Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 117 of 332
Found at i:37839362 original size:50 final size:50
Alignment explanation
Indices: 37839229--37839362 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
37839219 CTGGTACGCA
* ** * *
37839229 TAGTAGCCTGCACATAGTACTACACATGCGAACC-AATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCG-ACCTAACCATCCGATACACG
* *** *
37839279 TAGTAGCTTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACG
37839329 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
37839363 CACAATAGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
49 3 0.04
50 66 0.96
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACG
Found at i:37842237 original size:24 final size:24
Alignment explanation
Indices: 37842210--37842257 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
37842200 AAGAATCTTC
37842210 GGTCTGAACGAGGTGGGGAATACT
1 GGTCTGAACGAGGTGGGGAATACT
**
37842234 GGTCTGGCCGAGGTGGGGAATACT
1 GGTCTGAACGAGGTGGGGAATACT
37842258 TGTCCGACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.44, T:0.21
Consensus pattern (24 bp):
GGTCTGAACGAGGTGGGGAATACT
Found at i:37846496 original size:21 final size:20
Alignment explanation
Indices: 37846468--37846506 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
37846458 CAAAACTTGT
37846468 ATAACTATCAACAAACATTC
1 ATAACTATCAACAAACATTC
*
37846488 ATAATCTATCACCAAACAT
1 ATAA-CTATCAACAAACAT
37846507 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
ATAACTATCAACAAACATTC
Found at i:37847805 original size:31 final size:29
Alignment explanation
Indices: 37847770--37847828 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
37847760 AATTGTATTT
*
37847770 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
37847801 TATTAAATTAAATTTAATGTTTATCTTA
1 TATTAAATTAAATTAAATGATTATCTTA
37847829 CAGATAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.40
30 5 0.20
31 10 0.40
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:37857603 original size:31 final size:31
Alignment explanation
Indices: 37857555--37857638 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
37857545 TTAGTCTTGA
*
37857555 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
37857585 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
37857616 CATATCATTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
37857639 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:37857835 original size:24 final size:25
Alignment explanation
Indices: 37857808--37857883 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 25
37857798 GCCTAGCCTC
*
37857808 TTTTAAT-AACTGGGGTAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
37857832 TTTTAATAAACTGGGGCAAAGTCC-
1 TTTTAATAAACTGGGGCAAAGCCCT
*** *
37857856 TTTCGGTAAACTGGGGCATAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
37857881 TTT
1 TTT
37857884 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 26 0.60
25 17 0.40
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:37858116 original size:27 final size:27
Alignment explanation
Indices: 37858086--37858281 Score: 241
Period size: 27 Copynumber: 7.3 Consensus size: 27
37858076 GGGGCAAAAT
* * *
37858086 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37858113 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
37858140 GGTATTTCTACCATACAAGGGCACTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37858167 TGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37858194 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37858221 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
37858248 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37858275 AGTAATT
1 GGTAATT
37858282 TTACAAATCG
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 139 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37858214 original size:81 final size:81
Alignment explanation
Indices: 37858087--37858281 Score: 275
Period size: 81 Copynumber: 2.4 Consensus size: 81
37858077 GGGCAAAATG
* * * * *
37858087 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
*
37858152 ATACAAGGG-CACTTCT
66 ATAC-AGGGTCACTTCA
*
37858168 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* * *
37858233 CTACAGGGTTATTTCA
66 ATACAGGGTCACTTCA
*
37858249 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATT
37858282 TTACAAATCG
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
80 4 0.04
81 98 0.96
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
ATACAGGGTCACTTCA
Found at i:37858296 original size:27 final size:27
Alignment explanation
Indices: 37858266--37858416 Score: 166
Period size: 27 Copynumber: 5.6 Consensus size: 27
37858256 TACCCTACAG
37858266 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
37858293 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
*
37858320 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
37858347 GGGTATTTGGGTAATTTTATAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
* * *
37858374 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
37858400 GGGTATTTTAGTAATTT
1 GGGTATTTCAGTAATTT
37858417 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.03
26 15 0.14
27 87 0.80
28 4 0.04
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:37858297 original size:81 final size:81
Alignment explanation
Indices: 37858087--37858308 Score: 250
Period size: 81 Copynumber: 2.7 Consensus size: 81
37858077 GGGCAAAATG
* * * * ** * *
37858087 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCGGTAATTCTACC
*
37858152 ATACAAGGGCACTTCT
66 ATACAAGGGCACTTCA
**
37858168 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCGGTAATTCTACC
* * *
37858233 CTAC-AGGGTTATTTCA
66 ATACAAGGG-CACTTCA
* * * *
37858249 GTAATTCTACCCTACAGGGGTATTTCAGTAATTTTA-CAAATCGAGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAG-GGGTATTTCGGTAATT
37858309 TTGCAAACTG
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 8 0.07
81 115 0.93
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCGGTAATTCTACC
ATACAAGGGCACTTCA
Found at i:37858300 original size:54 final size:54
Alignment explanation
Indices: 37858184--37858354 Score: 204
Period size: 54 Copynumber: 3.2 Consensus size: 54
37858174 CTACCCTACA
* * **
37858184 AGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC-CCTAC-
1 AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAAT-CG
*
37858237 AGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACAAATCG
1 AGGG-TATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAATCG
** ** *
37858292 AGGGTATTTCAGTAATT-TTGCAAACTGAGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTCTACCCTACAG-GGGTATTTCGGTAATTTTACAAATCG
37858346 AGGGTATTT
1 AGGGTATTT
37858355 GGGTAATTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
53 9 0.09
54 89 0.86
55 5 0.05
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.37
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAATCG
Found at i:37858351 original size:81 final size:80
Alignment explanation
Indices: 37858266--37858416 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 80
37858256 TACCCTACAG
*
37858266 GGGTATTTCAGTAATTTTACAAA-TCGAGGGTA-TTTCAGTAATTTTGCAAACTGAGGGTATTTC
1 GGGTATTTCAGTAATTTTACAAACT-GAGGGTACTTT-AGTAATTTTAC-AACTGAGGGTATTTC
*
37858329 GGTAATTTTACAAATCGA
63 AGTAATTTTACAAATCGA
** * * * *
37858347 GGGTATTTGGGTAATTTTATAAACTGAGGGTACTTTGGTAATTTTACAACTGGGGGTATTTTAGT
1 GGGTATTTCAGTAATTTTACAAACTGAGGGTACTTTAGTAATTTTACAACTGAGGGTATTTCAGT
37858412 AATTT
66 AATTT
37858417 GGTAAACTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
80 20 0.33
81 36 0.60
82 4 0.07
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACAAACTGAGGGTACTTTAGTAATTTTACAACTGAGGGTATTTCAGT
AATTTTACAAATCGA
Found at i:37858361 original size:54 final size:54
Alignment explanation
Indices: 37858266--37858416 Score: 207
Period size: 54 Copynumber: 2.8 Consensus size: 54
37858256 TACCCTACAG
* *
37858266 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGA
** *
37858320 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTGGGTAATTTTATAAACTGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGA
* * *
37858374 GGGTACTTT-GGTAATTTTACAACT-GGGGGTATTTTAGTAATTT
1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
37858417 GGTAAACTAA
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 16 0.18
54 68 0.78
55 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGA
Found at i:37860693 original size:31 final size:31
Alignment explanation
Indices: 37860658--37860728 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
37860648 TTACTGGGTT
37860658 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
* *
37860689 GAAGCCTTTTCATAAATCATATCATTGGGCT
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
37860720 GAAGCCTTT
1 GAAGCCTTT
37860729 ACTGTAAACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTGGGCC
Found at i:37860969 original size:24 final size:23
Alignment explanation
Indices: 37860936--37861017 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
37860926 CTGGAGGTCT
*
37860936 AGCCTCTTTTAATAACTGGGGCAA
1 AGCC-CTTTTTATAACTGGGGCAA
37860960 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCCTTTTT-AT-AACTGGGGCAA
* * *
37860985 AGTCCTTTCGGTA-AACTGGGGCAT
1 AGCCCTTT--TTATAACTGGGGCAA
37861009 AGCCCTTTT
1 AGCCCTTTT
37861018 AGCACTTCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
23 5 0.10
24 23 0.48
25 18 0.38
26 1 0.02
27 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (23 bp):
AGCCCTTTTTATAACTGGGGCAA
Found at i:37860977 original size:25 final size:25
Alignment explanation
Indices: 37860949--37861017 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
37860939 CTCTTTTAAT
*
37860949 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37860974 AACTGGGGCAAAGTCC-TTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
37860998 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37861018 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
24 20 0.53
25 18 0.47
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37861435 original size:27 final size:27
Alignment explanation
Indices: 37861220--37861442 Score: 286
Period size: 27 Copynumber: 8.3 Consensus size: 27
37861210 GAGGCAAAAT
* *
37861220 GGTAATTTTACCCCACAGGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
37861247 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
37861274 GGTATTTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
37861301 TGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
37861328 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
37861355 GGTAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
37861382 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
37861409 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
37861436 AGTAATT
1 GGTAATT
37861443 TTGCAAACTG
Statistics
Matches: 174, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 2 0.01
27 172 0.99
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:37861457 original size:27 final size:27
Alignment explanation
Indices: 37861427--37861603 Score: 157
Period size: 27 Copynumber: 6.6 Consensus size: 27
37861417 TACCCTACAG
* *
37861427 GGGTATTTCAGTAATTTTGCAAACTGA
1 GGGTATTTTAGTAATTTTACAAACTGA
*
37861454 GGGTATTTTGGTAATTTTACAAA-TCGA
1 GGGTATTTTAGTAATTTTACAAACT-GA
* *
37861481 AGGTATTTTAGTAATTTTACAATC-GA
1 GGGTATTTTAGTAATTTTACAAACTGA
* * *
37861507 CGGTA-TTTCGATATTTTTACAAA-TCGA
1 GGGTATTTTAG-TAATTTTACAAACT-GA
** * *
37861534 GGGTATTTGGGTAATTTTATAAATTGA
1 GGGTATTTTAGTAATTTTACAAACTGA
* * *
37861561 GGGTACTTTGGTAATTTTAC-AACTGG
1 GGGTATTTTAGTAATTTTACAAACTGA
37861587 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
37861604 GGTAAACTAA
Statistics
Matches: 121, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
25 4 0.03
26 36 0.30
27 77 0.64
28 4 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTGA
Found at i:37861461 original size:81 final size:79
Alignment explanation
Indices: 37861219--37861469 Score: 267
Period size: 81 Copynumber: 3.1 Consensus size: 79
37861209 AGAGGCAAAA
* * * * *
37861219 TGGTAATTTTACCCCACAGGGGTATCTTGGTAATTCTACCCTACAAGGGTATTTTGGT-ATTTCT
1 TGGTAATTCTACCCTACAGGGGTAT-TTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTT-T
*
37861283 ACCATAC-AAGGGTATTT
64 --CAAACTAAGGGTATTT
* *
37861300 CT-GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCT
1 -TGGTAATTCTACCCTACAGGGGTA-TTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTT
**
37861364 -ACCCTACAGGGTTATTT
64 CAAACTA-AGGG-TATTT
* *
37861381 TGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTG
1 TGGTAATTCTACCCTACAGGGGTATTT-AGTAATTCTACCCTACAGGGGTATTTCGGTAATTTT-
*
37861446 CAAACTGAGGGTATTT
64 CAAACTAAGGGTATTT
37861462 TGGTAATT
1 TGGTAATT
37861470 TTACAAATCG
Statistics
Matches: 144, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
78 2 0.01
79 1 0.01
80 8 0.06
81 121 0.84
82 9 0.06
83 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (79 bp):
TGGTAATTCTACCCTACAGGGGTATTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTCA
AACTAAGGGTATTT
Found at i:37861468 original size:54 final size:53
Alignment explanation
Indices: 37861238--37861469 Score: 227
Period size: 54 Copynumber: 4.3 Consensus size: 53
37861228 TACCCCACAG
* * * *
37861238 GGGTATCTTGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCTAC-CATACAA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACAC-TA-AA
* *
37861292 GGGTATTTCT-GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTT-TGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACACTA-AA
* * * * *
37861346 GGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTGGTAATTCTACCCTACA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACACTAAA
** * * * *
37861399 GGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTGCAAACT-GA
1 GGG-TATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCT--ACACTAAA
37861454 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
37861470 TTACAAATCG
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.02
54 139 0.92
55 6 0.04
56 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (53 bp):
GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACACTAAA
Found at i:37861488 original size:81 final size:80
Alignment explanation
Indices: 37861239--37861496 Score: 204
Period size: 81 Copynumber: 3.2 Consensus size: 80
37861229 ACCCCACAGG
* * * ** * *
37861239 GGTATCTTGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCT-ACCATACAAGGG-TATTTCT
1 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAAC-TAC-AGGGTTATTT-T
** *
37861302 -GTAATTCTACCCTACAGG
63 GGTAATTCTACAATACA-A
* * **
37861320 GGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTGGT
1 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAACTACAGGGTTATTTTGGT
** *
37861385 AATTCTACCCTACAG
66 AATTCTACAATACAA
* * *
37861400 GGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTGCAAACT-GAGGG-TATTTT
1 GG-TATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCT--AAACTACAGGGTTATTTT
*
37861463 GGTAATTTTACAA-ATCGAA
63 GGTAATTCTACAATA-C-AA
37861482 GGTATTTTAGTAATT
1 GGTATTTTAGTAATT
37861497 TTACAATCGA
Statistics
Matches: 150, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
80 9 0.06
81 129 0.86
82 9 0.06
83 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (80 bp):
GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAACTACAGGGTTATTTTGGT
AATTCTACAATACAA
Found at i:37861591 original size:53 final size:52
Alignment explanation
Indices: 37861427--37861603 Score: 185
Period size: 53 Copynumber: 3.3 Consensus size: 52
37861417 TACCCTACAG
* * *
37861427 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTTAGTAATTTT-AAAATTGAGGGTA-TTTGGTAATTTTACAAATCGA
* * * * * *
37861481 AGGTATTTTAGTAATTTTACAATCGACGGTATTTCGATATTTTTACAAATCGA
1 GGGTATTTTAGTAATTTTAAAATTGAGGGTATTT-GGTAATTTTACAAATCGA
** * *
37861534 GGGTATTTGGGTAATTTTATAAATTGAGGGTACTTTGGTAATTTTACAACT-GG
1 GGGTATTTTAGTAATTTTA-AAATTGAGGGTA-TTTGGTAATTTTACAAATCGA
37861587 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
37861604 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
52 3 0.03
53 56 0.57
54 37 0.37
55 3 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (52 bp):
GGGTATTTTAGTAATTTTAAAATTGAGGGTATTTGGTAATTTTACAAATCGA
Found at i:37861592 original size:80 final size:80
Alignment explanation
Indices: 37861426--37861603 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
37861416 CTACCCTACA
* * *
37861426 GGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTTA
1 GGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTGGGTAATTTTACAAATCGAAGGTACTTTA
37861491 GTAATTTTACAATCG
66 GTAATTTTACAATCG
** * * * *
37861506 ACGGTATTTC-GATATTTTTACAAA-TCGAGGGTATTTGGGTAATTTTATAAATTGAGGGTACTT
1 GGGGTATTTCAG-TAATTTTACAAACT-GAGGGTATTTGGGTAATTTTACAAATCGAAGGTACTT
*
37861569 TGGTAATTTTACAA-CTG
64 TAGTAATTTTACAATC-G
*
37861586 GGGGTATTTTAGTAATTT
1 GGGGTATTTCAGTAATTT
37861604 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
79 3 0.04
80 76 0.95
81 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (80 bp):
GGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTGGGTAATTTTACAAATCGAAGGTACTTTA
GTAATTTTACAATCG
Found at i:37865167 original size:27 final size:27
Alignment explanation
Indices: 37865135--37865194 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
37865125 ATACATCTCA
37865135 TAGGGGCATATCAGTCATTTTA-CAAT
1 TAGGGGCATATCAGTCATTTTATCAAT
* *
37865161 GTAGGGGCATTTTAGTCATTTTATCAAT
1 -TAGGGGCATATCAGTCATTTTATCAAT
37865189 TAGGGG
1 TAGGGG
37865195 TTCAGGTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.37
Consensus pattern (27 bp):
TAGGGGCATATCAGTCATTTTATCAAT
Found at i:37866806 original size:28 final size:28
Alignment explanation
Indices: 37866745--37866840 Score: 115
Period size: 28 Copynumber: 3.4 Consensus size: 28
37866735 TATTAAGTCC
* *
37866745 CACACTCAGTGCTATATAATC-AACTAG
1 CACACTTAGTGCTATATAATCAAACTCG
37866772 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * *
37866800 CACACTTAGTGCTGTACAATTTAAAC-CTG
1 CACACTTAGTGCTATATAA-TCAAACTC-G
37866829 CACACTTAGTGC
1 CACACTTAGTGC
37866841 CAATCTAATG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
27 20 0.33
28 23 0.38
29 18 0.30
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:37875048 original size:29 final size:27
Alignment explanation
Indices: 37875030--37875099 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37875020 ATATTAAGTC
37875030 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37875057 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
37875085 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
37875100 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37875093 original size:28 final size:28
Alignment explanation
Indices: 37875030--37875127 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37875020 ATATTAAGTC
*
37875030 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37875057 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37875085 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37875114 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37875128 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37878505 original size:13 final size:13
Alignment explanation
Indices: 37878487--37878521 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
37878477 CGGCTAACTT
37878487 ACATAATTAAATA
1 ACATAATTAAATA
37878500 ACATAATTAAATA
1 ACATAATTAAATA
*
37878513 AAATAATTA
1 ACATAATTA
37878522 TTCATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:37878746 original size:10 final size:9
Alignment explanation
Indices: 37878730--37878790 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 9
37878720 AAATGAAGAA
37878730 TAAATGAGC
1 TAAATGAGC
37878739 TGAAATGAGC
1 T-AAATGAGC
37878749 TAAATTCGAGC
1 TAAA-T-GAGC
**
37878760 TCAAGCGAGC
1 T-AAATGAGC
37878770 TAAATCGAGC
1 TAAAT-GAGC
37878780 TCAAATGAGC
1 T-AAATGAGC
37878790 T
1 T
37878791 GATGGAAGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
9 6 0.14
10 25 0.60
11 9 0.21
12 2 0.05
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (9 bp):
TAAATGAGC
Found at i:37878789 original size:20 final size:20
Alignment explanation
Indices: 37878730--37878790 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
37878720 AAATGAAGAA
*
37878730 TAAAT-GAGCTGAAATGAGC
1 TAAATCGAGCTCAAATGAGC
**
37878749 TAAATTCGAGCTCAAGCGAGC
1 TAAA-TCGAGCTCAAATGAGC
37878770 TAAATCGAGCTCAAATGAGC
1 TAAATCGAGCTCAAATGAGC
37878790 T
1 T
37878791 GATGGAAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 4 0.11
20 16 0.46
21 15 0.43
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (20 bp):
TAAATCGAGCTCAAATGAGC
Found at i:37910436 original size:46 final size:47
Alignment explanation
Indices: 37910375--37910553 Score: 190
Period size: 46 Copynumber: 3.9 Consensus size: 47
37910365 AACCCGAGCA
*
37910375 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGCTCGAG-CG
1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACG
* *
37910421 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG
1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GA-GAC--G
* * * * *
37910472 TT-ACAT--TTCA-CGAACTCGGACTCAACTCAACGAGTTCG-GACG
1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACG
* *
37910514 TTCGCATCCATAAGTGAAATCAGACTCAACTCAACAAGTT
1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTT
37910554 TAGATGCCCA
Statistics
Matches: 110, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACG
Found at i:37910560 original size:93 final size:93
Alignment explanation
Indices: 37910390--37910561 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
37910380 ATCCATAAGT
* *
37910390 GAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
* *
37910455 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCAGATGCCTAGTTACATTTCAC
* *
37910483 GAACTCGGACTCAACTCAACGAGTTCG-GACGTTCGCATCCATAAGTGAAATCAGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGAG-CGTTCGCATCCATAAGTGAAATCAGACTCAACTCA
*
37910547 ACAAGTTTAGATGCC
65 ACAAGTTCAGATGCC
37910562 CAAATATCCA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
CAAGTTCAGATGCCTAGTTACATTTCAC
Found at i:37913936 original size:42 final size:42
Alignment explanation
Indices: 37913879--37914033 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 42
37913869 CTAAGACTAT
* *
37913879 GTGTAAGACCTTATCTGGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCTATAAGAGACTTC
* *
37913921 GTGTAAGACCATATCTAGGATATGGCATCGATAAGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCTATAAGAGACTTC
* * * *
37913963 GTGTAAGACCATAGCTGGGCTATTGGCAT-TGATACGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCT-ATAAGAGACT-TC
* *
37914006 ATGTAAGACCATATATGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
37914034 TGGTATGGTA
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 64 0.67
43 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCTATAAGAGACTTC
Found at i:37914231 original size:15 final size:16
Alignment explanation
Indices: 37914205--37914234 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37914195 ATGAACCCTC
37914205 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
37914221 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
37914235 ACAAGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Found at i:37921217 original size:11 final size:11
Alignment explanation
Indices: 37921197--37921227 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
37921187 ATAAATAACT
37921197 AAAA-GAAAAG
1 AAAATGAAAAG
37921207 AAAATGAAAAG
1 AAAATGAAAAG
37921218 AAAATGAAAA
1 AAAATGAAAA
37921228 TATTAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (11 bp):
AAAATGAAAAG
Found at i:37921388 original size:11 final size:11
Alignment explanation
Indices: 37921367--37921398 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
37921357 AAAAATACAC
37921367 AAATCAAAAATA
1 AAAT-AAAAATA
37921379 AAATAAAAATA
1 AAATAAAAATA
37921390 AAATAAAAA
1 AAATAAAAA
37921399 GGATAATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:37921474 original size:3 final size:3
Alignment explanation
Indices: 37921466--37921555 Score: 62
Period size: 3 Copynumber: 30.0 Consensus size: 3
37921456 AAATAAAACA
* *
37921466 AAT AAT AAT AGA- AAT AAT AAT AAT GAGAC AAT AAT AAT AA- AAT AAAG
1 AAT AAT AAT A-AT AAT AAT AAT AAT -A-AT AAT AAT AAT AAT AAT -AAT
* * * *
37921513 AAT AAT AA- CAT CAT CAT AAT AAT AAA AAT AAT AA- AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37921556 GTTGAAATTT
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
2 6 0.08
3 59 0.83
4 5 0.07
5 1 0.01
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:37921499 original size:29 final size:29
Alignment explanation
Indices: 37921466--37921551 Score: 86
Period size: 29 Copynumber: 2.9 Consensus size: 29
37921456 AAATAAAACA
* *
37921466 AATAATAATAGAAATAATAATAATGAGA-C
1 AATAATAATA-AAATAATAATAATAACATC
*
37921495 AATAATAATAAAATAAAGAATAATAACATC
1 AATAATAATAAAAT-AATAATAATAACATC
37921525 ATCATAATAATAAAAATAATAA-AATAA
1 A--ATAATAAT-AAAATAATAATAATAA
37921552 TAATGTTGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
28 4 0.08
29 20 0.42
30 2 0.04
31 5 0.10
32 12 0.25
33 5 0.10
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (29 bp):
AATAATAATAAAATAATAATAATAACATC
Found at i:37922239 original size:11 final size:11
Alignment explanation
Indices: 37922225--37922249 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37922215 ATAATAGATT
37922225 AAAAATAAAGA
1 AAAAATAAAGA
37922236 AAAAATAAAGA
1 AAAAATAAAGA
37922247 AAA
1 AAA
37922250 TAAAAGACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAATAAAGA
Found at i:37923041 original size:44 final size:44
Alignment explanation
Indices: 37922878--37923125 Score: 236
Period size: 44 Copynumber: 5.7 Consensus size: 44
37922868 TTTATTCCAA
* * * *
37922878 TCCACTGTATCTTCAGGGAGATAAGGTTTACTATCTTCAATCTAC
1 TCCACTGTAACTTCAGGGAGATAAGATTT-GTAACTTCAATCTAC
* * * * * **
37922923 TCCACTGTAGCTTCAGGGAGTTGAGATTCGTAACTTCAACCCGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC
*
37922967 TCCACTGTAACTTCAGGGAGATAAGGTTTGTAACTTCAATCTAC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC
** * ** *
37923011 TCCACTGTGTCTTTAGGGAGATAAGATTTGT--GGT-AATCTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC
* * * *
37923052 TCCTCTGCAACTTCAGAGG-TATGAGATTTGTAACTTCAATCTAC
1 TCCACTGTAACTTCAG-GGAGATAAGATTTGTAACTTCAATCTAC
*
37923096 TCCACTG-AACTTAAGGGAGATAAGATTTGT
1 TCCACTGTAACTTCAGGGAGATAAGATTTGT
37923126 TATTTTTGAC
Statistics
Matches: 159, Mismatches: 39, Indels: 12
0.76 0.19 0.06
Matches are distributed among these distances:
41 27 0.17
42 5 0.03
43 18 0.11
44 85 0.53
45 24 0.15
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC
Found at i:37923634 original size:181 final size:180
Alignment explanation
Indices: 37923227--37923886 Score: 763
Period size: 181 Copynumber: 3.6 Consensus size: 180
37923217 TTGTAACTTG
* * * * ** *
37923227 TAGCTTAAATATGTTCCATTGCAACTTCAGGGAAATAAGA-TCTGCTATCTTCAACCTGCTCTAC
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTC-GCTATCTTCAGTCTGCTCCAC
* * * * * * *
37923291 TGCAACTTTAGGGAGATAAG--GTTAATGGCTTTAATCTACTCGACTACAACTTCAGGGAGATAA
65 TGCAACTTCAGGGAGATAAGACTTTAA---CTTCAACCTGCTCCACTACTACTTCAGGGAGATAA
* * * * * *
37923354 GATTCGCCATGGTAGACTTGATCTGACCTACTGCAACTTCAGAG-GTATAGGAT-TTGTGACTTA
127 GGTT-----TGCT--A--TGATCTGATCTACTGCAACTTCAGAGAG-ATAAGATCTT-TTATTTA
37923417 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT
* * * *
37923482 GTAACTTCAGGGAGATAAGACTTTAACTTTAACCTGTTCCACTACTACTTCAGGGAGATAATGTT
66 GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTACTACTTCAGGGAGATAAGGTT
*
37923547 TGCTATGATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTA
131 TGCTATGATCTGATCTACTGCAACTTCAGAGAGATAAGATCT-TTTATTTA
* * * *
37923598 TAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCTACT
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT
* * * *
37923663 ACAACTTTAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTGCTACTTTAGGGAGATAAGGTT
66 GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTACTACTTCAGGGAGATAAGGTT
* * *
37923728 TGCTATGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTTTATTTG
131 TGCTATGATCTGATCTACTGCAACTTCAGAGAGATAAGATCT-TTTATTTA
* * *
37923779 TATCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTCCACT
1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT
* *
37923844 GCAACTTCAGAGAGATGAGACTTTAACTTCAACCTGCTCCACT
66 GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACT
37923887 GCAACTCCAA
Statistics
Matches: 414, Mismatches: 50, Indels: 21
0.85 0.10 0.04
Matches are distributed among these distances:
180 30 0.07
181 269 0.65
182 2 0.00
184 3 0.01
189 32 0.08
190 72 0.17
191 2 0.00
192 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (180 bp):
TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT
GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTACTACTTCAGGGAGATAAGGTT
TGCTATGATCTGATCTACTGCAACTTCAGAGAGATAAGATCTTTTATTTA
Found at i:37923713 original size:43 final size:43
Alignment explanation
Indices: 37923612--37923892 Score: 190
Period size: 43 Copynumber: 6.3 Consensus size: 43
37923602 TTTAATCTAT
* * * * *
37923612 TCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTCAGTCTGC
1 TCCACTGCAACTTTAGGGAGATAAGACTT--TAACTTCAATCTGC
* * *
37923657 TCTACTACAACTTTAGGGAGATAAGACTTTAACTTCAACCTGC
1 TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAATCTGC
* * * *
37923700 TCCACTGCTACTTTAGGGAGATAAG-GTTT-GCTAT-GATCTGC
1 TCCACTGCAACTTTAGGGAGATAAGACTTTAACT-TCAATCTGC
* * * *
37923741 TCTACTGCAACTTTAGAGAGATAAGATCTGTTTATTTGTATCTTTAATCTGT
1 TCCACTGCAACTTTAGGGAGATAAGA-C--TTTA-----A-CTTCAATCTGC
* * * * *
37923793 TCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGC
1 TCCACTGCAACTTTAGGGAGATAAGA--CTTTAACTTCAATCTGC
* * * *
37923838 TCCACTGCAACTTCAGAGAGATGAGACTTTAACTTCAACCTGC
1 TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAATCTGC
37923881 TCCACTGCAACT
1 TCCACTGCAACT
37923893 CCAAAGAGAT
Statistics
Matches: 184, Mismatches: 38, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
41 29 0.16
42 4 0.02
43 58 0.32
45 58 0.32
51 4 0.02
52 29 0.16
53 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (43 bp):
TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAATCTGC
Found at i:37923843 original size:45 final size:45
Alignment explanation
Indices: 37923424--37923910 Score: 180
Period size: 43 Copynumber: 10.8 Consensus size: 45
37923414 TTATAGCTTT
* * * * *
37923424 AATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * * * * *
37923469 AGTCTGCTCCACTGTAACTTCAGGGAGATAAGA--CTTTAACTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * * * *
37923512 AACCTGTTCCACTACTACTTCAGGGAGAT-A-A-T-GTT-TGCTAT-
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTAT-CT-TC
* * * ** *
37923553 GATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAG----A-TTCGTTAT--CTTC
** * * * * * *
37923605 AATCTATTCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * * * * * *
37923650 AGTCTGCTCTACTACAACTTTAGGGAGATAAGA--CTTTAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * * * * * *
37923693 AACCTGCTCCACTGCTACTTTAGGGAGATAAGGTTTGCTA---T-
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * * *
37923734 GATCTGCTCTACTGCAACTTTAGAGAGATAAGA-TCTGTTTATTTGTATCTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTC-G------T-TATCTTC
* * *
37923786 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * * *
37923831 AGTCTGCTCCACTGCAACTTCAGAGAGATGAGA--CTTTAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
* * *
37923874 AACCTGCTCCACTGCAACTCCAAAGAGATAAGATTCG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCG
37923911 CCATTATGAC
Statistics
Matches: 327, Mismatches: 83, Indels: 64
0.69 0.18 0.14
Matches are distributed among these distances:
40 1 0.00
41 56 0.17
42 4 0.01
43 98 0.30
45 94 0.29
46 1 0.00
47 6 0.02
48 3 0.01
49 1 0.00
50 2 0.01
51 3 0.01
52 56 0.17
53 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC
Found at i:37925001 original size:139 final size:139
Alignment explanation
Indices: 37924754--37925113 Score: 555
Period size: 139 Copynumber: 2.6 Consensus size: 139
37924744 TATCTTCAAT
** * * **
37924754 CAAAATTTGAGTTGCCCTTTTTAGGTTTTCAACTC-AAAACCCCTTTGGTCTCAAGGTGCCCTTT
1 CAAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTTT
*
37924818 GCGGGTTTTGGCCTTGGCCTCTCTATGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCCC
66 GCGGG-TTTGGCCTTGGCCTCTCTAAGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCCC
37924883 ATTCTTTGG-
130 ATTCTTTGGA
* *
37924892 CTAAAATTTGAGCCGCCCTTTTCGGGTTTTCAACTCAAAAACTCTTTTGGTCTCAATATGCCCTT
1 C-AAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTT
37924957 TGCGGGTGTTGGCCTTGGCCTCTCTAAG-TTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCC
65 TGCGGGT-TTGGCCTTGGCCTCTCTAAGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCC
37925021 CATTCTTTGGA
129 CATTCTTTGGA
* *
37925032 CAAAATTTGAGCCACCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATACGCCCTTT
1 CAAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTTT
* *
37925097 GTGGGTTTTGCCTTGGC
66 GCGGGTTTGGCCTTGGC
37925114 TCCTCCTTTT
Statistics
Matches: 203, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
138 11 0.05
139 142 0.70
140 50 0.25
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (139 bp):
CAAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTTT
GCGGGTTTGGCCTTGGCCTCTCTAAGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCCCA
TTCTTTGGA
Found at i:37925133 original size:1 final size:1
Alignment explanation
Indices: 37925127--37925189 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
37925117 TCCTTTTCTA
* * * * * * * *
37925127 TTTTTTTTCTTTTTCTTTTTTCTTTTCTTTTTTTTTCTTTTTCTTCTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
37925190 AAAGAGTGAA
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (1 bp):
T
Found at i:37925141 original size:6 final size:6
Alignment explanation
Indices: 37925120--37925187 Score: 63
Period size: 6 Copynumber: 11.7 Consensus size: 6
37925110 TGGCTCCTCC
*
37925120 TTTTCT ATTT-T TTTTCT TTTTCT TTTT-T CTTTTC- TTTT-T TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT TTTTCT TTTTCT
* *
37925165 TTTTCT TCTTTTT TTTTGT TTTT
1 TTTTCT T-TTTCT TTTTCT TTTT
37925188 TTAAAGAGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
5 13 0.25
6 34 0.65
7 5 0.10
ACGTcount: A:0.01, C:0.12, G:0.01, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:37925144 original size:22 final size:22
Alignment explanation
Indices: 37925119--37925167 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
37925109 TTGGCTCCTC
37925119 CTTTTCTATTTT-TTTTCTTTTT
1 CTTTTCTATTTTCTTTT-TTTTT
* *
37925141 CTTTTTTCTTTTCTTTTTTTTT
1 CTTTTCTATTTTCTTTTTTTTT
37925163 CTTTT
1 CTTTT
37925168 TCTTCTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (22 bp):
CTTTTCTATTTTCTTTTTTTTT
Found at i:37925159 original size:28 final size:29
Alignment explanation
Indices: 37925119--37925189 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 29
37925109 TTGGCTCCTC
37925119 CTTTTCTATTTTTTTTCTTTTTCTT-TTTT
1 CTTTTCT-TTTTTTTTCTTTTTCTTCTTTT
37925148 CTTTTCTTTTTTTTTCTTTTTCTTCTTTT
1 CTTTTCTTTTTTTTTCTTTTTCTTCTTTT
* *
37925177 TTTTTGTTTTTTT
1 CTTTTCTTTTTTT
37925190 AAAGAGTGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 17 0.44
29 22 0.56
ACGTcount: A:0.01, C:0.13, G:0.01, T:0.85
Consensus pattern (29 bp):
CTTTTCTTTTTTTTTCTTTTTCTTCTTTT
Found at i:37925179 original size:19 final size:17
Alignment explanation
Indices: 37925127--37925189 Score: 81
Period size: 18 Copynumber: 3.5 Consensus size: 17
37925117 TCCTTTTCTA
37925127 TTTTTTTTCTTTTTCTTT
1 TTTTTTTTCTTTTT-TTT
*
37925145 TTTCTTTTCTTTTTTTT
1 TTTTTTTTCTTTTTTTT
37925162 TCTTTTTCTTCTTTTTTTT
1 T-TTTTT-TTCTTTTTTTT
37925181 TGTTTTTTT
1 T-TTTTTTT
37925190 AAAGAGTGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.10
18 19 0.47
19 17 0.43
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (17 bp):
TTTTTTTTCTTTTTTTT
Found at i:37927502 original size:24 final size:24
Alignment explanation
Indices: 37927474--37927522 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
37927464 TCAGGGTTGA
37927474 TCTTCTAGCACTTTCCCTTGCATC
1 TCTTCTAGCACTTTCCCTTGCATC
* *
37927498 TCTTCTGGCACTTTGCCTTGCATC
1 TCTTCTAGCACTTTCCCTTGCATC
37927522 T
1 T
37927523 ATCTTCCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.35, G:0.12, T:0.43
Consensus pattern (24 bp):
TCTTCTAGCACTTTCCCTTGCATC
Found at i:37930696 original size:22 final size:21
Alignment explanation
Indices: 37930642--37930696 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
37930632 AAGCTAATTG
37930642 TAAAAATAAATAAATAAATAAA
1 TAAAAA-AAATAAATAAATAAA
37930664 TAAAAGAAAATAAA-AATATTAAA
1 TAAAA-AAAATAAATAA-A-TAAA
*
37930687 TAAAACAAAT
1 TAAAAAAAAT
37930697 TAAGAAATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 2 0.07
22 17 0.59
23 10 0.34
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAAAAAATAAATAAATAAA
Found at i:37930807 original size:4 final size:4
Alignment explanation
Indices: 37930798--37930839 Score: 59
Period size: 4 Copynumber: 10.5 Consensus size: 4
37930788 ATGAAATGAC
*
37930798 AATA AATA AACA AATCA AA-A AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AA
37930840 AAAGATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 28 0.82
5 3 0.09
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (4 bp):
AATA
Found at i:37930907 original size:3 final size:3
Alignment explanation
Indices: 37930899--37930995 Score: 108
Period size: 3 Copynumber: 32.0 Consensus size: 3
37930889 AAACAAATGA
*
37930899 AAT AAT AAT AAT AAT AAT AAT GAGAC AAT AAT AAT AA- AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -A-AT AAT AAT AAT AAT AAT -AAT AAT
* * * *
37930946 AAT AA- CAT AAT AAT AAG AAT AAT AAT ACT GAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37930993 AAT
1 AAT
37930996 GTTGAAATTA
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
2 3 0.04
3 70 0.89
4 5 0.06
5 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:37936574 original size:43 final size:42
Alignment explanation
Indices: 37936464--37936574 Score: 102
Period size: 43 Copynumber: 2.6 Consensus size: 42
37936454 GGTTTATGTA
* * * * *
37936464 TAAGACCATGTCTAGGACATCGGCATCGTATTTGATTTCATG
1 TAAGACCACGTCTGGGACGTCGGCATCGTATATGATTACATG
* *
37936506 TAAGACC-CTGTCTGGGATAG-AGGCATCG-ATAATGAGTTACATG
1 TAAGACCAC-GTCTGGGA-CGTCGGCATCGTAT-ATGA-TTACATG
37936549 TAAGACCACGTCTGGGACGTCGGCAT
1 TAAGACCACGTCTGGGACGTCGGCAT
37936575 TGTACTTGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.04
42 25 0.46
43 26 0.48
44 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACGTCGGCATCGTATATGATTACATG
Found at i:37939101 original size:39 final size:40
Alignment explanation
Indices: 37938950--37939164 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
37938940 AAGCCAAGTA
* * * *
37938950 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37938989 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37939029 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37939069 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37939108 CCTTC-GGACTTAGCCCGGA-ACTAGTCACTAG-GCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37939146 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37939165 TTATCATCCA
Statistics
Matches: 161, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
38 23 0.14
39 62 0.39
40 76 0.47
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37939108 original size:79 final size:78
Alignment explanation
Indices: 37938950--37939163 Score: 283
Period size: 79 Copynumber: 2.7 Consensus size: 78
37938940 AAGCCAAGTA
* * * * *
37938950 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCC-GATATAG
*
37939014 TAACTCGCACCAATG
64 TAACTCGCACAAATG
37939029 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
37939094 AACTCGCACAAATG
65 AACTCGCACAAATG
* *
37939108 CCTTC-GGACTTAGCCCGGA-ACTAGTCACTAG-GCAAATGCCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG
37939164 GTTATCATCC
Statistics
Matches: 123, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
77 25 0.20
78 22 0.18
79 39 0.32
80 37 0.30
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGTA
ACTCGCACAAATG
Found at i:37947085 original size:40 final size:40
Alignment explanation
Indices: 37947015--37947232 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
37947005 AAGCCAAGTA
* * * * *
37947015 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37947054 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37947094 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37947134 CCTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
37947174 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37947214 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37947233 TTATCATCCA
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37953368 original size:14 final size:14
Alignment explanation
Indices: 37953333--37953370 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
37953323 TTTTCATTCA
*
37953333 TTCTTTTA-TTTCT
1 TTCTTTTATTTTAT
37953346 TTCTTTTATTTTAT
1 TTCTTTTATTTTAT
*
37953360 TTGTTTTATTT
1 TTCTTTTATTT
37953371 AATTACTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.79
Consensus pattern (14 bp):
TTCTTTTATTTTAT
Found at i:37958908 original size:47 final size:47
Alignment explanation
Indices: 37958846--37959518 Score: 1144
Period size: 47 Copynumber: 14.4 Consensus size: 47
37958836 TTCAGCCAAG
37958846 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
37958893 AAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37958939 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37958986 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
37959033 AAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
37959078 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
37959125 AAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
37959174 AAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37959220 AAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37959266 AAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37959312 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37959359 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
37959406 AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * * * * * *
37959452 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
37959499 AAGTGCATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
37959519 TCCCGAAGGG
Statistics
Matches: 600, Mismatches: 18, Indels: 16
0.95 0.03 0.03
Matches are distributed among these distances:
45 56 0.09
46 200 0.33
47 298 0.50
49 46 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:37958948 original size:93 final size:94
Alignment explanation
Indices: 37958846--37959518 Score: 1144
Period size: 93 Copynumber: 7.2 Consensus size: 94
37958836 TTCAGCCAAG
*
37958846 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
37958911 AGGCCTAAT-GCCGATGTGATGAATGTGA
66 AGGCCTAATGGCCGATGTGATGAATGTGA
37958939 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
37959004 AGGCCTAATGGCCGATGTGATGAATGTGA
66 AGGCCTAATGGCCGATGTGATGAATGTGA
* *
37959033 AAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
37959096 AGGCCTAATAGCCGATGTGATGAATGTGA
66 AGGCCTAATGGCCGATGTGATGAATGTGA
* *
37959125 AAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 AAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37959190 TAAGGCCTAAT-GCCGATGTGATGAATGTGA
64 TAAGGCCTAATGGCCGATGTGATGAATGTGA
37959220 AAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGT-ATA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
37959283 AGGCCTAATGGCCGATGTGATGAATGTGA
66 AGGCCTAATGGCCGATGTGATGAATGTGA
37959312 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
37959377 AGGCCTAATGGCCGATGTGATGAATGTGA
66 AGGCCTAATGGCCGATGTGATGAATGTGA
*
37959406 AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * *
37959470 GGGCCGAGTGGCCAACGTGATGGATGTGA
66 AGGCCTAATGGCCGATGTGATGAATGTGA
* *
37959499 AAGTGCATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
37959519 TCCCGAAGGG
Statistics
Matches: 558, Mismatches: 14, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
91 12 0.02
92 167 0.30
93 205 0.37
94 81 0.15
95 30 0.05
96 63 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:37959325 original size:281 final size:279
Alignment explanation
Indices: 37958846--37959518 Score: 1154
Period size: 281 Copynumber: 2.4 Consensus size: 279
37958836 TTCAGCCAAG
37958846 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
37958911 AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
37958976 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
37959041 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
196 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
37959106 GCCGATGTGATGAATGTGA
261 GCCGATGTGATGAATGTGA
*
37959125 AAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 AAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
37959190 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATG
64 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
37959254 TGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
129 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
*
37959318 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
193 -TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
37959383 AATGGCCGATGTGATGAATGTGA
257 AATAGCCGATGTGATGAATGTGA
* *
37959406 AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
* * * * * * * *
37959470 GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 AGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37959519 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 15, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
278 46 0.12
279 92 0.25
280 33 0.09
281 203 0.54
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (279 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGA
Found at i:37959693 original size:37 final size:37
Alignment explanation
Indices: 37959637--37959715 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37959627 CCGAGCTCTA
* *
37959637 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
37959674 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37959711 AAGAC
1 AAGAC
37959716 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37961650 original size:43 final size:43
Alignment explanation
Indices: 37961580--37961681 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
37961570 TTGGTTTTCA
37961580 GCACTAAGTGTGC-GGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
37961622 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
37961665 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
37961682 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 13 0.22
43 46 0.78
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:37961698 original size:29 final size:30
Alignment explanation
Indices: 37961663--37961737 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
37961653 GTTGTGAGAT
* * *
37961663 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAGCTTAAAAGTACA
*
37961692 TGGCACTAAGTGTGCGAGTTTAAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTAAAAGTACA
37961722 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37961738 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 22 0.54
30 19 0.46
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGCTTAAAAGTACA
Found at i:37962147 original size:40 final size:40
Alignment explanation
Indices: 37962049--37962147 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 40
37962039 TCGAATGATG
* *
37962049 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAA
* * * * *
37962089 TCCGGACTAAGAT-TCGAAGGCATTGGTGC-GAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGC-TTGGTGCTAAGTGACCAAA
37962129 TCCGGGCTAAGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
37962148 AGCAATCATG
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
39 1 0.02
40 39 0.83
41 7 0.15
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAA
Found at i:37965753 original size:47 final size:47
Alignment explanation
Indices: 37965695--37966236 Score: 904
Period size: 47 Copynumber: 11.5 Consensus size: 47
37965685 ATTCAGCCAA
37965695 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
37965742 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
37965789 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
37965838 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
37965885 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
37965932 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
37965979 GAAAGTGTATATGTGTGATAAGGCCTAATAGCGCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGC-CGATGTGATGAATGT
37966027 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
37966074 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
37966121 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
37966168 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
37966215 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
37966237 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 17, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
47 383 0.81
48 45 0.09
49 47 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:37966110 original size:236 final size:236
Alignment explanation
Indices: 37965695--37966236 Score: 906
Period size: 236 Copynumber: 2.3 Consensus size: 236
37965685 ATTCAGCCAA
37965695 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37965760 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
*
37965825 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
130 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
37965890 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
195 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * *
37965932 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37965997 TAAGGCCTAATAGCGCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
66 TAAGGCCTAATAGC-CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
*
37966061 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
130 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
37966126 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
195 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * * *
37966168 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37966233 TAAG
66 TAAG
37966237 TCCCGAAGGG
Statistics
Matches: 284, Mismatches: 20, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
236 187 0.66
237 75 0.26
238 22 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (236 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:37966411 original size:37 final size:37
Alignment explanation
Indices: 37966355--37966433 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37966345 CCGAGCTCTA
* *
37966355 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
37966392 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37966429 AAGAC
1 AAGAC
37966434 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37971400 original size:40 final size:40
Alignment explanation
Indices: 37971343--37971600 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
37971333 CGGATGATAA
* * *
37971343 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
37971383 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* ** *
37971423 CCGGGTTAAGTCCCGATTGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37971463 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37971503 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
37971543 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
37971583 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37971601 TACCTGGCTT
Statistics
Matches: 194, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 16 0.08
40 178 0.92
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37973414 original size:17 final size:16
Alignment explanation
Indices: 37973389--37973431 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
37973379 AAATCCTAAA
* *
37973389 TTTTCCTTTTCCTTTT
1 TTTTTCTTTCCCTTTT
37973405 CTTTTTCTTTCCCTTTT
1 -TTTTTCTTTCCCTTTT
*
37973422 TCTTTCTTTC
1 TTTTTCTTTC
37973432 TTTCCCTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTCTTTCCCTTTT
Found at i:37977301 original size:42 final size:43
Alignment explanation
Indices: 37977246--37977348 Score: 131
Period size: 42 Copynumber: 2.4 Consensus size: 43
37977236 GATTTATGTA
* ** *
37977246 TAAGACCATGTCTGGGACATTGGCATC-ATATCTGA-TTTCATG
1 TAAGACCCTGTCTGGGACAGAGGCATCAATAT-TGAGTTACATG
37977288 TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAGTTACATG
1 TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAGTTACATG
37977331 TAAGACCAC-GTCTGGGAC
1 TAAGACC-CTGTCTGGGAC
37977349 GTCGGCATTG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
42 27 0.50
43 26 0.48
44 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAGTTACATG
Found at i:37977356 original size:43 final size:42
Alignment explanation
Indices: 37977246--37977356 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
37977236 GATTTATGTA
* * * *
37977246 TAAGACCATGTCTGGGACATTGGCATCATATCTGATTTCATG
1 TAAGACCACGTCTGGGACGTAGGCATCATATCTGATTACATG
37977288 TAAGACC-CTGTCTGGGACAG-AGGCATCAATAT-TGAGTTACATG
1 TAAGACCAC-GTCTGGGAC-GTAGGCATC-ATATCTGA-TTACATG
*
37977331 TAAGACCACGTCTGGGACGTCGGCAT
1 TAAGACCACGTCTGGGACGTAGGCAT
37977357 TGTAGTTGTT
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
42 26 0.45
43 31 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACGTAGGCATCATATCTGATTACATG
Found at i:37981659 original size:27 final size:27
Alignment explanation
Indices: 37981628--37981692 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
37981618 AATCACTAAA
* *
37981628 CACTTTGCTATGTTTGGCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
37981655 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
37981682 CACTTTGCCAT
1 CACTTTGCCAT
37981693 AGTTCAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:37981792 original size:31 final size:31
Alignment explanation
Indices: 37981756--37981896 Score: 183
Period size: 31 Copynumber: 4.5 Consensus size: 31
37981746 AGTGTAGCTA
* *
37981756 AAGCTACCACTATTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* * * *
37981787 GAGCTATCACTTTTCACTAATTAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* * *
37981818 AAGCTACTACTTTTCACTCATTAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
37981849 AAGCTATCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
37981880 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
37981897 ATTGAACACA
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 94 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCG
Found at i:37981940 original size:32 final size:32
Alignment explanation
Indices: 37981889--37982001 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 32
37981879 GAAGCTACCA
* *
37981889 CTTTTCACA-TTGAACACACAAGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAA-GTGTACATTTC
37981922 CTTTTCAAG-TGTACACACAAAGTGTACATTTC
1 CTTTTCAAGTTGTACACAC-AAGTGTACATTTC
* *
37981954 CTTTTTAAGTTGTACACACACAGTGTACATTTT
1 CTTTTCAAGTTGTACACACA-AGTGTACATTTC
*
37981987 CTTTTCTAGTTGTAC
1 CTTTTCAAGTTGTAC
37982002 CTTTTAGGTA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
32 28 0.40
33 42 0.60
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (32 bp):
CTTTTCAAGTTGTACACACAAGTGTACATTTC
Found at i:37981973 original size:33 final size:33
Alignment explanation
Indices: 37981902--37982001 Score: 132
Period size: 33 Copynumber: 3.1 Consensus size: 33
37981892 TTCACATTGA
* * *
37981902 ACACACAAGGCGTACATTTCCTTTTCAAG-TGT
1 ACACACAAAGTGTACATTTCCTTTTTAAGTTGT
37981934 ACACACAAAGTGTACATTTCCTTTTTAAGTTGT
1 ACACACAAAGTGTACATTTCCTTTTTAAGTTGT
* *
37981967 ACACACACAGTGTACATTTTCTTTTCT-AGTTGT
1 ACACACAAAGTGTACATTTCCTTTT-TAAGTTGT
37982000 AC
1 AC
37982002 CTTTTAGGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
32 26 0.43
33 34 0.56
34 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (33 bp):
ACACACAAAGTGTACATTTCCTTTTTAAGTTGT
Found at i:37986047 original size:56 final size:56
Alignment explanation
Indices: 37985987--37986092 Score: 185
Period size: 56 Copynumber: 1.9 Consensus size: 56
37985977 CTTCGAATAT
*
37985987 GTATGACACTTACTGTGCGAGATATCGAGTGTGGCACTTAGTGTGCGAGATATCGA
1 GTATGACACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGCGAGATATCGA
* *
37986043 GTATGGCACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGTGAGA
1 GTATGACACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGCGAGA
37986093 CAATGAGTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (56 bp):
GTATGACACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGCGAGATATCGA
Found at i:37986102 original size:28 final size:28
Alignment explanation
Indices: 37985987--37986092 Score: 167
Period size: 28 Copynumber: 3.8 Consensus size: 28
37985977 CTTCGAATAT
*
37985987 GTATGACACTTACTGTGCGAGATATCGA
1 GTATGGCACTTACTGTGCGAGATATCGA
* *
37986015 GTGTGGCACTTAGTGTGCGAGATATCGA
1 GTATGGCACTTACTGTGCGAGATATCGA
37986043 GTATGGCACTTACTGTGCGAGATATCGA
1 GTATGGCACTTACTGTGCGAGATATCGA
* *
37986071 GTATGGCACTTAGTGTGTGAGA
1 GTATGGCACTTACTGTGCGAGA
37986093 CAATGAGTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (28 bp):
GTATGGCACTTACTGTGCGAGATATCGA
Found at i:37988591 original size:46 final size:46
Alignment explanation
Indices: 37988541--37988713 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
37988531 TGGTTGAGCA
37988541 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37988587 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
37988632 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37988680 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37988714 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37988697 original size:93 final size:93
Alignment explanation
Indices: 37988538--37988708 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37988528 GGATGGTTGA
* *
37988538 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37988603 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37988631 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37988696 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37988709 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:38001784 original size:11 final size:11
Alignment explanation
Indices: 38001768--38001794 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
38001758 TGCCTTATAA
38001768 GGCATTATATG
1 GGCATTATATG
38001779 GGCATTATATG
1 GGCATTATATG
38001790 GGCAT
1 GGCAT
38001795 AAGTGCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (11 bp):
GGCATTATATG
Found at i:38003482 original size:27 final size:27
Alignment explanation
Indices: 38003444--38003496 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
38003434 AGGTAAGCTA
* *
38003444 ATATACAAATAATGTGATGTTATGTTC
1 ATATAAAAATAATATGATGTTATGTTC
38003471 ATATAAAAATAATATGATGTTATGTT
1 ATATAAAAATAATATGATGTTATGTT
38003497 ATTTTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.42
Consensus pattern (27 bp):
ATATAAAAATAATATGATGTTATGTTC
Found at i:38026994 original size:45 final size:45
Alignment explanation
Indices: 38026927--38027173 Score: 306
Period size: 45 Copynumber: 5.6 Consensus size: 45
38026917 CAGGCTTCGG
38026927 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
* * *
38026972 GCCTAGCAGGCTATGATACCGGTGAAATGCTATTCAGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
* * *
38027017 GCCTAGCAGGCTATGATGCCAGTGAGATATTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
* * *
38027062 GCCTAGCAGGCTATAATGCCGGTGAGATACTATTTGGG-CTTTCGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTT-GA
* * *
38027107 GCCTAGCAGGCTATAATGCCGGTGACATGA-TA-TCGGGCC-TCGA
1 GCCTAGCAGGCTATGATGCCGGTGAAAT-ACTATTCGGGCCTTTGA
* * *
38027150 GCCTAGTAGGCGA-AATGCCGGTGA
1 GCCTAGCAGGCTATGATGCCGGTGA
38027174 TTAGAGAAAA
Statistics
Matches: 181, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
42 11 0.06
43 13 0.07
44 9 0.05
45 147 0.81
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (45 bp):
GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
Found at i:38033821 original size:38 final size:38
Alignment explanation
Indices: 38033776--38033916 Score: 219
Period size: 38 Copynumber: 3.7 Consensus size: 38
38033766 AGATTAAAAA
*
38033776 CCCGCAGGCTTCGTACTGGTATTATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
* * *
38033814 CACGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
*
38033852 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
* *
38033890 CCCGCAGGCCTAGTACTGGTATTATAT
1 CCCGCAGGCTTCGTACTGGTATTATAT
38033917 TCAGGCCTTG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 94 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
Found at i:38035319 original size:48 final size:48
Alignment explanation
Indices: 38035225--38035328 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
38035215 TGTGCTAAGC
* * *
38035225 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
38035273 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
38035321 ATAAGACC
1 GTAAGACC
38035329 ACAGTCGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:38038767 original size:108 final size:108
Alignment explanation
Indices: 38038578--38038794 Score: 434
Period size: 108 Copynumber: 2.0 Consensus size: 108
38038568 CTTATGCATG
38038578 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT
1 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT
38038643 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA
66 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA
38038686 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT
1 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT
38038751 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA
66 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA
38038794 T
1 T
38038795 GGGCTATGTG
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (108 bp):
TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT
ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA
Found at i:38040602 original size:46 final size:46
Alignment explanation
Indices: 38040552--38040724 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
38040542 TGGTTGAGCA
38040552 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
38040598 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
38040643 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
38040691 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
38040725 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 29 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:38040708 original size:93 final size:93
Alignment explanation
Indices: 38040549--38040719 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
38040539 GGATGGTTGA
***
38040549 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
38040614 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
38040642 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
38040707 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
38040720 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:38048169 original size:46 final size:45
Alignment explanation
Indices: 38048119--38048290 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
38048109 TGGTTGAGCA
38048119 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
38048165 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
38048211 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
38048257 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
38048291 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:38048273 original size:92 final size:92
Alignment explanation
Indices: 38048116--38048285 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
38048106 GGATGGTTGA
* *
38048116 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
38048181 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
38048208 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
38048273 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
38048286 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:38049910 original size:38 final size:38
Alignment explanation
Indices: 38049849--38050121 Score: 384
Period size: 38 Copynumber: 7.1 Consensus size: 38
38049839 ATTTGATGTG
*
38049849 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
*
38049889 TATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
38049927 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
38049965 TATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTAGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
*
38050005 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
38050043 TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
38050081 TATCCAGGTTAAATCCCGCAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
38050119 TAT
1 TAT
38050122 TCAGGCCTTT
Statistics
Matches: 211, Mismatches: 20, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 160 0.76
39 15 0.07
40 36 0.17
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:38050053 original size:116 final size:116
Alignment explanation
Indices: 38049849--38050103 Score: 408
Period size: 116 Copynumber: 2.2 Consensus size: 116
38049839 ATTTGATGTG
* *
38049849 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTT
1 TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATTCGGGTTAAATCCCGCAGGCTT
*
38049914 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
*
38049965 TATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTAGTAATATA-TCTGGGTTAAATCCCGCAGGCT
1 TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATTC-GGGTTAAATCCCGCAGGCT
* *
38050029 TCGTGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTATTA
65 TCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* *
38050081 TATCCAGG-TTAAA-TCCCGCAGGC
1 TATCCGGGTTTAAAGACCCGCAGGC
38050104 CTAGTACTGG
Statistics
Matches: 129, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
114 8 0.06
115 7 0.05
116 114 0.88
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (116 bp):
TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATTCGGGTTAAATCCCGCAGGCTT
CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
Found at i:38055984 original size:39 final size:39
Alignment explanation
Indices: 38055888--38055965 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
38055878 AAGTTAACAA
38055888 CAATTAATAATAAAAAATATACATATTAAATTATTAATG
1 CAATTAATAATAAAAAATATACATATTAAATTATTAATG
38055927 CAATTAATAATAAAAAATATACATATTAAATTATTAATG
1 CAATTAATAATAAAAAATATACATATTAAATTATTAATG
38055966 TTATTAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (39 bp):
CAATTAATAATAAAAAATATACATATTAAATTATTAATG
Found at i:38059487 original size:37 final size:37
Alignment explanation
Indices: 38059437--38059510 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
38059427 ATTGGTCACC
38059437 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA
1 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA
38059474 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA
1 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA
38059511 TTTTACATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (37 bp):
CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA
Found at i:38063554 original size:46 final size:48
Alignment explanation
Indices: 38063444--38063565 Score: 149
Period size: 46 Copynumber: 2.5 Consensus size: 48
38063434 TGTCTTCGAC
** * * *
38063444 ATGGACTTACATGAATTATTCATGTCTCCAATGCCATATATAAATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATAT-AATCTAAT
*
38063494 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATAT-ATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATAATCTAAT
*
38063540 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
38063566 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 31 0.48
48 4 0.06
50 29 0.45
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATAATCTAAT
Found at i:38069705 original size:46 final size:47
Alignment explanation
Indices: 38069599--38069720 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
38069589 TGTCTTTGAC
** * * *
38069599 ATGGACTTACATGAATTATTCCTGTCTCTAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCTAAAGCC--A-ATATACCTAAT
* *
38069649 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCC-ATATACCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCTAAAGCCAATATACCTAAT
*
38069695 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
38069721 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCTAAAGCCAATATACCTAAT
Found at i:38072467 original size:28 final size:28
Alignment explanation
Indices: 38072399--38072477 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
38072389 GAATCATTCG
* *
38072399 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
**
38072427 ATACCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
38072455 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
38072478 ATTTGATTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:38077303 original size:10 final size:10
Alignment explanation
Indices: 38077288--38077315 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
38077278 TAAATACATT
38077288 TAATTAAAGA
1 TAATTAAAGA
38077298 TAATTAAAGA
1 TAATTAAAGA
38077308 TAATTAAA
1 TAATTAAA
38077316 ATTAAATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:38079338 original size:5 final size:6
Alignment explanation
Indices: 38079271--38079345 Score: 59
Period size: 6 Copynumber: 12.7 Consensus size: 6
38079261 ATATTTAACT
* * **
38079271 AAAAT- AAAATA AAAAT- AAAATA ATAAATA ATAAGT- AAAA-A GAAAGG
1 AAAATA AAAATA AAAATA AAAATA A-AAATA A-AAATA AAAATA AAAATA
38079317 AAAATA ATAAATA AAAATA AAAATA AAAA
1 AAAATA A-AAATA AAAATA AAAATA AAAA
38079346 GAAAGATTGG
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
5 15 0.26
6 26 0.46
7 16 0.28
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:38085544 original size:17 final size:17
Alignment explanation
Indices: 38085488--38085553 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 17
38085478 TAATGGTGGA
38085488 AAAGAAAATAAAATTATGG
1 AAAGAAAA-AAAA-TATGG
** **
38085507 AAA-AAAAAATTTTATTA
1 AAAGAAAAAA-AATATGG
38085524 AAAGAAAAAAAATATGG
1 AAAGAAAAAAAATATGG
38085541 AAAGAACAAAAAA
1 AAAGAA-AAAAAA
38085554 CTTTTAGGGG
Statistics
Matches: 36, Mismatches: 8, Indels: 7
0.71 0.16 0.14
Matches are distributed among these distances:
17 17 0.47
18 16 0.44
19 3 0.08
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.18
Consensus pattern (17 bp):
AAAGAAAAAAAATATGG
Found at i:38085683 original size:10 final size:10
Alignment explanation
Indices: 38085668--38085699 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
38085658 TAAATACATT
38085668 TAATTAAAGA
1 TAATTAAAGA
38085678 TAATTAAAGA
1 TAATTAAAGA
38085688 TAATTAAA-A
1 TAATTAAAGA
38085697 TAA
1 TAA
38085700 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:38085725 original size:27 final size:26
Alignment explanation
Indices: 38085695--38085756 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
38085685 AGATAATTAA
38085695 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
38085722 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
38085749 AATAAAAT
1 AATAAAAT
38085757 AGAGTCTTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:38088389 original size:22 final size:22
Alignment explanation
Indices: 38088362--38088403 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
38088352 TTATTAACCC
38088362 AAATTAAATTAGA-TATAAATTA
1 AAATT-AATTAGATTATAAATTA
*
38088384 AAATTAATTATATTATAAAT
1 AAATTAATTAGATTATAAAT
38088404 AAATACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATTAATTAGATTATAAATTA
Found at i:38105442 original size:50 final size:50
Alignment explanation
Indices: 38105362--38105750 Score: 396
Period size: 50 Copynumber: 7.8 Consensus size: 50
38105352 TAGGGTTATT
* *
38105362 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATA
1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA
* * *
38105412 CGAGAGCTAGTGCAAGACCATGTCTAGGACATGGCATCGGCCTCGATAAA
1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA
* * * *
38105462 TGATAG-TCAATGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATAGA
1 CGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATATA
* * * * *
38105512 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-CAC-AAATGGA
1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAT--A
* *
38105562 CGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATA
1 CGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA
* * ** * *
38105612 CGAGAGCTAGTGTAAGACCATGTCTAGGATATGGTGTCGGCTTCGATACA
1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA
* * * * * * * *
38105662 TGATAGTTAGTGTAAGACCATGTTTGGGACATAGCATCGTCTTTG--ATA
1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA
* *
38105710 CGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
38105751 TTCCTACCTA
Statistics
Matches: 281, Mismatches: 48, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
48 40 0.14
49 2 0.01
50 232 0.83
51 4 0.01
52 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA
Found at i:38108749 original size:16 final size:16
Alignment explanation
Indices: 38108728--38108761 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
38108718 ACCATCTCTT
38108728 TTAGGAAAAATCATGG
1 TTAGGAAAAATCATGG
38108744 TTAGGAAAAATCATGG
1 TTAGGAAAAATCATGG
38108760 TT
1 TT
38108762 TATCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (16 bp):
TTAGGAAAAATCATGG
Found at i:38113495 original size:45 final size:46
Alignment explanation
Indices: 38113435--38113558 Score: 162
Period size: 45 Copynumber: 2.7 Consensus size: 46
38113425 CAAGTTGATG
* *
38113435 CCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGAT
1 CCATGTCCCAAACATGTCTTACACTGGCTCT-CGTCTCAAGGCCGAT
* * *
38113481 -CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAATGCCGAT
1 CCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAAGGCCGAT
38113526 GCCATGTCCCAAACATGGTCTTACACTGGCTCT
1 -CCATGTCCCAAACAT-GTCTTACACTGGCTCT
38113559 TATAATGTGG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
45 38 0.56
46 1 0.01
47 14 0.21
48 15 0.22
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (46 bp):
CCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAAGGCCGAT
Found at i:38113579 original size:47 final size:46
Alignment explanation
Indices: 38113431--38113603 Score: 144
Period size: 45 Copynumber: 3.7 Consensus size: 46
38113421 ATCTCAAGTT
* * *
38113431 GATGCCATGTCCCAGACATGTCTTACACTGGCT-TACGTC-TCGA-GGCC
1 GATG-CATGTCCCAAACATGTCTTACACTAGCTCT-C-TCAT-AATGGCC
*
38113478 GAT-CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAAT-GCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCATAATGGCC
*
38113523 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-T-ATAATGTGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCTCATAA--TGGCC
* * *
38113571 GATGCATGTCCTAGACATGTTTTACACTAGCTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTC
38113604 ACACACGAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
45 40 0.37
46 16 0.15
47 30 0.28
48 22 0.20
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAATGGCC
Found at i:38118985 original size:27 final size:27
Alignment explanation
Indices: 38118955--38119125 Score: 238
Period size: 27 Copynumber: 6.3 Consensus size: 27
38118945 TATTGAAATG
*
38118955 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
38118982 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
38119009 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
38119036 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
38119063 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
38119090 CCCTC-AGTTTACTA-AATTACCGTTTTA
1 CCCTCGA-TTTA-TAGAATTACCGTTTTA
38119117 CCCTCGATT
1 CCCTCGATT
38119126 GTGAAATTAT
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 123 0.97
28 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:38119017 original size:54 final size:54
Alignment explanation
Indices: 38118955--38119125 Score: 272
Period size: 54 Copynumber: 3.2 Consensus size: 54
38118945 TATTGAAATG
* *
38118955 CCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
38119009 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
38119063 CCCTCGATTTATAAAATTACCATTTTACCCTC-AGTTTACTAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCGTTTTA
38119117 CCCTCGATT
1 CCCTCGATT
38119126 GTGAAATTAT
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 107 0.99
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
Found at i:38119187 original size:27 final size:27
Alignment explanation
Indices: 38119157--38119280 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
38119147 TGTAGGATAG
38119157 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * * *
38119184 AATTATCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
38119211 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
38119238 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
38119265 AATTACAAAAATACCC
1 AATTACCAAAATACCC
38119281 TTGACTTTCT
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.04
27 72 0.91
28 4 0.05
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:38119198 original size:54 final size:53
Alignment explanation
Indices: 38119115--38119256 Score: 137
Period size: 54 Copynumber: 2.7 Consensus size: 53
38119105 ATTACCGTTT
* * *
38119115 TACCCTCGA-TTGTGAAATTATTGAAATACCCCTGTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTATCGAAATACCCCTGTAGG-TGA-AATTACCAAAA
* * ** *
38119168 TACCC-CTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTATCGAAATACCCCT-GTAGGTGAAATTACCAAAA
* *
38119222 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG
1 TACCCTCAATTTGTAAAATTATCGAAATACCCCTG
38119257 ATTTACAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.08
54 60 0.83
55 5 0.07
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.30
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTATCGAAATACCCCTGTAGGTGAAATTACCAAAA
Found at i:38119268 original size:54 final size:53
Alignment explanation
Indices: 38119157--38119337 Score: 157
Period size: 54 Copynumber: 3.3 Consensus size: 53
38119147 TGTAGGATAG
* * ***
38119157 AATTACCAAAATACCC-CTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTA-CAAAATACCACTGGTTTACAA
* * *
38119211 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTA-CAAAATACCACTGGTTTACAA
* * * * * *
38119265 AATTACAAAAATACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAA
1 AATTACCAAAATACCC-TCAATTTGT-AAAATTACA-AAATACCACTGGTTTACAA
**
38119321 AATTACTGAAATACCCT
1 AATTACCAAAATACCCT
38119338 TGGTTTGTAG
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
54 57 0.55
55 9 0.09
56 37 0.36
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACAAAATACCACTGGTTTACAA
Found at i:38119331 original size:27 final size:27
Alignment explanation
Indices: 38119292--38119343 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
38119282 TGACTTTCTA
38119292 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
38119319 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
38119344 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:38119345 original size:110 final size:108
Alignment explanation
Indices: 38119157--38119363 Score: 252
Period size: 110 Copynumber: 1.9 Consensus size: 108
38119147 TGTAGGATAG
* * * * ***
38119157 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGAAATTACCGAAA
1 AATTACAAAAATACCCCTACTTTCTAAAATTATAGAAATACCACTGGTTTACAAAATTACCGAAA
*
38119222 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
66 TACCCTCAATTTGTAAAATTACCAAAACACCCCTGATTTACAA
* * *
38119265 AATTACAAAAATACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAAAATTACTGA
1 AATTACAAAAATACCCCT-ACTTTCT-AAAATTATAGAAATACCACTGGTTTACAAAATTACCGA
*** * *
38119330 AATACCCTTGGTTTGTAGATTTACCAAAACACCC
64 AATACCCTCAATTTGTAAAATTACCAAAACACCC
38119364 TTGTAGGATG
Statistics
Matches: 81, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
108 16 0.20
109 5 0.06
110 60 0.74
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (108 bp):
AATTACAAAAATACCCCTACTTTCTAAAATTATAGAAATACCACTGGTTTACAAAATTACCGAAA
TACCCTCAATTTGTAAAATTACCAAAACACCCCTGATTTACAA
Found at i:38119427 original size:27 final size:27
Alignment explanation
Indices: 38119384--38119457 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
38119374 AAATGACTAA
*
38119384 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
** *
38119411 AA-AGCCCCTGTAGGGTAAAGTGATCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
38119438 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
38119458 TAACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:38120287 original size:25 final size:25
Alignment explanation
Indices: 38120249--38120318 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
38120239 AGGAAGTGCT
* *
38120249 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
38120274 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
**
38120299 AAAAGGGCTTTATCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
38120319 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:38120587 original size:31 final size:31
Alignment explanation
Indices: 38120538--38120651 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
38120528 CGCTTACAGT
*
38120538 AAAGGCTTCGG-CCAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
38120568 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
38120599 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
38120630 AAAGGCTTCGGCGCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
38120652 TCAAGACTAA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
30 16 0.20
31 64 0.80
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:38122042 original size:16 final size:16
Alignment explanation
Indices: 38122021--38122053 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
38122011 TGGTGGAAAT
38122021 TGCTTCTACTCTCATG
1 TGCTTCTACTCTCATG
38122037 TGCTTCTACTCTCATG
1 TGCTTCTACTCTCATG
38122053 T
1 T
38122054 TGGATGACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.30, G:0.12, T:0.45
Consensus pattern (16 bp):
TGCTTCTACTCTCATG
Found at i:38127702 original size:32 final size:32
Alignment explanation
Indices: 38127642--38127705 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
38127632 ATGAATACAA
*
38127642 AGGATATCAAACATGTTCTTCTATATCTCAAT
1 AGGATATCAAACATGTTCTTCTAAATCTCAAT
38127674 AGGATATCAAACCAT-TTCTT-TAAAATCTCAAT
1 AGGATATCAAA-CATGTTCTTCT-AAATCTCAAT
38127706 GGTTCATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 1 0.03
32 25 0.86
33 3 0.10
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.36
Consensus pattern (32 bp):
AGGATATCAAACATGTTCTTCTAAATCTCAAT
Found at i:38133778 original size:126 final size:129
Alignment explanation
Indices: 38133595--38133826 Score: 323
Period size: 126 Copynumber: 1.8 Consensus size: 129
38133585 AAAAAACGAT
* * *
38133595 GAGAAATTAAGATAGGGAACCTGAGTAAGAGAATGGAGATTGAATGAGAGGAGGAGAGAGAGAG-
1 GAGAAATTAAGATAGGGAACATGAGTAAGAGAATCGAGATGGAATGAGAGGAGGAGAGAGAGAGA
* *
38133659 A-GAGAGAC-A-AAAACCCTC-CCGCCGCTGTTGTATGGTATGTAGTTATTAGATACCAAAATG
66 AGGAGAGACAACAAAACCCCCTCCGCCGCTGTTATATGGTATGTAGTTATTAGATACCAAAATG
* *
38133719 GAGAAATTAAGATAGGGGAAGATGAGTAATTAGAATCGAGATGGAATGAGA-GATGGAGAGAGAG
1 GAGAAATTAAGATA-GGGAACATGAGTAA-GAGAATCGAGATGGAATGAGAGGA-GGAGAGAGAG
38133783 AGAAGGAGAGACAGACAAAACCCCCTCCGCCGCTGTTATATGGT
63 AGAAGGAGAGACA-ACAAAACCCCCTCCGCCGCTGTTATATGGT
38133827 TTTCAGATTC
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
124 14 0.15
125 14 0.15
126 30 0.33
127 1 0.01
128 7 0.08
130 1 0.01
131 8 0.09
132 17 0.18
ACGTcount: A:0.39, C:0.12, G:0.31, T:0.18
Consensus pattern (129 bp):
GAGAAATTAAGATAGGGAACATGAGTAAGAGAATCGAGATGGAATGAGAGGAGGAGAGAGAGAGA
AGGAGAGACAACAAAACCCCCTCCGCCGCTGTTATATGGTATGTAGTTATTAGATACCAAAATG
Done.