT
1 ACAGCTCGTGTGAGCATACCAATTT
** *
35837266 ACAGCTCAAGTGAGCATACTAATTT
1 ACAGCTCGTGTGAGCATACCAATTT
*
35837291 ACAGCTCGTATGAGCA
1 ACAGCTCGTGTGAGCA
35837307 AACATGTGCA
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCAATTT
Found at i:35839829 original size:29 final size:29
Alignment explanation
Indices: 35839791--35839869 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 29
35839781 ATATCTCTGA
*
35839791 AAGTAAGCCTTAGTGGTGATCTCTGTTAT
1 AAGTAAGCCTTTGTGGTGATCTCTGTTAT
* *
35839820 AATTAAGCCTTTGTGGTGATCTGTGTTAT
1 AAGTAAGCCTTTGTGGTGATCTCTGTTAT
*
35839849 CAGTAAGCCTTTGTGGTGATC
1 AAGTAAGCCTTTGTGGTGATC
35839870 CCCGTCAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (29 bp):
AAGTAAGCCTTTGTGGTGATCTCTGTTAT
Found at i:35845567 original size:20 final size:19
Alignment explanation
Indices: 35845542--35845602 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
35845532 TTGTATGGGT
*
35845542 TTGCACTTCGGTGCCTCTG
1 TTGCACTTCAGTGCCTCTG
*
35845561 ATTGCACATT-TGTGCCTCTG
1 -TTGCAC-TTCAGTGCCTCTG
*
35845581 TATGCACTTCAGTGCCTTTG
1 T-TGCACTTCAGTGCCTCTG
35845601 TT
1 TT
35845603 ACGCATTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
19 4 0.11
20 29 0.83
21 2 0.06
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.41
Consensus pattern (19 bp):
TTGCACTTCAGTGCCTCTG
Found at i:35852540 original size:10 final size:10
Alignment explanation
Indices: 35852519--35852547 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
35852509 TGAATTTCAA
35852519 TTTTTTGA-T
1 TTTTTTGACT
35852528 TTTTTTGACT
1 TTTTTTGACT
35852538 TTTTTTGACT
1 TTTTTTGACT
35852548 GATTTGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.72
Consensus pattern (10 bp):
TTTTTTGACT
Found at i:35857699 original size:27 final size:27
Alignment explanation
Indices: 35857668--35857845 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
35857658 TAAATTGTAC
*
35857668 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
35857695 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
35857721 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
*
35857749 GGCACTAAGTGTGC-AAGTTGACTATGT
1 AGCACTAAGTGTGCGAA-TTGACTATGT
* *
35857776 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
35857804 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
35857831 AGCACTGAGTTTGCG
1 AGCACTAAGTGTGCG
35857846 GACTTAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.02
27 100 0.78
28 26 0.20
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Done.