Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 111 of 332
Found at i:35867438 original size:13 final size:13
Alignment explanation
Indices: 35867420--35867451 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
35867410 TGCACATGTC
35867420 CGTGTCCATGACT
1 CGTGTCCATGACT
35867433 CGTGTCCATGACT
1 CGTGTCCATGACT
35867446 CGTGTC
1 CGTGTC
35867452 TCCCACACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.25, T:0.31
Consensus pattern (13 bp):
CGTGTCCATGACT
Found at i:35872061 original size:27 final size:26
Alignment explanation
Indices: 35872017--35872068 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
35872007 CTCGTTGCAA
*
35872017 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
35872044 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
35872069 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:35883190 original size:42 final size:42
Alignment explanation
Indices: 35883143--35883234 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
35883133 TGGCCCTTAG
35883143 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
35883185 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
35883227 GCCCATTT
1 GCCCATTT
35883235 GGGGAGACTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
Found at i:35883410 original size:25 final size:25
Alignment explanation
Indices: 35883382--35883451 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
35883372 CTCTTTTAAT
*
35883382 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCAG-TA
35883407 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
35883432 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
35883452 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 37 0.88
26 5 0.12
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:35884408 original size:27 final size:27
Alignment explanation
Indices: 35884378--35884475 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
35884368 GTAAATCTAC
35884378 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
* *
35884405 AAACCAATGGTACTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
**
35884431 AGAAAGTAAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
35884461 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
35884476 TGGTAATTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
26 1 0.02
27 31 0.53
28 7 0.12
29 18 0.31
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:35884482 original size:27 final size:26
Alignment explanation
Indices: 35884465--35884624 Score: 149
Period size: 27 Copynumber: 6.0 Consensus size: 26
35884455 TTTTGTAAAT
35884465 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** *
35884491 TTGAGGGTATTTTGGTAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
*** * *
35884518 CCAATAGTATTTCGATAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
35884545 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
* **
35884572 CTAGGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTA-CAAA
** *
35884600 CAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
35884625 TCGAGGGTAA
Statistics
Matches: 105, Mismatches: 25, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.03
27 99 0.94
28 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:35884553 original size:81 final size:81
Alignment explanation
Indices: 35884443--35884591 Score: 230
Period size: 81 Copynumber: 1.8 Consensus size: 81
35884433 AAAGTAAAGG
* ** *
35884443 GTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGT
1 GTATTTCGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGT
35884507 AATTTCACAAACCAATA
65 AATTTCACAAACCAATA
35884524 GTATTTCGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GTATTTCGATAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
35884588 AATT
65 AATT
35884592 CTATCCTACA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
GTATTTCGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTA
ATTTCACAAACCAATA
Found at i:35884686 original size:27 final size:27
Alignment explanation
Indices: 35884623--35884821 Score: 247
Period size: 27 Copynumber: 7.3 Consensus size: 27
35884613 GTAATTTCAC
* *
35884623 AATCGAGGGTAAAACGGTAATTTTTCTA
1 AATCGAGGGTAAAATGGTAA-TTTTATA
35884651 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTTTATA
** *
35884678 AATTAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
35884705 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
35884732 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * *
35884759 AATCGAGGGTGAAACGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * *
35884786 AATTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
35884813 AATCGAGGG
1 AATCGAGGG
35884822 CATTTTAGTA
Statistics
Matches: 149, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
27 132 0.89
28 17 0.11
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:35887769 original size:23 final size:22
Alignment explanation
Indices: 35887718--35887769 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
35887708 CCTCATCTTT
*
35887718 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
35887740 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
35887763 TTCTTTT
1 TTCTTTT
35887770 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:35891747 original size:12 final size:13
Alignment explanation
Indices: 35891720--35891752 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
35891710 AATCATTTTC
35891720 TCTTTCTTCAACT
1 TCTTTCTTCAACT
*
35891733 TCTTT-TTCAATT
1 TCTTTCTTCAACT
35891745 TCTTTCTT
1 TCTTTCTT
35891753 TTCACATTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (13 bp):
TCTTTCTTCAACT
Found at i:35895693 original size:22 final size:22
Alignment explanation
Indices: 35895667--35895708 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
35895657 TTTTCTTTGT
35895667 TTCTTT-TTCTAATTCATTTCTC
1 TTCTTTCTTC-AATTCATTTCTC
*
35895689 TTCTTTCTTCAATTCTTTTC
1 TTCTTTCTTCAATTCATTTC
35895709 AATTTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (22 bp):
TTCTTTCTTCAATTCATTTCTC
Found at i:35895709 original size:27 final size:26
Alignment explanation
Indices: 35895679--35895745 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
35895669 CTTTTTCTAA
35895679 TTCATTTCTCTTCTTTCTTCA-ATTCTT
1 TTCATTTCTCTTC-TT-TTCACATTCTT
*
35895706 TTCAATTTCTTTTCTTTTCACATTCTT
1 TTC-ATTTCTCTTCTTTTCACATTCTT
*
35895733 TTCACTCTCTCTT
1 TTCA-TTTCTCTT
35895746 TTTGCTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 5 0.15
27 20 0.59
28 9 0.26
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (26 bp):
TTCATTTCTCTTCTTTTCACATTCTT
Found at i:35895722 original size:16 final size:16
Alignment explanation
Indices: 35895701--35895735 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
35895691 CTTTCTTCAA
35895701 TTCTTTTCA-ATTTCTT
1 TTCTTTTCACA-TTCTT
35895717 TTCTTTTCACATTCTT
1 TTCTTTTCACATTCTT
35895733 TTC
1 TTC
35895736 ACTCTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.11, C:0.23, G:0.00, T:0.66
Consensus pattern (16 bp):
TTCTTTTCACATTCTT
Found at i:35895756 original size:22 final size:19
Alignment explanation
Indices: 35895729--35895775 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
35895719 CTTTTCACAT
35895729 TCTTTTCACTCTCTCTTTTTGC
1 TCTTTTCA-T-TCTCTTTTT-C
35895751 TCTTTTCATTCTCTTTTTC
1 TCTTTTCATTCTCTTTTTC
35895770 T-TTTTC
1 TCTTTTC
35895776 CTCACTTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.20
19 2 0.08
20 9 0.36
21 1 0.04
22 8 0.32
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.66
Consensus pattern (19 bp):
TCTTTTCATTCTCTTTTTC
Found at i:35905875 original size:46 final size:46
Alignment explanation
Indices: 35905825--35905997 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
35905815 TGGTTGAGCA
35905825 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
35905871 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
35905916 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
35905964 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35905998 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:35905981 original size:93 final size:93
Alignment explanation
Indices: 35905822--35905992 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
35905812 GGATGGTTGA
* * *
35905822 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
35905887 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
35905915 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
35905980 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
35905993 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35910300 original size:26 final size:26
Alignment explanation
Indices: 35910235--35910301 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
35910225 GGACTATGTT
*
35910235 GCACTAAGTGTGCGAAATGAAATGAT
1 GCACTAAGTGTGCGAAATGAAATGAG
* * *
35910261 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAAATGA-AATGAG
35910288 GCACTAAGT-TGCGA
1 GCACTAAGTGTGCGA
35910302 GTCTAACTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 24 0.67
27 12 0.33
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.22
Consensus pattern (26 bp):
GCACTAAGTGTGCGAAATGAAATGAG
Found at i:35910345 original size:27 final size:27
Alignment explanation
Indices: 35910207--35910354 Score: 115
Period size: 27 Copynumber: 5.5 Consensus size: 27
35910197 AAATTGTACA
* *
35910207 GCACTAAGTGTGCCG-TTCGGACTATGTT
1 GCACTAAGTGTG-CGATT-TGACTATGTG
** *
35910235 GCACTAAGTGTGCGAAATGA-AATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
35910261 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
35910288 GCACTAAGT-TGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
35910315 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
35910342 GCACTAAGTGTGC
1 GCACTAAGTGTGC
35910355 AGGATTGTAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
26 27 0.28
27 52 0.54
28 17 0.18
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:35913556 original size:29 final size:29
Alignment explanation
Indices: 35913514--35913572 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
35913504 ATGCTGAATG
35913514 TTAGAAATTAATGGTAGAAAATAAAAGGT
1 TTAGAAATTAATGGTAGAAAATAAAAGGT
* *
35913543 TTAGAAATTTATGGTAGAAAATAAGAGGT
1 TTAGAAATTAATGGTAGAAAATAAAAGGT
35913572 T
1 T
35913573 GTTGATAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (29 bp):
TTAGAAATTAATGGTAGAAAATAAAAGGT
Found at i:35915181 original size:16 final size:17
Alignment explanation
Indices: 35915149--35915181 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
35915139 GTTATACGAA
35915149 CTTACTTAGCATTTTATG
1 CTTACTTAG-ATTTTATG
35915167 CTTACTTAG-TTTTAT
1 CTTACTTAGATTTTAT
35915182 TTCTATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.55
Consensus pattern (17 bp):
CTTACTTAGATTTTATG
Found at i:35916493 original size:43 final size:43
Alignment explanation
Indices: 35916404--35916498 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
35916394 TGTGATTACA
* * * *
35916404 TGTAAAACCATGTCTGGGACATTGGCATTGTACTGAGATTATG
1 TGTAAGACCATGTCTAGGACATTGGCATCGTAATGAGATTATG
*
35916447 TGTAAGACCATGTCTAGGACATTGGCATCGTTAAT-CGATT-TCG
1 TGTAAGACCATGTCTAGGACATTGGCATCG-TAATGAGATTAT-G
35916490 TGTAAGACC
1 TGTAAGACC
35916499 CTATCTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 41 0.91
44 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATTGGCATCGTAATGAGATTATG
Found at i:35916547 original size:22 final size:22
Alignment explanation
Indices: 35916519--35916564 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
35916509 TATCGCATTG
35916519 TGATAACATATAAGACCATATC
1 TGATAACATATAAGACCATATC
35916541 TGATAACATATAAGACCATATC
1 TGATAACATATAAGACCATATC
35916563 TG
1 TG
35916565 GGATATCGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.28
Consensus pattern (22 bp):
TGATAACATATAAGACCATATC
Found at i:35917933 original size:18 final size:18
Alignment explanation
Indices: 35917910--35917945 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
35917900 CCTTCAATGT
35917910 AAAAAGATAGATATATTG
1 AAAAAGATAGATATATTG
35917928 AAAAAGATAGATATATTG
1 AAAAAGATAGATATATTG
35917946 TCACATCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.28
Consensus pattern (18 bp):
AAAAAGATAGATATATTG
Found at i:35919928 original size:27 final size:27
Alignment explanation
Indices: 35919898--35919999 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
35919888 GTTCTGTTAA
* *
35919898 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
35919925 GTGGCTATGCCACAAACATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
35919952 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
35919979 GTGGCTCTACCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
35920000 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 53 0.80
28 6 0.09
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:35920152 original size:19 final size:19
Alignment explanation
Indices: 35920130--35920186 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
35920120 TTCTAATTTT
35920130 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
35920149 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
35920161 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
35920180 TGATTCT
1 TGATTCT
35920187 AATTCTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
12 8 0.28
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 15 0.52
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:35920165 original size:31 final size:31
Alignment explanation
Indices: 35920130--35920230 Score: 148
Period size: 31 Copynumber: 3.3 Consensus size: 31
35920120 TTCTAATTTT
*
35920130 TGATTCTGTTACCTGATACTGATTCTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
*
35920161 TGATTCTGTTACCTGATACTGATTCTAATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * **
35920192 TGATTCTGTCACCTAATTTTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
35920223 TGATTCTG
1 TGATTCTG
35920231 ATTCTAATTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:35920259 original size:6 final size:6
Alignment explanation
Indices: 35920142--35920241 Score: 78
Period size: 6 Copynumber: 16.3 Consensus size: 6
35920132 ATTCTGTTAC
* * * *
35920142 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTAATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
35920191 CTGATT CTG-TCAC CTAATT TTGATT CTGATT CTGATT CTGATT CTAATT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT
35920240 CT
1 CT
35920242 AATAATGTTT
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
5 3 0.04
6 64 0.86
7 5 0.07
8 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:35921058 original size:49 final size:49
Alignment explanation
Indices: 35921000--35921129 Score: 206
Period size: 49 Copynumber: 2.7 Consensus size: 49
35920990 TATGGAGGAA
* *
35921000 GTATCTGGCAATAAATCTACATTTTCTGGTGGCATGTCCACATTATTCT
1 GTATGTGGCAATAAATCTGCATTTTCTGGTGGCATGTCCACATTATTCT
* *
35921049 GTATGTGGCAATAAATTTGCATTTTCTGGTAGCATGTCCACATTATTCT
1 GTATGTGGCAATAAATCTGCATTTTCTGGTGGCATGTCCACATTATTCT
* *
35921098 GTATGTGGCAATAAATCTGCAATATCTGGTGG
1 GTATGTGGCAATAAATCTGCATTTTCTGGTGG
35921130 TTCAACCACA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (49 bp):
GTATGTGGCAATAAATCTGCATTTTCTGGTGGCATGTCCACATTATTCT
Found at i:35921845 original size:33 final size:33
Alignment explanation
Indices: 35921803--35921868 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
35921793 CTTGTTGCAT
*
35921803 TGTTTTAATTTAATTACGATGTATTCTCTAAAA
1 TGTTTTAATTTAATTACGATGTATTCCCTAAAA
35921836 TGTTTTAATTTAATTACGATGTATTCCCTAAAA
1 TGTTTTAATTTAATTACGATGTATTCCCTAAAA
35921869 CACTAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (33 bp):
TGTTTTAATTTAATTACGATGTATTCCCTAAAA
Found at i:35927601 original size:47 final size:47
Alignment explanation
Indices: 35927534--35928218 Score: 1199
Period size: 47 Copynumber: 14.6 Consensus size: 47
35927524 TATTTGAATA
* * *
35927534 AATGTGAAAGTTTATATATGTGATAAGGCCTAATAGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35927581 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35927628 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35927675 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35927722 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35927769 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35927816 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35927863 AATGTGATAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35927910 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35927957 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35928004 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35928051 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
35928098 AATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
35928145 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35928192 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35928219 TCCCGAAGGG
Statistics
Matches: 615, Mismatches: 23, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 615 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:35928118 original size:25 final size:25
Alignment explanation
Indices: 35928090--35928168 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
35928080 CTAATGGCCG
35928090 ATGTGATGAATGTGAAAATGTATAT
1 ATGTGATGAATGTGAAAATGTATAT
** ***
35928115 ATGTGAT-AA-G-GCCGAATGGCCA-
1 ATGTGATGAATGTG-AAAATGTATAT
*
35928137 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAATGTATAT
35928162 ATGTGAT
1 ATGTGAT
35928169 AGGGCCGAGT
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 7 0.18
25 15 0.39
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAATGTATAT
Found at i:35946643 original size:50 final size:50
Alignment explanation
Indices: 35946515--35946807 Score: 308
Period size: 50 Copynumber: 5.8 Consensus size: 50
35946505 GTTGTGAGAA
* *
35946515 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGT
*
35946567 CACATGTGTAGT-CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * * * * *
35946616 TGCATGTGTAGAACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TT-AGGT
* * * * * *
35946667 CACGTGTGTAGTACTATA-TCCAGGCTACTACGTGTATCGGATGGTTAGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
35946717 CACTTGTGTAGTACTAATTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
35946767 CACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
35946808 GAGCTTCGGT
Statistics
Matches: 201, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
47 3 0.01
48 3 0.01
49 18 0.09
50 109 0.54
51 54 0.27
52 14 0.07
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:35949570 original size:30 final size:30
Alignment explanation
Indices: 35949534--35949590 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
35949524 CCGAGCCTAG
*
35949534 GGGTAAAAGTGTAATTATGCAAAAGTTTAT
1 GGGTAAAAATGTAATTATGCAAAAGTTTAT
* *
35949564 GGGTAAAAATGTAATTTTGCCAAAGTT
1 GGGTAAAAATGTAATTATGCAAAAGTT
35949591 CGTATTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (30 bp):
GGGTAAAAATGTAATTATGCAAAAGTTTAT
Found at i:35957049 original size:30 final size:30
Alignment explanation
Indices: 35957013--35957073 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
35957003 TTCCCGAGCC
*
35957013 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
35957043 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
35957073 T
1 T
35957074 GTATTAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:35980136 original size:42 final size:43
Alignment explanation
Indices: 35980018--35980152 Score: 166
Period size: 42 Copynumber: 3.1 Consensus size: 43
35980008 GGAATGTGAA
* *
35980018 CATCGATCTGAGATATCGTGTAAGACTGTGTCTGGGACACAGG
1 CATCGATCTGAGATTTCGTGTAAGACCGTGTCTGGGACACAGG
* * * *
35980061 CCTCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATAGG
1 CATCGATCTGAGATTT-CGTGTAAGACCGTGTCTGGGACACAGG
* *
35980105 CATCGCATCT-A-ATTTCGTGTAAGACCGTGTCTGAGACAGAGG
1 CATCG-ATCTGAGATTTCGTGTAAGACCGTGTCTGGGACACAGG
35980147 CATCGA
1 CATCGA
35980153 AACTGAATTA
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 29 0.37
43 17 0.22
44 29 0.37
45 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (43 bp):
CATCGATCTGAGATTTCGTGTAAGACCGTGTCTGGGACACAGG
Found at i:35980180 original size:43 final size:42
Alignment explanation
Indices: 35980075--35980180 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 42
35980065 GATTTGAGAT
* * * *
35980075 TTACGTGTAAGACCATGTCTGGGACATAGGCATCGCATCTAA
1 TTACGTGTAAGACCATGTCTGAGACAGAGGCATCGAAACTAA
* *
35980117 TTTCGTGTAAGACCGTGTCTGAGACAGAGGCATCGAAACTGAA
1 TTACGTGTAAGACCATGTCTGAGACAGAGGCATCGAAACT-AA
* *
35980160 TTACATGTAAGACCACGTCTG
1 TTACGTGTAAGACCATGTCTG
35980181 GAACGTCGGC
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 34 0.64
43 19 0.36
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGAGACAGAGGCATCGAAACTAA
Found at i:35984357 original size:16 final size:16
Alignment explanation
Indices: 35984334--35984387 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
35984324 TATTTGGGGG
35984334 ATCAAATTGAGAAGTT
1 ATCAAATTGAGAAGTT
*
35984350 ACCAAATTGAGAAGTT
1 ATCAAATTGAGAAGTT
*
35984366 ATCAATTTGAGAAGTT
1 ATCAAATTGAGAAGTT
35984382 ATCAAA
1 ATCAAA
35984388 GTATGGAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.44, C:0.09, G:0.17, T:0.30
Consensus pattern (16 bp):
ATCAAATTGAGAAGTT
Found at i:35985483 original size:28 final size:29
Alignment explanation
Indices: 35985436--35985490 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
35985426 ACAGGGATTT
35985436 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
* * *
35985465 TCACACTGCCTAG-ACACGCTCGTGTC
1 TCACACGGCCAAGCACACGCCCGTGTC
35985491 ATCACTCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.20, C:0.44, G:0.20, T:0.16
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:35989088 original size:25 final size:25
Alignment explanation
Indices: 35989050--35989099 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
35989040 TGTGTAAGGT
35989050 TTGAGGTCAAATTGAATGAATGTGC
1 TTGAGGTCAAATTGAATGAATGTGC
* *
35989075 TTGAGGTCAGATTGAATGGATGTGC
1 TTGAGGTCAAATTGAATGAATGTGC
35989100 CTTACATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32
Consensus pattern (25 bp):
TTGAGGTCAAATTGAATGAATGTGC
Found at i:35993641 original size:39 final size:39
Alignment explanation
Indices: 35993598--35993713 Score: 169
Period size: 39 Copynumber: 3.0 Consensus size: 39
35993588 CCGTACATAT
* * * *
35993598 TTCTAGCACGTAGCCTGCGGACCTTAAATCTGGATATAA
1 TTCTAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* *
35993637 TTCTAGCACATAGCCTGTGGGCCCTAAGTCCGGATATAA
1 TTCTAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
35993676 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 TTCTAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
35993714 CATCACTGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTCTAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:35998096 original size:53 final size:53
Alignment explanation
Indices: 35997901--35998155 Score: 268
Period size: 55 Copynumber: 4.8 Consensus size: 53
35997891 ATTAGGGTTT
* * *
35997901 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGC-ATTGGT-AAGTTTATAAGGC
* *
35997956 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TATAAGGC
* * *
35998011 AAAGG-TCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * *
35998064 AAGGATATCATGTAAGACAATGTCAAGACATGGCAATGGTAAGTTT-CAA---
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * * *
35998113 AAGGATACCACGTAAGACTATGACAAGTCATGGCAATGGTAAG
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
35998156 GTACCCGTGT
Statistics
Matches: 174, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
49 38 0.22
52 6 0.03
53 48 0.28
54 5 0.03
55 73 0.42
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
Found at i:35998107 original size:108 final size:110
Alignment explanation
Indices: 35997909--35998108 Score: 341
Period size: 108 Copynumber: 1.8 Consensus size: 110
35997899 TTAAGGATAC
*
35997909 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGATATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGAC
* *
35997974 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 AATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
*
35998019 CATGTAAGACCATGCCAAGGCATGGC-ATTGGT-GAGTTTATAAGGCAAGGATATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGAC
*
35998082 AATGTCAAGACATGGCAATGGTAAGTT
66 AATGTCAAGACATGGCAATGATAAGTT
35998109 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
108 53 0.62
109 6 0.07
110 26 0.31
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.24
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGAC
AATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:36001794 original size:39 final size:39
Alignment explanation
Indices: 36001740--36001988 Score: 365
Period size: 39 Copynumber: 6.4 Consensus size: 39
36001730 GACTTTAAGA
* * *
36001740 CCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGC
*
36001779 CCGGATATAACACCAGCACGAATGCCTTCGGGGCTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* *
36001818 TCGGATATAACACCAACACGAATGCCTTCGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
36001857 CCGGATATAACACCAGAACGAATGCCTTCGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* * *
36001896 CCAGATATAACACCAGCACGGATGCCTTCAGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* *
36001935 CCGGATATAACACCAACACGAATGCCTTTGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
36001974 CCAGATATAACACCA
1 CCGGATATAACACCA
36001989 TTATAAAGTC
Statistics
Matches: 189, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 178 0.94
40 11 0.06
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.18
Consensus pattern (39 bp):
CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
Found at i:36002102 original size:28 final size:28
Alignment explanation
Indices: 36002061--36002133 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
36002051 ATTTAATCAT
* *
36002061 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATCTCGCACACTAAGTGTCATTC
* * *
36002089 TTAATATCTCGCACATTAAGTGTCTTTC
1 TCAATATCTCGCACACTAAGTGTCATTC
* *
36002117 TCAATATTTCGTACACT
1 TCAATATCTCGCACACT
36002134 GAGTACCATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (28 bp):
TCAATATCTCGCACACTAAGTGTCATTC
Found at i:36009301 original size:20 final size:20
Alignment explanation
Indices: 36009235--36009301 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
36009225 ATTTTAGTAA
* *
36009235 ACATGGTATGTATAATATGC
1 ACATGATATGTATGATATGC
* *
36009255 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
36009275 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36009295 ACATGAT
1 ACATGAT
36009302 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36009380 original size:25 final size:25
Alignment explanation
Indices: 36009352--36009431 Score: 126
Period size: 25 Copynumber: 3.2 Consensus size: 25
36009342 AGGAAGTGTA
36009352 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
36009377 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
36009401 AAAGGGCTTATGCCCCAGTTATATGAT
1 AAAGGGCTTATGCCCCAG-T-TATGAT
36009428 AAAG
1 AAAG
36009432 CAGTTATGCT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
24 18 0.36
25 24 0.48
26 4 0.08
27 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:36009409 original size:24 final size:24
Alignment explanation
Indices: 36009350--36009422 Score: 128
Period size: 24 Copynumber: 3.0 Consensus size: 24
36009340 GGAGGAAGTG
36009350 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
36009374 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
36009399 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
36009423 ATGATAAAGC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 23 0.50
25 23 0.50
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:36009651 original size:31 final size:31
Alignment explanation
Indices: 36009616--36009678 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
36009606 CATTTACATT
36009616 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
36009647 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36009678 A
1 A
36009679 TTATGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36021998 original size:20 final size:20
Alignment explanation
Indices: 36021983--36022033 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
36021973 GTATGTATAA
36021983 TATGCACATGACATGTATGC
1 TATGCACATGACATGTATGC
36022003 TATGCACATGACATGTATGC
1 TATGCACATGACATGTATGC
36022023 TATGCACATGA
1 TATGCACATGA
36022034 TGTATTCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (20 bp):
TATGCACATGACATGTATGC
Found at i:36022146 original size:23 final size:24
Alignment explanation
Indices: 36022083--36022179 Score: 135
Period size: 25 Copynumber: 4.0 Consensus size: 24
36022073 GGAGGAAGTG
36022083 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
36022107 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
36022132 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
36022155 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
36022180 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.29
24 16 0.24
25 31 0.47
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:36022176 original size:48 final size:49
Alignment explanation
Indices: 36022083--36022179 Score: 137
Period size: 48 Copynumber: 2.0 Consensus size: 49
36022073 GGAGGAAGTG
*
36022083 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCAGTTAT
*
36022132 TAAAAGGGCTT-TGCCCCAGTTATTA-AAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTAGGCC-CCAGTTAT
36022180 ATGATAAAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 9 0.20
48 24 0.55
49 11 0.25
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCAGTTAT
Found at i:36022406 original size:31 final size:31
Alignment explanation
Indices: 36022371--36022434 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36022361 CGTTTACAGT
*
36022371 AAAGGCTTCGGCCCAGTAATATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
36022402 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36022433 AA
1 AA
36022435 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36024744 original size:55 final size:54
Alignment explanation
Indices: 36024657--36024911 Score: 280
Period size: 55 Copynumber: 4.8 Consensus size: 54
36024647 ATTAGGGTTT
*
36024657 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
36024712 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
36024767 AAAGG-T-CTCATGTAAGACCATGCCAAGGCATGGC-ATTTGTGAG-TTCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
36024820 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
36024869 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
36024912 GTACCCGTGT
Statistics
Matches: 173, Mismatches: 18, Indels: 24
0.80 0.08 0.11
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 40 0.23
54 13 0.08
55 69 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:36024863 original size:108 final size:110
Alignment explanation
Indices: 36024665--36024864 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 110
36024655 TTAAGGATAC
*
36024665 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
* *
36024730 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 CATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* *
36024775 CATGTAAGACCATGCCAAGGCATGGC-ATTTGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGA
*
36024837 CCATGCCAAGACATGGCAATGGTAAGTT
65 CCATGCCAAGACATGGCAATGATAAGTT
36024865 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 6 0.07
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
CATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:36028183 original size:43 final size:42
Alignment explanation
Indices: 36028136--36028248 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
36028126 GTGATTTCGA
* *
36028136 GTAAAACCATGTCTAGGACATCGGCATCATAATTGTGATT-CAT
1 GTAAAACCATGTCTGGGACAT-GGCATC-GAATTGTGATTACAT
* * *
36028179 GTAAAACCCTGTCTGGGATAGTGGCATCGACTTGTGATTACAT
1 GTAAAACCATGTCTGGGACA-TGGCATCGAATTGTGATTACAT
* *
36028222 GTAAGACCACGTCTGGGACATTGGCAT
1 GTAAAACCATGTCTGGGACA-TGGCAT
36028249 TGTACGATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 9 0.16
43 48 0.83
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (42 bp):
GTAAAACCATGTCTGGGACATGGCATCGAATTGTGATTACAT
Found at i:36035233 original size:42 final size:42
Alignment explanation
Indices: 36035110--36035265 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
36035100 TGTGTCATAA
* * *
36035110 TGTAAGACCACGTCTGGGA-TGTTGGCATCGATATGTGATTTCG
1 TGTAAGACCATGTCTGGGACAGCTGGCATCGA-ATGTGA-TTCG
* * * * *
36035153 AGGAAGA-CATGTCTAGGACATC-GGCATCTTAATTGTGATTCG
1 TGTAAGACCATGTCTGGGACAGCTGGCATC-GAA-TGTGATTCG
* *
36035195 TGTAAGACCCTGTCTGGGACAG-TGGCATCGACATGTGATTACA
1 TGTAAGACCATGTCTGGGACAGCTGGCATCGA-ATGTGATT-CG
*
36035238 TGTAAGACCAGGTCTGGGAC-GCTGGCAT
1 TGTAAGACCATGTCTGGGACAGCTGGCAT
36035266 TGTACGATAT
Statistics
Matches: 88, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
42 34 0.39
43 54 0.61
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGCTGGCATCGAATGTGATTCG
Found at i:36041714 original size:47 final size:47
Alignment explanation
Indices: 36041636--36042197 Score: 800
Period size: 47 Copynumber: 11.6 Consensus size: 47
36041626 CCCTTCGGGA
* * * * * * *
36041636 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36041683 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36041730 CTTATCACATATATACACTTTCACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--A---T---ACACTTTCACATTCATCACATCGGCCATTAGGC
36041787 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36041834 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36041883 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36041930 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36041979 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36042026 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042073 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36042122 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGG
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36042171 ATTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36042198 TATTCAAATA
Statistics
Matches: 472, Mismatches: 27, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
47 236 0.50
49 187 0.40
50 1 0.00
51 1 0.00
53 1 0.00
54 1 0.00
55 4 0.01
57 41 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36041876 original size:96 final size:96
Alignment explanation
Indices: 36041754--36042197 Score: 775
Period size: 96 Copynumber: 4.6 Consensus size: 96
36041744 ACACTTTCAC
36041754 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
36041819 CATCGGCCATTAGGCCTTATCACATATATAT
66 CATCGGCCATTAGGCCTTATCACATATATAT
* * * *
36041850 ACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATTACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
36041915 CATCGGCCATTAGGCCTTATCACATATATAT
66 CATCGGCCATTAGGCCTTATCACATATATAT
*
36041946 ACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
* *
36042011 CATCGGCTATTAGGCCTTATTAC--ATATAT
66 CATCGGCCATTAGGCCTTATCACATATATAT
36042040 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
36042105 CACATCGGCCATTAGGCCTTATCACATATATAT
64 CACATCGGCCATTAGGCCTTATCACATATATAT
**
36042138 ACACTTTCACATTCATCACATCGGCCATTAGGGATTATCACATATATACACTTTCACATT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
36042198 TATTCAAATA
Statistics
Matches: 328, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 46 0.14
96 237 0.72
98 45 0.14
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATAT
Found at i:36047312 original size:38 final size:40
Alignment explanation
Indices: 36047221--36047312 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
36047211 TGGTACCTTT
* *
36047221 TGGTGTGTAGGG-TTGGATGAGTTGATTATATCCCCATACT
1 TGGTGTGTAGGGTTTGGATGAGTCGATTATATCCCCA-ACA
* *
36047261 TGGTGTGTAGGGTTTGG-TGGGTCGATTCTATCCCC-ACA
1 TGGTGTGTAGGGTTTGGATGAGTCGATTATATCCCCAACA
*
36047299 TGGTGTGTTGGGTT
1 TGGTGTGTAGGGTT
36047313 GGTCGAAGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 15 0.33
40 27 0.59
41 4 0.09
ACGTcount: A:0.14, C:0.13, G:0.35, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGTTTGGATGAGTCGATTATATCCCCAACA
Found at i:36058469 original size:40 final size:39
Alignment explanation
Indices: 36058414--36058508 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 39
36058404 ACGGTACCTT
* * *
36058414 TTGGTCTGTAGGGTTGGATGGGTTGATTATATCCGCATA
1 TTGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
* *
36058453 CTTGGTGTGTAGGGTTGGGTGGGTCGATTCTATCCCCATA
1 -TTGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
*
36058493 -TGGTGTGTTGGGTTGG
1 TTGGTGTGTAGGGTTGG
36058509 TCGGAGATGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
38 15 0.31
40 34 0.69
ACGTcount: A:0.13, C:0.12, G:0.38, T:0.38
Consensus pattern (39 bp):
TTGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
Found at i:36064724 original size:29 final size:29
Alignment explanation
Indices: 36064692--36064803 Score: 131
Period size: 29 Copynumber: 3.9 Consensus size: 29
36064682 TCACTTAAAG
*
36064692 ATGATTTGGGCCTAATGGGCCATATGAAT
1 ATGAATTGGGCCTAATGGGCCATATGAAT
* *
36064721 ATGAATTGCGCCTGATGGGCCATATGAAT
1 ATGAATTGGGCCTAATGGGCCATATGAAT
* *
36064750 GTGAATTGAGCCTAATGGGCCATAT-AA-
1 ATGAATTGGGCCTAATGGGCCATATGAAT
*
36064777 ATGAGATTGGGCC-AAGTGGGACATATG
1 ATGA-ATTGGGCCTAA-TGGGCCATATG
36064804 TATGTATGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.07
28 18 0.25
29 48 0.68
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
ATGAATTGGGCCTAATGGGCCATATGAAT
Found at i:36065880 original size:17 final size:18
Alignment explanation
Indices: 36065848--36065881 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36065838 TTTAAGAAGT
36065848 GTTTTCAATGAAAACACG
1 GTTTTCAATGAAAACACG
*
36065866 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
36065882 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACG
Found at i:36071993 original size:16 final size:16
Alignment explanation
Indices: 36071960--36072002 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
36071950 GTAGATCGGC
*
36071960 AAAAGCTGAAATATCG
1 AAAAGCTGAAATACCG
* *
36071976 AAAAGTTGAAATGCCG
1 AAAAGCTGAAATACCG
*
36071992 AAAAGCCGAAA
1 AAAAGCTGAAA
36072003 GTTTGGCTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:36075203 original size:47 final size:47
Alignment explanation
Indices: 36075144--36075953 Score: 1350
Period size: 47 Copynumber: 16.9 Consensus size: 47
36075134 TAGTATGGCG
36075144 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
36075191 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
36075240 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
36075287 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
36075336 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
36075383 TAATGGCAGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
36075432 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
36075479 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
36075526 CAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
36075575 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
36075624 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
36075671 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTAGTAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-A-TAAGGCC
36075720 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
36075769 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
36075816 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
36075863 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
36075910 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36075954 TCCCGAAGGG
Statistics
Matches: 725, Mismatches: 26, Indels: 24
0.94 0.03 0.03
Matches are distributed among these distances:
47 411 0.57
48 1 0.00
49 303 0.42
50 1 0.00
51 9 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:36075308 original size:96 final size:96
Alignment explanation
Indices: 36075144--36075953 Score: 1391
Period size: 96 Copynumber: 8.5 Consensus size: 96
36075134 TAGTATGGCG
36075144 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36075209 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
36075240 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36075305 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* *
36075336 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36075401 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
36075432 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36075497 ATGTGAAAGTG--TATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* *
36075526 CAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
36075591 GAATGTGAAAGTGTATATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATATGTGATAAGGCC
*
36075624 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36075689 ATGTGAAAGTGTATATATATGT-AGTAAGGCC
66 ATGTGAAAGTGTATATATATGTGA-TAAGGCC
36075720 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
36075785 GAATGTGAAAGTG--TATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATATGTGATAAGGCC
36075816 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
36075881 ATATGAAAGTG--TATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * * *
36075910 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36075954 TCCCGAAGGG
Statistics
Matches: 687, Mismatches: 19, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
94 146 0.21
95 1 0.00
96 447 0.65
97 1 0.00
98 92 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:36076128 original size:37 final size:37
Alignment explanation
Indices: 36076072--36076150 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36076062 CCGAGCTCTA
* * *
36076072 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36076109 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36076146 AAGAC
1 AAGAC
36076151 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36078708 original size:4 final size:4
Alignment explanation
Indices: 36078699--36078747 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
36078689 TCTTAAAAAA
36078699 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
36078747 A
1 A
36078748 TTGGTAGTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:36080769 original size:28 final size:29
Alignment explanation
Indices: 36080733--36080788 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
36080723 ATACATATGA
*
36080733 CCCTCAACTTTT-CATTATTCACAATTTT
1 CCCTAAACTTTTACATTATTCACAATTTT
*
36080761 CCCTAAACTTTTACATTTTTCACAATTT
1 CCCTAAACTTTTACATTATTCACAATTT
36080789 AGTCCTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (29 bp):
CCCTAAACTTTTACATTATTCACAATTTT
Found at i:36082777 original size:19 final size:20
Alignment explanation
Indices: 36082736--36082777 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
36082726 CCTATAATAT
* *
36082736 ACTCTGGTGCCCTATTATGC
1 ACTCTAGTGACCTATTATGC
36082756 ACTCTAGTGACCTATT-TGC
1 ACTCTAGTGACCTATTATGC
36082775 ACT
1 ACT
36082778 TTGATGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (20 bp):
ACTCTAGTGACCTATTATGC
Found at i:36086415 original size:27 final size:27
Alignment explanation
Indices: 36086355--36086433 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
36086345 ATCTCAGTTC
* * *
36086355 GTAAAATTACCAAAATACCCC-G-ATTT
1 GTAAAATTATCGAAATACCCCTGTA-GT
* * *
36086381 GTAAAATTATCGGATTACCCTTGTAGT
1 GTAAAATTATCGAAATACCCCTGTAGT
36086408 GTAAAATTATCGAAATACCCCTGTAG
1 GTAAAATTATCGAAATACCCCTGTAG
36086434 GGTAGAATGA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
26 16 0.38
27 25 0.60
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCCTGTAGT
Found at i:36087827 original size:17 final size:18
Alignment explanation
Indices: 36087805--36087847 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
36087795 TTTTACTCAA
36087805 GTTTTCAAAT-AAGAAGG
1 GTTTTCAAATAAAGAAGG
*
36087822 GTTTTC-AATAAAGTAGG
1 GTTTTCAAATAAAGAAGG
36087839 GTTTTCAAA
1 GTTTTCAAA
36087848 AAACACTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 3 0.13
17 18 0.78
18 2 0.09
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (18 bp):
GTTTTCAAATAAAGAAGG
Found at i:36099963 original size:27 final size:26
Alignment explanation
Indices: 36099919--36099970 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36099909 CTCGCTGCAA
*
36099919 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36099946 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36099971 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36105856 original size:27 final size:27
Alignment explanation
Indices: 36105818--36106040 Score: 232
Period size: 27 Copynumber: 8.2 Consensus size: 27
36105808 GGGACGAAAT
** *
36105818 AATGACCGAAATACCCTTATAAGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
36105845 AATGACCAAAATACCCCCATAGGGAAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
36105872 AATGACTGAAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
36105899 AATGACCAAAATACGCCCATGGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
36105926 AATGACCGAAATACCCTCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
*
36105953 AATGACCGAAATACCCCCATAGGGGTCA
1 AATGACCGAAATACCCCCATA-GGGTAA
* * * *
36105981 AATGACTGTAATACCCTCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
* ** *
36106008 AATGA-CTATAATACCCCTGTACGGTAA
1 AATGACCGA-AATACCCCCATAGGGTAA
36106035 AATGAC
1 AATGAC
36106041 TGTATTACCC
Statistics
Matches: 158, Mismatches: 35, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
27 136 0.86
28 22 0.14
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAA
Found at i:36105900 original size:54 final size:54
Alignment explanation
Indices: 36105818--36106051 Score: 274
Period size: 54 Copynumber: 4.3 Consensus size: 54
36105808 GGGACGAAAT
* * *
36105818 AATGACCGAAATACCCTTATAAGG-TAAAATGACCAAAATACCCCCATAGGGAAA
1 AATGACTGAAATACCCTCAT-AGGATAAAATGACCAAAATACCCCCATAGGGTAA
* * *
36105872 AATGACTGAAATACCC-CTATAGGGTAAAATGACCAAAATACGCCCATGGGGTAA
1 AATGACTGAAATACCCTC-ATAGGATAAAATGACCAAAATACCCCCATAGGGTAA
* * *
36105926 AATGACCGAAATACCCTCATAGGATAAAATGACCGAAATACCCCCATAGGGGTCA
1 AATGACTGAAATACCCTCATAGGATAAAATGACCAAAATACCCCCATA-GGGTAA
* * * ** *
36105981 AATGACTGTAATACCCTCATAGGATAAAATGACTATAATACCCCTGTACGGTAA
1 AATGACTGAAATACCCTCATAGGATAAAATGACCAAAATACCCCCATAGGGTAA
* *
36106035 AATGACTGTATTACCCT
1 AATGACTGAAATACCCT
36106052 TGTAAGGCAA
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
53 3 0.02
54 105 0.68
55 47 0.30
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.21
Consensus pattern (54 bp):
AATGACTGAAATACCCTCATAGGATAAAATGACCAAAATACCCCCATAGGGTAA
Found at i:36106041 original size:27 final size:26
Alignment explanation
Indices: 36105870--36106066 Score: 103
Period size: 27 Copynumber: 7.3 Consensus size: 26
36105860 CCCATAGGGA
* *
36105870 AAAATGACTGAAATACCCCTATAGGGT
1 AAAATGACTGTAATACCCCTGTA-GGT
*** *
36105897 AAAATGACCAAAATACGCCCATG-GGGT
1 AAAATGACTGTAATAC-CCC-TGTAGGT
* * *
36105924 AAAATGACCGAAATA-CCCTCATAGGAT
1 AAAATGACTGTAATACCCCT-GTAGG-T
* * **
36105951 AAAATGACCGAAATACCCCCATAGGGGT
1 AAAATGACTGTAATACCCCTGTA--GGT
* *
36105979 CAAATGACTGTAATA-CCCTCATAGGAT
1 AAAATGACTGTAATACCCCT-GTAGG-T
*
36106006 AAAATGACTATAATACCCCTGTACGGT
1 AAAATGACTGTAATACCCCTGTA-GGT
* * *
36106033 AAAATGACTGTATTACCCTTGTAAGGC
1 AAAATGACTGTAATACCCCTGT-AGGT
36106060 AAAATGA
1 AAAATGA
36106067 TTGTTTTGCC
Statistics
Matches: 138, Mismatches: 19, Indels: 26
0.75 0.10 0.14
Matches are distributed among these distances:
24 1 0.01
25 3 0.02
26 4 0.03
27 98 0.71
28 29 0.21
29 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (26 bp):
AAAATGACTGTAATACCCCTGTAGGT
Found at i:36106191 original size:27 final size:27
Alignment explanation
Indices: 36106030--36106192 Score: 139
Period size: 27 Copynumber: 6.0 Consensus size: 27
36106020 ACCCCTGTAC
* * * **
36106030 GGTAAAATGACTGTATTACCCTTGTAA
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
36106057 GGCAAAATGATTGTTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** *
36106084 ATTAAAATGAC-GATTTTGCCCTTATAT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * *
36106111 GGTAAAATGACAGTTTTGCGCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
36106138 GGTAAAATAACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** *
36106165 GGTAGGATGACTGTTTTGCCCCTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
36106192 G
1 G
36106193 ATGTATGTTT
Statistics
Matches: 109, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:36106488 original size:23 final size:23
Alignment explanation
Indices: 36106458--36106514 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
36106448 ATATCTCCAC
*
36106458 ATGGAGTGTAGGGTTGGACGGAG
1 ATGGAGTGTAGGGTTGGACAGAG
*
36106481 ATGGAGTGTAAGGTTGGACAGAG
1 ATGGAGTGTAGGGTTGGACAGAG
36106504 ATGGAGTGTAG
1 ATGGAGTGTAG
36106515 AGGCTGGATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.04, G:0.47, T:0.23
Consensus pattern (23 bp):
ATGGAGTGTAGGGTTGGACAGAG
Found at i:36110742 original size:6 final size:6
Alignment explanation
Indices: 36110712--36110836 Score: 69
Period size: 6 Copynumber: 20.3 Consensus size: 6
36110702 AAGAAACATT
* * *
36110712 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
36110761 ATCAGA ATCAAA ATTAGGTG AT-AGA ATTAGA ATCAAA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
36110810 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
36110837 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 6 0.07
6 72 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:36110766 original size:25 final size:25
Alignment explanation
Indices: 36110733--36110802 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
36110723 AATCAAAATG
*
36110733 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAAAATCAGGTGAC
* *
36110758 AGAATCAGAATCAAAATTAGGTGAT
1 AGAATCAGAATCAAAATCAGGTGAC
*
36110783 AGAATTAGAATCAAAATCAG
1 AGAATCAGAATCAAAATCAG
36110803 AATCAGTATC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAAAATCAGGTGAC
Found at i:36110770 original size:31 final size:31
Alignment explanation
Indices: 36110735--36110836 Score: 93
Period size: 31 Copynumber: 3.3 Consensus size: 31
36110725 TCAAAATGAG
* *
36110735 AATCAGAATCAGAATCAGGTGACAGAATCAG
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
* * * *
36110766 AATCAAAATTAGGTGAT-A-G-AATTAGAATCAA
1 AATCAGAATCA-G-AATCAGGTAA-CAGAATCAA
*
36110797 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
36110828 AATCAGAAT
1 AATCAGAAT
36110837 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
29 2 0.04
30 3 0.05
31 44 0.80
32 4 0.07
33 2 0.04
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:36111107 original size:27 final size:26
Alignment explanation
Indices: 36111059--36111110 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36111049 GCGAGGCTAC
*
36111059 CAGATATTGTGATGAAGTCACCAGAA
1 CAGATATTGTGATGAAGCCACCAGAA
* *
36111085 CAGATATATGTGGTGAGGCCACCAGA
1 CAGATAT-TGTGATGAAGCCACCAGA
36111111 TTACAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGATGAAGCCACCAGAA
Found at i:36111376 original size:27 final size:27
Alignment explanation
Indices: 36111346--36111664 Score: 390
Period size: 27 Copynumber: 11.8 Consensus size: 27
36111336 AACACCCTAG
* * *
36111346 GGGTAAAATAGAAATTTTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
36111373 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
36111400 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
36111427 GGGTAAAACAGTAATTCTGTCAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * **
36111454 AGGTAAAATGGTAATTCTAAAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
36111481 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
36111508 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
36111535 GGGTAAAATAGTAATCCTGTCAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
36111562 GGGTAAAACT-GTAATTTTGTAAATCGA
1 GGGTAAAA-TAGTAATTCTGTAAATCGA
*
36111589 GGGTAAAAT-GATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTCTGTAAATCGA
* *
36111616 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
36111643 GGGTAAAACAGTAATTTTGTAA
1 GGGTAAAATAGTAATTCTGTAA
36111665 TTTAAGGATA
Statistics
Matches: 252, Mismatches: 37, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 248 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTGTAAATCGA
Found at i:36111683 original size:81 final size:82
Alignment explanation
Indices: 36111346--36111664 Score: 430
Period size: 81 Copynumber: 3.9 Consensus size: 82
36111336 AACACCCTAG
* * * * * *
36111346 GGGTAAAAT-AGAAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACA
1 GGGTAAAATGAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
36111410 GTAATTTTGTAAATCGA
66 GTAATTTTGTAAATCGA
* * * * * * *
36111427 GGGTAAAA-CAGTAATTCTGTCAATCAAAGGTAAAATGGTAATTCTAAAAATCGAGGGTAAAATA
1 GGGTAAAATGAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
*
36111491 GTAATTTTGTAAATTGA
66 GTAATTTTGTAAATCGA
* * * *
36111508 GGGTAAAAT-AGTAATTCTGTAAATCGAGGGTAAAATAGTAATCCTGTCAATCGAGGGTAAAACT
1 GGGTAAAATGAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
36111572 GTAATTTTGTAAATCGA
66 GTAATTTTGTAAATCGA
* *
36111589 GGGTAAAATGA-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
1 GGGTAAAATGAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
36111653 GTAATTTTGTAA
66 GTAATTTTGTAA
36111665 TTTAAGGATA
Statistics
Matches: 207, Mismatches: 28, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
81 206 1.00
82 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (82 bp):
GGGTAAAATGAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
GTAATTTTGTAAATCGA
Found at i:36111743 original size:54 final size:52
Alignment explanation
Indices: 36111685--36111820 Score: 119
Period size: 54 Copynumber: 2.5 Consensus size: 52
36111675 CTTTGATAAC
* * * *
36111685 TTTACAAGTTGATGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGGAGT
1 TTTACAA-TTGA-GGTATTTCAGTAATTTTACAAACCGAGGGTACTTTGGGAAT
* ** * * *
36111739 TTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAAT
1 TTTAC-AATTGAGG-TATTTCAGTAATTTTACAAACCGAGGGTACTTTGGGAAT
* *
36111793 TTTACAACTGGGGGTATTTCAGTAATTT
1 TTTACAA-TTGAGGTATTTCAGTAATTT
36111821 GGTAAACTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
53 16 0.25
54 47 0.72
55 2 0.03
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (52 bp):
TTTACAATTGAGGTATTTCAGTAATTTTACAAACCGAGGGTACTTTGGGAAT
Found at i:36111817 original size:26 final size:26
Alignment explanation
Indices: 36111698--36111820 Score: 86
Period size: 27 Copynumber: 4.6 Consensus size: 26
36111688 ACAAGTTGAT
* *
36111698 GGTATTTCAGTAATTTTGCAAACTGAG
1 GGTATTTCGGTAATTTTAC-AACTGAG
* * * *
36111725 GGTATTTTGGGAGTTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAACT-GAG
* * * * *
36111752 GATATTTGGGTAATTTTATAAACCGGG
1 GGTATTTCGGTAATTTTA-CAACTGAG
*
36111779 GGTACTTT-GGTAATTTTACAACTGGG
1 GGTA-TTTCGGTAATTTTACAACTGAG
*
36111805 GGTATTTCAGTAATTT
1 GGTATTTCGGTAATTT
36111821 GGTAAACTAA
Statistics
Matches: 74, Mismatches: 18, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
25 3 0.04
26 20 0.27
27 46 0.62
28 5 0.07
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAACTGAG
Found at i:36113900 original size:31 final size:31
Alignment explanation
Indices: 36113865--36113937 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
36113855 ATCAGGTGAC
* *
36113865 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATT
*
36113896 AGAATCAGAATCAGTATCAGGTAACAGAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATT
*
36113927 AAAATCAGAAT
1 AGAATCAGAAT
36113938 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATT
Found at i:36113925 original size:25 final size:25
Alignment explanation
Indices: 36113842--36113909 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
36113832 TCAAAATGAA
*
36113842 AATCAAAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGGTGACAG
*
36113867 AATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGGTGACAG
*
36113892 AATTAGAATCAGAATCAG
1 AATCAGAATCAGAATCAG
36113910 TATCAGGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTGACAG
Found at i:36114104 original size:27 final size:26
Alignment explanation
Indices: 36114056--36114115 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
36114046 GCGAGGCTGC
*
36114056 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
36114083 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
36114109 CAAATAT
1 CAGATAT
36114116 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36114212 original size:27 final size:26
Alignment explanation
Indices: 36114164--36114215 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36114154 GCGAAGCTGC
*
36114164 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36114190 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36114216 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36114482 original size:27 final size:27
Alignment explanation
Indices: 36114452--36114806 Score: 417
Period size: 27 Copynumber: 13.1 Consensus size: 27
36114442 ACACCATAGC
** * *
36114452 GGTAAAATGGTAATTTTATAAATCGAT
1 GGTAAAACAGTAATTTTGTAAATCGAG
* *
36114479 GGTAAAACGGTAATTTTGTAAATAGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
* *
36114506 GGTAAAATAATAATTTTGTAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
* *
36114533 GGTAAAATAATAATTTTGTAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
* * * *
36114560 GGTAAAATAGTAATTCTGTCAACCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
*
36114587 GGTAAAAC-GATAATTCTGTAAATCGAG
1 GGTAAAACAG-TAATTTTGTAAATCGAG
* *
36114614 GGTAAAACAATAATTTTGTAAATTGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
* *
36114641 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
* * * *
36114668 GGTAAAAAAGTAATTCTGTCAATCGTG
1 GGTAAAACAGTAATTTTGTAAATCGAG
** *
36114695 GGTAAAATGGTAATTTTGTAAATCAAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
36114722 GGTAAAAC-GATAATTTTGTAAATCGAG
1 GGTAAAACAG-TAATTTTGTAAATCGAG
*
36114749 GGTAAAACAGTAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
* *
36114776 GGTAAAACAGTAATTTTGTAATTTGAG
1 GGTAAAACAGTAATTTTGTAAATCGAG
36114803 GGTA
1 GGTA
36114807 CTTTGATAAT
Statistics
Matches: 286, Mismatches: 38, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 283 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GGTAAAACAGTAATTTTGTAAATCGAG
Found at i:36114841 original size:54 final size:53
Alignment explanation
Indices: 36114783--36114960 Score: 169
Period size: 54 Copynumber: 3.3 Consensus size: 53
36114773 GAGGGTAAAA
** * *
36114783 CAGTAATTTTGTAATTTGAGGGTACTTTGATAATTTTACAAGTCGATGGTATTT
1 CAGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGA-GGTATTT
* * * *
36114837 CAGTAATTTTGCAAACTGATGCTA-TTTCGGTAGTTTTACAAATCGAGGATATTT
1 CAGTAATTTTGTAAACTGAGGGTACTTT-GGTAATTTTACAAATCGAGG-TATTT
** * * * * * *
36114891 GGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACTAGGGGTATTT
1 CAGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAGGTATTT
*
36114944 CAGTAATTTGGTAAACT
1 CAGTAATTTTGTAAACT
36114961 AAAGTATTCT
Statistics
Matches: 96, Mismatches: 25, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
53 22 0.23
54 71 0.74
55 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (53 bp):
CAGTAATTTTGTAAACTGAGGGTACTTTGGTAATTTTACAAATCGAGGTATTT
Found at i:36114889 original size:27 final size:26
Alignment explanation
Indices: 36114813--36114952 Score: 95
Period size: 27 Copynumber: 5.2 Consensus size: 26
36114803 GGTACTTTGA
* *
36114813 TAATTTTACAAGTCGATGGTATTTCAG
1 TAATTTTACAAATCGA-GGTATTTCGG
* *
36114840 TAATTTTGCAAA-CTGATGCTATTTCGG
1 TAATTTTACAAATC-GA-GGTATTTCGG
* *
36114867 TAGTTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGG-TATTTCGG
* * *
36114894 TAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTACAAATC-GAGGTA-TTTCGG
* * * *
36114921 TAATTTTACAACTAGGGGTATTTCAG
1 TAATTTTACAAATCGAGGTATTTCGG
36114947 TAATTT
1 TAATTT
36114953 GGTAAACTAA
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
25 3 0.03
26 15 0.17
27 65 0.72
28 7 0.08
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (26 bp):
TAATTTTACAAATCGAGGTATTTCGG
Found at i:36117267 original size:43 final size:43
Alignment explanation
Indices: 36117218--36117373 Score: 192
Period size: 43 Copynumber: 3.7 Consensus size: 43
36117208 ATGTGTTCTC
* *
36117218 GTGTAAGACCACGTCTGGGACGTTGGCATCGATGTGTGATTAT
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAT
* * * * *
36117261 GTGTAAGACCATGTCTAGGACATCGGCATC-ATATTTGATTCT
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAT
* *
36117303 -TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTAT
*
36117345 ATGTAAGACCACGTCTGGGACATTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
36117374 TGTATGATAT
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
41 24 0.26
42 18 0.19
43 51 0.54
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAT
Found at i:36117366 original size:84 final size:84
Alignment explanation
Indices: 36117219--36117373 Score: 224
Period size: 84 Copynumber: 1.8 Consensus size: 84
36117209 TGTGTTCTCG
* ** *
36117219 TGTAAGACCACGTCTGGGACGTTGGCATCGATGTGTGATTATGTGTAAGACCATGTCTAGGACAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGACAT
36117284 CGGCATCATATTTGATTCT
66 CGGCATCATATTTGATTCT
*
36117303 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGAC
*
36117366 ATTGGCAT
64 ATCGGCAT
36117374 TGTATGATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
83 1 0.02
84 61 0.97
85 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (84 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGACAT
CGGCATCATATTTGATTCT
Found at i:36124062 original size:14 final size:15
Alignment explanation
Indices: 36124029--36124064 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
36124019 GGTTTCGGGA
*
36124029 TCACACATATAAATT
1 TCACAGATATAAATT
36124044 TCACAGATATAAA-T
1 TCACAGATATAAATT
36124058 TCACAGA
1 TCACAGA
36124065 AAATTTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (15 bp):
TCACAGATATAAATT
Found at i:36124928 original size:43 final size:42
Alignment explanation
Indices: 36124762--36124929 Score: 117
Period size: 43 Copynumber: 4.0 Consensus size: 42
36124752 GATTCTCGAT
* * *
36124762 ATATGTG-TTATCATGTAAGACGATGTCTAGGATGTTGGCATC
1 ATATGTGATTA-CGTGTAAGACCACGTCTAGGATGTTGGCATC
* * * * * ** *
36124804 TATGTGTGATTATGTGTAAGACCATGTTTGGGACATCGGCATC
1 -ATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATC
* * * * *
36124847 ATATTTGAAT-CATGTAAGACCCCGTCTAGGACAG-TGGCATC
1 ATATGTGATTACGTGTAAGACCACGTCTAGGA-TGTTGGCATC
* *
36124888 GATATGTGATTACGTGCAAGACCACGTCTGGGATGTTGGCAT
1 -ATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCAT
36124930 TGTATGATAT
Statistics
Matches: 92, Mismatches: 28, Indels: 10
0.71 0.22 0.08
Matches are distributed among these distances:
41 21 0.23
42 16 0.17
43 52 0.57
44 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
ATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATC
Found at i:36126692 original size:27 final size:27
Alignment explanation
Indices: 36126658--36126831 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
36126648 TAAATTGTAC
36126658 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36126685 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36126711 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36126739 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36126767 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36126794 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36126821 AGCACTGAGTG
1 AGCACTAAGTG
36126832 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36126772 original size:82 final size:81
Alignment explanation
Indices: 36126659--36126814 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36126649 AAATTGTACA
* *
36126659 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36126723 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36126740 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36126805 TGCGAGTTGA
65 TGCGAATTGA
36126815 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36131932 original size:49 final size:50
Alignment explanation
Indices: 36131793--36131933 Score: 185
Period size: 51 Copynumber: 2.8 Consensus size: 50
36131783 TCTATTGTGA
* *
36131793 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCAATAACTTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAAC-TT
* * * * **
36131844 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAACTT
*
36131893 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATATGTACC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
36131934 AGAGAGCTTC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 38 0.49
51 39 0.51
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (50 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAACTT
Found at i:36134680 original size:16 final size:15
Alignment explanation
Indices: 36134642--36134680 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
36134632 TGGATTCTCG
*
36134642 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
36134657 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
36134672 TATTCTTGG
1 TA-TCTTGG
36134681 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:36136556 original size:27 final size:27
Alignment explanation
Indices: 36136479--36136620 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 27
36136469 TTAGTTTACC
* * ** *
36136479 AAATCACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTCATTTGCA
* * * *
36136506 AAATTATCAAAATGCCCTTCATTTACA
1 AAATTACCAAAATACCCCTCATTTGCA
* **
36136533 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTCATTTGCA
*
36136560 AAATTACCGAAATA-CCCTCAGTTTGCA
1 AAATTACCAAAATACCCCTCA-TTTGCA
** **
36136587 AAATTACTGAAATA-CCCTCAATTTTTA
1 AAATTACCAAAATACCCCTC-ATTTGCA
36136614 AAATTAC
1 AAATTAC
36136621 TGAAATACTC
Statistics
Matches: 90, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
26 5 0.06
27 84 0.93
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTCATTTGCA
Found at i:36136558 original size:54 final size:54
Alignment explanation
Indices: 36136471--36136664 Score: 151
Period size: 54 Copynumber: 3.6 Consensus size: 54
36136461 AGAATACTTT
* * * * * *
36136471 AGTTTACCAAATCACCAAAATACTCCTGGTTTGTAAAATTATCAAAATGCCCTTC
1 AGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-TC
* *
36136526 A-TTTACAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTC
1 AGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTC
* ** * * ** *
36136579 AGTTTGCAAAATTACTGAAATA-CCCTCAATTTTTAAAATTACTGAAATACTCTC
1 AGTTTACAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTC
** * * *
36136633 -GACTAGTAAAATTACCAAAGTACCCCCGATTT
1 AGTTTA-CAAAATTACCAAAATACCCCTGATTT
36136665 ACAGAATTAC
Statistics
Matches: 110, Mismatches: 25, Indels: 9
0.76 0.17 0.06
Matches are distributed among these distances:
53 9 0.08
54 97 0.88
55 4 0.04
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
AGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTC
Found at i:36136621 original size:27 final size:27
Alignment explanation
Indices: 36136560--36136628 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
36136550 CTGATTTGTG
* *
36136560 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCAATTTGCA
**
36136587 AAATTACTGAAATACCCTCAATTTTTA
1 AAATTACTGAAATACCCTCAATTTGCA
36136614 AAATTACTGAAATAC
1 AAATTACTGAAATAC
36136629 TCTCGACTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGCA
Found at i:36136642 original size:27 final size:27
Alignment explanation
Indices: 36136560--36136647 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 27
36136550 CTGATTTGTG
* ** * *
36136560 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCAACTAGTA
* **
36136587 AAATTACTGAAATACCCTCAATTTTTA
1 AAATTACTGAAATACCCTCAACTAGTA
* *
36136614 AAATTACTGAAATACTCTCGACTAGTA
1 AAATTACTGAAATACCCTCAACTAGTA
36136641 AAATTAC
1 AAATTAC
36136648 CAAAGTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAACTAGTA
Found at i:36136726 original size:27 final size:27
Alignment explanation
Indices: 36136703--36136974 Score: 339
Period size: 27 Copynumber: 10.1 Consensus size: 27
36136693 CAAAATTATT
* *
36136703 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
36136730 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
36136757 GAAATAACCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
36136784 AAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
36136811 -AGAATACCCTTGTAGGGTAGAAATACC
1 GA-AATACCCCTGTAGGGTAGAATTACC
* *
36136838 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
36136865 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
36136892 AAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
**
36136919 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
36136946 AAAATACCCCTATAGGGTAGGACTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
36136973 GA
1 GA
36136975 TTTACCCATG
Statistics
Matches: 211, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.00
27 209 0.99
28 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:36137671 original size:27 final size:26
Alignment explanation
Indices: 36137627--36137678 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36137617 CTCGCTGCAA
*
36137627 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36137654 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36137679 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36140585 original size:50 final size:49
Alignment explanation
Indices: 36140469--36140653 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 49
36140459 AGGTCGCATA
* *** *
36140469 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCTCTAACTTTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA--TTGGTCACGTG
* * **
36140520 TGTTGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACGTG
* * * *
36140570 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACGTG
*
36140619 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
36140654 GAGCTTTGGC
Statistics
Matches: 113, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 41 0.36
50 42 0.37
51 30 0.27
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACGTG
Found at i:36144272 original size:24 final size:25
Alignment explanation
Indices: 36144245--36144296 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
36144235 GCCTAGCCTC
36144245 TTTTAATAA-CTGGGGCAAAGCCCT
1 TTTTAATAATCTGGGGCAAAGCCCT
**
36144269 TTTTGGTAATCTGGGGCAAAGCCCT
1 TTTTAATAATCTGGGGCAAAGCCCT
36144294 TTT
1 TTT
36144297 CGCACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (25 bp):
TTTTAATAATCTGGGGCAAAGCCCT
Found at i:36144749 original size:27 final size:27
Alignment explanation
Indices: 36144491--36144738 Score: 289
Period size: 27 Copynumber: 9.2 Consensus size: 27
36144481 AACACCCTAG
* * *
36144491 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
36144518 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
36144545 GGGTAACACGATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * * * **
36144572 GAGTACAACGGTAATTCTATAAATTAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
36144599 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
36144626 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
36144653 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
36144680 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
36144707 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
36144734 GGGTA
1 GGGTA
36144739 CTTTGGTAAT
Statistics
Matches: 190, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 190 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTGTAAATCGA
Found at i:36144749 original size:54 final size:54
Alignment explanation
Indices: 36144491--36144738 Score: 345
Period size: 54 Copynumber: 4.6 Consensus size: 54
36144481 AACACCCTAG
*
36144491 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
* * * * * **
36144545 GGGTAACA-CGATAATTCTGTAAATCGAGAGTACAACGGTAATTCTATAAATTAA
1 GGGTAAAATAG-TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
*
36144599 GGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
* ** *
36144653 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
* *
36144707 GGGTAAAATAGTAATTCTGTAAATTGAGGGTA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTA
36144739 CTTTGGTAAT
Statistics
Matches: 168, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.01
54 166 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
Found at i:36152730 original size:32 final size:31
Alignment explanation
Indices: 36152678--36152774 Score: 90
Period size: 34 Copynumber: 3.0 Consensus size: 31
36152668 CTAATTTCAT
* *
36152678 ATTGTACTGATTCTGTAATGGGCTTAGGCCC
1 ATTGTACTGATTCTGAAATGGGCTCAGGCCC
36152709 ATTGATACTG-TTACTGAAATGGGCTCAGGCTCAC
1 ATTG-TACTGATT-CTGAAATGGGCTCAGGC-C-C
* *
36152743 ACTAT-TTCTGATTCTGAAATGGGCTAAGGCCC
1 A-T-TGTACTGATTCTGAAATGGGCTCAGGCCC
36152775 TAATTGAAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
31 6 0.11
32 21 0.38
33 2 0.04
34 22 0.40
35 3 0.05
36 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (31 bp):
ATTGTACTGATTCTGAAATGGGCTCAGGCCC
Found at i:36157569 original size:35 final size:35
Alignment explanation
Indices: 36157523--36157711 Score: 236
Period size: 35 Copynumber: 5.3 Consensus size: 35
36157513 TACTCTCTAT
*
36157523 TTGGCGTGTTTCGGTTAGATTAGCTCTTATGAGCA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
* *
36157558 TTGGCATGTTTCGGTTGGATTAGCTCTTATGAGAA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
* *
36157593 TTGGCGTGTTTTGGTTGGATTAGCTCTTATGAGGA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
* * *
36157628 TTGGCATGTTACAGTTGGATTAGCTCTTATGAGCA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
* *
36157663 TTGGCGTGTTAT-GTTTGGATTGGCTCTTTTATGAGCA
1 TTGGCGTGTT-TCGGTTGGATTAGCTC--TTATGAGCA
*
36157700 TCTGGTGTGTTT
1 T-TGGCGTGTTT
36157712 GGGTGGTTTG
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
35 114 0.86
37 11 0.08
38 8 0.06
ACGTcount: A:0.16, C:0.12, G:0.30, T:0.42
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
Found at i:36158858 original size:31 final size:31
Alignment explanation
Indices: 36158823--36158885 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
36158813 CTTTAATATT
36158823 GCATGAATTGTATGTTTAATTATGTGAATGA
1 GCATGAATTGTATGTTTAATTATGTGAATGA
36158854 GCATGAATTGTATGTTTAATTATGTGAATGA
1 GCATGAATTGTATGTTTAATTATGTGAATGA
36158885 G
1 G
36158886 TATAACTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.24, T:0.41
Consensus pattern (31 bp):
GCATGAATTGTATGTTTAATTATGTGAATGA
Found at i:36159043 original size:43 final size:43
Alignment explanation
Indices: 36158982--36159069 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
36158972 TGTTACTAGG
*
36158982 GTTAGTATGTGTTATGTGATTATGTGATCTGAGTGCTGGTCTT
1 GTTAGTATGTGTTATGTGATTATGTGATCCGAGTGCTGGTCTT
36159025 GTTAGTATGTGTTATGTGATTATGTGATCCGAGTGCTGGTCTT
1 GTTAGTATGTGTTATGTGATTATGTGATCCGAGTGCTGGTCTT
36159068 GT
1 GT
36159070 ACGTCCTACC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.16, C:0.08, G:0.31, T:0.45
Consensus pattern (43 bp):
GTTAGTATGTGTTATGTGATTATGTGATCCGAGTGCTGGTCTT
Found at i:36159669 original size:18 final size:18
Alignment explanation
Indices: 36159646--36159682 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
36159636 ATTTTGAAAG
36159646 TATGACATCTATAGGGAC
1 TATGACATCTATAGGGAC
36159664 TATGACATCTATAGGGAC
1 TATGACATCTATAGGGAC
36159682 T
1 T
36159683 TGGTCATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (18 bp):
TATGACATCTATAGGGAC
Found at i:36168548 original size:27 final size:27
Alignment explanation
Indices: 36168518--36168655 Score: 172
Period size: 27 Copynumber: 5.1 Consensus size: 27
36168508 GGATAAGTTA
** *
36168518 TAGAATTACCAAAATACTCCTGT-GAGG
1 TAGAATTACTGAAATACCCCTGTAG-GG
*
36168545 TAGAATTACTGAAATACCCCTATAGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
*
36168572 TAGAATTACTGAAATACTCCTGTAAGGG
1 TAGAATTACTGAAATACCCCTGT-AGGG
*
36168600 -AGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
* *
36168626 TAAAATTACTAAAATACCCCTGTAGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
36168653 TAG
1 TAG
36168656 GACTACCGAT
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.04
27 87 0.91
28 5 0.05
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
TAGAATTACTGAAATACCCCTGTAGGG
Found at i:36168663 original size:54 final size:54
Alignment explanation
Indices: 36168521--36168690 Score: 200
Period size: 54 Copynumber: 3.1 Consensus size: 54
36168511 TAAGTTATAG
* * * *
36168521 AATTACCAAAATACTCCTGT-GAGGTAGAATTACTGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACTCCTGTAG-GGTAGAATTACCGAAATACCCCTGTAGGGTAA
*
36168575 AATTACTGAAATACTCCTGTAAGGG-AGAATTACCGAAATACCCCTGTAGGGTAA
1 AATTACTAAAATACTCCTGT-AGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
* * * ** *
36168629 AATTACTAAAATACCCCTGTAGGGTAGGACTACCGATTTACCCCTGGAGGGTAA
1 AATTACTAAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
*
36168683 AATGACTA
1 AATTACTA
36168691 TTTTACCCCT
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 4 0.04
54 93 0.93
55 2 0.02
56 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
AATTACTAAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
Found at i:36168709 original size:27 final size:26
Alignment explanation
Indices: 36168665--36168716 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36168655 GGACTACCGA
* *
36168665 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTCGAGCGT-AAATGACTAT
*
36168692 TTTACCCCTCGTGCGTAAATGACTA
1 TTTACCCCTCGAGCGTAAATGACTA
36168717 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
TTTACCCCTCGAGCGTAAATGACTAT
Found at i:36173795 original size:30 final size:30
Alignment explanation
Indices: 36173759--36173819 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36173749 TCCTTAACTC
36173759 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * * *
36173789 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
36173819 A
1 A
36173820 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:36192378 original size:39 final size:40
Alignment explanation
Indices: 36192333--36192556 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
36192323 GCTCCTCGTT
* * * *
36192333 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36192373 C-AATGCCTTCGGGACTTAACCCGGATTTAAT-ACTTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
* *
36192412 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36192452 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
36192491 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36192532 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36192557 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
38 4 0.03
39 63 0.40
40 77 0.49
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Done.