Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 113 of 332
Found at i:36506361 original size:50 final size:49
Alignment explanation
Indices: 36506283--36506470 Score: 209
Period size: 50 Copynumber: 3.8 Consensus size: 49
36506273 TTGTGAATAG
*
36506283 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-TCAAGTC
* * * *
36506333 ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGA-TC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTTCAAGTC
* * * * *
36506384 ACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGA-TGGTGAGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT--TCAAGTC
*
36506434 ACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
36506471 GGATTGTTGG
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 2 0.02
50 70 0.61
51 34 0.30
52 4 0.03
53 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTTCAAGTC
Found at i:36513769 original size:50 final size:49
Alignment explanation
Indices: 36513694--36513818 Score: 178
Period size: 50 Copynumber: 2.5 Consensus size: 49
36513684 TGAATACACG
* *
36513694 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTATT-AGTCGCA
* * * *
36513744 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTATTAGTCGCA
*
36513793 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
36513819 TGCGTATCAG
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
49 31 0.46
50 37 0.54
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTATTAGTCGCA
Found at i:36513814 original size:49 final size:50
Alignment explanation
Indices: 36513694--36513829 Score: 184
Period size: 49 Copynumber: 2.7 Consensus size: 50
36513684 TGAATACACG
* * *
36513694 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTATTAAGTCGCA
* * *
36513744 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTATTAAGTCGCA
* * *
36513793 TGTGTAGTACTAAGTGTAGGCTACTATGCGTATCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
36513830 TAGCTTCGGC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
49 39 0.51
50 37 0.49
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTATTAAGTCGCA
Found at i:36516211 original size:39 final size:40
Alignment explanation
Indices: 36516166--36516390 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
36516156 GCTCCTCGTT
* * * *
36516166 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36516206 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36516245 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
36516285 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
36516325 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36516366 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36516391 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36516259 original size:40 final size:38
Alignment explanation
Indices: 36516133--36516390 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 38
36516123 AAATCACGTA
* * *
36516133 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
36516172 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
36516211 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
36516251 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
* *
36516291 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
36516331 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
36516371 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
36516391 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.01
39 50 0.28
40 116 0.64
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:36516399 original size:41 final size:41
Alignment explanation
Indices: 36516322--36516399 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36516312 CTTGTATCTC
* * *
36516322 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36516363 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36516400 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36525568 original size:36 final size:36
Alignment explanation
Indices: 36525512--36525584 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
36525502 TACGAAGTCT
* * *
36525512 TACCCGGACATAATCTCCACACGAAGTTATCGGGTC
1 TACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
*
36525548 TACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
1 TACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
36525584 T
1 T
36525585 TTAGAGCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (36 bp):
TACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
Found at i:36525782 original size:47 final size:47
Alignment explanation
Indices: 36525704--36526123 Score: 659
Period size: 47 Copynumber: 8.9 Consensus size: 47
36525694 CCCTTCGGGA
* * * * * *
36525704 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36525751 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36525798 CTTATCACATATATACAC-TTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36525844 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36525891 CTTATCACATATATATACAC-TTCACATTCATCACATCGGTCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36525939 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36525988 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36526035 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36526082 CTTATCAC--ATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
36526124 CGCCATACTA
Statistics
Matches: 350, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
45 33 0.09
46 45 0.13
47 182 0.52
48 46 0.13
49 44 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36525999 original size:144 final size:141
Alignment explanation
Indices: 36525704--36526123 Score: 659
Period size: 144 Copynumber: 3.0 Consensus size: 141
36525694 CCCTTCGGGA
* * * * * * * *
36525704 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
36525769 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTCCCATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
36525833 GGCCATTAGGC
131 GGCCATTAGGC
36525844 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
36525909 AC-TTCACATTCATCACATCGGTCATTAGGCCCTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
36525973 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
36525988 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36526053 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
36526116 GGTCATTA
131 GGCCATTA
36526124 CGCCATACTA
Statistics
Matches: 259, Mismatches: 15, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
139 33 0.13
140 47 0.18
141 34 0.13
142 20 0.08
143 44 0.17
144 81 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:36529592 original size:40 final size:40
Alignment explanation
Indices: 36529513--36529738 Score: 311
Period size: 40 Copynumber: 5.8 Consensus size: 40
36529503 AGCATGATTA
*
36529513 CTCTTCGGGACCTAGCCCGGATA-A-CACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
36529551 CTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGGATG
1 CTCTTCG-GGACTTAGCCCGGATATATCACTAGCACGAATG
* *
36529591 CTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
36529631 CTCCTT--GGACTTAGCCCGGATATATCACTAGCACGAATG
1 CT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
36529670 CTCATCGGGACTTAGCCCAGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
36529710 CTC-TCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
36529739 CTCAATTCTC
Statistics
Matches: 165, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 19 0.12
39 64 0.39
40 80 0.48
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:36529661 original size:79 final size:77
Alignment explanation
Indices: 36529517--36529738 Score: 302
Period size: 79 Copynumber: 2.8 Consensus size: 77
36529507 TGATTACTCT
* ** * *
36529517 TCGGGACCTAGCCCGGATAA-CACTAGCACGAATGCTCTTCGAGGTTTAGCACGGATATATTACT
1 TCGGGACTTAGCCCGGATAATCACTAGCACGAATGCTCTT-G-GACTTAGCCCGGATATATCACT
* *
36529581 AGCACGGATGCTCC
64 AGCACGAATGCTCA
36529595 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCCTTGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATA-ATCACTAGCACGAATGCT-CTTGGACTTAGCCCGGATATATCACT
36529660 AGCACGAATGCTCA
64 AGCACGAATGCTCA
* *
36529674 TCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATA-ATCACTAGCACGAATGCTCT-TGGACTTAGCCCGGATATATCACT
36529739 CTCAATTCTC
Statistics
Matches: 130, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
78 20 0.15
79 90 0.69
80 17 0.13
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (77 bp):
TCGGGACTTAGCCCGGATAATCACTAGCACGAATGCTCTTGGACTTAGCCCGGATATATCACTAG
CACGAATGCTCA
Found at i:36530996 original size:37 final size:37
Alignment explanation
Indices: 36530946--36531024 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36530936 TTATTACGAA
* * *
36530946 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36530983 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36531020 GTCTT
1 GTCTT
36531025 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36531221 original size:47 final size:47
Alignment explanation
Indices: 36531143--36531564 Score: 713
Period size: 47 Copynumber: 8.9 Consensus size: 47
36531133 CCCTTCGGGA
* * * * * *
36531143 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36531190 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36531237 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36531283 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36531330 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36531379 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36531427 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36531474 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36531521 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
36531565 CGCCATACTA
Statistics
Matches: 360, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 46 0.13
47 220 0.61
48 48 0.13
49 46 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36531577 original size:144 final size:141
Alignment explanation
Indices: 36531143--36531564 Score: 713
Period size: 144 Copynumber: 3.0 Consensus size: 141
36531133 CCCTTCGGGA
* * * * * * * *
36531143 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36531208 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
36531272 GGCCATTAGGC
131 GGCCATTAGGC
36531283 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
36531348 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
36531412 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
36531427 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36531492 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
36531557 GGTCATTA
131 GGCCATTA
36531565 CGCCATACTA
Statistics
Matches: 267, Mismatches: 9, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
140 47 0.18
141 41 0.15
142 80 0.30
143 16 0.06
144 83 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:36535010 original size:40 final size:40
Alignment explanation
Indices: 36534966--36535195 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
36534956 AGCATGATTA
* *
36534966 CTCTTCGGGACCTAGCCCGGATATAACACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
36535006 CTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGGATG
1 CTCTTCG-GGACTTAGCCCGGATATATCACTAGCACGAATG
* *
36535046 CTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
36535086 CTCCTT-GGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
36535126 CTCATCGGGACTTAGCCCAGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
36535166 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
36535196 CTCAATTCTC
Statistics
Matches: 168, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.02
40 160 0.95
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:36536457 original size:37 final size:37
Alignment explanation
Indices: 36536407--36536485 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36536397 TTATTACGAA
* * * *
36536407 GTCTTACCCGGACATAATCTCCATACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36536444 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36536481 GTCTT
1 GTCTT
36536486 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36536682 original size:47 final size:47
Alignment explanation
Indices: 36536604--36536927 Score: 513
Period size: 47 Copynumber: 6.8 Consensus size: 47
36536594 CCCTTCGGGA
* * * * * *
36536604 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36536651 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36536698 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36536745 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36536794 CCTATCACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGC
*
36536843 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36536890 CTTATCACATATATACACTTTCACATTCATCACATCGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGG
36536928 TAATTACGCC
Statistics
Matches: 257, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 168 0.65
49 89 0.35
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36536876 original size:145 final size:143
Alignment explanation
Indices: 36536604--36536933 Score: 533
Period size: 145 Copynumber: 2.3 Consensus size: 143
36536594 CCCTTCGGGA
* * * * * * *
36536604 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCCTATCACATATATAC
36536667 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
36536732 TCGGCCATTAGGC
131 TCGGCCATTAGGC
36536745 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCCTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCCTATCACATATATA-
*
36536810 GCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCA
65 -CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
36536875 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
36536890 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGTAATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTA
36536934 CGCCATACTA
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 79 0.45
145 86 0.49
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:36542046 original size:53 final size:53
Alignment explanation
Indices: 36541960--36542070 Score: 195
Period size: 53 Copynumber: 2.1 Consensus size: 53
36541950 ATAAAAGCAT
*
36541960 AGCCTTAGTAAAAGTATTGTGGCAACGGCACGGTGTTGAAGAAGCCACGTGGG
1 AGCCCTAGTAAAAGTATTGTGGCAACGGCACGGTGTTGAAGAAGCCACGTGGG
* *
36542013 AGCCCTAGTAAAAGTATTGTGGCAACGGTACGGTGTTGAAGAAGCCGCGTGGG
1 AGCCCTAGTAAAAGTATTGTGGCAACGGCACGGTGTTGAAGAAGCCACGTGGG
36542066 AGCCC
1 AGCCC
36542071 AAGGAAGCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.27, C:0.19, G:0.34, T:0.20
Consensus pattern (53 bp):
AGCCCTAGTAAAAGTATTGTGGCAACGGCACGGTGTTGAAGAAGCCACGTGGG
Found at i:36544860 original size:20 final size:20
Alignment explanation
Indices: 36544831--36544875 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36544821 AGCACATGTA
*
36544831 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
* *
36544851 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTTAGAACTT
36544871 TTCAT
1 TTCAT
36544876 TTTAGTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:36548679 original size:27 final size:26
Alignment explanation
Indices: 36548631--36548690 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
36548621 AGCAGGCTGC
*
36548631 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
36548658 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
36548684 CAGATAT
1 CAGATAT
36548691 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36548779 original size:27 final size:26
Alignment explanation
Indices: 36548731--36548782 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36548721 GCGAGGCTGC
*
36548731 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36548757 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36548783 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36549494 original size:27 final size:27
Alignment explanation
Indices: 36549464--36549606 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
36549454 GAGGGTAAAA
* * *
36549464 TGGTAATTCTATAAATCAGGGGTACTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
36549491 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TGGTAATTTTACAAATCAG-GGGTATTT
* *
36549518 TGGTAATTTTACAAACCAGAGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
* * *
36549545 TGATAATTTTACAAACCAAGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
* * * *
36549572 TGGTGATTTTGCTAATCAAGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
36549599 TGGTAATT
1 TGGTAATT
36549607 CTGCCCTACA
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 96 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
TGGTAATTTTACAAATCAGGGGTATTT
Found at i:36554894 original size:27 final size:27
Alignment explanation
Indices: 36554864--36555041 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
36554854 TACTCTTCAG
** *
36554864 GGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCCA
*** * **
36554891 GGGTAAAATGGTAATTCTGTAAAT-CA
1 GGGTATTTTGGTAATTTTACAAATCCA
* * *
36554917 GGGGTACTTTGGTAATTTTACAAGTCGA
1 -GGGTATTTTGGTAATTTTACAAATCCA
36554945 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCCA
*
36554971 GAGGTATTTTGATAATTTTACAAA-CCA
1 G-GGTATTTTGGTAATTTTACAAATCCA
* * * *
36554998 GGGGTATTTTGGTGATTTTGCTAATCAA
1 -GGGTATTTTGGTAATTTTACAAATCCA
36555026 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
36555042 CTGCCCTACA
Statistics
Matches: 123, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.03
27 115 0.93
28 4 0.03
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCCA
Found at i:36554957 original size:54 final size:53
Alignment explanation
Indices: 36554860--36555041 Score: 179
Period size: 54 Copynumber: 3.4 Consensus size: 53
36554850 ATTTTACTCT
*** *
36554860 TCAGGGGTATTTTGGTAATTTTGTA-AATCGAGGGTAAAATGGTAATTCTGTAAA
1 TCAGGGGTATTTTGGTAA-TTT-TACAATCGAGGGTATTTTGGTAATTTTGTAAA
* **
36554914 TCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAA
1 TCAGGGGTATTTTGGTAATTTTACAA-TCGAGGGTATTTTGGTAATTTTGTAAA
* * * * * *
36554968 CCAGAGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTGATTTTGCT-AA
1 TCAGGGGTATTTTGGTAATTTTACAATCGA-GGGTATTTTGGTAATTTTG-TAAA
*
36555022 TCAAGGGTATTTTGGTAATT
1 TCAGGGGTATTTTGGTAATT
36555042 CTGCCCTACA
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
52 2 0.02
53 7 0.07
54 95 0.91
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (53 bp):
TCAGGGGTATTTTGGTAATTTTACAATCGAGGGTATTTTGGTAATTTTGTAAA
Found at i:36555056 original size:27 final size:28
Alignment explanation
Indices: 36554860--36555072 Score: 92
Period size: 27 Copynumber: 7.9 Consensus size: 28
36554850 ATTTTACTCT
*
36554860 TCAGGGGTATTTTGGTAATTTTG--TAAA
1 TCAGGGGTATTTTGGTAATTCTGCCT-AA
***
36554887 TC-GAGGGTAAAATGGTAATTCTG--TAAA
1 TCAG-GGGTATTTTGGTAATTCTGCCT-AA
* **
36554914 TCAGGGGTACTTTGGTAATT-TTAC-AA
1 TCAGGGGTATTTTGGTAATTCTGCCTAA
** *
36554940 GTC-GAGGGTATTTTGGTAATT-TTACAAA
1 -TCAG-GGGTATTTTGGTAATTCTGCCTAA
* * * ** *
36554968 CCAGAGGTATTTTGATAATT-TTACAAA
1 TCAGGGGTATTTTGGTAATTCTGCCTAA
* * *
36554995 CCAGGGGTATTTTGGTGATTTTG-CTAA
1 TCAGGGGTATTTTGGTAATTCTGCCTAA
*
36555022 TCAAGGGTATTTTGGTAATTCTGCCCT-A
1 TCAGGGGTATTTTGGTAATTCTG-CCTAA
*
36555050 -CAGGGGTATTTTAGTAATTCTGC
1 TCAGGGGTATTTTGGTAATTCTGC
36555073 AACTTATCCA
Statistics
Matches: 152, Mismatches: 23, Indels: 23
0.77 0.12 0.12
Matches are distributed among these distances:
26 6 0.04
27 138 0.91
28 6 0.04
29 2 0.01
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.38
Consensus pattern (28 bp):
TCAGGGGTATTTTGGTAATTCTGCCTAA
Found at i:36557644 original size:27 final size:26
Alignment explanation
Indices: 36557604--36557655 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
36557594 CTCGCTGCAA
36557604 TCTGGTGGCCTCGTCACATATATCTGT
1 TCTGGTGGCCTCGTCACA-ATATCTGT
* *
36557631 TCTGGTGTCTTCGTCACAATATCTG
1 TCTGGTGGCCTCGTCACAATATCTG
36557656 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.38
Consensus pattern (26 bp):
TCTGGTGGCCTCGTCACAATATCTGT
Found at i:36560629 original size:51 final size:51
Alignment explanation
Indices: 36560493--36560632 Score: 167
Period size: 51 Copynumber: 2.7 Consensus size: 51
36560483 GATGGCCGGC
* * *
36560493 GGCCTGCACATAGTACCACCCTTGT-AGTCAAAGTTACCTTCTTCACAAAGT
1 GGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTATCTTCTTCACAAAGT
* * *
36560544 GGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTT-TTACACATAGT
1 GGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTCTT-CACAAAGT
* * *
36560595 GGCCTGCACTTAGTACCACACATGTGATCGAAGCTATC
1 GGCCTGCACATAGTACCACACTTGTGATCAAAGCTATC
36560633 GGGTAAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 73 0.96
52 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (51 bp):
GGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTCTTCACAAAGT
Found at i:36560644 original size:51 final size:51
Alignment explanation
Indices: 36560536--36560717 Score: 152
Period size: 51 Copynumber: 3.6 Consensus size: 51
36560526 TTACCTTCTT
* * * * ***
36560536 CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTA
1 CACATAGTGGCCTCCACTTAGTACCACACATGTGACCAAAGCTATCGGGTA
* * *
36560587 CACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTA
1 CACATAGTGGCCTCCACTTAGTACCACACATGTGACCAAAGCTATCGGGTA
** * * * * *
36560638 -AGCATAGTAACCTCCACTTAGTACTACACATGCGACCTAA-CCATCTGGTA
1 CA-CATAGTGGCCTCCACTTAGTACCACACATGTGACCAAAGCTATCGGGTA
* * * *
36560688 CACGTAGTAGCCTACACTTAGTACTACACA
1 CACATAGTGGCCTCCACTTAGTACCACACA
36560718 CATGACCTAT
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
50 34 0.31
51 74 0.69
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
CACATAGTGGCCTCCACTTAGTACCACACATGTGACCAAAGCTATCGGGTA
Found at i:36560712 original size:50 final size:51
Alignment explanation
Indices: 36560640--36560771 Score: 140
Period size: 52 Copynumber: 2.6 Consensus size: 51
36560630 ATCGGGTAAG
* * **
36560640 CATAGTAACCTCCACTTAGTACTACACATGCGACC-TAACCATCTGGTACA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCATAACCATCTGAAACA
* *** * *
36560690 CGTAGTAGCCTACACTTAGTACTACACACATGACCTATAACCATTTTAAACA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACC-ATAACCATCTGAAACA
* *
36560742 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTACACTTAGTACTACACATG
36560772 TGTTCTCACA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
50 29 0.45
52 36 0.55
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACCATAACCATCTGAAACA
Found at i:36576038 original size:260 final size:260
Alignment explanation
Indices: 36575577--36576079 Score: 783
Period size: 260 Copynumber: 1.9 Consensus size: 260
36575567 CAACGTTCGG
* * * * * * *
36575577 TTGAACTTCATCTGAGTTTTGAGCATTAGCTGGCTCGTTTTGAACTTCGATGGTGTTGGGCTCTA
1 TTGAACTTCATCTGAGTCTTGAGCATCAACTGGCTCCTTTTGAACTTCAATAGTGTTAGGCTCTA
* * * *
36575642 ATATCTTTCCACTCCTCAGTGTTAATGCTTTACAATGCTCCTTCCCTAGATTCCTCGAATTCTCC
66 ATATCTTTCCACGCCTCAGTGTCAATACTTTACAATGCTCCTTCCCTAGATTCCTAGAATTCTCC
* * *
36575707 GTATCACTAGGTAAAGCACCTTTTGGTCAGTTTCTGAGTTCAGTAGCAAGTTGGCCCATTTGGTT
131 ATATCACTAGGTAAAGCACCTTTTGGTCAGTTTCTGACTTCAGTAGCAAGCTGGCCCATTTGGTT
*
36575772 TTCCAGGTTTTTCAATGTAGCTGCTTGGCTTTGTATTAAGGCATCATTCTTCGCCATGTATGCTA
196 TTCCAGGTTTTTCAATGTAGCTGCTTGGCTTTGAATTAAGGCATCATTCTTCGCCATGTATGCTA
*
36575837 TTGAACTTCCTCTGAGTCTTGAGCATCAACTGGCTCCTTTTGAACTTCAATAGTGTTAGGCTCTA
1 TTGAACTTCATCTGAGTCTTGAGCATCAACTGGCTCCTTTTGAACTTCAATAGTGTTAGGCTCTA
* * * *
36575902 ATGTCTTTCCGCGCCTCAGTGTCAATACTTTACAATGCTCCTTCCCTGGATTCCTAGGATTCTCC
66 ATATCTTTCCACGCCTCAGTGTCAATACTTTACAATGCTCCTTCCCTAGATTCCTAGAATTCTCC
* * *
36575967 ATATCACTAGGTAAAGCACCTTGTT-GTTAGTTTCTGACTTTAGTAGCAAGCTGGCCTATTTGGT
131 ATATCACTAGGTAAAGCACCTT-TTGGTCAGTTTCTGACTTCAGTAGCAAGCTGGCCCATTTGGT
36576031 TTTCCAGGTTTTTCAATGTAGCTGCTTGGCTTTGAATTAAGGCATCATT
195 TTTCCAGGTTTTTCAATGTAGCTGCTTGGCTTTGAATTAAGGCATCATT
36576080 TGTAACACCC
Statistics
Matches: 219, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
260 217 0.99
261 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.38
Consensus pattern (260 bp):
TTGAACTTCATCTGAGTCTTGAGCATCAACTGGCTCCTTTTGAACTTCAATAGTGTTAGGCTCTA
ATATCTTTCCACGCCTCAGTGTCAATACTTTACAATGCTCCTTCCCTAGATTCCTAGAATTCTCC
ATATCACTAGGTAAAGCACCTTTTGGTCAGTTTCTGACTTCAGTAGCAAGCTGGCCCATTTGGTT
TTCCAGGTTTTTCAATGTAGCTGCTTGGCTTTGAATTAAGGCATCATTCTTCGCCATGTATGCTA
Found at i:36582730 original size:20 final size:23
Alignment explanation
Indices: 36582705--36582754 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 23
36582695 TATAAAACCT
36582705 AATAAAAA-TAAG-CTTAAAA-A-
1 AATAAAAAGT-AGTCTTAAAATAG
36582725 AATAAAAAGTAGTCTTAAAATAG
1 AATAAAAAGTAGTCTTAAAATAG
36582748 AATAAAA
1 AATAAAA
36582755 GTAAAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 10 0.38
21 8 0.31
22 1 0.04
23 7 0.27
ACGTcount: A:0.66, C:0.04, G:0.08, T:0.22
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAATAG
Found at i:36585174 original size:37 final size:37
Alignment explanation
Indices: 36585115--36585223 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
36585105 AGCTCAGACG
* * * *
36585115 AAATCTCCAAACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
36585152 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36585189 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36585224 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36585424 original size:48 final size:48
Alignment explanation
Indices: 36585370--36585505 Score: 227
Period size: 48 Copynumber: 2.8 Consensus size: 48
36585360 GCACATCGCC
36585370 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
36585418 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
36585466 TACATGTTTCACATTAGCCATTCGGCCTTATCACACATAT
1 TACATATTTCACACTAGCCATTCGGCTTTA-C-CACATAT
36585506 GCATGTTCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
48 75 0.90
49 1 0.01
50 7 0.08
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:36585592 original size:94 final size:94
Alignment explanation
Indices: 36585474--36585685 Score: 397
Period size: 94 Copynumber: 2.3 Consensus size: 94
36585464 CATACATGTT
* *
36585474 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
36585539 CTTAACACATATATGCATGTTCACATTCA
66 CTTAACACATATATGCATGTTCACATTCA
36585568 TCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
*
36585633 CTTAACACATATATGTATGTTCACATTCA
66 CTTAACACATATATGCATGTTCACATTCA
36585662 TCACATTGGCCATTCGACCTTATC
1 TCACATTGGCCATTCGACCTTATC
36585686 TCTTATATAC
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 115 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
TCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
CTTAACACATATATGCATGTTCACATTCA
Found at i:36585693 original size:47 final size:47
Alignment explanation
Indices: 36585474--36585685 Score: 352
Period size: 47 Copynumber: 4.5 Consensus size: 47
36585464 CATACATGTT
* *
36585474 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
36585521 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
36585568 TCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
36585615 TCACATTGGCCATTCGGCCTTAACACATATATGTATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
36585662 TCACATTGGCCATTCGACCTTATC
1 TCACATTGGCCATTCGGCCTTATC
36585686 TCTTATATAC
Statistics
Matches: 153, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 153 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36589952 original size:40 final size:40
Alignment explanation
Indices: 36589920--36590231 Score: 410
Period size: 40 Copynumber: 7.8 Consensus size: 40
36589910 CCAGCATGAT
* * * *
36589920 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGTACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
36589960 TGCTCTTCGAGG-TTTAGCATGGATATATCACTAGCACAAA
1 TGCTCTTCG-GGACTTAGCCCGGATATATCACTAGCACGAA
** *
36590000 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36590040 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
36590080 TGCTCTTCGGGAGTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
36590120 TGCCCTTCGAGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36590160 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
36590200 TGCTCTTTGGGATTTAGCCCGGAGATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
36590232 CTCAATTCTC
Statistics
Matches: 239, Mismatches: 31, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
40 237 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36591534 original size:37 final size:37
Alignment explanation
Indices: 36591475--36591581 Score: 173
Period size: 35 Copynumber: 2.9 Consensus size: 37
36591465 AGCTCAGACG
* *
36591475 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
36591512 AAATCTCCACACGTAGTCATC-GGTCTTA-CCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36591547 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36591582 ATATATTTCC
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
35 27 0.42
36 14 0.22
37 24 0.37
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36591782 original size:48 final size:48
Alignment explanation
Indices: 36591728--36591862 Score: 227
Period size: 48 Copynumber: 2.8 Consensus size: 48
36591718 GCACATCGCC
36591728 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
36591776 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
36591824 TACAT-TTTCACATTAGCCATTCGGCCTTATCACACATAT
1 TACATATTTCACACTAGCCATTCGGCTTTA-C-CACATAT
36591863 GCATGTTCAC
Statistics
Matches: 83, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
47 22 0.27
48 54 0.65
49 7 0.08
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:36591882 original size:47 final size:47
Alignment explanation
Indices: 36591831--36592041 Score: 352
Period size: 47 Copynumber: 4.5 Consensus size: 47
36591821 TCATACATTT
*
36591831 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
36591878 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
36591925 TCACATTGGCCATTC-GCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
36591971 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
**
36592018 TCACATTGGCCATTCAACCTTATC
1 TCACATTGGCCATTCGGCCTTATC
36592042 TCAAATATAC
Statistics
Matches: 153, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 44 0.29
47 109 0.71
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:36591972 original size:93 final size:94
Alignment explanation
Indices: 36591831--36592041 Score: 388
Period size: 93 Copynumber: 2.3 Consensus size: 94
36591821 TCATACATTT
* *
36591831 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
36591896 CTTAACACATATATGCATGTTCACATTCA
66 CTTAACACATATATGCATGTTCACATTCA
36591925 TCACATTGGCCATTC-GCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
36591989 CTTAACACATATATGCATGTTCACATTCA
66 CTTAACACATATATGCATGTTCACATTCA
*
36592018 TCACATTGGCCATTCAACCTTATC
1 TCACATTGGCCATTCAGCCTTATC
36592042 TCAAATATAC
Statistics
Matches: 114, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
93 93 0.82
94 21 0.18
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (94 bp):
TCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGC
CTTAACACATATATGCATGTTCACATTCA
Found at i:36602264 original size:55 final size:53
Alignment explanation
Indices: 36602124--36602322 Score: 206
Period size: 53 Copynumber: 3.7 Consensus size: 53
36602114 TTTCCTTTTT
* * *
36602124 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGT-GGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATAGG-A-CCTTGCCTTATA
** *
36602177 GAACTCACCAATGCCATACCTTGGCATGGTCTTACATAGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATAGGACC-TTGCCTTATA
* * ***
36602231 GTAACTCATCAATACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACAT-AGGACCTTGCCTTATA
* *
36602286 GAACTTACCAATGCCAT-TCCTTGGCATGGTCTTACAT
1 GAACTCACCAATGCCATGT-CTTGACATGGTCTTACAT
36602323 GATATCCTTA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 42 0.34
54 33 0.27
55 42 0.34
56 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.35
Consensus pattern (53 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATAGGACCTTGCCTTATA
Found at i:36602364 original size:47 final size:47
Alignment explanation
Indices: 36602310--36602427 Score: 209
Period size: 47 Copynumber: 2.5 Consensus size: 47
36602300 CATTCCTTGG
* *
36602310 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
36602357 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
36602404 CATGGTCTTACATGGTATCCTTAT
1 CATGGTCTTACATGGTATCCTTAT
36602428 ATTAGTGCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:36609169 original size:37 final size:37
Alignment explanation
Indices: 36609110--36609182 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
36609100 AGCTCAGACG
* *
36609110 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGAAA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGAAA
*
36609147 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGAA
36609183 TATATTTCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGAAA
Found at i:36609382 original size:48 final size:48
Alignment explanation
Indices: 36609328--36609462 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
36609318 GCACATCGCC
36609328 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* *
36609376 TACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
*
36609424 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
36609463 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
Found at i:36609511 original size:47 final size:47
Alignment explanation
Indices: 36609432--36609719 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
36609422 CATACATATT
* * * *
36609432 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36609479 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
36609526 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36609573 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36609620 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36609667 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36609714 TCACAT
1 TCACAT
36609720 AAAATCCTAA
Statistics
Matches: 217, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36609646 original size:22 final size:22
Alignment explanation
Indices: 36609619--36609690 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
36609609 GCTCACATTC
36609619 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36609641 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36609665 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36609688 ATC
1 ATC
36609691 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36613560 original size:40 final size:40
Alignment explanation
Indices: 36613528--36613879 Score: 553
Period size: 40 Copynumber: 8.8 Consensus size: 40
36613518 CCAGCATGAT
* * * * *
36613528 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* ** *
36613568 TACTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTC-CGGATACATCACTAGCACGAA
* * *
36613608 TGCTCTTCGGAACTTTGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
36613648 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
36613688 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
36613728 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
36613768 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
36613808 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
36613848 TGCTCTTCGGGACTTAGTCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
36613880 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 287 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:36615163 original size:37 final size:37
Alignment explanation
Indices: 36615105--36615210 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
36615095 GCTCAGACGG
* *
36615105 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
36615142 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
36615179 AATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AATCTCCACACGTAGTCATCGGGTCTTACCCG
36615211 AAATATATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:36615413 original size:48 final size:48
Alignment explanation
Indices: 36615359--36615493 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
36615349 GCACATCGCC
36615359 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* *
36615407 TACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
*
36615455 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
36615494 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
Found at i:36615542 original size:47 final size:47
Alignment explanation
Indices: 36615463--36615655 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
36615453 CATACATATT
* * * *
36615463 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36615510 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36615557 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36615604 TCACATTGG-CATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36615650 TCACAT
1 TCACAT
36615656 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
46 39 0.30
47 93 0.70
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36626748 original size:9 final size:11
Alignment explanation
Indices: 36626722--36626761 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
36626712 TATATAAATG
36626722 AATTTAATACC
1 AATTTAATACC
36626733 AATTTAAT-CC
1 AATTTAATACC
36626743 -ATTTAATACAC
1 AATTTAATAC-C
36626754 AATTTAAT
1 AATTTAAT
36626762 TCAATTCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 7 0.27
10 3 0.12
11 9 0.35
12 7 0.27
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (11 bp):
AATTTAATACC
Found at i:36626748 original size:20 final size:21
Alignment explanation
Indices: 36626723--36626761 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
36626713 ATATAAATGA
36626723 ATTTAATAC-CAATTTAATCC
1 ATTTAATACACAATTTAATCC
36626743 ATTTAATACACAATTTAAT
1 ATTTAATACACAATTTAAT
36626762 TCAATTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTTAATACACAATTTAATCC
Found at i:36630237 original size:40 final size:40
Alignment explanation
Indices: 36630151--36630341 Score: 228
Period size: 40 Copynumber: 4.8 Consensus size: 40
36630141 GGATATAATT
* *
36630151 ACTCGCTCAAATGCCTTCAGGACATAGCCCGG-TTTAGTA
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATTTAGTA
* *
36630190 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATTTAGTA
* *
36630230 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATTTAGTA
* * * * *
36630270 ACTCGCGCAGATGCCTT-TGGACTT-GCCCGG-TTATAATC
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATT-TAGTA
* *
36630308 GCTAGCACAAATGCCTTCAGGACTTAGCCCGGAT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAT
36630342 ATCATTCGAA
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.02
38 21 0.16
39 40 0.31
40 66 0.51
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATTTAGTA
Found at i:36630292 original size:79 final size:78
Alignment explanation
Indices: 36630139--36630338 Score: 235
Period size: 79 Copynumber: 2.6 Consensus size: 78
36630129 CGGAATTTAA
* * * * *
36630139 CCGGATATAATTACTCGCTCAAATGCCTTCAGGACATAGCCCGGTTTAGTAACTCGCACAATTGC
1 CCGGTTATAATAACTCGCACAAATGCCTTCAGGACTTAGCCCGATTTAGTAACTCGCACAATTGC
36630204 CTTCGGGACTTAGC
66 CTTCGGGACTT-GC
* * *
36630218 CCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCGCAGA-
1 CCGG-TTATAATAACTCGCACAAATGCCTTCAGGACTTAGCCCG-ATTTAGTAACTCGCACA-AT
*
36630281 TGCCTT-TGGACTTGC
63 TGCCTTCGGGACTTGC
** *
36630296 CCGGTTATAATCGCTAGCACAAATGCCTTCAGGACTTAGCCCG
1 CCGGTTATAATAACTCGCACAAATGCCTTCAGGACTTAGCCCG
36630339 GATATCATTC
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
77 2 0.02
78 37 0.36
79 41 0.40
80 22 0.21
81 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CCGGTTATAATAACTCGCACAAATGCCTTCAGGACTTAGCCCGATTTAGTAACTCGCACAATTGC
CTTCGGGACTTGC
Found at i:36638318 original size:40 final size:39
Alignment explanation
Indices: 36638273--36638463 Score: 222
Period size: 40 Copynumber: 4.8 Consensus size: 39
36638263 GGATATAATT
* *
36638273 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAAAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-AAGTA
* *
36638313 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTAAGTA
* *
36638353 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTAAGTA
* * * * *
36638393 ACTCGCGCAGATGCCTTTGGGACTT-GCCCGGTTATAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-AGTA
* *
36638432 GCTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
36638464 ATATCATTCG
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.02
39 27 0.21
40 98 0.76
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAAGTA
Found at i:36640301 original size:39 final size:39
Alignment explanation
Indices: 36640247--36640362 Score: 171
Period size: 39 Copynumber: 3.0 Consensus size: 39
36640237 GCTGTCACAT
* * *
36640247 TTCCAGCACGTAGCCTGCAGACCTTAAGTTCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
* *
36640286 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
36640325 TTCCAGCACATAGCCTGCGGACCCTAAG-TCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTTC-GGATATA
36640363 CATCACTGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 68 0.99
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
Found at i:36643813 original size:30 final size:31
Alignment explanation
Indices: 36643741--36643816 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
36643731 CGACATATAC
36643741 TGGGCCGAAGCCTTTTCATAAATCATATCAT
1 TGGGCCGAAGCCTTTTCATAAATCATATCAT
*
36643772 TGGGTCGAAGCCTTTTCATAAATCATATCAT
1 TGGGCCGAAGCCTTTTCATAAATCATATCAT
36643803 T-GGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
36643817 ACTGTAAGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
30 12 0.28
31 31 0.72
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAT
Found at i:36644064 original size:25 final size:25
Alignment explanation
Indices: 36644036--36644105 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
36644026 CTCTTTTAAT
36644036 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
36644061 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
36644086 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36644106 AGCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:36644939 original size:27 final size:27
Alignment explanation
Indices: 36644904--36644960 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
36644894 GAGCATATTC
* *
36644904 GTCATTTTACCATACATGGGTATTACG
1 GTCACTTTACCATACAGGGGTATTACG
* *
36644931 GTCACTTTACCCTACAGGGGTTTTACG
1 GTCACTTTACCATACAGGGGTATTACG
36644958 GTC
1 GTC
36644961 TTTTTTACCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGTATTACG
Found at i:36644971 original size:27 final size:26
Alignment explanation
Indices: 36644904--36644982 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
36644894 GAGCATATTC
*
36644904 GTCATTTTACCATACATGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
* *
36644931 GTCACTTTACCCTACAGGGGTTTTACG
1 GTCATTTTA-CCTACAGGGGTATTACG
* *
36644958 GTCTTTTTTACCTATTAGGGGTATT
1 GTC-ATTTTACCTA-CAGGGGTATT
36644983 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
27 28 0.67
28 14 0.33
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:36645136 original size:27 final size:27
Alignment explanation
Indices: 36645001--36645209 Score: 170
Period size: 27 Copynumber: 7.7 Consensus size: 27
36644991 TTCATCCTAC
* * * *
36645001 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
36645028 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
36645055 AATGGTATTTCT-ATAATTTTTAAAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
* ** *
36645083 CAAGGGTATTTTTGTAATTTTGTAAATT
1 -AAGGGTATTTTGGTAATTTTACAAACT
*
36645111 AAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
36645138 ATGGGTATTTCGGTAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
36645165 -AGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
36645192 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
36645210 CTACCCTATA
Statistics
Matches: 146, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 116 0.79
28 17 0.12
29 12 0.08
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:36645182 original size:110 final size:108
Alignment explanation
Indices: 36645001--36645209 Score: 231
Period size: 110 Copynumber: 1.9 Consensus size: 108
36644991 TTCATCCTAC
* ***
36645001 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTC
1 AAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTC
* *
36645066 TATAATTTTTAAAAAGTCAAGGGTATTTTTGTAATTTTGTAAATT
66 TATAA-TTTTAAAAACT-AAGGGTATTTTGGTAATTTTGTAAATT
* * ** * * * *
36645111 AAGGGTATTTTGGTAATTTTACAAATTATGGGTATTTCGGTAATTTCACAAACTAGTGGTATTT-
1 AAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTC
* * *
36645175 TGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
66 T-ATAATTTTAAAAACTAAGGGTATTTTGGTAATT
36645210 CTACCCTATA
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
108 16 0.20
109 10 0.12
110 55 0.68
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (108 bp):
AAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTC
TATAATTTTAAAAACTAAGGGTATTTTGGTAATTTTGTAAATT
Found at i:36645226 original size:81 final size:81
Alignment explanation
Indices: 36645087--36645242 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
36645077 AAAAGTCAAG
* ** * * ** *
36645087 GGTATTTTTGTAATTTTGTAAATTAAGGGTATTTTGGTAATTTTACAAATTATGGGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTACAAATTAAAGGTATTTCAGT
36645152 AATTTCACAAACTAGT
66 AATTTCACAAACTAGT
* **
36645168 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTAC-CCTATAAAGGTATTTCAG
1 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTACAAAT-TAAAGGTATTTCAG
36645232 TAATTTCACAA
65 TAATTTCACAA
36645243 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.02
81 62 0.98
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTACAAATTAAAGGTATTTCAGT
AATTTCACAAACTAGT
Found at i:36645277 original size:27 final size:27
Alignment explanation
Indices: 36645241--36645332 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
36645231 GTAATTTCAC
*
36645241 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
36645268 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
36645295 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
36645322 AATTGAGGGTA
1 AATCGAGGGTA
36645333 CTTTGGTAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:36647318 original size:44 final size:44
Alignment explanation
Indices: 36647270--36647368 Score: 189
Period size: 44 Copynumber: 2.2 Consensus size: 44
36647260 TAAATGTGTG
36647270 CGAGTAAGACCATGGCATCGATATGTGATTCTGATATGTGTTTA
1 CGAGTAAGACCATGGCATCGATATGTGATTCTGATATGTGTTTA
36647314 CGAGTAAGACCATGGCATCGATATGTGATTCTGATATGTGTTTA
1 CGAGTAAGACCATGGCATCGATATGTGATTCTGATATGTGTTTA
*
36647358 CAAGTAAGACC
1 CGAGTAAGACC
36647369 CTGTTTGGGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (44 bp):
CGAGTAAGACCATGGCATCGATATGTGATTCTGATATGTGTTTA
Found at i:36657454 original size:38 final size:38
Alignment explanation
Indices: 36657411--36657626 Score: 207
Period size: 38 Copynumber: 5.2 Consensus size: 38
36657401 TTTCAAATTA
*
36657411 ACATGTATAACCGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
*
36657449 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
36657490 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
36657534 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
36657575 GAATCAATATATGTAACCGTGGCATATCCAATTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
36657619 ACATGTAT
1 ACATGTAT
36657627 CAATATGTGT
Statistics
Matches: 148, Mismatches: 12, Indels: 36
0.76 0.06 0.18
Matches are distributed among these distances:
38 63 0.43
39 2 0.01
40 7 0.05
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 2 0.01
47 56 0.38
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:36657518 original size:85 final size:85
Alignment explanation
Indices: 36657418--36657624 Score: 387
Period size: 85 Copynumber: 2.4 Consensus size: 85
36657408 TTAACATGTA
*
36657418 TAACCGTGGCATATCCACTTAGCACTACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
36657483 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
36657503 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
36657568 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
36657588 TAACCGTGGCATATCCAATTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
36657625 ATCAATATGT
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 119 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:36657525 original size:47 final size:47
Alignment explanation
Indices: 36657456--36657649 Score: 253
Period size: 47 Copynumber: 4.3 Consensus size: 47
36657446 GTTACATGTT
36657456 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
36657503 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
36657541 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
36657588 TAACCGTGGCATATCCAATTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
36657636 TAATCGTGGTATAT
1 TAACCGTGGCATAT
36657650 TGTATAACCG
Statistics
Matches: 128, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
38 28 0.22
39 2 0.02
40 3 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.02
46 2 0.02
47 59 0.46
48 25 0.20
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:36663754 original size:47 final size:47
Alignment explanation
Indices: 36663688--36664067 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
36663678 GAAATGATAG
36663688 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36663735 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36663782 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
36663829 TAAGGCCTAAAGACCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36663876 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36663923 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36663970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
36664017 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36664064 TAAG
1 TAAG
36664068 TCCCGAAGGG
Statistics
Matches: 310, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 310 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36663840 original size:25 final size:25
Alignment explanation
Indices: 36663812--36663885 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
36663802 GATGAATGTG
36663812 AAAGTGTATATATGTGATAAGGCCT
1 AAAGTGTATATATGTGATAAGGCCT
*** *
36663837 AAA--G-ACCGATGTGATGAATG--T
1 AAAGTGTATATATGTGAT-AAGGCCT
36663858 GAAAGTGTATATATGTGATAAGGCCT
1 -AAAGTGTATATATGTGATAAGGCCT
36663884 AA
1 AA
36663886 TGGCCGATGT
Statistics
Matches: 34, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
21 1 0.03
22 11 0.32
23 4 0.12
24 4 0.12
25 13 0.38
26 1 0.03
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.28
Consensus pattern (25 bp):
AAAGTGTATATATGTGATAAGGCCT
Found at i:36668008 original size:12 final size:12
Alignment explanation
Indices: 36667991--36668018 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
36667981 CTCCAGTTTT
36667991 CACATGACCTAG
1 CACATGACCTAG
36668003 CACATGACCTAG
1 CACATGACCTAG
36668015 CACA
1 CACA
36668019 CGGGCATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (12 bp):
CACATGACCTAG
Found at i:36678855 original size:44 final size:44
Alignment explanation
Indices: 36678778--36679149 Score: 237
Period size: 44 Copynumber: 8.8 Consensus size: 44
36678768 TGATATTTCA
* * * *
36678778 ATCTGCTCTCTGTCAAACACAAAGACGCCAAATCTGCTATCTTCG
1 ATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGCTATCTTCG
* *
36678823 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTGTCTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * *
36678867 ATCTGCTCCCTG---A-A-A-ATATGCCAAATCTGCT-TCTTGG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * * * * * *
36678904 ATTTACTC-CTTGTCGAATACAAAGATGTCAAGTCTACTATC-TCTG
1 ATCTGCTCTC-TGAC-AATACAGAGATGCCAAATCTGCTATCTTC-G
* * * * * *
36678949 ATTTGCTCTCTGACCATACAAATAGGCCAAATCTACTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * *
36678993 ATCTGCTCCCTTACAATACA-AGGATGCCAAATCTGCT-TCTTGG
1 ATCTGCTCTCTGACAATACAGA-GATGCCAAATCTGCTATCTTCG
* * * * * *
36679036 ATTTTC-CCCTCGTCAAATAC-GAAGATGCCAAA--T-C-AGCTTGG
1 ATCTGCTCTCT-GAC-AATACAG-AGATGCCAAATCTGCTATCTTCG
*
36679077 ATCTGCTATCTGACAATACAGAGATGCCAAATCTG----CTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
36679117 ATCTGCTCTCTGACAATACAGAGATGCCAAATC
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATC
36679150 ATCTTGGATC
Statistics
Matches: 262, Mismatches: 42, Indels: 51
0.74 0.12 0.14
Matches are distributed among these distances:
36 1 0.00
37 13 0.05
38 14 0.05
39 1 0.00
40 52 0.20
41 15 0.06
42 9 0.03
43 12 0.05
44 115 0.44
45 29 0.11
46 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
Found at i:36679102 original size:40 final size:40
Alignment explanation
Indices: 36679058--36679163 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
36679048 TCAAATACGA
36679058 AGATGCCAAATCAGCTTGGATCTGCTATCTGACAATACAG
1 AGATGCCAAATCAGCTTGGATCTGCTATCTGACAATACAG
* * *
36679098 AGATGCCAAATCTGCTTCGATCTGCTCTCTGACAATACAG
1 AGATGCCAAATCAGCTTGGATCTGCTATCTGACAATACAG
*
36679138 AGATGCCAAATCATCTTGGATCTGCT
1 AGATGCCAAATCAGCTTGGATCTGCT
36679164 TCAGCGTAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (40 bp):
AGATGCCAAATCAGCTTGGATCTGCTATCTGACAATACAG
Found at i:36691332 original size:12 final size:13
Alignment explanation
Indices: 36691316--36691353 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
36691306 AAGTAATGCA
36691316 AGGTATAATATAT
1 AGGTATAATATAT
*
36691329 -GGTAAAATATAT
1 AGGTATAATATAT
36691341 AGTGTATAATATA
1 AG-GTATAATATA
36691354 ATTTGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:36691495 original size:11 final size:11
Alignment explanation
Indices: 36691461--36691502 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
36691451 TATAAGGAAT
36691461 AATATATAATAA
1 AATATA-AATAA
*
36691473 GATATGAAATAA
1 AATAT-AAATAA
36691485 AATATAAATAA
1 AATATAAATAA
36691496 AATATAA
1 AATATAA
36691503 TGAAATGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 13 0.48
12 13 0.48
13 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (11 bp):
AATATAAATAA
Found at i:36691642 original size:12 final size:13
Alignment explanation
Indices: 36691613--36691683 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 13
36691603 ACATTATTTA
36691613 AAATAA-AAATAT
1 AAATAATAAATAT
*
36691625 ATATAATAAA-AT
1 AAATAATAAATAT
36691637 AAATAATAAATAT
1 AAATAATAAATAT
36691650 AATTTATAAGTAAAATAT
1 AA---ATAA-T-AAATAT
*
36691668 AGAATAATAAAAAT
1 A-AATAATAAATAT
36691682 AA
1 AA
36691684 CATGATGGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
12 16 0.33
13 8 0.17
14 6 0.12
15 1 0.02
16 8 0.17
17 1 0.02
18 7 0.15
19 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
AAATAATAAATAT
Found at i:36691642 original size:44 final size:44
Alignment explanation
Indices: 36691594--36691679 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
36691584 ACAATTAATG
* *
36691594 AATAATAATACATTATTTA-AAATAAAAATATA-TATAATAAAATA
1 AATAATAA-ACATAATTTATAAAT-AAAATATAGAATAATAAAATA
* *
36691638 AATAATAAATATAATTTATAAGTAAAATATAGAATAATAAAA
1 AATAATAAACATAATTTATAAATAAAATATAGAATAATAAAA
36691680 ATAACATGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 16 0.44
44 20 0.56
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (44 bp):
AATAATAAACATAATTTATAAATAAAATATAGAATAATAAAATA
Found at i:36691649 original size:21 final size:20
Alignment explanation
Indices: 36691611--36691652 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
36691601 ATACATTATT
*
36691611 TAAAATAAAAATATATATAA
1 TAAAATAAAAATAAATATAA
36691631 TAAAATAAATAATAAATATAA
1 TAAAATAAA-AATAAATATAA
36691652 T
1 T
36691653 TTATAAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATAAAAATAAATATAA
Found at i:36698354 original size:18 final size:17
Alignment explanation
Indices: 36698328--36698361 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36698318 CTCATTTGTA
36698328 TGTTTGTAAGAATTTAG
1 TGTTTGTAAGAATTTAG
*
36698345 TGTTTAGTAAGAGTTTA
1 TGTTT-GTAAGAATTTA
36698362 CCTGTTGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (17 bp):
TGTTTGTAAGAATTTAG
Found at i:36702760 original size:42 final size:42
Alignment explanation
Indices: 36702706--36702824 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
36702696 CACATAGTAC
* *
36702706 CATACCAATGCCATATCTCAGATAGGGTCTTACATTGGAT-CT
1 CATATCAATGCCATATCTCAGATAGGGTCTTACA-TGAATCCT
* * * *
36702748 CATATCGATGCCAATAGCCCAG-TTGTGGTCTTACATGAATCCT
1 CATATCAATGCC-ATATCTCAGATAG-GGTCTTACATGAATCCT
*
36702791 CATATCAATGCCATATCTCAGATATGGTCTTACA
1 CATATCAATGCCATATCTCAGATAGGGTCTTACA
36702825 AGTAATCTCA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CATATCAATGCCATATCTCAGATAGGGTCTTACATGAATCCT
Found at i:36705014 original size:21 final size:19
Alignment explanation
Indices: 36704976--36705014 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
36704966 CTAAATTTTG
*
36704976 AAAATTTTCTATGTTTTCC
1 AAAATTTTCTAAGTTTTCC
36704995 AAAATTTTTCCTAAGTTTTC
1 AAAA-TTTT-CTAAGTTTTC
36705015 GATTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.51
Consensus pattern (19 bp):
AAAATTTTCTAAGTTTTCC
Found at i:36708097 original size:13 final size:13
Alignment explanation
Indices: 36708079--36708104 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36708069 AGGACCTCCA
36708079 ACACTCCCTATAG
1 ACACTCCCTATAG
36708092 ACACTCCCTATAG
1 ACACTCCCTATAG
36708105 TTGTAATGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.08, T:0.23
Consensus pattern (13 bp):
ACACTCCCTATAG
Found at i:36710316 original size:48 final size:47
Alignment explanation
Indices: 36710245--36710519 Score: 216
Period size: 48 Copynumber: 5.7 Consensus size: 47
36710235 TGGCATCATA
*
36710245 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTGTG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAATG-TGTG
* * * *
36710293 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGTGTCGATATGT-
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC--AG-CAATGTGTG
* * * * * *
36710342 -GTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTAGCCACAT-TATG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CA-ATGTGTG
* * * *
36710389 AGAGCCAGTGTAAGACCATGTTTCGGACATGGCAT-TGACATTGAGATG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CAATGTG-TG
* * ** * * * *
36710437 AGAGCCAATGTAAGACCATGTATGGGTTATGGCATCGGCATTGAGACG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAATGTG-TG
* *
36710485 GGAGCAAGTGTAAGACCATGTTTGGGACATGGCAT
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
36710520 TGGCCTCGAC
Statistics
Matches: 182, Mismatches: 36, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
46 5 0.03
47 5 0.03
48 164 0.90
49 1 0.01
50 4 0.02
51 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAATGTGTG
Found at i:36710449 original size:96 final size:94
Alignment explanation
Indices: 36710245--36710565 Score: 268
Period size: 96 Copynumber: 3.4 Consensus size: 94
36710235 TGGCATCATA
* * * ** *
36710245 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTGTGAGAGCCAGTGTAAGACC
1 AGAGCCAATGTAAGACCATGTCTGGGACATGGC-T-AGCAACATTATGAGAGCCAGTGTAAGACC
* * ** *
36710310 ATGTTTGGGACATGGCGTCGGTGTCGATATG
64 ATGTTTGGGACATGGCATTGGCATCGACATG
* * * * *
36710341 TGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTAGCCACATTATGAGAGCCAGTGTAAGACC
1 AGAGCCAATGTAAGACCATGTCTGGGACATGGC--TAGCAACATTATGAGAGCCAGTGTAAGACC
* * * *
36710406 ATGTTTCGGACATGGCATTGACATTGAGATG
64 ATGTTTGGGACATGGCATTGGCATCGACATG
* ** * ** *
36710437 AGAGCCAATGTAAGACCATGTATGGGTTATGGC-ATCGGCATTGA-GACGGGAGCAAGTGTAAGA
1 AGAGCCAATGTAAGACCATGTCTGGGACATGGCTAGCAACATT-ATGA---GAGCCAGTGTAAGA
* *
36710500 CCATGTTTGGGACATGGCATTGGCCTCGACTTG
62 CCATGTTTGGGACATGGCATTGGCATCGACATG
* * *
36710533 TGATCCAATGAAAGACCATGTCTGGGACATGGC
1 AGAGCCAATGTAAGACCATGTCTGGGACATGGC
36710566 ATCAGCAATT
Statistics
Matches: 179, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
93 8 0.04
94 1 0.01
96 169 0.94
97 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (94 bp):
AGAGCCAATGTAAGACCATGTCTGGGACATGGCTAGCAACATTATGAGAGCCAGTGTAAGACCAT
GTTTGGGACATGGCATTGGCATCGACATG
Found at i:36710505 original size:144 final size:144
Alignment explanation
Indices: 36710245--36710574 Score: 353
Period size: 144 Copynumber: 2.3 Consensus size: 144
36710235 TGGCATCATA
* *
36710245 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTGTGAGAGCCAGTGTAAGACC
1 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTAGTGAGAGCCAATGTAAGACC
* * ** * * * * *
36710310 ATGTTTGGGACATGGCGTCGGTGTCGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCG
66 ATGTATGGGACATGGCATCGGCATCGAGACGGGAGCAAGTGTAAGACCATGTCTGGGACATGGCG
36710375 TTAGCCACATTATG
131 TTAGCCACATTATG
* *
36710389 AGAGCCAGTGTAAGACCATGTTTCGG-ACATGGCAT-TGACATTG-AGATGAGAGCCAATGTAAG
1 AGAGCCAGTGTAAGACCATGTTT-GGAACATGGCATCAG-CAATGTAG-TGAGAGCCAATGTAAG
** * *
36710451 ACCATGTATGGGTTATGGCATCGGCATTGAGACGGGAGCAAGTGTAAGACCATGTTTGGGACATG
63 ACCATGTATGGGACATGGCATCGGCATCGAGACGGGAGCAAGTGTAAGACCATGTCTGGGACATG
* * * *
36710516 GCATTGGCCTCGACT-TG
128 GCGTTAGCCAC-ATTATG
* * * * * *
36710533 TGATCCAATGAAAGACCATGTCTGGGACATGGCATCAGCAAT
1 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAAT
36710575 TCACCCTCTT
Statistics
Matches: 152, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
143 4 0.03
144 143 0.94
145 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (144 bp):
AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTAGTGAGAGCCAATGTAAGACC
ATGTATGGGACATGGCATCGGCATCGAGACGGGAGCAAGTGTAAGACCATGTCTGGGACATGGCG
TTAGCCACATTATG
Found at i:36715569 original size:47 final size:47
Alignment explanation
Indices: 36715473--36715580 Score: 146
Period size: 47 Copynumber: 2.3 Consensus size: 47
36715463 TGTGTGAGCT
* ** *
36715473 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCACATTATAAGAGCC
1 AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATAAGAACC
* * *
36715519 AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATGATAATC
1 AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATAAGAACC
36715566 AGTGTAAGACCATGT
1 AGTGTAAGACCATGT
36715581 CGACATGAGA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 9 0.17
47 45 0.83
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATAAGAACC
Found at i:36723693 original size:20 final size:21
Alignment explanation
Indices: 36723657--36723696 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
36723647 ATTATTTAGT
36723657 CTTATTCTTATTCTTATTTTA
1 CTTATTCTTATTCTTATTTTA
*
36723678 CTTATT-TTATTTTTATTTT
1 CTTATTCTTATTCTTATTTT
36723697 TATTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (21 bp):
CTTATTCTTATTCTTATTTTA
Found at i:36723693 original size:26 final size:24
Alignment explanation
Indices: 36723658--36723718 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 24
36723648 TTATTTAGTC
*
36723658 TTATTCTTATTCTTATTTTACTTATT
1 TTATTTTTATTCTTATTTTAC-T-TT
* *
36723684 TTATTTTTATTTTTATTTTTCTTT
1 TTATTTTTATTCTTATTTTACTTT
*
36723708 TGATTTTTATT
1 TTATTTTTATT
36723719 TTCATTTCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 12 0.39
25 1 0.03
26 18 0.58
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (24 bp):
TTATTTTTATTCTTATTTTACTTT
Found at i:36723701 original size:6 final size:6
Alignment explanation
Indices: 36723642--36723744 Score: 66
Period size: 6 Copynumber: 16.7 Consensus size: 6
36723632 AATCCTCTTT
* * * *
36723642 TTTTTA TTATTTA GTCTTA TTCTTA TTCTTA -TTTTA CTTATTTTA TTTTTA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA --T-TTTTA TTTTTA
* * * * *
36723693 TTTTTA TTTTTC TTTTGA TTTTTA TTTTCA -TTTCA GTTTTA TTTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA
36723741 TTTT
1 TTTT
36723745 GAAAGACATA
Statistics
Matches: 79, Mismatches: 11, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
5 9 0.11
6 54 0.68
7 11 0.14
9 5 0.06
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:36723708 original size:18 final size:18
Alignment explanation
Indices: 36723679--36723738 Score: 63
Period size: 17 Copynumber: 3.4 Consensus size: 18
36723669 CTTATTTTAC
36723679 TTATTTTAT-TTTT-ATTT
1 TTATTTT-TCTTTTCATTT
*
36723696 TTATTTTTCTTTTGATTT
1 TTATTTTTCTTTTCATTT
* *
36723714 TTA-TTTTCATTTCAGTT
1 TTATTTTTCTTTTCATTT
36723731 TTATTTTT
1 TTATTTTT
36723739 TATTTTGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.03
17 25 0.68
18 11 0.30
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (18 bp):
TTATTTTTCTTTTCATTT
Found at i:36727137 original size:43 final size:42
Alignment explanation
Indices: 36727076--36727197 Score: 120
Period size: 42 Copynumber: 2.8 Consensus size: 42
36727066 TCCTAGATGT
* * * * *
36727076 GGTCTTACATGTAATCAAATATCTATGCCACTGTCCCAAATAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAAACAG
* * *
36727119 GGTCTTACACGAAATCAAATACGATGTCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAACAG
*
36727161 GGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCC
1 GGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCC
36727198 TAGACGTAGT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 26 0.39
43 25 0.38
44 14 0.21
45 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAACAG
Found at i:36727166 original size:42 final size:42
Alignment explanation
Indices: 36727075--36727214 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 42
36727065 GTCCTAGATG
* * * * * *
36727075 TGGTCTTACATGTAATCAAATATCTATGCCACTGTCCCAAATA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACA
* *
36727118 GGGTCTTACACGAAATCAAATACGATGTCAATGTCCCAGACA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACA
* * *
36727160 TGGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCCTAGACG
1 TGGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCCCAGACA
*
36727204 TAGTCTTACAC
1 TGGTCTTACAC
36727215 AAAAACACAT
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 26 0.32
43 25 0.31
44 28 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACA
Found at i:36730367 original size:34 final size:34
Alignment explanation
Indices: 36730329--36730406 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
36730319 AATGACAGTC
* *
36730329 CAGTATCAGTGTGGGCCTTAGCCCA-TAGTAGTAG
1 CAGTATCAGTGTGGGCCTTAGCCCATTA-CAGTAA
*
36730363 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
36730397 CAGTATCAGT
1 CAGTATCAGT
36730407 AATGCAACAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 37 0.95
35 2 0.05
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:36743647 original size:47 final size:47
Alignment explanation
Indices: 36743593--36743825 Score: 367
Period size: 47 Copynumber: 5.0 Consensus size: 47
36743583 TTAGGATTTT
** * *
36743593 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36743640 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36743687 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36743734 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
36743781 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
36743826 TAATATGAAA
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36743668 original size:25 final size:25
Alignment explanation
Indices: 36743640--36743718 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
36743630 CGAATGGCCA
36743640 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
36743665 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
36743687 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
36743712 ATGTGAT
1 ATGTGAT
36743719 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 8 0.20
24 9 0.22
25 15 0.38
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:36743693 original size:22 final size:22
Alignment explanation
Indices: 36743622--36743740 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
36743612 GTATATATGA
36743622 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
36743644 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
36743669 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
36743691 GATGAATGTG-AGCAT-GCATATATGT
1 GAT-AA-G-GCCGAATGGC-CA-ATGT
36743716 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
36743738 GAT
1 GAT
36743741 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:36743789 original size:25 final size:25
Alignment explanation
Indices: 36743714--36743789 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
36743704 ATGCATATAT
36743714 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
36743739 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
36743761 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
36743786 GTGA
1 GTGA
36743790 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:36743957 original size:98 final size:96
Alignment explanation
Indices: 36743804--36743987 Score: 296
Period size: 98 Copynumber: 1.9 Consensus size: 96
36743794 GAACATGCAT
* * *
36743804 ATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTTAAGCCGA
1 ATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
36743869 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
36743900 ATATGTGGTAAAGCCAAATGGTTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCAAATGGCTAATATG-AA-ATATATATGAGATATGTATATGTGGTAAAGCC
*
36743965 GAATGGCTAGTGTGAAATATGTA
64 GAATGGCTAATGTGAAATATGTA
36743988 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 26 0.32
97 2 0.03
98 52 0.65
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:36744003 original size:50 final size:48
Alignment explanation
Indices: 36743803--36743987 Score: 289
Period size: 48 Copynumber: 3.8 Consensus size: 48
36743793 TGAACATGCA
*
36743803 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
36743851 TATATGTGGTTAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
36743899 CATATGTGGTAAAGCCAAATGGTTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATG
*
36743949 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
36743988 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
48 78 0.63
49 4 0.03
50 41 0.33
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:36744184 original size:37 final size:37
Alignment explanation
Indices: 36744134--36744240 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
36744124 GGAAATATAT
*
36744134 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* *
36744171 TCCGGGTAAGACCCGATTACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
*
36744208 TCCGGGTAAGACCCGATAACTTCG-GTGGAGATT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATT
36744241 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 9 0.14
37 57 0.86
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
Found at i:36745514 original size:17 final size:17
Alignment explanation
Indices: 36745494--36745528 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
36745484 ACATTTATCT
36745494 TTTGAAAATTCCCGTCC
1 TTTGAAAATTCCCGTCC
*
36745511 TTTGAAAATTCGCGTCC
1 TTTGAAAATTCCCGTCC
36745528 T
1 T
36745529 ACTGCTAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (17 bp):
TTTGAAAATTCCCGTCC
Found at i:36745849 original size:34 final size:34
Alignment explanation
Indices: 36745811--36745888 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
36745801 AATGATAGTC
*
36745811 CAGTATCAGTGTAGGCCTTAGCCCA-TAGTAGTAG
1 CAGTATCAGTGTAGGCCTTAGCCCATTAG-AGTAA
* *
36745845 CAGTATCAATGTGGGCCTTAGCCCATTAGAGTAA
1 CAGTATCAGTGTAGGCCTTAGCCCATTAGAGTAA
36745879 CAGTATCAGT
1 CAGTATCAGT
36745889 AATGCAACAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 36 0.92
35 3 0.08
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTAGGCCTTAGCCCATTAGAGTAA
Found at i:36745948 original size:22 final size:23
Alignment explanation
Indices: 36745908--36745950 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
36745898 GAAGTCCTAC
*
36745908 CCATCTATCCTCTACACTCCACA
1 CCATCTAGCCTCTACACTCCACA
36745931 CCATCTAGCCT-TACACTCCA
1 CCATCTAGCCTCTACACTCCA
36745951 TTTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.26, C:0.47, G:0.02, T:0.26
Consensus pattern (23 bp):
CCATCTAGCCTCTACACTCCACA
Found at i:36754703 original size:48 final size:48
Alignment explanation
Indices: 36754631--36754902 Score: 246
Period size: 48 Copynumber: 5.7 Consensus size: 48
36754621 TATGTGCGCT
* *
36754631 AGTGTAAGACCATGACTGGGACATGGCGTCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
* * * * * ** *
36754679 AGTGTAAGACAATGTTTGGAACATGGCATCGGCAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
* *** * *
36754727 AATGTAAGACCATGTCTGGGACATGGCATCGACGTTGA-TATGTA-TGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CACATTATG-AGAGCC
* * * *
36754775 AGCGTAAGACCATGTCTGGGACATGGCGTCGGCCACATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
*** * *
36754823 AGTGTAAGACCATGTCTGGGACATGGCATCGTA-TTGA-GACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-ACCACATTATGAGAGCC
* *
36754870 AGTGTAAGACCATGTTTGGGCCATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
36754903 ATTGAGACGA
Statistics
Matches: 175, Mismatches: 43, Indels: 13
0.76 0.19 0.06
Matches are distributed among these distances:
46 1 0.01
47 38 0.22
48 135 0.77
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
Found at i:36754895 original size:47 final size:47
Alignment explanation
Indices: 36754631--36754940 Score: 224
Period size: 48 Copynumber: 6.5 Consensus size: 47
36754621 TATGTGCGCT
* * *
36754631 AGTGTAAGACCATGACTGGGACATGGCGTCGACCACATT-ATGA-GAG-CC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG---ACATTGA-GACGAGAGC
* * * * * * *
36754679 AGTGTAAGACAATGTTTGGAACATGGCATCGGCAATGTTG-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG-AGACGAGAG-C
* * * * *
36754727 AATGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTA-TGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG-AGAGC
* * *
36754774 TAGCGTAAGACCATGTCTGGGACATGGCGTCGGCCACATT-ATGA-GAG-TC
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGA-GACGAGAGC
*
36754823 AGTGTAAGACCATGTCTGGGACATGGCATCG-TATTGAGACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAG-C
* * *
36754870 AGTGTAAGACCATGTTTGGGCCATGGCATCGACATTGAGACGAAAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGC
* *
36754917 TGTGTAAGACCAGGTCTGGGACAT
1 AGTGTAAGACCATGTCTGGGACAT
36754941 AGTATTAGCC
Statistics
Matches: 207, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
44 5 0.02
45 7 0.03
46 4 0.02
47 53 0.26
48 127 0.61
49 4 0.02
50 2 0.01
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGC
Found at i:36754977 original size:142 final size:143
Alignment explanation
Indices: 36754628--36754995 Score: 357
Period size: 144 Copynumber: 2.6 Consensus size: 143
36754618 TGATATGTGC
* * * * * * *
36754628 GCTAGTGTAAGACCATGACTGGGACATGGCGTC-GACCACATTATGAGAGCCAGTGTAAGACAAT
1 GCTAGCGTAAGACCAGGTCTGGGACATAGCATCAG-CCACATCATGAGAGCCAGTGTAAGACCAT
* * * * * * *
36754692 GTTTGGAACATGGCATCGGCAATGTTG-TGAGAGCCAATGTAAGACCATGTCTGGGACATGGCAT
65 GTCTGGGACATGACATC-GTATTG-AGACGAGAGCCAATGTAAGACCATGTCTGGGACATGGCAT
* * * * *
36754756 CGACGTTGATATGTAT
128 CGACATTGAGACGAAA
* * * * * *
36754772 GCTAGCGTAAGACCATGTCTGGGACATGGCGTCGGCCACATTATGAGAGTCAGTGTAAGACCATG
1 GCTAGCGTAAGACCAGGTCTGGGACATAGCATCAGCCACATCATGAGAGCCAGTGTAAGACCATG
* * * *
36754837 TCTGGGACATGGCATCGTATTGAGACGAGAGCCAGTGTAAGACCATGTTTGGGCCATGGCATCGA
66 TCTGGGACATGACATCGTATTGAGACGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGA
36754902 CATTGAGACGAAA
131 CATTGAGACGAAA
* * * * * *
36754915 GCT-GTGTAAGACCAGGTCTGGGACATAGTATTAGCCTCGA-CATGTGAGCCAGTGTATGACCAT
1 GCTAGCGTAAGACCAGGTCTGGGACATAGCATCAGCCAC-ATCATGAGAGCCAGTGTAAGACCAT
36754978 GTCTGGGACATGACATCG
65 GTCTGGGACATGACATCG
36754996 GTAATTCACC
Statistics
Matches: 190, Mismatches: 31, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
142 64 0.34
143 52 0.27
144 73 0.38
145 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (143 bp):
GCTAGCGTAAGACCAGGTCTGGGACATAGCATCAGCCACATCATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGACATCGTATTGAGACGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGA
CATTGAGACGAAA
Found at i:36756221 original size:20 final size:21
Alignment explanation
Indices: 36756183--36756222 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36756173 GTTAAGAAGA
*
36756183 CACACGGGTGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
36756204 CACACGGGCGTG-TGCCCTT
1 CACACGGGCGTGTTGCCCTT
36756223 GTCTACTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:36758337 original size:15 final size:15
Alignment explanation
Indices: 36758317--36758347 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36758307 AAATATGAAA
36758317 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
36758332 GATATGTTTTGTATT
1 GATATGTTTTGGATT
36758347 G
1 G
36758348 GATTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:36759345 original size:56 final size:56
Alignment explanation
Indices: 36759259--36759378 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36759249 ACAAGGGATG
36759259 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36759315 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36759371 ATGGGCAA
1 ATGGGCAA
36759379 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36760743 original size:40 final size:40
Alignment explanation
Indices: 36760505--36760729 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
36760495 TCGAATGATG
* * * *
36760505 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36760545 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36760585 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36760624 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36760664 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36760705 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36760730 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36760751 original size:119 final size:119
Alignment explanation
Indices: 36760505--36760762 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
36760495 TCGAATGATG
* *
36760505 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
36760570 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
36760624 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
36760687 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
36760744 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36760763 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:36767281 original size:56 final size:56
Alignment explanation
Indices: 36767195--36767314 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36767185 ACAAGGGATG
36767195 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36767251 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36767307 ATGGGCAA
1 ATGGGCAA
36767315 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36768526 original size:40 final size:40
Alignment explanation
Indices: 36768442--36768666 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
36768432 TCGAATGATG
* * * *
36768442 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36768482 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36768522 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36768561 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36768601 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36768642 -CCGGGATATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36768667 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36771705 original size:15 final size:15
Alignment explanation
Indices: 36771681--36771725 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
36771671 AAATAGCTAT
*
36771681 TTTTGT-TATATGTG
1 TTTTGTATATATATG
36771695 TTTTGTATATAATATG
1 TTTTGTATAT-ATATG
36771711 TTTTGATATATATAT
1 TTTTG-TATATATAT
36771726 ATTGGATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 6 0.22
15 3 0.11
16 13 0.48
17 5 0.19
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTTGTATATATATG
Found at i:36771727 original size:18 final size:17
Alignment explanation
Indices: 36771687--36771727 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
36771677 CTATTTTTGT
*
36771687 TATATGTGTTTTGTATA
1 TATATATGTTTTGTATA
36771704 TA-ATATGTTTTGATATA
1 TATATATGTTTTG-TATA
36771721 TATATAT
1 TATATAT
36771728 TGGATTATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 9 0.43
17 8 0.38
18 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (17 bp):
TATATATGTTTTGTATA
Found at i:36777332 original size:15 final size:15
Alignment explanation
Indices: 36777312--36777342 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36777302 AAATATGAAA
36777312 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
36777327 GATATGTTTTGTATT
1 GATATGTTTTGGATT
36777342 G
1 G
36777343 GAATTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:36778039 original size:43 final size:43
Alignment explanation
Indices: 36777990--36778102 Score: 174
Period size: 43 Copynumber: 2.6 Consensus size: 43
36777980 ATGTGTGCGA
36777990 GTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTACAT
1 GTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTACAT
* *
36778033 GTAAGACCATGTCTGGGATAGTGGCATCGATATGTGATTACAT
1 GTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTACAT
* *
36778076 GTAAGACCAC-GCCTGGGACATTGGCAT
1 GTAAGACC-CTGTCTGGGACAGTGGCAT
36778103 TGTACGATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
GTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTACAT
Found at i:36778888 original size:17 final size:18
Alignment explanation
Indices: 36778866--36778909 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
36778856 GTTGTTAATA
*
36778866 GGCTAAATTGTG-AAATG
1 GGCTAAATTGGGCAAATG
36778883 GGCTAAA-TGGGCTAAATG
1 GGCTAAATTGGGC-AAATG
36778901 GGCTAAATT
1 GGCTAAATT
36778910 CATGAGCTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 7 0.30
18 12 0.52
19 1 0.04
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (18 bp):
GGCTAAATTGGGCAAATG
Found at i:36778892 original size:9 final size:9
Alignment explanation
Indices: 36778878--36778908 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
36778868 CTAAATTGTG
36778878 AAATGGGCT
1 AAATGGGCT
36778887 AAATGGGCT
1 AAATGGGCT
36778896 AAATGGGCT
1 AAATGGGCT
36778905 AAAT
1 AAAT
36778909 TCATGAGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.10, G:0.29, T:0.23
Consensus pattern (9 bp):
AAATGGGCT
Done.