Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_A13 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 109233746 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32 Warning! 2708888 characters in sequence are not A, C, G, or T File 117 of 332 Found at i:37839362 original size:50 final size:50 Alignment explanation
Indices: 37839229--37839362 Score: 162 Period size: 50 Copynumber: 2.7 Consensus size: 50 37839219 CTGGTACGCA * ** * * 37839229 TAGTAGCCTGCACATAGTACTACACATGCGAACC-AATTATCCGGTACATG 1 TAGTAGCCTGCACTTAGTACTACACATGCG-ACCTAACCATCCGATACACG * *** * 37839279 TAGTAGCTTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG 1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACG 37839329 TAGTAGCCTGCACTTAGTACTACACATGCGACCT 1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT 37839363 CACAATAGAT Statistics Matches: 69, Mismatches: 14, Indels: 2 0.81 0.16 0.02 Matches are distributed among these distances: 49 3 0.04 50 66 0.96 ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25 Consensus pattern (50 bp): TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACG Found at i:37842237 original size:24 final size:24 Alignment explanation
Indices: 37842210--37842257 Score: 78 Period size: 24 Copynumber: 2.0 Consensus size: 24 37842200 AAGAATCTTC 37842210 GGTCTGAACGAGGTGGGGAATACT 1 GGTCTGAACGAGGTGGGGAATACT ** 37842234 GGTCTGGCCGAGGTGGGGAATACT 1 GGTCTGAACGAGGTGGGGAATACT 37842258 TGTCCGACGA Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 24 22 1.00 ACGTcount: A:0.21, C:0.15, G:0.44, T:0.21 Consensus pattern (24 bp): GGTCTGAACGAGGTGGGGAATACT Found at i:37846496 original size:21 final size:20 Alignment explanation
Indices: 37846468--37846506 Score: 60 Period size: 21 Copynumber: 1.9 Consensus size: 20 37846458 CAAAACTTGT 37846468 ATAACTATCAACAAACATTC 1 ATAACTATCAACAAACATTC * 37846488 ATAATCTATCACCAAACAT 1 ATAA-CTATCAACAAACAT 37846507 CAAAATACTC Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 20 4 0.24 21 13 0.76 ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26 Consensus pattern (20 bp): ATAACTATCAACAAACATTC Found at i:37847805 original size:31 final size:29 Alignment explanation
Indices: 37847770--37847828 Score: 73 Period size: 29 Copynumber: 2.0 Consensus size: 29 37847760 AATTGTATTT * 37847770 TATTAATTTAATATTAAAGTGATTATCTTAA 1 TATTAAATTAA-ATTAAA-TGATTATCTTAA * * 37847801 TATTAAATTAAATTTAATGTTTATCTTA 1 TATTAAATTAAATTAAATGATTATCTTA 37847829 CAGATAAACA Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 29 10 0.40 30 5 0.20 31 10 0.40 ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51 Consensus pattern (29 bp): TATTAAATTAAATTAAATGATTATCTTAA Found at i:37857603 original size:31 final size:31 Alignment explanation
Indices: 37857555--37857638 Score: 134 Period size: 31 Copynumber: 2.7 Consensus size: 31 37857545 TTAGTCTTGA * 37857555 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT 1 CATATCACTGGGCCGAAGCCTTTTCATAAAT 37857585 CATATCACTGGGCCGAAGCCTTTTCATAAAT 1 CATATCACTGGGCCGAAGCCTTTTCATAAAT * * 37857616 CATATCATTGGGTCGAAGCCTTT 1 CATATCACTGGGCCGAAGCCTTT 37857639 ACTGTAAACG Statistics Matches: 50, Mismatches: 3, Indels: 1 0.93 0.06 0.02 Matches are distributed among these distances: 30 5 0.10 31 45 0.90 ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32 Consensus pattern (31 bp): CATATCACTGGGCCGAAGCCTTTTCATAAAT Found at i:37857835 original size:24 final size:25 Alignment explanation
Indices: 37857808--37857883 Score: 84 Period size: 24 Copynumber: 3.1 Consensus size: 25 37857798 GCCTAGCCTC * 37857808 TTTTAAT-AACTGGGGTAAAGCCCT 1 TTTTAATAAACTGGGGCAAAGCCCT * 37857832 TTTTAATAAACTGGGGCAAAGTCC- 1 TTTTAATAAACTGGGGCAAAGCCCT *** * 37857856 TTTCGGTAAACTGGGGCATAGCCCT 1 TTTTAATAAACTGGGGCAAAGCCCT 37857881 TTT 1 TTT 37857884 AGCACTTCCT Statistics Matches: 43, Mismatches: 7, Indels: 3 0.81 0.13 0.06 Matches are distributed among these distances: 24 26 0.60 25 17 0.40 ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33 Consensus pattern (25 bp): TTTTAATAAACTGGGGCAAAGCCCT Found at i:37858116 original size:27 final size:27 Alignment explanation
Indices: 37858086--37858281 Score: 241 Period size: 27 Copynumber: 7.3 Consensus size: 27 37858076 GGGGCAAAAT * * * 37858086 GGTAATTTTACCCCACAAGGGTATCTC 1 GGTAATTCTACCCTACAAGGGTATTTC * 37858113 GGTAATTCTACCCTACAGGGGTATTTC 1 GGTAATTCTACCCTACAAGGGTATTTC * * * * 37858140 GGTATTTCTACCATACAAGGGCACTTC 1 GGTAATTCTACCCTACAAGGGTATTTC * 37858167 TGTAATTCTACCCTACAAGGGTATTTC 1 GGTAATTCTACCCTACAAGGGTATTTC * * * 37858194 AGTAATTCTACCCTATAGGGGTATTTC 1 GGTAATTCTACCCTACAAGGGTATTTC 37858221 GGTAATTCTACCCTAC-AGGGTTATTTC 1 GGTAATTCTACCCTACAAGGG-TATTTC * * 37858248 AGTAATTCTACCCTACAGGGGTATTTC 1 GGTAATTCTACCCTACAAGGGTATTTC * 37858275 AGTAATT 1 GGTAATT 37858282 TTACAAATCG Statistics Matches: 145, Mismatches: 22, Indels: 4 0.85 0.13 0.02 Matches are distributed among these distances: 26 3 0.02 27 139 0.96 28 3 0.02 ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34 Consensus pattern (27 bp): GGTAATTCTACCCTACAAGGGTATTTC Found at i:37858214 original size:81 final size:81 Alignment explanation
Indices: 37858087--37858281 Score: 275 Period size: 81 Copynumber: 2.4 Consensus size: 81 37858077 GGGCAAAATG * * * * * 37858087 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC 1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC * 37858152 ATACAAGGG-CACTTCT 66 ATAC-AGGGTCACTTCA * 37858168 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACC 1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC * * * 37858233 CTACAGGGTTATTTCA 66 ATACAGGGTCACTTCA * 37858249 GTAATTCTACCCTACAGGGGTATTTCAGTAATT 1 GTAATTCTACCCTACAAGGGTATTTCAGTAATT 37858282 TTACAAATCG Statistics Matches: 102, Mismatches: 11, Indels: 2 0.89 0.10 0.02 Matches are distributed among these distances: 80 4 0.04 81 98 0.96 ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34 Consensus pattern (81 bp): GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC ATACAGGGTCACTTCA Found at i:37858296 original size:27 final size:27 Alignment explanation
Indices: 37858266--37858416 Score: 166 Period size: 27 Copynumber: 5.6 Consensus size: 27 37858256 TACCCTACAG 37858266 GGGTATTTCAGTAATTTTACAAATCGA 1 GGGTATTTCAGTAATTTTACAAATCGA * 37858293 GGGTATTTCAGTAATTTTGCAAA-CTGA 1 GGGTATTTCAGTAATTTTACAAATC-GA * 37858320 GGGTATTTCGGTAATTTTACAAATCGA 1 GGGTATTTCAGTAATTTTACAAATCGA ** * 37858347 GGGTATTTGGGTAATTTTATAAA-CTGA 1 GGGTATTTCAGTAATTTTACAAATC-GA * * * 37858374 GGGTACTTT-GGTAATTTTACAACT-GG 1 GGGTA-TTTCAGTAATTTTACAAATCGA * 37858400 GGGTATTTTAGTAATTT 1 GGGTATTTCAGTAATTT 37858417 GGTAAACTAA Statistics Matches: 109, Mismatches: 9, Indels: 13 0.83 0.07 0.10 Matches are distributed among these distances: 25 3 0.03 26 15 0.14 27 87 0.80 28 4 0.04 ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40 Consensus pattern (27 bp): GGGTATTTCAGTAATTTTACAAATCGA Found at i:37858297 original size:81 final size:81 Alignment explanation
Indices: 37858087--37858308 Score: 250 Period size: 81 Copynumber: 2.7 Consensus size: 81 37858077 GGGCAAAATG * * * * ** * * 37858087 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC 1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCGGTAATTCTACC * 37858152 ATACAAGGGCACTTCT 66 ATACAAGGGCACTTCA ** 37858168 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACC 1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCGGTAATTCTACC * * * 37858233 CTAC-AGGGTTATTTCA 66 ATACAAGGG-CACTTCA * * * * 37858249 GTAATTCTACCCTACAGGGGTATTTCAGTAATTTTA-CAAATCGAGGGTATTTCAGTAATT 1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAG-GGGTATTTCGGTAATT 37858309 TTGCAAACTG Statistics Matches: 123, Mismatches: 16, Indels: 4 0.86 0.11 0.03 Matches are distributed among these distances: 80 8 0.07 81 115 0.93 ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35 Consensus pattern (81 bp): GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAGGGGTATTTCGGTAATTCTACC ATACAAGGGCACTTCA Found at i:37858300 original size:54 final size:54 Alignment explanation
Indices: 37858184--37858354 Score: 204 Period size: 54 Copynumber: 3.2 Consensus size: 54 37858174 CTACCCTACA * * ** 37858184 AGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC-CCTAC- 1 AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAAT-CG * 37858237 AGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACAAATCG 1 AGGG-TATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAATCG ** ** * 37858292 AGGGTATTTCAGTAATT-TTGCAAACTGAGGGTATTTCGGTAATTTTACAAATCG 1 AGGGTATTTCAGTAATTCTACCCTACAG-GGGTATTTCGGTAATTTTACAAATCG 37858346 AGGGTATTT 1 AGGGTATTT 37858355 GGGTAATTTT Statistics Matches: 103, Mismatches: 11, Indels: 7 0.85 0.09 0.06 Matches are distributed among these distances: 53 9 0.09 54 89 0.86 55 5 0.05 ACGTcount: A:0.27, C:0.15, G:0.20, T:0.37 Consensus pattern (54 bp): AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACAAATCG Found at i:37858351 original size:81 final size:80 Alignment explanation
Indices: 37858266--37858416 Score: 189 Period size: 81 Copynumber: 1.9 Consensus size: 80 37858256 TACCCTACAG * 37858266 GGGTATTTCAGTAATTTTACAAA-TCGAGGGTA-TTTCAGTAATTTTGCAAACTGAGGGTATTTC 1 GGGTATTTCAGTAATTTTACAAACT-GAGGGTACTTT-AGTAATTTTAC-AACTGAGGGTATTTC * 37858329 GGTAATTTTACAAATCGA 63 AGTAATTTTACAAATCGA ** * * * * 37858347 GGGTATTTGGGTAATTTTATAAACTGAGGGTACTTTGGTAATTTTACAACTGGGGGTATTTTAGT 1 GGGTATTTCAGTAATTTTACAAACTGAGGGTACTTTAGTAATTTTACAACTGAGGGTATTTCAGT 37858412 AATTT 66 AATTT 37858417 GGTAAACTAA Statistics Matches: 60, Mismatches: 8, Indels: 5 0.82 0.11 0.07 Matches are distributed among these distances: 80 20 0.33 81 36 0.60 82 4 0.07 ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40 Consensus pattern (80 bp): GGGTATTTCAGTAATTTTACAAACTGAGGGTACTTTAGTAATTTTACAACTGAGGGTATTTCAGT AATTTTACAAATCGA Found at i:37858361 original size:54 final size:54 Alignment explanation
Indices: 37858266--37858416 Score: 207 Period size: 54 Copynumber: 2.8 Consensus size: 54 37858256 TACCCTACAG * * 37858266 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGA 1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGA ** * 37858320 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTGGGTAATTTTATAAACTGA 1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGA * * * 37858374 GGGTACTTT-GGTAATTTTACAACT-GGGGGTATTTTAGTAATTT 1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT 37858417 GGTAAACTAA Statistics Matches: 87, Mismatches: 9, Indels: 3 0.88 0.09 0.03 Matches are distributed among these distances: 53 16 0.18 54 68 0.78 55 3 0.03 ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40 Consensus pattern (54 bp): GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGA Found at i:37860693 original size:31 final size:31 Alignment explanation
Indices: 37860658--37860728 Score: 124 Period size: 31 Copynumber: 2.3 Consensus size: 31 37860648 TTACTGGGTT 37860658 GAAGCCTTTTCATAAATCATATCACTGGGCC 1 GAAGCCTTTTCATAAATCATATCACTGGGCC * * 37860689 GAAGCCTTTTCATAAATCATATCATTGGGCT 1 GAAGCCTTTTCATAAATCATATCACTGGGCC 37860720 GAAGCCTTT 1 GAAGCCTTT 37860729 ACTGTAAACG Statistics Matches: 38, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 31 38 1.00 ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32 Consensus pattern (31 bp): GAAGCCTTTTCATAAATCATATCACTGGGCC Found at i:37860969 original size:24 final size:23 Alignment explanation
Indices: 37860936--37861017 Score: 76 Period size: 24 Copynumber: 3.4 Consensus size: 23 37860926 CTGGAGGTCT * 37860936 AGCCTCTTTTAATAACTGGGGCAA 1 AGCC-CTTTTTATAACTGGGGCAA 37860960 AGCCCTTTTTGATAAACTGGGGCAA 1 AGCCCTTTTT-AT-AACTGGGGCAA * * * 37860985 AGTCCTTTCGGTA-AACTGGGGCAT 1 AGCCCTTT--TTATAACTGGGGCAA 37861009 AGCCCTTTT 1 AGCCCTTTT 37861018 AGCACTTCCT Statistics Matches: 48, Mismatches: 6, Indels: 10 0.75 0.09 0.16 Matches are distributed among these distances: 23 5 0.10 24 23 0.48 25 18 0.38 26 1 0.02 27 1 0.02 ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30 Consensus pattern (23 bp): AGCCCTTTTTATAACTGGGGCAA Found at i:37860977 original size:25 final size:25 Alignment explanation
Indices: 37860949--37861017 Score: 95 Period size: 24 Copynumber: 2.8 Consensus size: 25 37860939 CTCTTTTAAT * 37860949 AACTGGGGCAAAGCCCTTTTTGATA 1 AACTGGGGCAAAGCCCTTTTCGATA * * 37860974 AACTGGGGCAAAGTCC-TTTCGGTA 1 AACTGGGGCAAAGCCCTTTTCGATA * 37860998 AACTGGGGCATAGCCCTTTT 1 AACTGGGGCAAAGCCCTTTT 37861018 AGCACTTCCT Statistics Matches: 38, Mismatches: 5, Indels: 2 0.84 0.11 0.04 Matches are distributed among these distances: 24 20 0.53 25 18 0.47 ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28 Consensus pattern (25 bp): AACTGGGGCAAAGCCCTTTTCGATA Found at i:37861435 original size:27 final size:27 Alignment explanation
Indices: 37861220--37861442 Score: 286 Period size: 27 Copynumber: 8.3 Consensus size: 27 37861210 GAGGCAAAAT * * 37861220 GGTAATTTTACCCCACAGGGGTATCTT- 1 GGTAATTCTACCCTACAGGGGTAT-TTC * * 37861247 GGTAATTCTACCCTACAAGGGTATTTT 1 GGTAATTCTACCCTACAGGGGTATTTC * * * 37861274 GGTATTTCTACCATACAAGGGTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC * * 37861301 TGTAATTCTACCCTACAGGGGTATTTT 1 GGTAATTCTACCCTACAGGGGTATTTC * * 37861328 AGTAATTCTACCCTATAGGGGTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC * * 37861355 GGTAATTCTACCCTACAGGGTTATTTT 1 GGTAATTCTACCCTACAGGGGTATTTC * 37861382 GGTAATTCTACCCTACAGGGTTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC * 37861409 AGTAATTCTACCCTACAGGGGTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC * 37861436 AGTAATT 1 GGTAATT 37861443 TTGCAAACTG Statistics Matches: 174, Mismatches: 21, Indels: 2 0.88 0.11 0.01 Matches are distributed among these distances: 26 2 0.01 27 172 0.99 ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37 Consensus pattern (27 bp): GGTAATTCTACCCTACAGGGGTATTTC Found at i:37861457 original size:27 final size:27 Alignment explanation
Indices: 37861427--37861603 Score: 157 Period size: 27 Copynumber: 6.6 Consensus size: 27 37861417 TACCCTACAG * * 37861427 GGGTATTTCAGTAATTTTGCAAACTGA 1 GGGTATTTTAGTAATTTTACAAACTGA * 37861454 GGGTATTTTGGTAATTTTACAAA-TCGA 1 GGGTATTTTAGTAATTTTACAAACT-GA * * 37861481 AGGTATTTTAGTAATTTTACAATC-GA 1 GGGTATTTTAGTAATTTTACAAACTGA * * * 37861507 CGGTA-TTTCGATATTTTTACAAA-TCGA 1 GGGTATTTTAG-TAATTTTACAAACT-GA ** * * 37861534 GGGTATTTGGGTAATTTTATAAATTGA 1 GGGTATTTTAGTAATTTTACAAACTGA * * * 37861561 GGGTACTTTGGTAATTTTAC-AACTGG 1 GGGTATTTTAGTAATTTTACAAACTGA 37861587 GGGTATTTTAGTAATTT 1 GGGTATTTTAGTAATTT 37861604 GGTAAACTAA Statistics Matches: 121, Mismatches: 22, Indels: 15 0.77 0.14 0.09 Matches are distributed among these distances: 25 4 0.03 26 36 0.30 27 77 0.64 28 4 0.03 ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42 Consensus pattern (27 bp): GGGTATTTTAGTAATTTTACAAACTGA Found at i:37861461 original size:81 final size:79 Alignment explanation
Indices: 37861219--37861469 Score: 267 Period size: 81 Copynumber: 3.1 Consensus size: 79 37861209 AGAGGCAAAA * * * * * 37861219 TGGTAATTTTACCCCACAGGGGTATCTTGGTAATTCTACCCTACAAGGGTATTTTGGT-ATTTCT 1 TGGTAATTCTACCCTACAGGGGTAT-TTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTT-T * 37861283 ACCATAC-AAGGGTATTT 64 --CAAACTAAGGGTATTT * * 37861300 CT-GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCT 1 -TGGTAATTCTACCCTACAGGGGTA-TTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTT ** 37861364 -ACCCTACAGGGTTATTT 64 CAAACTA-AGGG-TATTT * * 37861381 TGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTG 1 TGGTAATTCTACCCTACAGGGGTATTT-AGTAATTCTACCCTACAGGGGTATTTCGGTAATTTT- * 37861446 CAAACTGAGGGTATTT 64 CAAACTAAGGGTATTT 37861462 TGGTAATT 1 TGGTAATT 37861470 TTACAAATCG Statistics Matches: 144, Mismatches: 16, Indels: 19 0.80 0.09 0.11 Matches are distributed among these distances: 78 2 0.01 79 1 0.01 80 8 0.06 81 121 0.84 82 9 0.06 83 3 0.02 ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38 Consensus pattern (79 bp): TGGTAATTCTACCCTACAGGGGTATTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTCA AACTAAGGGTATTT Found at i:37861468 original size:54 final size:53 Alignment explanation
Indices: 37861238--37861469 Score: 227 Period size: 54 Copynumber: 4.3 Consensus size: 53 37861228 TACCCCACAG * * * * 37861238 GGGTATCTTGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCTAC-CATACAA 1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACAC-TA-AA * * 37861292 GGGTATTTCT-GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAG 1 GGGTATTT-TGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACACTA-AA * * * * * 37861346 GGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTGGTAATTCTACCCTACA 1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACACTAAA ** * * * * 37861399 GGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTGCAAACT-GA 1 GGG-TATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCT--ACACTAAA 37861454 GGGTATTTTGGTAATT 1 GGGTATTTTGGTAATT 37861470 TTACAAATCG Statistics Matches: 151, Mismatches: 21, Indels: 12 0.82 0.11 0.07 Matches are distributed among these distances: 53 3 0.02 54 139 0.92 55 6 0.04 56 3 0.02 ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38 Consensus pattern (53 bp): GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACACTAAA Found at i:37861488 original size:81 final size:80 Alignment explanation
Indices: 37861239--37861496 Score: 204 Period size: 81 Copynumber: 3.2 Consensus size: 80 37861229 ACCCCACAGG * * * ** * * 37861239 GGTATCTTGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCT-ACCATACAAGGG-TATTTCT 1 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAAC-TAC-AGGGTTATTT-T ** * 37861302 -GTAATTCTACCCTACAGG 63 GGTAATTCTACAATACA-A * * ** 37861320 GGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTGGT 1 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAACTACAGGGTTATTTTGGT ** * 37861385 AATTCTACCCTACAG 66 AATTCTACAATACAA * * * 37861400 GGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTGCAAACT-GAGGG-TATTTT 1 GG-TATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCT--AAACTACAGGGTTATTTT * 37861463 GGTAATTTTACAA-ATCGAA 63 GGTAATTCTACAATA-C-AA 37861482 GGTATTTTAGTAATT 1 GGTATTTTAGTAATT 37861497 TTACAATCGA Statistics Matches: 150, Mismatches: 19, Indels: 16 0.81 0.10 0.09 Matches are distributed among these distances: 80 9 0.06 81 129 0.86 82 9 0.06 83 3 0.02 ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39 Consensus pattern (80 bp): GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAACTACAGGGTTATTTTGGT AATTCTACAATACAA Found at i:37861591 original size:53 final size:52 Alignment explanation
Indices: 37861427--37861603 Score: 185 Period size: 53 Copynumber: 3.3 Consensus size: 52 37861417 TACCCTACAG * * * 37861427 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAATCGA 1 GGGTATTTTAGTAATTTT-AAAATTGAGGGTA-TTTGGTAATTTTACAAATCGA * * * * * * 37861481 AGGTATTTTAGTAATTTTACAATCGACGGTATTTCGATATTTTTACAAATCGA 1 GGGTATTTTAGTAATTTTAAAATTGAGGGTATTT-GGTAATTTTACAAATCGA ** * * 37861534 GGGTATTTGGGTAATTTTATAAATTGAGGGTACTTTGGTAATTTTACAACT-GG 1 GGGTATTTTAGTAATTTTA-AAATTGAGGGTA-TTTGGTAATTTTACAAATCGA 37861587 GGGTATTTTAGTAATTT 1 GGGTATTTTAGTAATTT 37861604 GGTAAACTAA Statistics Matches: 99, Mismatches: 21, Indels: 7 0.78 0.17 0.06 Matches are distributed among these distances: 52 3 0.03 53 56 0.57 54 37 0.37 55 3 0.03 ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42 Consensus pattern (52 bp): GGGTATTTTAGTAATTTTAAAATTGAGGGTATTTGGTAATTTTACAAATCGA Found at i:37861592 original size:80 final size:80 Alignment explanation
Indices: 37861426--37861603 Score: 209 Period size: 80 Copynumber: 2.2 Consensus size: 80 37861416 CTACCCTACA * * * 37861426 GGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTTA 1 GGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTGGGTAATTTTACAAATCGAAGGTACTTTA 37861491 GTAATTTTACAATCG 66 GTAATTTTACAATCG ** * * * * 37861506 ACGGTATTTC-GATATTTTTACAAA-TCGAGGGTATTTGGGTAATTTTATAAATTGAGGGTACTT 1 GGGGTATTTCAG-TAATTTTACAAACT-GAGGGTATTTGGGTAATTTTACAAATCGAAGGTACTT * 37861569 TGGTAATTTTACAA-CTG 64 TAGTAATTTTACAATC-G * 37861586 GGGGTATTTTAGTAATTT 1 GGGGTATTTCAGTAATTT 37861604 GGTAAACTAA Statistics Matches: 80, Mismatches: 14, Indels: 8 0.78 0.14 0.08 Matches are distributed among these distances: 79 3 0.04 80 76 0.95 81 1 0.01 ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42 Consensus pattern (80 bp): GGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTGGGTAATTTTACAAATCGAAGGTACTTTA GTAATTTTACAATCG Found at i:37865167 original size:27 final size:27 Alignment explanation
Indices: 37865135--37865194 Score: 86 Period size: 27 Copynumber: 2.2 Consensus size: 27 37865125 ATACATCTCA 37865135 TAGGGGCATATCAGTCATTTTA-CAAT 1 TAGGGGCATATCAGTCATTTTATCAAT * * 37865161 GTAGGGGCATTTTAGTCATTTTATCAAT 1 -TAGGGGCATATCAGTCATTTTATCAAT 37865189 TAGGGG 1 TAGGGG 37865195 TTCAGGTACA Statistics Matches: 30, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 27 26 0.87 28 4 0.13 ACGTcount: A:0.27, C:0.12, G:0.25, T:0.37 Consensus pattern (27 bp): TAGGGGCATATCAGTCATTTTATCAAT Found at i:37866806 original size:28 final size:28 Alignment explanation
Indices: 37866745--37866840 Score: 115 Period size: 28 Copynumber: 3.4 Consensus size: 28 37866735 TATTAAGTCC * * 37866745 CACACTCAGTGCTATATAATC-AACTAG 1 CACACTTAGTGCTATATAATCAAACTCG 37866772 CACACTTAGTGCTATATAATCAAACTCG 1 CACACTTAGTGCTATATAATCAAACTCG * * * 37866800 CACACTTAGTGCTGTACAATTTAAAC-CTG 1 CACACTTAGTGCTATATAA-TCAAACTC-G 37866829 CACACTTAGTGC 1 CACACTTAGTGC 37866841 CAATCTAATG Statistics Matches: 61, Mismatches: 5, Indels: 4 0.87 0.07 0.06 Matches are distributed among these distances: 27 20 0.33 28 23 0.38 29 18 0.30 ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28 Consensus pattern (28 bp): CACACTTAGTGCTATATAATCAAACTCG Found at i:37875048 original size:29 final size:27 Alignment explanation
Indices: 37875030--37875099 Score: 113 Period size: 27 Copynumber: 2.6 Consensus size: 27 37875020 ATATTAAGTC 37875030 CGCACACTCAGTGCTATATAATCAACT 1 CGCACACTCAGTGCTATATAATCAACT * 37875057 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTCAGTGCTATATAATC-AACT * 37875085 CGCACACTTAGTGCT 1 CGCACACTCAGTGCT 37875100 GTACAATTTA Statistics Matches: 41, Mismatches: 1, Indels: 1 0.95 0.02 0.02 Matches are distributed among these distances: 27 22 0.54 28 19 0.46 ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27 Consensus pattern (27 bp): CGCACACTCAGTGCTATATAATCAACT Found at i:37875093 original size:28 final size:28 Alignment explanation
Indices: 37875030--37875127 Score: 135 Period size: 28 Copynumber: 3.5 Consensus size: 28 37875020 ATATTAAGTC * 37875030 CGCACACTCAGTGCTATATAATC-AACT 1 CGCACACTTAGTGCTATATAATCAAACT 37875057 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * * * * 37875085 CGCACACTTAGTGCTGTACAATTTAAACC 1 CGCACACTTAGTGCTATATAA-TCAAACT 37875114 CGCACACTTAGTGC 1 CGCACACTTAGTGC 37875128 CAATCTCATG Statistics Matches: 64, Mismatches: 5, Indels: 2 0.90 0.07 0.03 Matches are distributed among these distances: 27 22 0.34 28 23 0.36 29 19 0.30 ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:37878505 original size:13 final size:13 Alignment explanation
Indices: 37878487--37878521 Score: 61 Period size: 13 Copynumber: 2.7 Consensus size: 13 37878477 CGGCTAACTT 37878487 ACATAATTAAATA 1 ACATAATTAAATA 37878500 ACATAATTAAATA 1 ACATAATTAAATA * 37878513 AAATAATTA 1 ACATAATTA 37878522 TTCATATAAT Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 13 21 1.00 ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31 Consensus pattern (13 bp): ACATAATTAAATA Found at i:37878746 original size:10 final size:9 Alignment explanation
Indices: 37878730--37878790 Score: 50 Period size: 10 Copynumber: 6.1 Consensus size: 9 37878720 AAATGAAGAA 37878730 TAAATGAGC 1 TAAATGAGC 37878739 TGAAATGAGC 1 T-AAATGAGC 37878749 TAAATTCGAGC 1 TAAA-T-GAGC ** 37878760 TCAAGCGAGC 1 T-AAATGAGC 37878770 TAAATCGAGC 1 TAAAT-GAGC 37878780 TCAAATGAGC 1 T-AAATGAGC 37878790 T 1 T 37878791 GATGGAAGCT Statistics Matches: 42, Mismatches: 4, Indels: 11 0.74 0.07 0.19 Matches are distributed among these distances: 9 6 0.14 10 25 0.60 11 9 0.21 12 2 0.05 ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21 Consensus pattern (9 bp): TAAATGAGC Found at i:37878789 original size:20 final size:20 Alignment explanation
Indices: 37878730--37878790 Score: 79 Period size: 20 Copynumber: 3.0 Consensus size: 20 37878720 AAATGAAGAA * 37878730 TAAAT-GAGCTGAAATGAGC 1 TAAATCGAGCTCAAATGAGC ** 37878749 TAAATTCGAGCTCAAGCGAGC 1 TAAA-TCGAGCTCAAATGAGC 37878770 TAAATCGAGCTCAAATGAGC 1 TAAATCGAGCTCAAATGAGC 37878790 T 1 T 37878791 GATGGAAGCT Statistics Matches: 35, Mismatches: 5, Indels: 3 0.81 0.12 0.07 Matches are distributed among these distances: 19 4 0.11 20 16 0.46 21 15 0.43 ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21 Consensus pattern (20 bp): TAAATCGAGCTCAAATGAGC Found at i:37910436 original size:46 final size:47 Alignment explanation
Indices: 37910375--37910553 Score: 190 Period size: 46 Copynumber: 3.9 Consensus size: 47 37910365 AACCCGAGCA * 37910375 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGCTCGAG-CG 1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACG * * 37910421 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG 1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GA-GAC--G * * * * * 37910472 TT-ACAT--TTCA-CGAACTCGGACTCAACTCAACGAGTTCG-GACG 1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACG * * 37910514 TTCGCATCCATAAGTGAAATCAGACTCAACTCAACAAGTT 1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTT 37910554 TAGATGCCCA Statistics Matches: 110, Mismatches: 14, Indels: 18 0.77 0.10 0.13 Matches are distributed among these distances: 42 3 0.03 43 3 0.03 44 2 0.02 45 2 0.02 46 62 0.56 47 28 0.25 48 3 0.03 49 1 0.01 50 3 0.03 51 3 0.03 ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23 Consensus pattern (47 bp): TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACG Found at i:37910560 original size:93 final size:93 Alignment explanation
Indices: 37910390--37910561 Score: 265 Period size: 93 Copynumber: 1.8 Consensus size: 93 37910380 ATCCATAAGT * * 37910390 GAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA * * 37910455 CGAGTTCGGATGCCTAGTTACATTTCAC 66 CAAGTTCAGATGCCTAGTTACATTTCAC * * 37910483 GAACTCGGACTCAACTCAACGAGTTCG-GACGTTCGCATCCATAAGTGAAATCAGACTCAACTCA 1 GAACTCAGACTCAACTCAACGAGCTCGAG-CGTTCGCATCCATAAGTGAAATCAGACTCAACTCA * 37910547 ACAAGTTTAGATGCC 65 ACAAGTTCAGATGCC 37910562 CAAATATCCA Statistics Matches: 71, Mismatches: 7, Indels: 2 0.89 0.09 0.03 Matches are distributed among these distances: 92 1 0.01 93 70 0.99 ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22 Consensus pattern (93 bp): GAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA CAAGTTCAGATGCCTAGTTACATTTCAC Found at i:37913936 original size:42 final size:42 Alignment explanation
Indices: 37913879--37914033 Score: 179 Period size: 42 Copynumber: 3.7 Consensus size: 42 37913869 CTAAGACTAT * * 37913879 GTGTAAGACCTTATCTGGGATATGGCATCTATATGAGACTTC 1 GTGTAAGACCATATCTGGGATATGGCATCTATAAGAGACTTC * * 37913921 GTGTAAGACCATATCTAGGATATGGCATCGATAAGAGACTTC 1 GTGTAAGACCATATCTGGGATATGGCATCTATAAGAGACTTC * * * * 37913963 GTGTAAGACCATAGCTGGGCTATTGGCAT-TGATACGAGA-TCCC 1 GTGTAAGACCATATCTGGGATA-TGGCATCT-ATAAGAGACT-TC * * 37914006 ATGTAAGACCATATATGGGATATGGCAT 1 GTGTAAGACCATATCTGGGATATGGCAT 37914034 TGGTATGGTA Statistics Matches: 96, Mismatches: 14, Indels: 6 0.83 0.12 0.05 Matches are distributed among these distances: 42 64 0.67 43 32 0.33 ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28 Consensus pattern (42 bp): GTGTAAGACCATATCTGGGATATGGCATCTATAAGAGACTTC Found at i:37914231 original size:15 final size:16 Alignment explanation
Indices: 37914205--37914234 Score: 53 Period size: 15 Copynumber: 1.9 Consensus size: 16 37914195 ATGAACCCTC 37914205 AGTAAGGTTATGATTG 1 AGTAAGGTTATGATTG 37914221 AGTAA-GTTATGATT 1 AGTAAGGTTATGATT 37914235 ACAAGATCTT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 9 0.64 16 5 0.36 ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40 Consensus pattern (16 bp): AGTAAGGTTATGATTG Found at i:37921217 original size:11 final size:11 Alignment explanation
Indices: 37921197--37921227 Score: 55 Period size: 11 Copynumber: 2.9 Consensus size: 11 37921187 ATAAATAACT 37921197 AAAA-GAAAAG 1 AAAATGAAAAG 37921207 AAAATGAAAAG 1 AAAATGAAAAG 37921218 AAAATGAAAA 1 AAAATGAAAA 37921228 TATTAAATAA Statistics Matches: 20, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 10 4 0.20 11 16 0.80 ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06 Consensus pattern (11 bp): AAAATGAAAAG Found at i:37921388 original size:11 final size:11 Alignment explanation
Indices: 37921367--37921398 Score: 55 Period size: 11 Copynumber: 2.8 Consensus size: 11 37921357 AAAAATACAC 37921367 AAATCAAAAATA 1 AAAT-AAAAATA 37921379 AAATAAAAATA 1 AAATAAAAATA 37921390 AAATAAAAA 1 AAATAAAAA 37921399 GGATAATAAG Statistics Matches: 20, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 11 16 0.80 12 4 0.20 ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16 Consensus pattern (11 bp): AAATAAAAATA Found at i:37921474 original size:3 final size:3 Alignment explanation
Indices: 37921466--37921555 Score: 62 Period size: 3 Copynumber: 30.0 Consensus size: 3 37921456 AAATAAAACA * * 37921466 AAT AAT AAT AGA- AAT AAT AAT AAT GAGAC AAT AAT AAT AA- AAT AAAG 1 AAT AAT AAT A-AT AAT AAT AAT AAT -A-AT AAT AAT AAT AAT AAT -AAT * * * * 37921513 AAT AAT AA- CAT CAT CAT AAT AAT AAA AAT AAT AA- AAT AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 37921556 GTTGAAATTT Statistics Matches: 71, Mismatches: 8, Indels: 16 0.75 0.08 0.17 Matches are distributed among these distances: 2 6 0.08 3 59 0.83 4 5 0.07 5 1 0.01 ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26 Consensus pattern (3 bp): AAT Found at i:37921499 original size:29 final size:29 Alignment explanation
Indices: 37921466--37921551 Score: 86 Period size: 29 Copynumber: 2.9 Consensus size: 29 37921456 AAATAAAACA * * 37921466 AATAATAATAGAAATAATAATAATGAGA-C 1 AATAATAATA-AAATAATAATAATAACATC * 37921495 AATAATAATAAAATAAAGAATAATAACATC 1 AATAATAATAAAAT-AATAATAATAACATC 37921525 ATCATAATAATAAAAATAATAA-AATAA 1 A--ATAATAAT-AAAATAATAATAATAA 37921552 TAATGTTGAA Statistics Matches: 48, Mismatches: 4, Indels: 8 0.80 0.07 0.13 Matches are distributed among these distances: 28 4 0.08 29 20 0.42 30 2 0.04 31 5 0.10 32 12 0.25 33 5 0.10 ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24 Consensus pattern (29 bp): AATAATAATAAAATAATAATAATAACATC Found at i:37922239 original size:11 final size:11 Alignment explanation
Indices: 37922225--37922249 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 37922215 ATAATAGATT 37922225 AAAAATAAAGA 1 AAAAATAAAGA 37922236 AAAAATAAAGA 1 AAAAATAAAGA 37922247 AAA 1 AAA 37922250 TAAAAGACCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08 Consensus pattern (11 bp): AAAAATAAAGA Found at i:37923041 original size:44 final size:44 Alignment explanation
Indices: 37922878--37923125 Score: 236 Period size: 44 Copynumber: 5.7 Consensus size: 44 37922868 TTTATTCCAA * * * * 37922878 TCCACTGTATCTTCAGGGAGATAAGGTTTACTATCTTCAATCTAC 1 TCCACTGTAACTTCAGGGAGATAAGATTT-GTAACTTCAATCTAC * * * * * ** 37922923 TCCACTGTAGCTTCAGGGAGTTGAGATTCGTAACTTCAACCCGC 1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC * 37922967 TCCACTGTAACTTCAGGGAGATAAGGTTTGTAACTTCAATCTAC 1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC ** * ** * 37923011 TCCACTGTGTCTTTAGGGAGATAAGATTTGT--GGT-AATCTGC 1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC * * * * 37923052 TCCTCTGCAACTTCAGAGG-TATGAGATTTGTAACTTCAATCTAC 1 TCCACTGTAACTTCAG-GGAGATAAGATTTGTAACTTCAATCTAC * 37923096 TCCACTG-AACTTAAGGGAGATAAGATTTGT 1 TCCACTGTAACTTCAGGGAGATAAGATTTGT 37923126 TATTTTTGAC Statistics Matches: 159, Mismatches: 39, Indels: 12 0.76 0.19 0.06 Matches are distributed among these distances: 41 27 0.17 42 5 0.03 43 18 0.11 44 85 0.53 45 24 0.15 ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33 Consensus pattern (44 bp): TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC Found at i:37923634 original size:181 final size:180 Alignment explanation
Indices: 37923227--37923886 Score: 763 Period size: 181 Copynumber: 3.6 Consensus size: 180 37923217 TTGTAACTTG * * * * ** * 37923227 TAGCTTAAATATGTTCCATTGCAACTTCAGGGAAATAAGA-TCTGCTATCTTCAACCTGCTCTAC 1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTC-GCTATCTTCAGTCTGCTCCAC * * * * * * * 37923291 TGCAACTTTAGGGAGATAAG--GTTAATGGCTTTAATCTACTCGACTACAACTTCAGGGAGATAA 65 TGCAACTTCAGGGAGATAAGACTTTAA---CTTCAACCTGCTCCACTACTACTTCAGGGAGATAA * * * * * * 37923354 GATTCGCCATGGTAGACTTGATCTGACCTACTGCAACTTCAGAG-GTATAGGAT-TTGTGACTTA 127 GGTT-----TGCT--A--TGATCTGATCTACTGCAACTTCAGAGAG-ATAAGATCTT-TTATTTA 37923417 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT 1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT * * * * 37923482 GTAACTTCAGGGAGATAAGACTTTAACTTTAACCTGTTCCACTACTACTTCAGGGAGATAATGTT 66 GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTACTACTTCAGGGAGATAAGGTT * 37923547 TGCTATGATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTA 131 TGCTATGATCTGATCTACTGCAACTTCAGAGAGATAAGATCT-TTTATTTA * * * * 37923598 TAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCTACT 1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT * * * * 37923663 ACAACTTTAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTGCTACTTTAGGGAGATAAGGTT 66 GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTACTACTTCAGGGAGATAAGGTT * * * 37923728 TGCTATGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTTTATTTG 131 TGCTATGATCTGATCTACTGCAACTTCAGAGAGATAAGATCT-TTTATTTA * * * 37923779 TATCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTCCACT 1 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT * * 37923844 GCAACTTCAGAGAGATGAGACTTTAACTTCAACCTGCTCCACT 66 GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACT 37923887 GCAACTCCAA Statistics Matches: 414, Mismatches: 50, Indels: 21 0.85 0.10 0.04 Matches are distributed among these distances: 180 30 0.07 181 269 0.65 182 2 0.00 184 3 0.01 189 32 0.08 190 72 0.17 191 2 0.00 192 4 0.01 ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33 Consensus pattern (180 bp): TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCACT GCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTACTACTTCAGGGAGATAAGGTT TGCTATGATCTGATCTACTGCAACTTCAGAGAGATAAGATCTTTTATTTA Found at i:37923713 original size:43 final size:43 Alignment explanation
Indices: 37923612--37923892 Score: 190 Period size: 43 Copynumber: 6.3 Consensus size: 43 37923602 TTTAATCTAT * * * * * 37923612 TCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTCAGTCTGC 1 TCCACTGCAACTTTAGGGAGATAAGACTT--TAACTTCAATCTGC * * * 37923657 TCTACTACAACTTTAGGGAGATAAGACTTTAACTTCAACCTGC 1 TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAATCTGC * * * * 37923700 TCCACTGCTACTTTAGGGAGATAAG-GTTT-GCTAT-GATCTGC 1 TCCACTGCAACTTTAGGGAGATAAGACTTTAACT-TCAATCTGC * * * * 37923741 TCTACTGCAACTTTAGAGAGATAAGATCTGTTTATTTGTATCTTTAATCTGT 1 TCCACTGCAACTTTAGGGAGATAAGA-C--TTTA-----A-CTTCAATCTGC * * * * * 37923793 TCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGC 1 TCCACTGCAACTTTAGGGAGATAAGA--CTTTAACTTCAATCTGC * * * * 37923838 TCCACTGCAACTTCAGAGAGATGAGACTTTAACTTCAACCTGC 1 TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAATCTGC 37923881 TCCACTGCAACT 1 TCCACTGCAACT 37923893 CCAAAGAGAT Statistics Matches: 184, Mismatches: 38, Indels: 30 0.73 0.15 0.12 Matches are distributed among these distances: 41 29 0.16 42 4 0.02 43 58 0.32 45 58 0.32 51 4 0.02 52 29 0.16 53 2 0.01 ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33 Consensus pattern (43 bp): TCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAATCTGC Found at i:37923843 original size:45 final size:45 Alignment explanation
Indices: 37923424--37923910 Score: 180 Period size: 43 Copynumber: 10.8 Consensus size: 45 37923414 TTATAGCTTT * * * * * 37923424 AATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTC 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * * * * 37923469 AGTCTGCTCCACTGTAACTTCAGGGAGATAAGA--CTTTAACTTT 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * * * 37923512 AACCTGTTCCACTACTACTTCAGGGAGAT-A-A-T-GTT-TGCTAT- 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTAT-CT-TC * * * ** * 37923553 GATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTATAGCTTT 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAG----A-TTCGTTAT--CTTC ** * * * * * * 37923605 AATCTATTCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTC 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * * * * * 37923650 AGTCTGCTCTACTACAACTTTAGGGAGATAAGA--CTTTAACTTC 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * * * * * 37923693 AACCTGCTCCACTGCTACTTTAGGGAGATAAGGTTTGCTA---T- 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * * 37923734 GATCTGCTCTACTGCAACTTTAGAGAGATAAGA-TCTGTTTATTTGTATCTTT 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTC-G------T-TATCTTC * * * 37923786 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTATCTTC 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * * 37923831 AGTCTGCTCCACTGCAACTTCAGAGAGATGAGA--CTTTAACTTC 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC * * * 37923874 AACCTGCTCCACTGCAACTCCAAAGAGATAAGATTCG 1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCG 37923911 CCATTATGAC Statistics Matches: 327, Mismatches: 83, Indels: 64 0.69 0.18 0.14 Matches are distributed among these distances: 40 1 0.00 41 56 0.17 42 4 0.01 43 98 0.30 45 94 0.29 46 1 0.00 47 6 0.02 48 3 0.01 49 1 0.00 50 2 0.01 51 3 0.01 52 56 0.17 53 2 0.01 ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33 Consensus pattern (45 bp): AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGTTATCTTC Found at i:37925001 original size:139 final size:139 Alignment explanation
Indices: 37924754--37925113 Score: 555 Period size: 139 Copynumber: 2.6 Consensus size: 139 37924744 TATCTTCAAT ** * * ** 37924754 CAAAATTTGAGTTGCCCTTTTTAGGTTTTCAACTC-AAAACCCCTTTGGTCTCAAGGTGCCCTTT 1 CAAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTTT * 37924818 GCGGGTTTTGGCCTTGGCCTCTCTATGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCCC 66 GCGGG-TTTGGCCTTGGCCTCTCTAAGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCCC 37924883 ATTCTTTGG- 130 ATTCTTTGGA * * 37924892 CTAAAATTTGAGCCGCCCTTTTCGGGTTTTCAACTCAAAAACTCTTTTGGTCTCAATATGCCCTT 1 C-AAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTT 37924957 TGCGGGTGTTGGCCTTGGCCTCTCTAAG-TTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCC 65 TGCGGGT-TTGGCCTTGGCCTCTCTAAGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCC 37925021 CATTCTTTGGA 129 CATTCTTTGGA * * 37925032 CAAAATTTGAGCCACCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATACGCCCTTT 1 CAAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTTT * * 37925097 GTGGGTTTTGCCTTGGC 66 GCGGGTTTGGCCTTGGC 37925114 TCCTCCTTTT Statistics Matches: 203, Mismatches: 15, Indels: 8 0.90 0.07 0.04 Matches are distributed among these distances: 138 11 0.05 139 142 0.70 140 50 0.25 ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38 Consensus pattern (139 bp): CAAAATTTGAGCCGCCCTTTTTGGGTTTTCAACTCAAAAACTCCTTTGGTCTCAATATGCCCTTT GCGGGTTTGGCCTTGGCCTCTCTAAGTTTTTTTTTAAGGTGAAATGCCTATTGACTGAATGCCCA TTCTTTGGA Found at i:37925133 original size:1 final size:1 Alignment explanation
Indices: 37925127--37925189 Score: 54 Period size: 1 Copynumber: 63.0 Consensus size: 1 37925117 TCCTTTTCTA * * * * * * * * 37925127 TTTTTTTTCTTTTTCTTTTTTCTTTTCTTTTTTTTTCTTTTTCTTCTTTTTTTTTGTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37925190 AAAGAGTGAA Statistics Matches: 46, Mismatches: 16, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 1 46 1.00 ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87 Consensus pattern (1 bp): T Found at i:37925141 original size:6 final size:6 Alignment explanation
Indices: 37925120--37925187 Score: 63 Period size: 6 Copynumber: 11.7 Consensus size: 6 37925110 TGGCTCCTCC * 37925120 TTTTCT ATTT-T TTTTCT TTTTCT TTTT-T CTTTTC- TTTT-T TTTTCT 1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT TTTTCT TTTTCT * * 37925165 TTTTCT TCTTTTT TTTTGT TTTT 1 TTTTCT T-TTTCT TTTTCT TTTT 37925188 TTAAAGAGTG Statistics Matches: 52, Mismatches: 4, Indels: 12 0.76 0.06 0.18 Matches are distributed among these distances: 5 13 0.25 6 34 0.65 7 5 0.10 ACGTcount: A:0.01, C:0.12, G:0.01, T:0.85 Consensus pattern (6 bp): TTTTCT Found at i:37925144 original size:22 final size:22 Alignment explanation
Indices: 37925119--37925167 Score: 64 Period size: 22 Copynumber: 2.2 Consensus size: 22 37925109 TTGGCTCCTC 37925119 CTTTTCTATTTT-TTTTCTTTTT 1 CTTTTCTATTTTCTTTT-TTTTT * * 37925141 CTTTTTTCTTTTCTTTTTTTTT 1 CTTTTCTATTTTCTTTTTTTTT 37925163 CTTTT 1 CTTTT 37925168 TCTTCTTTTT Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 22 20 0.83 23 4 0.17 ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84 Consensus pattern (22 bp): CTTTTCTATTTTCTTTTTTTTT Found at i:37925159 original size:28 final size:29 Alignment explanation
Indices: 37925119--37925189 Score: 108 Period size: 29 Copynumber: 2.4 Consensus size: 29 37925109 TTGGCTCCTC 37925119 CTTTTCTATTTTTTTTCTTTTTCTT-TTTT 1 CTTTTCT-TTTTTTTTCTTTTTCTTCTTTT 37925148 CTTTTCTTTTTTTTTCTTTTTCTTCTTTT 1 CTTTTCTTTTTTTTTCTTTTTCTTCTTTT * * 37925177 TTTTTGTTTTTTT 1 CTTTTCTTTTTTT 37925190 AAAGAGTGAA Statistics Matches: 39, Mismatches: 2, Indels: 2 0.91 0.05 0.05 Matches are distributed among these distances: 28 17 0.44 29 22 0.56 ACGTcount: A:0.01, C:0.13, G:0.01, T:0.85 Consensus pattern (29 bp): CTTTTCTTTTTTTTTCTTTTTCTTCTTTT Found at i:37925179 original size:19 final size:17 Alignment explanation
Indices: 37925127--37925189 Score: 81 Period size: 18 Copynumber: 3.5 Consensus size: 17 37925117 TCCTTTTCTA 37925127 TTTTTTTTCTTTTTCTTT 1 TTTTTTTTCTTTTT-TTT * 37925145 TTTCTTTTCTTTTTTTT 1 TTTTTTTTCTTTTTTTT 37925162 TCTTTTTCTTCTTTTTTTT 1 T-TTTTT-TTCTTTTTTTT 37925181 TGTTTTTTT 1 T-TTTTTTT 37925190 AAAGAGTGAA Statistics Matches: 40, Mismatches: 3, Indels: 4 0.85 0.06 0.09 Matches are distributed among these distances: 17 4 0.10 18 19 0.47 19 17 0.43 ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87 Consensus pattern (17 bp): TTTTTTTTCTTTTTTTT Found at i:37927502 original size:24 final size:24 Alignment explanation
Indices: 37927474--37927522 Score: 80 Period size: 24 Copynumber: 2.0 Consensus size: 24 37927464 TCAGGGTTGA 37927474 TCTTCTAGCACTTTCCCTTGCATC 1 TCTTCTAGCACTTTCCCTTGCATC * * 37927498 TCTTCTGGCACTTTGCCTTGCATC 1 TCTTCTAGCACTTTCCCTTGCATC 37927522 T 1 T 37927523 ATCTTCCCAC Statistics Matches: 23, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 24 23 1.00 ACGTcount: A:0.10, C:0.35, G:0.12, T:0.43 Consensus pattern (24 bp): TCTTCTAGCACTTTCCCTTGCATC Found at i:37930696 original size:22 final size:21 Alignment explanation
Indices: 37930642--37930696 Score: 58 Period size: 22 Copynumber: 2.5 Consensus size: 21 37930632 AAGCTAATTG 37930642 TAAAAATAAATAAATAAATAAA 1 TAAAAA-AAATAAATAAATAAA 37930664 TAAAAGAAAATAAA-AATATTAAA 1 TAAAA-AAAATAAATAA-A-TAAA * 37930687 TAAAACAAAT 1 TAAAAAAAAT 37930697 TAAGAAATGA Statistics Matches: 29, Mismatches: 1, Indels: 6 0.81 0.03 0.17 Matches are distributed among these distances: 21 2 0.07 22 17 0.59 23 10 0.34 ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22 Consensus pattern (21 bp): TAAAAAAAATAAATAAATAAA Found at i:37930807 original size:4 final size:4 Alignment explanation
Indices: 37930798--37930839 Score: 59 Period size: 4 Copynumber: 10.5 Consensus size: 4 37930788 ATGAAATGAC * 37930798 AATA AATA AACA AATCA AA-A AATA AATA AATA AATA AATA AA 1 AATA AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AA 37930840 AAAGATAATA Statistics Matches: 34, Mismatches: 2, Indels: 4 0.85 0.05 0.10 Matches are distributed among these distances: 3 3 0.09 4 28 0.82 5 3 0.09 ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19 Consensus pattern (4 bp): AATA Found at i:37930907 original size:3 final size:3 Alignment explanation
Indices: 37930899--37930995 Score: 108 Period size: 3 Copynumber: 32.0 Consensus size: 3 37930889 AAACAAATGA * 37930899 AAT AAT AAT AAT AAT AAT AAT GAGAC AAT AAT AAT AA- AAT AAAT AAT 1 AAT AAT AAT AAT AAT AAT AAT -A-AT AAT AAT AAT AAT AAT -AAT AAT * * * * 37930946 AAT AA- CAT AAT AAT AAG AAT AAT AAT ACT GAT AAT AAT AAT AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 37930993 AAT 1 AAT 37930996 GTTGAAATTA Statistics Matches: 79, Mismatches: 10, Indels: 10 0.80 0.10 0.10 Matches are distributed among these distances: 2 3 0.04 3 70 0.89 4 5 0.06 5 1 0.01 ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29 Consensus pattern (3 bp): AAT Found at i:37936574 original size:43 final size:42 Alignment explanation
Indices: 37936464--37936574 Score: 102 Period size: 43 Copynumber: 2.6 Consensus size: 42 37936454 GGTTTATGTA * * * * * 37936464 TAAGACCATGTCTAGGACATCGGCATCGTATTTGATTTCATG 1 TAAGACCACGTCTGGGACGTCGGCATCGTATATGATTACATG * * 37936506 TAAGACC-CTGTCTGGGATAG-AGGCATCG-ATAATGAGTTACATG 1 TAAGACCAC-GTCTGGGA-CGTCGGCATCGTAT-ATGA-TTACATG 37936549 TAAGACCACGTCTGGGACGTCGGCAT 1 TAAGACCACGTCTGGGACGTCGGCAT 37936575 TGTACTTGTT Statistics Matches: 54, Mismatches: 9, Indels: 11 0.73 0.12 0.15 Matches are distributed among these distances: 41 2 0.04 42 25 0.46 43 26 0.48 44 1 0.02 ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27 Consensus pattern (42 bp): TAAGACCACGTCTGGGACGTCGGCATCGTATATGATTACATG Found at i:37939101 original size:39 final size:40 Alignment explanation
Indices: 37938950--37939164 Score: 289 Period size: 40 Copynumber: 5.5 Consensus size: 40 37938940 AAGCCAAGTA * * * * 37938950 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG * * 37938989 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 37939029 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 37939069 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * * 37939108 CCTTC-GGACTTAGCCCGGA-ACTAGTCACTAG-GCAAATG 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG 37939146 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 37939165 TTATCATCCA Statistics Matches: 161, Mismatches: 10, Indels: 10 0.89 0.06 0.06 Matches are distributed among these distances: 38 23 0.14 39 62 0.39 40 76 0.47 ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:37939108 original size:79 final size:78 Alignment explanation
Indices: 37938950--37939163 Score: 283 Period size: 79 Copynumber: 2.7 Consensus size: 78 37938940 AAGCCAAGTA * * * * * 37938950 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAG 1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCC-GATATAG * 37939014 TAACTCGCACCAATG 64 TAACTCGCACAAATG 37939029 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGT 1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGT 37939094 AACTCGCACAAATG 65 AACTCGCACAAATG * * 37939108 CCTTC-GGACTTAGCCCGGA-ACTAGTCACTAG-GCAAATGCCTTCGGGACTTAGCCCG 1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG 37939164 GTTATCATCC Statistics Matches: 123, Mismatches: 9, Indels: 8 0.88 0.06 0.06 Matches are distributed among these distances: 77 25 0.20 78 22 0.18 79 39 0.32 80 37 0.30 ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23 Consensus pattern (78 bp): CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGTA ACTCGCACAAATG Found at i:37947085 original size:40 final size:40 Alignment explanation
Indices: 37947015--37947232 Score: 280 Period size: 40 Copynumber: 5.5 Consensus size: 40 37947005 AAGCCAAGTA * * * * * 37947015 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCGCTCGAATG 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG * * 37947054 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 37947094 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * 37947134 CCTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * ** 37947174 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCAAATG 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG 37947214 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 37947233 TTATCATCCA Statistics Matches: 161, Mismatches: 15, Indels: 5 0.89 0.08 0.03 Matches are distributed among these distances: 39 13 0.08 40 148 0.92 ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:37953368 original size:14 final size:14 Alignment explanation
Indices: 37953333--37953370 Score: 51 Period size: 14 Copynumber: 2.8 Consensus size: 14 37953323 TTTTCATTCA * 37953333 TTCTTTTA-TTTCT 1 TTCTTTTATTTTAT 37953346 TTCTTTTATTTTAT 1 TTCTTTTATTTTAT * 37953360 TTGTTTTATTT 1 TTCTTTTATTT 37953371 AATTACTTTA Statistics Matches: 22, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 13 8 0.36 14 14 0.64 ACGTcount: A:0.11, C:0.08, G:0.03, T:0.79 Consensus pattern (14 bp): TTCTTTTATTTTAT Found at i:37958908 original size:47 final size:47 Alignment explanation
Indices: 37958846--37959518 Score: 1144 Period size: 47 Copynumber: 14.4 Consensus size: 47 37958836 TTCAGCCAAG 37958846 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * 37958893 AAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37958939 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37958986 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * 37959033 AAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * * 37959078 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * 37959125 AAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA 1 AAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * 37959174 AAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37959220 AAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37959266 AAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37959312 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37959359 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA 37959406 AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * * * * * * * 37959452 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA * * 37959499 AAGTGCATAAATGTGATAAG 1 AAGTGTATATATGTGATAAG 37959519 TCCCGAAGGG Statistics Matches: 600, Mismatches: 18, Indels: 16 0.95 0.03 0.03 Matches are distributed among these distances: 45 56 0.09 46 200 0.33 47 298 0.50 49 46 0.08 ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29 Consensus pattern (47 bp): AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA Found at i:37958948 original size:93 final size:94 Alignment explanation
Indices: 37958846--37959518 Score: 1144 Period size: 93 Copynumber: 7.2 Consensus size: 94 37958836 TTCAGCCAAG * 37958846 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA 37958911 AGGCCTAAT-GCCGATGTGATGAATGTGA 66 AGGCCTAATGGCCGATGTGATGAATGTGA 37958939 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA 37959004 AGGCCTAATGGCCGATGTGATGAATGTGA 66 AGGCCTAATGGCCGATGTGATGAATGTGA * * 37959033 AAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA * 37959096 AGGCCTAATAGCCGATGTGATGAATGTGA 66 AGGCCTAATGGCCGATGTGATGAATGTGA * * 37959125 AAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA 1 AAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 37959190 TAAGGCCTAAT-GCCGATGTGATGAATGTGA 64 TAAGGCCTAATGGCCGATGTGATGAATGTGA 37959220 AAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGT-ATA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA 37959283 AGGCCTAATGGCCGATGTGATGAATGTGA 66 AGGCCTAATGGCCGATGTGATGAATGTGA 37959312 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA 37959377 AGGCCTAATGGCCGATGTGATGAATGTGA 66 AGGCCTAATGGCCGATGTGATGAATGTGA * 37959406 AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA * * * * * * 37959470 GGGCCGAGTGGCCAACGTGATGGATGTGA 66 AGGCCTAATGGCCGATGTGATGAATGTGA * * 37959499 AAGTGCATAAATGTGATAAG 1 AAGTGTATATATGTGATAAG 37959519 TCCCGAAGGG Statistics Matches: 558, Mismatches: 14, Indels: 16 0.95 0.02 0.03 Matches are distributed among these distances: 91 12 0.02 92 167 0.30 93 205 0.37 94 81 0.15 95 30 0.05 96 63 0.11 ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29 Consensus pattern (94 bp): AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA AGGCCTAATGGCCGATGTGATGAATGTGA Found at i:37959325 original size:281 final size:279 Alignment explanation
Indices: 37958846--37959518 Score: 1154 Period size: 281 Copynumber: 2.4 Consensus size: 279 37958836 TTCAGCCAAG 37958846 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA 37958911 AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG 66 AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG 37958976 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT 131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT * 37959041 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA 196 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA 37959106 GCCGATGTGATGAATGTGA 261 GCCGATGTGATGAATGTGA * 37959125 AAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA 1 AAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA 37959190 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATG 64 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG 37959254 TGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT 129 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG- * 37959318 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT 193 -TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT * 37959383 AATGGCCGATGTGATGAATGTGA 257 AATAGCCGATGTGATGAATGTGA * * 37959406 AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA 1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA * * * * * * * * 37959470 GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG 66 AGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG 37959519 TCCCGAAGGG Statistics Matches: 374, Mismatches: 15, Indels: 10 0.94 0.04 0.03 Matches are distributed among these distances: 278 46 0.12 279 92 0.25 280 33 0.09 281 203 0.54 ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29 Consensus pattern (279 bp): AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA GCCGATGTGATGAATGTGA Found at i:37959693 original size:37 final size:37 Alignment explanation
Indices: 37959637--37959715 Score: 115 Period size: 37 Copynumber: 2.1 Consensus size: 37 37959627 CCGAGCTCTA * * 37959637 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT 1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT * 37959674 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT 1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT 37959711 AAGAC 1 AAGAC 37959716 TTCGTAATAA Statistics Matches: 38, Mismatches: 3, Indels: 2 0.88 0.07 0.05 Matches are distributed among these distances: 37 37 0.97 38 1 0.03 ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25 Consensus pattern (37 bp): AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT Found at i:37961650 original size:43 final size:43 Alignment explanation
Indices: 37961580--37961681 Score: 197 Period size: 43 Copynumber: 2.4 Consensus size: 43 37961570 TTGGTTTTCA 37961580 GCACTAAGTGTGC-GGCAATAAGTGTTCACGGTTGTGAGATTG 1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG 37961622 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG 1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG 37961665 GCACTAAGTGTGCGGGC 1 GCACTAAGTGTGCGGGC 37961682 TTGAAATGCA Statistics Matches: 59, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 42 13 0.22 43 46 0.78 ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26 Consensus pattern (43 bp): GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG Found at i:37961698 original size:29 final size:30 Alignment explanation
Indices: 37961663--37961737 Score: 107 Period size: 29 Copynumber: 2.5 Consensus size: 30 37961653 GTTGTGAGAT * * * 37961663 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA 1 TGGCACTAAGTGTGCGAGCTTAAAAGTACA * 37961692 TGGCACTAAGTGTGCGAGTTTAAAAGTACA 1 TGGCACTAAGTGTGCGAGCTTAAAAGTACA 37961722 TGGCACTAAGTGTGCG 1 TGGCACTAAGTGTGCG 37961738 TGGTTGATTA Statistics Matches: 41, Mismatches: 4, Indels: 1 0.89 0.09 0.02 Matches are distributed among these distances: 29 22 0.54 30 19 0.46 ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25 Consensus pattern (30 bp): TGGCACTAAGTGTGCGAGCTTAAAAGTACA Found at i:37962147 original size:40 final size:40 Alignment explanation
Indices: 37962049--37962147 Score: 103 Period size: 40 Copynumber: 2.5 Consensus size: 40 37962039 TCGAATGATG * * 37962049 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATA 1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAA * * * * * 37962089 TCCGGACTAAGAT-TCGAAGGCATTGGTGC-GAGTTACTAAA 1 TCCGGGCTAAG-TCCCGAAGGC-TTGGTGCTAAGTGACCAAA 37962129 TCCGGGCTAAGTCCCGAAG 1 TCCGGGCTAAGTCCCGAAG 37962148 AGCAATCATG Statistics Matches: 47, Mismatches: 9, Indels: 6 0.76 0.15 0.10 Matches are distributed among these distances: 39 1 0.02 40 39 0.83 41 7 0.15 ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAA Found at i:37965753 original size:47 final size:47 Alignment explanation
Indices: 37965695--37966236 Score: 904 Period size: 47 Copynumber: 11.5 Consensus size: 47 37965685 ATTCAGCCAA 37965695 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 37965742 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 37965789 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 37965838 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 37965885 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 37965932 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 37965979 GAAAGTGTATATGTGTGATAAGGCCTAATAGCGCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGC-CGATGTGATGAATGT 37966027 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 37966074 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 37966121 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * * * * * * 37966168 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 37966215 GAAAGTGCATAAATGTGATAAG 1 GAAAGTGTATATATGTGATAAG 37966237 TCCCGAAGGG Statistics Matches: 475, Mismatches: 17, Indels: 6 0.95 0.03 0.01 Matches are distributed among these distances: 47 383 0.81 48 45 0.09 49 47 0.10 ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29 Consensus pattern (47 bp): GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT Found at i:37966110 original size:236 final size:236 Alignment explanation
Indices: 37965695--37966236 Score: 906 Period size: 236 Copynumber: 2.3 Consensus size: 236 37965685 ATTCAGCCAA 37965695 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA * 37965760 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG 66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG * 37965825 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG 130 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG * 37965890 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT 195 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT * * * 37965932 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 37965997 TAAGGCCTAATAGCGCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG 66 TAAGGCCTAATAGC-CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG * 37966061 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG 130 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG * 37966126 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT 195 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT * * * * * * * * * 37966168 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 37966233 TAAG 66 TAAG 37966237 TCCCGAAGGG Statistics Matches: 284, Mismatches: 20, Indels: 3 0.93 0.07 0.01 Matches are distributed among these distances: 236 187 0.66 237 75 0.26 238 22 0.08 ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29 Consensus pattern (236 bp): GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT Found at i:37966411 original size:37 final size:37 Alignment explanation
Indices: 37966355--37966433 Score: 115 Period size: 37 Copynumber: 2.1 Consensus size: 37 37966345 CCGAGCTCTA * * 37966355 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT 1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT * 37966392 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT 1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT 37966429 AAGAC 1 AAGAC 37966434 TTCGTAATAA Statistics Matches: 38, Mismatches: 3, Indels: 2 0.88 0.07 0.05 Matches are distributed among these distances: 37 37 0.97 38 1 0.03 ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25 Consensus pattern (37 bp): AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT Found at i:37971400 original size:40 final size:40 Alignment explanation
Indices: 37971343--37971600 Score: 333 Period size: 40 Copynumber: 6.5 Consensus size: 40 37971333 CGGATGATAA * * * 37971343 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT * 37971383 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * ** * 37971423 CCGGGTTAAGTCCCGATTGCATTTGTGTGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 37971463 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 37971503 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * * * 37971543 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGTTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT * * 37971583 CC-GGTTAAATCCCGAAGG 1 CCGGGCTAAGTCCCGAAGG 37971601 TACCTGGCTT Statistics Matches: 194, Mismatches: 22, Indels: 5 0.88 0.10 0.02 Matches are distributed among these distances: 39 16 0.08 40 178 0.92 ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT Found at i:37973414 original size:17 final size:16 Alignment explanation
Indices: 37973389--37973431 Score: 50 Period size: 17 Copynumber: 2.6 Consensus size: 16 37973379 AAATCCTAAA * * 37973389 TTTTCCTTTTCCTTTT 1 TTTTTCTTTCCCTTTT 37973405 CTTTTTCTTTCCCTTTT 1 -TTTTTCTTTCCCTTTT * 37973422 TCTTTCTTTC 1 TTTTTCTTTC 37973432 TTTCCCTACT Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 16 9 0.39 17 14 0.61 ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72 Consensus pattern (16 bp): TTTTTCTTTCCCTTTT Found at i:37977301 original size:42 final size:43 Alignment explanation
Indices: 37977246--37977348 Score: 131 Period size: 42 Copynumber: 2.4 Consensus size: 43 37977236 GATTTATGTA * ** * 37977246 TAAGACCATGTCTGGGACATTGGCATC-ATATCTGA-TTTCATG 1 TAAGACCCTGTCTGGGACAGAGGCATCAATAT-TGAGTTACATG 37977288 TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAGTTACATG 1 TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAGTTACATG 37977331 TAAGACCAC-GTCTGGGAC 1 TAAGACC-CTGTCTGGGAC 37977349 GTCGGCATTG Statistics Matches: 54, Mismatches: 4, Indels: 5 0.86 0.06 0.08 Matches are distributed among these distances: 42 27 0.50 43 26 0.48 44 1 0.02 ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27 Consensus pattern (43 bp): TAAGACCCTGTCTGGGACAGAGGCATCAATATTGAGTTACATG Found at i:37977356 original size:43 final size:42 Alignment explanation
Indices: 37977246--37977356 Score: 120 Period size: 43 Copynumber: 2.6 Consensus size: 42 37977236 GATTTATGTA * * * * 37977246 TAAGACCATGTCTGGGACATTGGCATCATATCTGATTTCATG 1 TAAGACCACGTCTGGGACGTAGGCATCATATCTGATTACATG 37977288 TAAGACC-CTGTCTGGGACAG-AGGCATCAATAT-TGAGTTACATG 1 TAAGACCAC-GTCTGGGAC-GTAGGCATC-ATATCTGA-TTACATG * 37977331 TAAGACCACGTCTGGGACGTCGGCAT 1 TAAGACCACGTCTGGGACGTAGGCAT 37977357 TGTAGTTGTT Statistics Matches: 58, Mismatches: 5, Indels: 11 0.78 0.07 0.15 Matches are distributed among these distances: 42 26 0.45 43 31 0.53 44 1 0.02 ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27 Consensus pattern (42 bp): TAAGACCACGTCTGGGACGTAGGCATCATATCTGATTACATG Found at i:37981659 original size:27 final size:27 Alignment explanation
Indices: 37981628--37981692 Score: 103 Period size: 27 Copynumber: 2.4 Consensus size: 27 37981618 AATCACTAAA * * 37981628 CACTTTGCTATGTTTGGCACACTATAT 1 CACTTTGCCATGATTGGCACACTATAT * 37981655 CACTTTGCCATGATTGGCACACTTTAT 1 CACTTTGCCATGATTGGCACACTATAT 37981682 CACTTTGCCAT 1 CACTTTGCCAT 37981693 AGTTCAACTA Statistics Matches: 35, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 27 35 1.00 ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38 Consensus pattern (27 bp): CACTTTGCCATGATTGGCACACTATAT Found at i:37981792 original size:31 final size:31 Alignment explanation
Indices: 37981756--37981896 Score: 183 Period size: 31 Copynumber: 4.5 Consensus size: 31 37981746 AGTGTAGCTA * * 37981756 AAGCTACCACTATTCACTGATCAGGTAGCTG 1 AAGCTACCACTTTTCACTGATCAGGTAGCCG * * * * 37981787 GAGCTATCACTTTTCACTAATTAGGTAGCCG 1 AAGCTACCACTTTTCACTGATCAGGTAGCCG * * * 37981818 AAGCTACTACTTTTCACTCATTAGGTAGCCG 1 AAGCTACCACTTTTCACTGATCAGGTAGCCG * * 37981849 AAGCTATCACTTTTCACTGATCAGGTAGCTG 1 AAGCTACCACTTTTCACTGATCAGGTAGCCG 37981880 AAGCTACCACTTTTCAC 1 AAGCTACCACTTTTCAC 37981897 ATTGAACACA Statistics Matches: 94, Mismatches: 16, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 31 94 1.00 ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30 Consensus pattern (31 bp): AAGCTACCACTTTTCACTGATCAGGTAGCCG Found at i:37981940 original size:32 final size:32 Alignment explanation
Indices: 37981889--37982001 Score: 131 Period size: 33 Copynumber: 3.5 Consensus size: 32 37981879 GAAGCTACCA * * 37981889 CTTTTCACA-TTGAACACACAAGGCGTACATTTC 1 CTTTTCA-AGTTGTACACACAA-GTGTACATTTC 37981922 CTTTTCAAG-TGTACACACAAAGTGTACATTTC 1 CTTTTCAAGTTGTACACAC-AAGTGTACATTTC * * 37981954 CTTTTTAAGTTGTACACACACAGTGTACATTTT 1 CTTTTCAAGTTGTACACACA-AGTGTACATTTC * 37981987 CTTTTCTAGTTGTAC 1 CTTTTCAAGTTGTAC 37982002 CTTTTAGGTA Statistics Matches: 70, Mismatches: 6, Indels: 8 0.83 0.07 0.10 Matches are distributed among these distances: 32 28 0.40 33 42 0.60 ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38 Consensus pattern (32 bp): CTTTTCAAGTTGTACACACAAGTGTACATTTC Found at i:37981973 original size:33 final size:33 Alignment explanation
Indices: 37981902--37982001 Score: 132 Period size: 33 Copynumber: 3.1 Consensus size: 33 37981892 TTCACATTGA * * * 37981902 ACACACAAGGCGTACATTTCCTTTTCAAG-TGT 1 ACACACAAAGTGTACATTTCCTTTTTAAGTTGT 37981934 ACACACAAAGTGTACATTTCCTTTTTAAGTTGT 1 ACACACAAAGTGTACATTTCCTTTTTAAGTTGT * * 37981967 ACACACACAGTGTACATTTTCTTTTCT-AGTTGT 1 ACACACAAAGTGTACATTTCCTTTT-TAAGTTGT 37982000 AC 1 AC 37982002 CTTTTAGGTA Statistics Matches: 61, Mismatches: 5, Indels: 3 0.88 0.07 0.04 Matches are distributed among these distances: 32 26 0.43 33 34 0.56 34 1 0.02 ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37 Consensus pattern (33 bp): ACACACAAAGTGTACATTTCCTTTTTAAGTTGT Found at i:37986047 original size:56 final size:56 Alignment explanation
Indices: 37985987--37986092 Score: 185 Period size: 56 Copynumber: 1.9 Consensus size: 56 37985977 CTTCGAATAT * 37985987 GTATGACACTTACTGTGCGAGATATCGAGTGTGGCACTTAGTGTGCGAGATATCGA 1 GTATGACACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGCGAGATATCGA * * 37986043 GTATGGCACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGTGAGA 1 GTATGACACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGCGAGA 37986093 CAATGAGTAT Statistics Matches: 47, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 56 47 1.00 ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29 Consensus pattern (56 bp): GTATGACACTTACTGTGCGAGATATCGAGTATGGCACTTAGTGTGCGAGATATCGA Found at i:37986102 original size:28 final size:28 Alignment explanation
Indices: 37985987--37986092 Score: 167 Period size: 28 Copynumber: 3.8 Consensus size: 28 37985977 CTTCGAATAT * 37985987 GTATGACACTTACTGTGCGAGATATCGA 1 GTATGGCACTTACTGTGCGAGATATCGA * * 37986015 GTGTGGCACTTAGTGTGCGAGATATCGA 1 GTATGGCACTTACTGTGCGAGATATCGA 37986043 GTATGGCACTTACTGTGCGAGATATCGA 1 GTATGGCACTTACTGTGCGAGATATCGA * * 37986071 GTATGGCACTTAGTGTGTGAGA 1 GTATGGCACTTACTGTGCGAGA 37986093 CAATGAGTAT Statistics Matches: 71, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 28 71 1.00 ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29 Consensus pattern (28 bp): GTATGGCACTTACTGTGCGAGATATCGA Found at i:37988591 original size:46 final size:46 Alignment explanation
Indices: 37988541--37988713 Score: 219 Period size: 46 Copynumber: 3.7 Consensus size: 46 37988531 TGGTTGAGCA 37988541 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * * 37988587 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G * 37988632 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * 37988680 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 37988714 GGGGCGGGTT Statistics Matches: 109, Mismatches: 9, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 5 0.05 45 3 0.03 46 61 0.56 47 29 0.27 48 3 0.03 50 4 0.04 51 2 0.02 ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG Found at i:37988697 original size:93 final size:93 Alignment explanation
Indices: 37988538--37988708 Score: 315 Period size: 93 Copynumber: 1.8 Consensus size: 93 37988528 GGATGGTTGA * * 37988538 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 37988603 TGAGTCCGAGTTCGTGAGATGTAACTAG 66 TGAGTCCGAGTTCGTGAGATGTAACTAG * 37988631 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 37988696 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 37988709 ACTTAGGGGC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAGATGTAACTAG Found at i:38001784 original size:11 final size:11 Alignment explanation
Indices: 38001768--38001794 Score: 54 Period size: 11 Copynumber: 2.5 Consensus size: 11 38001758 TGCCTTATAA 38001768 GGCATTATATG 1 GGCATTATATG 38001779 GGCATTATATG 1 GGCATTATATG 38001790 GGCAT 1 GGCAT 38001795 AAGTGCCAAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33 Consensus pattern (11 bp): GGCATTATATG Found at i:38003482 original size:27 final size:27 Alignment explanation
Indices: 38003444--38003496 Score: 88 Period size: 27 Copynumber: 2.0 Consensus size: 27 38003434 AGGTAAGCTA * * 38003444 ATATACAAATAATGTGATGTTATGTTC 1 ATATAAAAATAATATGATGTTATGTTC 38003471 ATATAAAAATAATATGATGTTATGTT 1 ATATAAAAATAATATGATGTTATGTT 38003497 ATTTTTTTGA Statistics Matches: 24, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 27 24 1.00 ACGTcount: A:0.42, C:0.04, G:0.13, T:0.42 Consensus pattern (27 bp): ATATAAAAATAATATGATGTTATGTTC Found at i:38026994 original size:45 final size:45 Alignment explanation
Indices: 38026927--38027173 Score: 306 Period size: 45 Copynumber: 5.6 Consensus size: 45 38026917 CAGGCTTCGG 38026927 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA 1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA * * * 38026972 GCCTAGCAGGCTATGATACCGGTGAAATGCTATTCAGGCCTTTGA 1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA * * * 38027017 GCCTAGCAGGCTATGATGCCAGTGAGATATTATTCGGGCCTTTGA 1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA * * * 38027062 GCCTAGCAGGCTATAATGCCGGTGAGATACTATTTGGG-CTTTCGA 1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTT-GA * * * 38027107 GCCTAGCAGGCTATAATGCCGGTGACATGA-TA-TCGGGCC-TCGA 1 GCCTAGCAGGCTATGATGCCGGTGAAAT-ACTATTCGGGCCTTTGA * * * 38027150 GCCTAGTAGGCGA-AATGCCGGTGA 1 GCCTAGCAGGCTATGATGCCGGTGA 38027174 TTAGAGAAAA Statistics Matches: 181, Mismatches: 18, Indels: 9 0.87 0.09 0.04 Matches are distributed among these distances: 42 11 0.06 43 13 0.07 44 9 0.05 45 147 0.81 46 1 0.01 ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26 Consensus pattern (45 bp): GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA Found at i:38033821 original size:38 final size:38 Alignment explanation
Indices: 38033776--38033916 Score: 219 Period size: 38 Copynumber: 3.7 Consensus size: 38 38033766 AGATTAAAAA * 38033776 CCCGCAGGCTTCGTACTGGTATTATATCTGGGTTAAAT 1 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT * * * 38033814 CACGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT 1 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT * 38033852 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT 1 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT * * 38033890 CCCGCAGGCCTAGTACTGGTATTATAT 1 CCCGCAGGCTTCGTACTGGTATTATAT 38033917 TCAGGCCTTG Statistics Matches: 94, Mismatches: 9, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 38 94 1.00 ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31 Consensus pattern (38 bp): CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT Found at i:38035319 original size:48 final size:48 Alignment explanation
Indices: 38035225--38035328 Score: 122 Period size: 48 Copynumber: 2.2 Consensus size: 48 38035215 TGTGCTAAGC * * * 38035225 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT 1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT ** 38035273 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT 1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT * 38035321 ATAAGACC 1 GTAAGACC 38035329 ACAGTCGGAC Statistics Matches: 48, Mismatches: 6, Indels: 4 0.83 0.10 0.07 Matches are distributed among these distances: 47 8 0.17 48 40 0.83 ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17 Consensus pattern (48 bp): GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT Found at i:38038767 original size:108 final size:108 Alignment explanation
Indices: 38038578--38038794 Score: 434 Period size: 108 Copynumber: 2.0 Consensus size: 108 38038568 CTTATGCATG 38038578 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT 1 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT 38038643 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA 66 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA 38038686 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT 1 TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT 38038751 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA 66 ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA 38038794 T 1 T 38038795 GGGCTATGTG Statistics Matches: 109, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 108 109 1.00 ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30 Consensus pattern (108 bp): TTAAATCGATTGAAATTGAATCATGAATGTGAATTGAGAAGCATAGGTGAAAATGCCTATGTCAT ATATGTGAGTAAGGATAAAATCATCGTAAATTATCGATAAGGA Found at i:38040602 original size:46 final size:46 Alignment explanation
Indices: 38040552--38040724 Score: 201 Period size: 46 Copynumber: 3.7 Consensus size: 46 38040542 TGGTTGAGCA 38040552 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * * * 38040598 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G ** 38040643 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA 1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * 38040691 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 38040725 GGGGCGGGTT Statistics Matches: 106, Mismatches: 12, Indels: 18 0.78 0.09 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 45 3 0.03 46 61 0.58 47 29 0.27 48 2 0.02 50 3 0.03 51 2 0.02 ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG Found at i:38040708 original size:93 final size:93 Alignment explanation
Indices: 38040549--38040719 Score: 306 Period size: 93 Copynumber: 1.8 Consensus size: 93 38040539 GGATGGTTGA *** 38040549 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT 38040614 TGAGTCCGAGTTCGTGAAATGTAACTAG 66 TGAGTCCGAGTTCGTGAAATGTAACTAG * 38040642 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT 38040707 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 38040720 ACTTAGGGGC Statistics Matches: 74, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 93 74 1.00 ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAAATGTAACTAG Found at i:38048169 original size:46 final size:45 Alignment explanation
Indices: 38048119--38048290 Score: 215 Period size: 46 Copynumber: 3.8 Consensus size: 45 38048109 TGGTTGAGCA 38048119 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G * * * * 38048165 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA- 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG 38048211 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G * * 38048257 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 38048291 GGGGCGGGTT Statistics Matches: 108, Mismatches: 10, Indels: 16 0.81 0.07 0.12 Matches are distributed among these distances: 43 1 0.01 44 3 0.03 45 2 0.02 46 96 0.89 47 2 0.02 48 3 0.03 49 1 0.01 ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29 Consensus pattern (45 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG Found at i:38048273 original size:92 final size:92 Alignment explanation
Indices: 38048116--38048285 Score: 313 Period size: 92 Copynumber: 1.8 Consensus size: 92 38048106 GGATGGTTGA * * 38048116 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 38048181 TGAGTCCGAGTTCGTGAATGTAACTAG 66 TGAGTCCGAGTTCGTGAATGTAACTAG * 38048208 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 38048273 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 38048286 ACTTAGGGGC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 92 75 1.00 ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28 Consensus pattern (92 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAATGTAACTAG Found at i:38049910 original size:38 final size:38 Alignment explanation
Indices: 38049849--38050121 Score: 384 Period size: 38 Copynumber: 7.1 Consensus size: 38 38049839 ATTTGATGTG * 38049849 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA 1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA * 38049889 TATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA 38049927 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA * * * 38049965 TATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTAGTAATA 1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA * 38050005 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA * * * 38050043 TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTATTA 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA * * * * * 38050081 TATCCAGGTTAAATCCCGCAGGCCTAGTACTGGTATTA 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA 38050119 TAT 1 TAT 38050122 TCAGGCCTTT Statistics Matches: 211, Mismatches: 20, Indels: 6 0.89 0.08 0.03 Matches are distributed among these distances: 38 160 0.76 39 15 0.07 40 36 0.17 ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30 Consensus pattern (38 bp): TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA Found at i:38050053 original size:116 final size:116 Alignment explanation
Indices: 38049849--38050103 Score: 408 Period size: 116 Copynumber: 2.2 Consensus size: 116 38049839 ATTTGATGTG * * 38049849 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTT 1 TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATTCGGGTTAAATCCCGCAGGCTT * 38049914 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA 66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA * 38049965 TATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTAGTAATATA-TCTGGGTTAAATCCCGCAGGCT 1 TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATTC-GGGTTAAATCCCGCAGGCT * * 38050029 TCGTGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTATTA 65 TCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA * * 38050081 TATCCAGG-TTAAA-TCCCGCAGGC 1 TATCCGGGTTTAAAGACCCGCAGGC 38050104 CTAGTACTGG Statistics Matches: 129, Mismatches: 9, Indels: 4 0.91 0.06 0.03 Matches are distributed among these distances: 114 8 0.06 115 7 0.05 116 114 0.88 ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29 Consensus pattern (116 bp): TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATTCGGGTTAAATCCCGCAGGCTT CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA Found at i:38055984 original size:39 final size:39 Alignment explanation
Indices: 38055888--38055965 Score: 156 Period size: 39 Copynumber: 2.0 Consensus size: 39 38055878 AAGTTAACAA 38055888 CAATTAATAATAAAAAATATACATATTAAATTATTAATG 1 CAATTAATAATAAAAAATATACATATTAAATTATTAATG 38055927 CAATTAATAATAAAAAATATACATATTAAATTATTAATG 1 CAATTAATAATAAAAAATATACATATTAAATTATTAATG 38055966 TTATTAATTT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 39 39 1.00 ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36 Consensus pattern (39 bp): CAATTAATAATAAAAAATATACATATTAAATTATTAATG Found at i:38059487 original size:37 final size:37 Alignment explanation
Indices: 38059437--38059510 Score: 148 Period size: 37 Copynumber: 2.0 Consensus size: 37 38059427 ATTGGTCACC 38059437 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA 1 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA 38059474 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA 1 CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA 38059511 TTTTACATAG Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 37 37 1.00 ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27 Consensus pattern (37 bp): CTCTAACATCCATGCACACTTGTAAGCTTCAAAGGTA Found at i:38063554 original size:46 final size:48 Alignment explanation
Indices: 38063444--38063565 Score: 149 Period size: 46 Copynumber: 2.5 Consensus size: 48 38063434 TGTCTTCGAC ** * * * 38063444 ATGGACTTACATGAATTATTCATGTCTCCAATGCCATATATAAATCTAAT 1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATAT-AATCTAAT * 38063494 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATAT-ATCTAAT 1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATAATCTAAT * 38063540 ATGGACTTACATGGCTCATTTCTGTC 1 ATGGACTTACATGGCTCATTCCTGTC 38063566 CTGTCCTGTC Statistics Matches: 64, Mismatches: 8, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 46 31 0.48 48 4 0.06 50 29 0.45 ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35 Consensus pattern (48 bp): ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATAATCTAAT Found at i:38069705 original size:46 final size:47 Alignment explanation
Indices: 38069599--38069720 Score: 138 Period size: 46 Copynumber: 2.6 Consensus size: 47 38069589 TGTCTTTGAC ** * * * 38069599 ATGGACTTACATGAATTATTCCTGTCTCTAATGCCATATATATATCTAAT 1 ATGGACTTACATGGCTCATTCCTGTCTCTAAAGCC--A-ATATACCTAAT * * 38069649 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCC-ATATACCTGAT 1 ATGGACTTACATGGCTCATTCCTGTCTCTAAAGCCAATATACCTAAT * 38069695 ATGGACTTACATGGCTCATTTCTGTC 1 ATGGACTTACATGGCTCATTCCTGTC 38069721 CTGTCCTGTC Statistics Matches: 63, Mismatches: 9, Indels: 4 0.83 0.12 0.05 Matches are distributed among these distances: 46 33 0.52 50 30 0.48 ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37 Consensus pattern (47 bp): ATGGACTTACATGGCTCATTCCTGTCTCTAAAGCCAATATACCTAAT Found at i:38072467 original size:28 final size:28 Alignment explanation
Indices: 38072399--38072477 Score: 95 Period size: 28 Copynumber: 2.8 Consensus size: 28 38072389 GAATCATTCG * * 38072399 ATATTTTGCACACTAAGTGTCATTCTCA 1 ATATTTCGCACACTAAGTGCCATTCTCA ** 38072427 ATACCTCGCACACTAAGTGCCATTCTCA 1 ATATTTCGCACACTAAGTGCCATTCTCA * * * 38072455 ATATTTCGTACACTGAGTACCAT 1 ATATTTCGCACACTAAGTGCCAT 38072478 ATTTGATTGC Statistics Matches: 42, Mismatches: 9, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 28 42 1.00 ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33 Consensus pattern (28 bp): ATATTTCGCACACTAAGTGCCATTCTCA Found at i:38077303 original size:10 final size:10 Alignment explanation
Indices: 38077288--38077315 Score: 56 Period size: 10 Copynumber: 2.8 Consensus size: 10 38077278 TAAATACATT 38077288 TAATTAAAGA 1 TAATTAAAGA 38077298 TAATTAAAGA 1 TAATTAAAGA 38077308 TAATTAAA 1 TAATTAAA 38077316 ATTAAATCCT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 18 1.00 ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32 Consensus pattern (10 bp): TAATTAAAGA Found at i:38079338 original size:5 final size:6 Alignment explanation
Indices: 38079271--38079345 Score: 59 Period size: 6 Copynumber: 12.7 Consensus size: 6 38079261 ATATTTAACT * * ** 38079271 AAAAT- AAAATA AAAAT- AAAATA ATAAATA ATAAGT- AAAA-A GAAAGG 1 AAAATA AAAATA AAAATA AAAATA A-AAATA A-AAATA AAAATA AAAATA 38079317 AAAATA ATAAATA AAAATA AAAATA AAAA 1 AAAATA A-AAATA AAAATA AAAATA AAAA 38079346 GAAAGATTGG Statistics Matches: 57, Mismatches: 7, Indels: 11 0.76 0.09 0.15 Matches are distributed among these distances: 5 15 0.26 6 26 0.46 7 16 0.28 ACGTcount: A:0.77, C:0.00, G:0.05, T:0.17 Consensus pattern (6 bp): AAAATA Found at i:38085544 original size:17 final size:17 Alignment explanation
Indices: 38085488--38085553 Score: 53 Period size: 17 Copynumber: 3.7 Consensus size: 17 38085478 TAATGGTGGA 38085488 AAAGAAAATAAAATTATGG 1 AAAGAAAA-AAAA-TATGG ** ** 38085507 AAA-AAAAAATTTTATTA 1 AAAGAAAAAA-AATATGG 38085524 AAAGAAAAAAAATATGG 1 AAAGAAAAAAAATATGG 38085541 AAAGAACAAAAAA 1 AAAGAA-AAAAAA 38085554 CTTTTAGGGG Statistics Matches: 36, Mismatches: 8, Indels: 7 0.71 0.16 0.14 Matches are distributed among these distances: 17 17 0.47 18 16 0.44 19 3 0.08 ACGTcount: A:0.70, C:0.02, G:0.11, T:0.18 Consensus pattern (17 bp): AAAGAAAAAAAATATGG Found at i:38085683 original size:10 final size:10 Alignment explanation
Indices: 38085668--38085699 Score: 57 Period size: 10 Copynumber: 3.3 Consensus size: 10 38085658 TAAATACATT 38085668 TAATTAAAGA 1 TAATTAAAGA 38085678 TAATTAAAGA 1 TAATTAAAGA 38085688 TAATTAAA-A 1 TAATTAAAGA 38085697 TAA 1 TAA 38085700 AATCCTAAAA Statistics Matches: 22, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 9 4 0.18 10 18 0.82 ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31 Consensus pattern (10 bp): TAATTAAAGA Found at i:38085725 original size:27 final size:26 Alignment explanation
Indices: 38085695--38085756 Score: 70 Period size: 27 Copynumber: 2.3 Consensus size: 26 38085685 AGATAATTAA 38085695 AATAAAATCCTAAAATTAAATAATCCT 1 AATAAAATCCTAAAATT-AATAATCCT * * * * 38085722 AATAATTATCTTAATATTAATTATCCT 1 AATAA-AATCCTAAAATTAATAATCCT 38085749 AATAAAAT 1 AATAAAAT 38085757 AGAGTCTTCC Statistics Matches: 29, Mismatches: 5, Indels: 3 0.78 0.14 0.08 Matches are distributed among these distances: 26 2 0.07 27 18 0.62 28 9 0.31 ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37 Consensus pattern (26 bp): AATAAAATCCTAAAATTAATAATCCT Found at i:38088389 original size:22 final size:22 Alignment explanation
Indices: 38088362--38088403 Score: 59 Period size: 22 Copynumber: 1.9 Consensus size: 22 38088352 TTATTAACCC 38088362 AAATTAAATTAGA-TATAAATTA 1 AAATT-AATTAGATTATAAATTA * 38088384 AAATTAATTATATTATAAAT 1 AAATTAATTAGATTATAAAT 38088404 AAATACATAT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 21 6 0.33 22 12 0.67 ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40 Consensus pattern (22 bp): AAATTAATTAGATTATAAATTA Found at i:38105442 original size:50 final size:50 Alignment explanation
Indices: 38105362--38105750 Score: 396 Period size: 50 Copynumber: 7.8 Consensus size: 50 38105352 TAGGGTTATT * * 38105362 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATA 1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA * * * 38105412 CGAGAGCTAGTGCAAGACCATGTCTAGGACATGGCATCGGCCTCGATAAA 1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA * * * * 38105462 TGATAG-TCAATGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATAGA 1 CGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATATA * * * * * 38105512 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-CAC-AAATGGA 1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAT--A * * 38105562 CGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATA 1 CGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA * * ** * * 38105612 CGAGAGCTAGTGTAAGACCATGTCTAGGATATGGTGTCGGCTTCGATACA 1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA * * * * * * * * 38105662 TGATAGTTAGTGTAAGACCATGTTTGGGACATAGCATCGTCTTTG--ATA 1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA * * 38105710 CGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC 1 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC 38105751 TTCCTACCTA Statistics Matches: 281, Mismatches: 48, Indels: 22 0.80 0.14 0.06 Matches are distributed among these distances: 48 40 0.14 49 2 0.01 50 232 0.83 51 4 0.01 52 3 0.01 ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23 Consensus pattern (50 bp): CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATA Found at i:38108749 original size:16 final size:16 Alignment explanation
Indices: 38108728--38108761 Score: 68 Period size: 16 Copynumber: 2.1 Consensus size: 16 38108718 ACCATCTCTT 38108728 TTAGGAAAAATCATGG 1 TTAGGAAAAATCATGG 38108744 TTAGGAAAAATCATGG 1 TTAGGAAAAATCATGG 38108760 TT 1 TT 38108762 TATCTCTGTT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29 Consensus pattern (16 bp): TTAGGAAAAATCATGG Found at i:38113495 original size:45 final size:46 Alignment explanation
Indices: 38113435--38113558 Score: 162 Period size: 45 Copynumber: 2.7 Consensus size: 46 38113425 CAAGTTGATG * * 38113435 CCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGAT 1 CCATGTCCCAAACATGTCTTACACTGGCTCT-CGTCTCAAGGCCGAT * * * 38113481 -CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAATGCCGAT 1 CCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAAGGCCGAT 38113526 GCCATGTCCCAAACATGGTCTTACACTGGCTCT 1 -CCATGTCCCAAACAT-GTCTTACACTGGCTCT 38113559 TATAATGTGG Statistics Matches: 68, Mismatches: 6, Indels: 6 0.85 0.08 0.08 Matches are distributed among these distances: 45 38 0.56 46 1 0.01 47 14 0.21 48 15 0.22 ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28 Consensus pattern (46 bp): CCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAAGGCCGAT Found at i:38113579 original size:47 final size:46 Alignment explanation
Indices: 38113431--38113603 Score: 144 Period size: 45 Copynumber: 3.7 Consensus size: 46 38113421 ATCTCAAGTT * * * 38113431 GATGCCATGTCCCAGACATGTCTTACACTGGCT-TACGTC-TCGA-GGCC 1 GATG-CATGTCCCAAACATGTCTTACACTAGCTCT-C-TCAT-AATGGCC * 38113478 GAT-CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAAT-GCC 1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCATAATGGCC * 38113523 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-T-ATAATGTGGCC 1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCTCATAA--TGGCC * * * 38113571 GATGCATGTCCTAGACATGTTTTACACTAGCTC 1 GATGCATGTCCCAAACATGTCTTACACTAGCTC 38113604 ACACACGAAT Statistics Matches: 108, Mismatches: 9, Indels: 19 0.79 0.07 0.14 Matches are distributed among these distances: 45 40 0.37 46 16 0.15 47 30 0.28 48 22 0.20 ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29 Consensus pattern (46 bp): GATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAATGGCC Found at i:38118985 original size:27 final size:27 Alignment explanation
Indices: 38118955--38119125 Score: 238 Period size: 27 Copynumber: 6.3 Consensus size: 27 38118945 TATTGAAATG * 38118955 CCCTCGATTTATAGAATTACCGTTTCA 1 CCCTCGATTTATAGAATTACCGTTTTA * * 38118982 CCCTCGATTTACAAAATTACCGTTTTA 1 CCCTCGATTTATAGAATTACCGTTTTA * 38119009 CCCTCGATTTATAGAATTACCATTTTA 1 CCCTCGATTTATAGAATTACCGTTTTA * * 38119036 CCCTCGATTTACAGAATTATCGTTTTA 1 CCCTCGATTTATAGAATTACCGTTTTA * * 38119063 CCCTCGATTTATAAAATTACCATTTTA 1 CCCTCGATTTATAGAATTACCGTTTTA 38119090 CCCTC-AGTTTACTA-AATTACCGTTTTA 1 CCCTCGA-TTTA-TAGAATTACCGTTTTA 38119117 CCCTCGATT 1 CCCTCGATT 38119126 GTGAAATTAT Statistics Matches: 127, Mismatches: 14, Indels: 6 0.86 0.10 0.04 Matches are distributed among these distances: 26 1 0.01 27 123 0.97 28 3 0.02 ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39 Consensus pattern (27 bp): CCCTCGATTTATAGAATTACCGTTTTA Found at i:38119017 original size:54 final size:54 Alignment explanation
Indices: 38118955--38119125 Score: 272 Period size: 54 Copynumber: 3.2 Consensus size: 54 38118945 TATTGAAATG * * 38118955 CCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCGTTTTA 1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA * * 38119009 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTA 1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA * * 38119063 CCCTCGATTTATAAAATTACCATTTTACCCTC-AGTTTACTAAATTACCGTTTTA 1 CCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCGTTTTA 38119117 CCCTCGATT 1 CCCTCGATT 38119126 GTGAAATTAT Statistics Matches: 108, Mismatches: 8, Indels: 2 0.92 0.07 0.02 Matches are distributed among these distances: 53 1 0.01 54 107 0.99 ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39 Consensus pattern (54 bp): CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA Found at i:38119187 original size:27 final size:27 Alignment explanation
Indices: 38119157--38119280 Score: 126 Period size: 27 Copynumber: 4.6 Consensus size: 27 38119147 TGTAGGATAG 38119157 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAGTTTGTAA * * * * * 38119184 AATTATCGAAATACCACTGGTTTGTGA 1 AATTACCAAAATACCCCTAGTTTGTAA * * 38119211 AATTACCGAAATA-CCCTCAATTTGTAA 1 AATTACCAAAATACCCCT-AGTTTGTAA ** 38119238 AATTACCAAAATACCCCT-GATTTACAA 1 AATTACCAAAATACCCCTAG-TTTGTAA * 38119265 AATTACAAAAATACCC 1 AATTACCAAAATACCC 38119281 TTGACTTTCT Statistics Matches: 79, Mismatches: 15, Indels: 6 0.79 0.15 0.06 Matches are distributed among these distances: 26 3 0.04 27 72 0.91 28 4 0.05 ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28 Consensus pattern (27 bp): AATTACCAAAATACCCCTAGTTTGTAA Found at i:38119198 original size:54 final size:53 Alignment explanation
Indices: 38119115--38119256 Score: 137 Period size: 54 Copynumber: 2.7 Consensus size: 53 38119105 ATTACCGTTT * * * 38119115 TACCCTCGA-TTGTGAAATTATTGAAATACCCCTGTAGGAT-AGAATTACCAAAA 1 TACCCTCAATTTGTAAAATTATCGAAATACCCCTGTAGG-TGA-AATTACCAAAA * * ** * 38119168 TACCC-CTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGAAATTACCGAAA 1 TACCCTC-AATTTGTAAAATTATCGAAATACCCCT-GTAGGTGAAATTACCAAAA * * 38119222 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG 1 TACCCTCAATTTGTAAAATTATCGAAATACCCCTG 38119257 ATTTACAAAA Statistics Matches: 72, Mismatches: 12, Indels: 10 0.77 0.13 0.11 Matches are distributed among these distances: 52 1 0.01 53 6 0.08 54 60 0.83 55 5 0.07 ACGTcount: A:0.37, C:0.21, G:0.13, T:0.30 Consensus pattern (53 bp): TACCCTCAATTTGTAAAATTATCGAAATACCCCTGTAGGTGAAATTACCAAAA Found at i:38119268 original size:54 final size:53 Alignment explanation
Indices: 38119157--38119337 Score: 157 Period size: 54 Copynumber: 3.3 Consensus size: 53 38119147 TGTAGGATAG * * *** 38119157 AATTACCAAAATACCC-CTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGA 1 AATTACCAAAATACCCTC-AATTTGTAAAATTA-CAAAATACCACTGGTTTACAA * * * 38119211 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA 1 AATTACCAAAATACCCTCAATTTGTAAAATTA-CAAAATACCACTGGTTTACAA * * * * * * 38119265 AATTACAAAAATACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAA 1 AATTACCAAAATACCC-TCAATTTGT-AAAATTACA-AAATACCACTGGTTTACAA ** 38119321 AATTACTGAAATACCCT 1 AATTACCAAAATACCCT 38119338 TGGTTTGTAG Statistics Matches: 103, Mismatches: 20, Indels: 7 0.79 0.15 0.05 Matches are distributed among these distances: 54 57 0.55 55 9 0.09 56 37 0.36 ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30 Consensus pattern (53 bp): AATTACCAAAATACCCTCAATTTGTAAAATTACAAAATACCACTGGTTTACAA Found at i:38119331 original size:27 final size:27 Alignment explanation
Indices: 38119292--38119343 Score: 79 Period size: 27 Copynumber: 1.9 Consensus size: 27 38119282 TGACTTTCTA 38119292 AAAATTATAGAAATACCATTGGTTTAC 1 AAAATTATAGAAATACCATTGGTTTAC * 38119319 AAAATTACT-GAAATACCCTTGGTTT 1 AAAATTA-TAGAAATACCATTGGTTT 38119344 GTAGATTTAC Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 27 22 0.96 28 1 0.04 ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35 Consensus pattern (27 bp): AAAATTATAGAAATACCATTGGTTTAC Found at i:38119345 original size:110 final size:108 Alignment explanation
Indices: 38119157--38119363 Score: 252 Period size: 110 Copynumber: 1.9 Consensus size: 108 38119147 TGTAGGATAG * * * * *** 38119157 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGAAATTACCGAAA 1 AATTACAAAAATACCCCTACTTTCTAAAATTATAGAAATACCACTGGTTTACAAAATTACCGAAA * 38119222 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA 66 TACCCTCAATTTGTAAAATTACCAAAACACCCCTGATTTACAA * * * 38119265 AATTACAAAAATACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAAAATTACTGA 1 AATTACAAAAATACCCCT-ACTTTCT-AAAATTATAGAAATACCACTGGTTTACAAAATTACCGA *** * * 38119330 AATACCCTTGGTTTGTAGATTTACCAAAACACCC 64 AATACCCTCAATTTGTAAAATTACCAAAACACCC 38119364 TTGTAGGATG Statistics Matches: 81, Mismatches: 16, Indels: 2 0.82 0.16 0.02 Matches are distributed among these distances: 108 16 0.20 109 5 0.06 110 60 0.74 ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30 Consensus pattern (108 bp): AATTACAAAAATACCCCTACTTTCTAAAATTATAGAAATACCACTGGTTTACAAAATTACCGAAA TACCCTCAATTTGTAAAATTACCAAAACACCCCTGATTTACAA Found at i:38119427 original size:27 final size:27 Alignment explanation
Indices: 38119384--38119457 Score: 71 Period size: 27 Copynumber: 2.7 Consensus size: 27 38119374 AAATGACTAA * 38119384 AATACCCCTAATA-GGTAAAAAGACCGT 1 AATACCCCT-GTAGGGTAAAAAGACCGT ** * 38119411 AA-AGCCCCTGTAGGGTAAAGTGATCGT 1 AATA-CCCCTGTAGGGTAAAAAGACCGT * 38119438 AATACCCCTGTATGGTAAAA 1 AATACCCCTGTAGGGTAAAA 38119458 TAACGAATAT Statistics Matches: 38, Mismatches: 6, Indels: 6 0.76 0.12 0.12 Matches are distributed among these distances: 26 3 0.08 27 34 0.89 28 1 0.03 ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22 Consensus pattern (27 bp): AATACCCCTGTAGGGTAAAAAGACCGT Found at i:38120287 original size:25 final size:25 Alignment explanation
Indices: 38120249--38120318 Score: 95 Period size: 25 Copynumber: 2.8 Consensus size: 25 38120239 AGGAAGTGCT * * 38120249 AAAAGGGCTATGCCCCAGTTTACCG 1 AAAAGGGCTTTGCCCCAGTTTACCA * 38120274 AAAAGGGCTTTGCCCCAGTTTATCA 1 AAAAGGGCTTTGCCCCAGTTTACCA ** 38120299 AAAAGGGCTTTATCCCAGTT 1 AAAAGGGCTTTGCCCCAGTT 38120319 ATTAAAAGAG Statistics Matches: 40, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 25 40 1.00 ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26 Consensus pattern (25 bp): AAAAGGGCTTTGCCCCAGTTTACCA Found at i:38120587 original size:31 final size:31 Alignment explanation
Indices: 38120538--38120651 Score: 187 Period size: 31 Copynumber: 3.7 Consensus size: 31 38120528 CGCTTACAGT * 38120538 AAAGGCTTCGG-CCAGTGATATGATTTATAA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA 38120568 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * 38120599 AAAGGCTTCGGCCCAGTGATATGATTTATGG 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * 38120630 AAAGGCTTCGGCGCAGT-ATATG 1 AAAGGCTTCGGCCCAGTGATATG 38120652 TCAAGACTAA Statistics Matches: 80, Mismatches: 3, Indels: 2 0.94 0.04 0.02 Matches are distributed among these distances: 30 16 0.20 31 64 0.80 ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGATTTATGA Found at i:38122042 original size:16 final size:16 Alignment explanation
Indices: 38122021--38122053 Score: 66 Period size: 16 Copynumber: 2.1 Consensus size: 16 38122011 TGGTGGAAAT 38122021 TGCTTCTACTCTCATG 1 TGCTTCTACTCTCATG 38122037 TGCTTCTACTCTCATG 1 TGCTTCTACTCTCATG 38122053 T 1 T 38122054 TGGATGACCC Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 17 1.00 ACGTcount: A:0.12, C:0.30, G:0.12, T:0.45 Consensus pattern (16 bp): TGCTTCTACTCTCATG Found at i:38127702 original size:32 final size:32 Alignment explanation
Indices: 38127642--38127705 Score: 87 Period size: 32 Copynumber: 2.0 Consensus size: 32 38127632 ATGAATACAA * 38127642 AGGATATCAAACATGTTCTTCTATATCTCAAT 1 AGGATATCAAACATGTTCTTCTAAATCTCAAT 38127674 AGGATATCAAACCAT-TTCTT-TAAAATCTCAAT 1 AGGATATCAAA-CATGTTCTTCT-AAATCTCAAT 38127706 GGTTCATAAA Statistics Matches: 29, Mismatches: 1, Indels: 4 0.85 0.03 0.12 Matches are distributed among these distances: 31 1 0.03 32 25 0.86 33 3 0.10 ACGTcount: A:0.38, C:0.19, G:0.08, T:0.36 Consensus pattern (32 bp): AGGATATCAAACATGTTCTTCTAAATCTCAAT Found at i:38133778 original size:126 final size:129 Alignment explanation
Indices: 38133595--38133826 Score: 323 Period size: 126 Copynumber: 1.8 Consensus size: 129 38133585 AAAAAACGAT * * * 38133595 GAGAAATTAAGATAGGGAACCTGAGTAAGAGAATGGAGATTGAATGAGAGGAGGAGAGAGAGAG- 1 GAGAAATTAAGATAGGGAACATGAGTAAGAGAATCGAGATGGAATGAGAGGAGGAGAGAGAGAGA * * 38133659 A-GAGAGAC-A-AAAACCCTC-CCGCCGCTGTTGTATGGTATGTAGTTATTAGATACCAAAATG 66 AGGAGAGACAACAAAACCCCCTCCGCCGCTGTTATATGGTATGTAGTTATTAGATACCAAAATG * * 38133719 GAGAAATTAAGATAGGGGAAGATGAGTAATTAGAATCGAGATGGAATGAGA-GATGGAGAGAGAG 1 GAGAAATTAAGATA-GGGAACATGAGTAA-GAGAATCGAGATGGAATGAGAGGA-GGAGAGAGAG 38133783 AGAAGGAGAGACAGACAAAACCCCCTCCGCCGCTGTTATATGGT 63 AGAAGGAGAGACA-ACAAAACCCCCTCCGCCGCTGTTATATGGT 38133827 TTTCAGATTC Statistics Matches: 92, Mismatches: 7, Indels: 10 0.84 0.06 0.09 Matches are distributed among these distances: 124 14 0.15 125 14 0.15 126 30 0.33 127 1 0.01 128 7 0.08 130 1 0.01 131 8 0.09 132 17 0.18 ACGTcount: A:0.39, C:0.12, G:0.31, T:0.18 Consensus pattern (129 bp): GAGAAATTAAGATAGGGAACATGAGTAAGAGAATCGAGATGGAATGAGAGGAGGAGAGAGAGAGA AGGAGAGACAACAAAACCCCCTCCGCCGCTGTTATATGGTATGTAGTTATTAGATACCAAAATG Done.