Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 125 of 332
Found at i:40717026 original size:13 final size:13
Alignment explanation
Indices: 40717008--40717042 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
40716998 CCAGGGACAT
40717008 GGGCGTGTGCCCA
1 GGGCGTGTGCCCA
40717021 GGGCGTGTGCCCA
1 GGGCGTGTGCCCA
40717034 GGGCGTGTG
1 GGGCGTGTG
40717043 AAGTCTGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.26, G:0.51, T:0.17
Consensus pattern (13 bp):
GGGCGTGTGCCCA
Found at i:40724205 original size:46 final size:45
Alignment explanation
Indices: 40724138--40724312 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
40724128 TGTAACCCGC
* *
40724138 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
* * * *
40724184 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCAT
* * * *
40724230 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTTC-GACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGC-TTCGCAT
40724277 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
40724313 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
45 6 0.06
46 62 0.60
47 29 0.28
48 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCAT
Found at i:40724304 original size:93 final size:93
Alignment explanation
Indices: 40724145--40724316 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
40724135 CGCCCATAAG
* * *
40724145 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
40724210 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
40724238 CGAACTCGGACTCAACTCAACGAGTTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-CTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
40724302 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
40724317 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
93 72 0.97
94 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:40724332 original size:46 final size:45
Alignment explanation
Indices: 40724146--40724332 Score: 125
Period size: 46 Copynumber: 4.0 Consensus size: 45
40724136 GCCCATAAGC
* ** * *
40724146 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-C-TA-GT
* *
40724192 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AGT
* * * * *
40724239 GAACTCGGACTCAACTCAACGAGTTTCGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAG-TTCG-GATGCTCAACCATCTAGT
40724285 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
40724331 GA
1 GA
40724333 CATGTCACTT
Statistics
Matches: 111, Mismatches: 16, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
44 9 0.08
45 6 0.05
46 56 0.50
47 26 0.23
48 5 0.05
49 5 0.05
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:40731699 original size:145 final size:144
Alignment explanation
Indices: 40731446--40731730 Score: 428
Period size: 145 Copynumber: 2.0 Consensus size: 144
40731436 TTCTTTTAAA
* *
40731446 AAATCACAACTTTTCTTAAAAATCAAAGCTTTATTTCAAAATAGTTGAAAAATATCAAAACTTTG
1 AAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTG
*
40731511 TTTTAAAATTTTAAACTTTTCCAGTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAAA
66 TTTTAAAATTTTAAAATTTTCCAGTAAAATGACTAAAAAACATATTTTTATTTTAAAAATC-AAA
40731576 CTATCTCTTTTTTTT
130 CTATCTCTTTTTTTT
* * * *
40731591 AAATCACTATTTTTCTTAAAAATCAAATATTTATTTCGAAATAGTTGAAAAAGATCAAAACTTTG
1 AAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTG
* ** * *
40731656 TTTTCAAA-TTTAAAATTTTCCTTTAATATGACTTGAAAAACATATTTTTATTTTAAAAATCAAA
66 TTTTAAAATTTTAAAATTTTCCAGTAAAATGAC-TAAAAAACATATTTTTATTTTAAAAATCAAA
*
40731720 CTTTCTCTTTT
130 CTATCTCTTTT
40731731 AAAAAAAATG
Statistics
Matches: 126, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
144 33 0.26
145 93 0.74
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.42
Consensus pattern (144 bp):
AAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTG
TTTTAAAATTTTAAAATTTTCCAGTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCAAAC
TATCTCTTTTTTTT
Found at i:40732413 original size:19 final size:19
Alignment explanation
Indices: 40732389--40732429 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
40732379 AATCGGGACT
40732389 ATCATAATTTTCACATGTA
1 ATCATAATTTTCACATGTA
*
40732408 ATCATAATTTTCACGTGTA
1 ATCATAATTTTCACATGTA
40732427 ATC
1 ATC
40732430 CCCAAAACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (19 bp):
ATCATAATTTTCACATGTA
Found at i:40733940 original size:27 final size:27
Alignment explanation
Indices: 40733902--40733955 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
40733892 AAACATAAAC
*
40733902 TCATTCTTTCAATTATTTTTTAGTAAT
1 TCATTCTTTCAATCATTTTTTAGTAAT
40733929 TCATTCTTTCAATCATTTTTTAGTAAT
1 TCATTCTTTCAATCATTTTTTAGTAAT
40733956 CCATGTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (27 bp):
TCATTCTTTCAATCATTTTTTAGTAAT
Found at i:40734002 original size:13 final size:13
Alignment explanation
Indices: 40733977--40734009 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
40733967 TGTAAATGTA
40733977 TCATTTCTCATTTC
1 TCATTT-TCATTTC
40733991 TCATTTTCATTTC
1 TCATTTTCATTTC
40734004 T-ATTTT
1 TCATTTT
40734010 GAGAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 8 0.42
14 6 0.32
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTC
Found at i:40734008 original size:6 final size:7
Alignment explanation
Indices: 40733977--40734008 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
40733967 TGTAAATGTA
40733977 TCATTTC
1 TCATTTC
40733984 TCATTTC
1 TCATTTC
40733991 TCATTT-
1 TCATTTC
40733997 TCATTTC
1 TCATTTC
40734004 T-ATTT
1 TCATTT
40734009 TGAGAAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 10 0.42
7 14 0.58
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (7 bp):
TCATTTC
Found at i:40735283 original size:52 final size:52
Alignment explanation
Indices: 40735218--40735318 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
40735208 TCTTCTCCTC
* *
40735218 TACCTGTGGTTTTTTCCTGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
1 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
*
40735270 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATTTTGTGTGTT
1 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTT
40735319 TTTCTTCTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (52 bp):
TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
Found at i:40735968 original size:45 final size:45
Alignment explanation
Indices: 40735919--40736137 Score: 330
Period size: 45 Copynumber: 4.9 Consensus size: 45
40735909 TCGGCCATGG
* * * *
40735919 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* *
40735964 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
40736009 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
*
40736054 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* * * **
40736099 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
40736138 TCCACCTCTT
Statistics
Matches: 160, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 160 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
Found at i:40736072 original size:90 final size:90
Alignment explanation
Indices: 40735919--40736137 Score: 375
Period size: 90 Copynumber: 2.4 Consensus size: 90
40735909 TCGGCCATGG
* *
40735919 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAATGCTTCCTTAAATTCTTCCA
1 TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCA
40735984 TGAATTATGCATGATGTTGGTCAAA
66 TGAATTATGCATGATGTTGGTCAAA
* * *
40736009 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCA
1 TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCA
40736074 TGAATTATGCATGATGTTGGTCAAA
66 TGAATTATGCATGATGTTGGTCAAA
* *
40736099 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTG
40736138 TCCACCTCTT
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 119 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (90 bp):
TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTGGCCAAATGCTTCCTCAAATTCTTCCA
TGAATTATGCATGATGTTGGTCAAA
Found at i:40739272 original size:68 final size:70
Alignment explanation
Indices: 40739163--40739305 Score: 245
Period size: 68 Copynumber: 2.1 Consensus size: 70
40739153 TCCAGACTCT
* *
40739163 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGG-CAAATTTTTTTT-T
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTAGGAAAAATTTTTTTTAT
40739226 TTTGA
66 TTTGA
40739231 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTAGGAAAAATTTTTTTTAT
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTAGGAAAAATTTTTTTTAT
*
40739296 TTTTA
66 TTTGA
40739301 TTTTT
1 TTTTT
40739306 ATTTTTTATT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
68 49 0.70
69 11 0.16
70 10 0.14
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (70 bp):
TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTAGGAAAAATTTTTTTTAT
TTTGA
Found at i:40739300 original size:6 final size:6
Alignment explanation
Indices: 40739289--40739319 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
40739279 GGAAAAATTT
40739289 TTTTTA TTTTTA TTTTTA TTTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA
40739320 CAAAACCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:40739311 original size:13 final size:12
Alignment explanation
Indices: 40739289--40739319 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
40739279 GGAAAAATTT
40739289 TTTTTATTTTTA
1 TTTTTATTTTTA
40739301 TTTTTATTTTTTA
1 TTTTTA-TTTTTA
40739314 TTTTTA
1 TTTTTA
40739320 CAAAACCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:40739990 original size:45 final size:45
Alignment explanation
Indices: 40739941--40740159 Score: 312
Period size: 45 Copynumber: 4.9 Consensus size: 45
40739931 TCGGCCATGG
* * * *
40739941 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* *
40739986 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* *
40740031 TGATTCCTCAAATTCTACCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
*
40740076 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* * * **
40740121 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
40740160 TCCACCTCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 156 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
Found at i:40744196 original size:60 final size:60
Alignment explanation
Indices: 40744096--40744235 Score: 167
Period size: 60 Copynumber: 2.3 Consensus size: 60
40744086 AACTGTGTTA
* * * *
40744096 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGACCCAGATTAATACTG
* * * *
40744156 ATATGGGCTAGGCCCAGTATAT-TCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATATCTC-GA-ATTGTAATAGGGCTACGACCCAGATTAATACTG
40744216 ATATGGGCTAAGGCCCAGTA
1 ATATGGGCT-AGGCCCAGTA
40744236 AAGCTTGAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.03
60 51 0.74
61 16 0.23
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGACCCAGATTAATACTG
Found at i:40747394 original size:29 final size:30
Alignment explanation
Indices: 40747350--40747409 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
40747340 ATCCCAAGCC
40747350 TAGGGGCAAAAATGTAAATATG-CAAAATT
1 TAGGGGCAAAAATGTAAATATGCCAAAATT
* * * *
40747379 TAGGGGTAAAATTGTAATTTTGCCAAAATT
1 TAGGGGCAAAAATGTAAATATGCCAAAATT
40747409 T
1 T
40747410 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATGCCAAAATT
Found at i:40747875 original size:46 final size:46
Alignment explanation
Indices: 40747825--40748000 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
40747815 TGATTGAGCA
40747825 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
40747871 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
40747916 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
40747964 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40748001 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:40747981 original size:93 final size:93
Alignment explanation
Indices: 40747822--40747993 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
40747812 GGATGATTGA
*
40747822 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
40747887 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
40747915 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
40747979 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
40747994 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:40757913 original size:44 final size:42
Alignment explanation
Indices: 40757804--40757934 Score: 140
Period size: 44 Copynumber: 3.0 Consensus size: 42
40757794 TCTTCCATGT
* * *
40757804 AATCAAATATCGATGCCACTGT-TCCAGACAGGGTCTTACACGA
1 AATCAAATA-CGATGCCAATGTCT-TAGACATGGTCTTACACGA
* * *
40757847 AATCAAATACGATGTCGATGTCTTAGATATGGTCTTACACGTA
1 AATCAAATACGATGCCAATGTCTTAGACATGGTCTTACACG-A
*
40757890 AATCATAAGT-CGATGCCAATGTCTTAGACGTGGTCTTACACGA
1 AATCA-AA-TACGATGCCAATGTCTTAGACATGGTCTTACACGA
40757933 AA
1 AA
40757935 ACACATATCG
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 24 0.32
43 19 0.26
44 30 0.41
45 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCTTAGACATGGTCTTACACGA
Found at i:40765639 original size:24 final size:24
Alignment explanation
Indices: 40765612--40765663 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
40765602 TTAGTAAGTC
*
40765612 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
40765636 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
40765660 AAAT
1 AAAT
40765664 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:40767610 original size:24 final size:24
Alignment explanation
Indices: 40767583--40767634 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
40767573 TTAGTAAGTC
*
40767583 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
40767607 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
40767631 AAAT
1 AAAT
40767635 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:40780169 original size:49 final size:49
Alignment explanation
Indices: 40780116--40780271 Score: 170
Period size: 49 Copynumber: 3.2 Consensus size: 49
40780106 CTGCATGGTT
* * *
40780116 TAATTAAAATGCAAACTAAATGAACAAATGAGTTACATAATGCATGACA
1 TAATTAAAATGCAAACTTAATGAACATATGAGTTACTTAATGCATGACA
* * * *
40780165 TAATTTAAGATGC-AACTTAATTAACATAGGAGTTACTTAATACATGACA
1 TAA-TTAAAATGCAAACTTAATGAACATATGAGTTACTTAATGCATGACA
** * * * *
40780214 TAATTAAAACACAAACTTTATGAACATATGAGATGCTTTAATGCATGACT
1 TAATTAAAATGCAAACTTAATGAACATATGAGTTAC-TTAATGCATGACA
40780264 TAATTAAA
1 TAATTAAA
40780272 TGTGGAACAC
Statistics
Matches: 87, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
48 6 0.07
49 54 0.62
50 27 0.31
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (49 bp):
TAATTAAAATGCAAACTTAATGAACATATGAGTTACTTAATGCATGACA
Found at i:40786313 original size:29 final size:29
Alignment explanation
Indices: 40786255--40786438 Score: 182
Period size: 29 Copynumber: 6.4 Consensus size: 29
40786245 GACTGATTTT
* * *
40786255 GCACACATAGTG-CTCGATTA-AAGAACTC
1 GCACACATAGTGCCTCAATTACCA-ATCTC
40786283 GCACACATAGTGCCTCAATTACCAATCTC
1 GCACACATAGTGCCTCAATTACCAATCTC
* **
40786312 GCACACATAGTG-CTCGATTGAAGAA-CTC
1 GCACACATAGTGCCTCAATT-ACCAATCTC
*
40786340 GCACACATAGTGCCTCAACTACCAATCTC
1 GCACACATAGTGCCTCAATTACCAATCTC
**
40786369 GCACACATAGTG-CTCAATTGAAGAA-CTC
1 GCACACATAGTGCCTCAATT-ACCAATCTC
* ** *
40786397 GCACACATAGTGCCTCAACTACTGATCTA
1 GCACACATAGTGCCTCAATTACCAATCTC
40786426 GCACACATAGTGC
1 GCACACATAGTGC
40786439 TCGGTTGAAG
Statistics
Matches: 130, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
28 59 0.45
29 70 0.54
30 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.22
Consensus pattern (29 bp):
GCACACATAGTGCCTCAATTACCAATCTC
Found at i:40786316 original size:57 final size:57
Alignment explanation
Indices: 40786255--40786468 Score: 329
Period size: 57 Copynumber: 3.8 Consensus size: 57
40786245 GACTGATTTT
* *
40786255 GCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATCTC
1 GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
40786312 GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
1 GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
* ** *
40786369 GCACACATAGTGCTCAATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATCTA
1 GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
* * ** *
40786426 GCACACATAGTGCTCGGTTGAAGAGCTTACACACACAGTGCCT
1 GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCT
40786469 TATAATTTCA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (57 bp):
GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
Found at i:40786548 original size:40 final size:40
Alignment explanation
Indices: 40786478--40786796 Score: 482
Period size: 40 Copynumber: 8.0 Consensus size: 40
40786468 TTATAATTTC
*
40786478 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* * *
40786517 AGCACGAATGCTCTTAGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
40786557 AGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
40786597 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* ** *
40786637 AGCACGAATGCTCTTCGGGATTTAGCCTAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
40786677 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC-
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
40786716 CGACACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AG-CACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
40786757 AGCACGAATGCTCTTCGAGACTTAGCCCAGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
40786797 CTCAATTCTC
Statistics
Matches: 256, Mismatches: 20, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
39 14 0.05
40 241 0.94
41 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:40792927 original size:20 final size:20
Alignment explanation
Indices: 40792902--40792941 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
40792892 CCTCACTTAA
40792902 GCCGAATTATATAATCAACC
1 GCCGAATTATATAATCAACC
40792922 GCCGAATTATATAATCAACC
1 GCCGAATTATATAATCAACC
40792942 ACCATACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (20 bp):
GCCGAATTATATAATCAACC
Found at i:40794127 original size:44 final size:41
Alignment explanation
Indices: 40794025--40794142 Score: 119
Period size: 44 Copynumber: 2.8 Consensus size: 41
40794015 ATTAAATATT
* * * *
40794025 GATGCCACTGTCCCAGACAGGGTCTTACATGAAATCTTATAC
1 GATGCCAC-GTCCCAGACATGGTCTTACACGAAATCTCAAAC
* * *
40794067 GATGACGATGTTCCAGACATGGTCTTACACGTAAATCTCAAATC
1 GATG-CCACGTCCCAGACATGGTCTTACACG-AAATCTCAAA-C
*
40794111 GATGCCAACGTCCCAGACGTGGTCTTACACGA
1 GATGCC-ACGTCCCAGACATGGTCTTACACGA
40794143 TAACACATCT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
42 23 0.38
43 12 0.20
44 26 0.43
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (41 bp):
GATGCCACGTCCCAGACATGGTCTTACACGAAATCTCAAAC
Found at i:40797466 original size:28 final size:29
Alignment explanation
Indices: 40797407--40797470 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
40797397 TCTCGCACTC
40797407 TTTTTCAATTTTCTTTTCTTGCTCAATTTT
1 TTTTTCAATTTTCTTTTCTT-CTCAATTTT
*
40797437 TTTTTCAATTTT-TTTCTCTT-TCATTCTTT
1 TTTTTCAATTTTCTTT-TCTTCTCAAT-TTT
40797466 TTTTT
1 TTTTT
40797471 TCCTAAATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
28 4 0.13
29 11 0.35
30 16 0.52
ACGTcount: A:0.11, C:0.16, G:0.02, T:0.72
Consensus pattern (29 bp):
TTTTTCAATTTTCTTTTCTTCTCAATTTT
Found at i:40797555 original size:33 final size:34
Alignment explanation
Indices: 40797518--40797582 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
40797508 ATTTTCTTTT
**
40797518 TTTTCTCTC-TCAATCTCTTTTATTTTTCTTCCA
1 TTTTCTCTCATCAATAACTTTTATTTTTCTTCCA
* *
40797551 TTTTCTTTCATCAATAACTTTTCTTTTTCTTC
1 TTTTCTCTCATCAATAACTTTTATTTTTCTTC
40797583 TCCCTTATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 8 0.30
34 19 0.70
ACGTcount: A:0.14, C:0.25, G:0.00, T:0.62
Consensus pattern (34 bp):
TTTTCTCTCATCAATAACTTTTATTTTTCTTCCA
Found at i:40797557 original size:21 final size:22
Alignment explanation
Indices: 40797508--40797558 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
40797498 TTCTTATTTA
40797508 ATTTTC-TTTTTTTTCTCTCTC
1 ATTTTCTTTTTTTTTCTCTCTC
* *
40797529 AATCTCTTTTATTTTTCT-TC-C
1 ATTTTCTTTT-TTTTTCTCTCTC
40797550 ATTTTCTTT
1 ATTTTCTTT
40797559 CATCAATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 12 0.50
22 5 0.21
23 7 0.29
ACGTcount: A:0.10, C:0.22, G:0.00, T:0.69
Consensus pattern (22 bp):
ATTTTCTTTTTTTTTCTCTCTC
Found at i:40799558 original size:20 final size:21
Alignment explanation
Indices: 40799533--40799571 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
40799523 CATAATTGAC
40799533 CTTTTAATC-AAAATTTTATA
1 CTTTTAATCTAAAATTTTATA
*
40799553 CTTTTACTCTAAAATTTTA
1 CTTTTAATCTAAAATTTTA
40799572 CCTTTTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (21 bp):
CTTTTAATCTAAAATTTTATA
Found at i:40799576 original size:20 final size:19
Alignment explanation
Indices: 40799531--40799583 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
40799521 CACATAATTG
40799531 ACCTTTTAATCAAAATTTT
1 ACCTTTTAATCAAAATTTT
* *
40799550 ATACTTTTACTCTAAAATTTT
1 A-CCTTTTAATC-AAAATTTT
*
40799571 ACCTTTTATTCAA
1 ACCTTTTAATCAA
40799584 TTTAGTCCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.11
20 16 0.57
21 9 0.32
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (19 bp):
ACCTTTTAATCAAAATTTT
Found at i:40801926 original size:32 final size:32
Alignment explanation
Indices: 40801890--40801954 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
40801880 TAAGAATATG
40801890 TTAGAACATAATGCGAATGGGTGAATTAAGTT
1 TTAGAACATAATGCGAATGGGTGAATTAAGTT
*
40801922 TTAGAACATAATGCGAATTGGTGAATTAAGTT
1 TTAGAACATAATGCGAATGGGTGAATTAAGTT
40801954 T
1 T
40801955 GAATTTAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (32 bp):
TTAGAACATAATGCGAATGGGTGAATTAAGTT
Found at i:40804624 original size:33 final size:33
Alignment explanation
Indices: 40804580--40804658 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
40804570 GTGGTGACTA
* *
40804580 GTGAGTGGTGAGCGACGCTGGACAAC-GATGGTG
1 GTGATTGGTGAGCGACGCTAGACAACAG-TGGTG
* *
40804613 GTGATTGGTGAGCGACGCTAGATAGCAGTGGTG
1 GTGATTGGTGAGCGACGCTAGACAACAGTGGTG
40804646 GTGATTGGTGAGC
1 GTGATTGGTGAGC
40804659 AACAGGCGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 40 0.98
34 1 0.02
ACGTcount: A:0.20, C:0.13, G:0.44, T:0.23
Consensus pattern (33 bp):
GTGATTGGTGAGCGACGCTAGACAACAGTGGTG
Found at i:40805190 original size:24 final size:23
Alignment explanation
Indices: 40805163--40805238 Score: 68
Period size: 24 Copynumber: 3.3 Consensus size: 23
40805153 TGAATTAAAA
40805163 ATAAAAAAATATAATAATATGTTT
1 ATAAAAAAATA-AATAATATGTTT
**
40805187 AT-AAAAAATAAA-AATATCATT
1 ATAAAAAAATAAATAATATGTTT
* *
40805208 A-ATTAAAAATACATTAATATGTTT
1 ATA-AAAAAATA-AATAATATGTTT
40805232 ATAAAAA
1 ATAAAAA
40805239 TAATGGAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
21 8 0.20
22 9 0.22
23 9 0.22
24 13 0.32
25 1 0.03
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (23 bp):
ATAAAAAAATAAATAATATGTTT
Found at i:40805197 original size:21 final size:21
Alignment explanation
Indices: 40805167--40805242 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
40805157 TTAAAAATAA
40805167 AAAAATATAATAATATGTTTAT
1 AAAAA-ATAATAATATGTTTAT
* * *
40805189 AAAAAATAAAAATATCATTAAT
1 AAAAAATAATAATAT-GTTTAT
*
40805211 TAAAAATACATTAATATGTTTAT
1 AAAAAATA-A-TAATATGTTTAT
40805234 -AAAAATAAT
1 AAAAAATAAT
40805243 GGAATCTCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
20 1 0.02
21 10 0.23
22 23 0.52
23 5 0.11
24 5 0.11
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (21 bp):
AAAAAATAATAATATGTTTAT
Found at i:40805216 original size:16 final size:15
Alignment explanation
Indices: 40805195--40805225 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
40805185 TTATAAAAAA
40805195 TAAAAATATCATTAAT
1 TAAAAATA-CATTAAT
40805211 TAAAAATACATTAAT
1 TAAAAATACATTAAT
40805226 ATGTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (15 bp):
TAAAAATACATTAAT
Found at i:40805813 original size:12 final size:12
Alignment explanation
Indices: 40805791--40805819 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
40805781 ATAATGTGTG
40805791 TATAT-AATATA
1 TATATAAATATA
40805802 TATATAAATATA
1 TATATAAATATA
40805814 TATATA
1 TATATA
40805820 TATGAAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TATATAAATATA
Found at i:40808752 original size:43 final size:42
Alignment explanation
Indices: 40808579--40808770 Score: 215
Period size: 42 Copynumber: 4.5 Consensus size: 42
40808569 TAAGATTACG
* * * * *
40808579 TGTAAAACCATATCTGGGACATGGCATCAATATGAGGCTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACATCA
*
40808621 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACATCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACATCA
* * * **
40808663 TGTAAGATCATATCTGAGATATGGCATCGATATGAGACTTTT
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACATCA
* * * *
40808705 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATC-CCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGA-CATCA
*
40808748 TGTAAGACCATATTTGGGATATG
1 TGTAAGACCATATCTGGGATATG
40808771 ACATTGGTAT
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 92 0.73
43 33 0.26
44 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACATCA
Found at i:40817253 original size:43 final size:43
Alignment explanation
Indices: 40817182--40817303 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 43
40817172 ATCACATGTA
* * * *
40817182 TCGCATCCATTATGAACTTGGACAACTCAACGAGTTCGGATGC
1 TCGCATCTATAATGAACTCGGACCACTCAACGAGTTCGGATGC
*
40817225 TCGCATCTATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCTATAATGAACTCGGACCACTCAACGAGTTCGGATGC
* * * *
40817268 -CACATATATCACGAAC-CTGGACCACTCAACGAGTTC
1 TCGCATCTATAATGAACTC-GGACCACTCAACGAGTTC
40817304 AGACTTCTTA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 29 0.43
43 38 0.56
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (43 bp):
TCGCATCTATAATGAACTCGGACCACTCAACGAGTTCGGATGC
Found at i:40822521 original size:12 final size:11
Alignment explanation
Indices: 40822501--40822534 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
40822491 TCTCTCCCCC
40822501 AAATAAAATAA
1 AAATAAAATAA
*
40822512 AAACTAAAATAG
1 AAA-TAAAATAA
40822524 AAATAAAATAA
1 AAATAAAATAA
40822535 TTAACAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:40835612 original size:99 final size:101
Alignment explanation
Indices: 40835439--40835638 Score: 386
Period size: 99 Copynumber: 2.0 Consensus size: 101
40835429 GGAATGGCAT
40835439 AGGATGGGGTCATCTTCATTGGCCCTTATGTTACTCGGTTGGCTCGACACTTCGGGCTCCTCAGC
1 AGGATGGGGTCATCTTCATTGGCCCTTATGTTACTCGGTTGGCTCGACACTTCGGGCTCCTCAGC
40835504 ACTACGGCCCAAGAATCATCCCTTGCCCTCATCGGC
66 ACTACGGCCCAAGAATCATCCCTTGCCCTCATCGGC
40835540 AGGATGGGGTCATCTTCATTGGCCCTTAT-TTACTC-GTTGGCTCGACACTTCGGGCTCCTCAGC
1 AGGATGGGGTCATCTTCATTGGCCCTTATGTTACTCGGTTGGCTCGACACTTCGGGCTCCTCAGC
40835603 ACTACGGCCCAAGAATCATCCCTTGCCCTCATCGGC
66 ACTACGGCCCAAGAATCATCCCTTGCCCTCATCGGC
40835639 CAAATGTCTC
Statistics
Matches: 99, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
99 64 0.65
100 6 0.06
101 29 0.29
ACGTcount: A:0.17, C:0.33, G:0.23, T:0.27
Consensus pattern (101 bp):
AGGATGGGGTCATCTTCATTGGCCCTTATGTTACTCGGTTGGCTCGACACTTCGGGCTCCTCAGC
ACTACGGCCCAAGAATCATCCCTTGCCCTCATCGGC
Found at i:40843836 original size:13 final size:13
Alignment explanation
Indices: 40843818--40843852 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
40843808 CGGCTAACCT
40843818 ACATAATTAAATA
1 ACATAATTAAATA
40843831 ACATAATTAAATA
1 ACATAATTAAATA
*
40843844 AAATAATTA
1 ACATAATTA
40843853 TTCATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:40844090 original size:21 final size:20
Alignment explanation
Indices: 40844062--40844114 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
40844052 AATGAAGAAA
* *
40844062 AAAT-GAGCTGAAATGAGCT
1 AAATCGAGCTCAAACGAGCT
*
40844081 AAATTCGAGCTCAAGCGAGCT
1 AAA-TCGAGCTCAAACGAGCT
*
40844102 AAATCGAGTTCAA
1 AAATCGAGCTCAA
40844115 GTGAGCTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 15 0.54
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.21
Consensus pattern (20 bp):
AAATCGAGCTCAAACGAGCT
Found at i:40844114 original size:20 final size:21
Alignment explanation
Indices: 40844076--40844121 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
40844066 GAGCTGAAAT
40844076 GAGCTAAATTCGAGCTCAAGC
1 GAGCTAAATTCGAGCTCAAGC
* *
40844097 GAGCTAAA-TCGAGTTCAAGT
1 GAGCTAAATTCGAGCTCAAGC
40844117 GAGCT
1 GAGCT
40844122 GATTGGAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.22
Consensus pattern (21 bp):
GAGCTAAATTCGAGCTCAAGC
Found at i:40845449 original size:17 final size:19
Alignment explanation
Indices: 40845427--40845463 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
40845417 TATTCCATAA
40845427 TTATATT-T-CTTAATGTT
1 TTATATTATACTTAATGTT
40845444 TTATATTATACTTAATGTT
1 TTATATTATACTTAATGTT
40845463 T
1 T
40845464 GGATTATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
19 10 0.56
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATATTATACTTAATGTT
Found at i:40854130 original size:3 final size:3
Alignment explanation
Indices: 40854122--40854159 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
40854112 CTCTATCTAT
40854122 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
40854160 ATTATTATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:40867267 original size:19 final size:19
Alignment explanation
Indices: 40867214--40867267 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
40867204 AAGTATTACC
*
40867214 ATACAAATTGAAAAAATTA
1 ATACAAATTAAAAAAATTA
40867233 ATTACAAA-TAAAAAAATTA
1 A-TACAAATTAAAAAAATTA
40867252 A-ACAAATTAAATAAAA
1 ATACAAATTAAA-AAAA
40867268 CATTCAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 5 0.16
18 4 0.13
19 16 0.52
20 6 0.19
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (19 bp):
ATACAAATTAAAAAAATTA
Found at i:40868506 original size:35 final size:35
Alignment explanation
Indices: 40868428--40868496 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
40868418 TAGCAAGTTC
40868428 AAATACATATAAACACAAGTTAATTAATAAATTTT
1 AAATACATATAAACACAAGTTAATTAATAAATTTT
40868463 AAATACATATAAACACAAGTTAATTAATAAATTT
1 AAATACATATAAACACAAGTTAATTAATAAATTT
40868497 ACTTTACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (35 bp):
AAATACATATAAACACAAGTTAATTAATAAATTTT
Found at i:40872847 original size:18 final size:20
Alignment explanation
Indices: 40872811--40872857 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
40872801 AGTTGTAAGT
40872811 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
40872831 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
40872850 ATGATATA
1 AT-ATATA
40872858 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:40873295 original size:50 final size:50
Alignment explanation
Indices: 40873206--40873447 Score: 229
Period size: 50 Copynumber: 4.8 Consensus size: 50
40873196 TCCATTGTAA
* * *
40873206 GTCACGTTTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * ** * * *
40873256 GTCGCTTGTGTAGTACTAAGTGCAGGCTACTATACGTACCCG-TTAGCTTCG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT-G-ATAG
* * * * * *
40873307 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* *
40873357 TTCACGTGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCAAATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTA-TGTGTACCAGATTGATAG
* * * *
40873407 GTCGA-ATATGTAGTATTAAGTGCAGGCTACTATGCGTACCA
1 GTC-ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
40873448 AAGAGCTTCG
Statistics
Matches: 153, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
49 3 0.02
50 111 0.73
51 38 0.25
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
Found at i:40873396 original size:101 final size:101
Alignment explanation
Indices: 40873207--40873388 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
40873197 CCATTGTAAG
* * * * * *
40873207 TCACGTTTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCTTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACGTGTGTAGTAC
40873272 TAAGTGCAGGCTACTATACGTACCCGTTAGCTTCGA
66 TAAGTGCAGGCTACTATACGTACCCGTTAGCTTCGA
* * *
40873308 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAATTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACGTGTGTAGTAC
40873373 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
40873389 CTTGTACCAA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTATACGTACCCGTTAGCTTCGA
Found at i:40874328 original size:180 final size:180
Alignment explanation
Indices: 40873996--40874329 Score: 422
Period size: 180 Copynumber: 1.9 Consensus size: 180
40873986 AGAGCTGTAT
* * * * * * *
40873996 CATGAGATAAATAATTGTTAGTGAAGAGAGGTCGGAATTTTTAGATAGTGAAACATGGGTATCTT
1 CATGAGATAAATAATTGTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAACAAGGGTATATT
* * * * *
40874061 TAACGAATAAAATGTACTAATTGGATAAACAAAAAATTCTTAAAATTTTATGGTAAGAATATATG
66 TAACGAATAAAATGTACTAATTGCATAAACAAAAAATTCTAAAAATTTTATAGTAAGAAGATATA
* *
40874126 TGAGTTTAGTTTTTAGTAAAATTAGTGTTTCTCAATTTGGAGTCCAGTAC
131 TGAGTCTAGTTTATAGTAAAATTAGTGTTTCTCAATTTGGAGTCCAGTAC
* * *
40874176 CATGATATAAATAATTTTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAATAAGGGTATATT
1 CATGAGATAAATAATTGTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAACAAGGGTATATT
* * * * *
40874241 TAATGAATAAACTGTACTTATT-CACTAGACCAAAAATTC-AAATAATTTTATAGTAAGAAGATA
66 TAACGAATAAAATGTACTAATTGCA-TAAACAAAAAATTCTAAA-AATTTTATAGTAAGAAGATA
40874304 TATGAGTCTAGTTTCATA-TAAAATTA
129 TATGAGTCTAGTTT-ATAGTAAAATTA
40874330 ACGGATATTA
Statistics
Matches: 129, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
179 3 0.02
180 124 0.96
181 2 0.02
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.34
Consensus pattern (180 bp):
CATGAGATAAATAATTGTTAGTGAAGAGAGATCAGAACTGTCAGATAGTGAAACAAGGGTATATT
TAACGAATAAAATGTACTAATTGCATAAACAAAAAATTCTAAAAATTTTATAGTAAGAAGATATA
TGAGTCTAGTTTATAGTAAAATTAGTGTTTCTCAATTTGGAGTCCAGTAC
Found at i:40876787 original size:16 final size:17
Alignment explanation
Indices: 40876758--40876794 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
40876748 AAAATCCTAG
40876758 CTTTTTCTCCTTTCTTT
1 CTTTTTCTCCTTTCTTT
*
40876775 CTTTTT-TCTTTTCTTT
1 CTTTTTCTCCTTTCTTT
40876791 CTTT
1 CTTT
40876795 CCTTCTCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTTCTCCTTTCTTT
Found at i:40876894 original size:5 final size:5
Alignment explanation
Indices: 40876872--40876921 Score: 75
Period size: 5 Copynumber: 10.0 Consensus size: 5
40876862 GTTTTATTAT
*
40876872 ATATA ATATA GA-AAA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA -ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
40876922 TATTTATACT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 1 0.02
5 39 0.95
6 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:40876972 original size:15 final size:15
Alignment explanation
Indices: 40876886--40876972 Score: 65
Period size: 15 Copynumber: 5.8 Consensus size: 15
40876876 AATATAGAAA
40876886 AATATA-ATATAATAT
1 AATATATAT-TAATAT
40876901 AATATA-ATATAATAT
1 AATATATAT-TAATAT
40876916 AATATATATT--TAT
1 AATATATATTAATAT
* * *
40876929 ACTTATATGTTAAGTAA
1 A-ATATATATTAA-TAT
* *
40876946 AAGATATTTTAATAT
1 AATATATATTAATAT
40876961 AATATATATTAA
1 AATATATATTAA
40876973 ATTCAAAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
13 4 0.07
14 7 0.12
15 34 0.59
16 10 0.17
17 3 0.05
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (15 bp):
AATATATATTAATAT
Found at i:40885715 original size:27 final size:27
Alignment explanation
Indices: 40885669--40885785 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
40885659 TCATACACAT
* * *
40885669 GTCATTTTACCTTACCGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTTCA
40885696 GTCATTTTACCCTACAGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTTCA
* * * *
40885723 ATCATTCTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCA
* *
40885750 GTCATTTTACCCTA-TGAGGGTATTTCG
1 GTCATTTTACCCTACAG-GGGTATTTCA
40885777 GTCATTTTA
1 GTCATTTTA
40885786 TCATATAAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTTCA
Found at i:40885810 original size:27 final size:27
Alignment explanation
Indices: 40885777--40885904 Score: 186
Period size: 27 Copynumber: 4.7 Consensus size: 27
40885767 GGGTATTTCG
*
40885777 GTCATTTTATCATATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGAAAAATC
* * *
40885804 ATTATTTTATCATATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGAAAAATC
40885831 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGAAAAATC
*
40885858 GTCATTTTATCACATAA-GTACAAAATC
1 GTCATTTTATCACATAAGGGA-AAAATC
*
40885885 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
40885905 TTCAGGTATG
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.02
27 88 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGAAAAATC
Found at i:40890754 original size:6 final size:6
Alignment explanation
Indices: 40890743--40890774 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
40890733 CCTGATATTC
*
40890743 CCCTTT CCCTTT CCCTTT CCCTTT CTCTTT CC
1 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT CC
40890775 AATCCCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
CCCTTT
Found at i:40891602 original size:13 final size:13
Alignment explanation
Indices: 40891584--40891617 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
40891574 GGTATGGTAT
**
40891584 GTTAATTAATTGA
1 GTTAATTAATACA
40891597 GTTAATTAATACA
1 GTTAATTAATACA
40891610 GTTAATTA
1 GTTAATTA
40891618 TTTTTTCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (13 bp):
GTTAATTAATACA
Found at i:40892221 original size:3 final size:3
Alignment explanation
Indices: 40892213--40892238 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
40892203 TAGCTATTTG
40892213 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
40892239 GGACATCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:40893513 original size:27 final size:27
Alignment explanation
Indices: 40893483--40893700 Score: 229
Period size: 27 Copynumber: 8.1 Consensus size: 27
40893473 GGCAAAATGA
* * * *
40893483 TAATTTTACCCCACATGGGTATCTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
**
40893510 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
40893537 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
40893564 TAATTCTACCCTATAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
*
40893591 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * * *
40893618 CAATTCTACCTTACAAGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
40893645 TAATTCTACCCTATAGAGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * * *
40893672 TATTTCTACCTTACAAGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
40893699 TA
1 TA
40893701 TTTTACAAAT
Statistics
Matches: 155, Mismatches: 36, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:40893528 original size:54 final size:54
Alignment explanation
Indices: 40893470--40893582 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
40893460 TTAACACCCT
*
40893470 AGGGGCAAAATGATAATTT-TACCCCACATGGGTATCTCAGTAATTCTACCCTAC
1 AGGGGCAAAATGAT-ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
* *** * * * * *
40893524 AGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAT
1 AGGGGCAAAATGATATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
40893578 AGGGG
1 AGGGG
40893583 TATTTCAATA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (54 bp):
AGGGGCAAAATGATATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
Found at i:40893583 original size:54 final size:54
Alignment explanation
Indices: 40893485--40893703 Score: 253
Period size: 54 Copynumber: 4.1 Consensus size: 54
40893475 CAAAATGATA
* * * * * *
40893485 ATTT-TACCCCACATGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGT
* * * *
40893538 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGT
* * * *
40893592 AATTCTACCCTACAGGGGTATTTCGGCAATTCTACCTTACAAGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGT
* * * *
40893646 AATTCTACCCTA-TAGAGGTATTTCGGTATTTCTACCTTACAAGGGTATTTTAGT
1 ATTTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGT
40893700 ATTT
1 ATTT
40893704 TACAAATCAG
Statistics
Matches: 143, Mismatches: 21, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
53 5 0.03
54 138 0.97
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGT
Found at i:40893625 original size:81 final size:81
Alignment explanation
Indices: 40893499--40893695 Score: 277
Period size: 81 Copynumber: 2.4 Consensus size: 81
40893489 TACCCCACAT
* * * * *
40893499 GGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCCTACAAGGGTATTTCAG
40893564 TAATTCTACCCTATAG
66 TAATTCTACCCTATAG
* * *
40893580 GGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCTTACAAGGGTATTTTAG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCCTACAAGGGTATTTCAG
40893645 TAATTCTACCCTATAG
66 TAATTCTACCCTATAG
* * * * *
40893661 AGGTATTTCGGTATTTCTACCTTACAAGGGTATTT
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
40893696 TAGTATTTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 102 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCCTACAAGGGTATTTCAG
TAATTCTACCCTATAG
Found at i:40893741 original size:27 final size:27
Alignment explanation
Indices: 40893688--40893787 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
40893678 TACCTTACAA
*
40893688 GGGTATTTTAGT-ATTTTACAAATCAG
1 GGGTATTTTAGTAATTTTACAAACCAG
* *
40893714 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTAGTAATTTTACAAACCAG
*
40893741 GGGTATTTTAGTAATTCTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACCAG
*
40893768 GGGTATTTTTGTAATTTTAC
1 GGGTATTTTAGTAATTTTAC
40893788 TGATCGAGGG
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 11 0.17
27 54 0.83
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACCAG
Found at i:40893774 original size:54 final size:54
Alignment explanation
Indices: 40893687--40893812 Score: 166
Period size: 54 Copynumber: 2.4 Consensus size: 54
40893677 CTACCTTACA
* *
40893687 AGGGTATTTTAGT-ATTTTACAAATCAGGGGTATTTTGGTAATTTTA-TAAACC
1 AGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACTAAACC
* * * *
40893739 AGGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTTGTAATTTTACTGATCG
1 A-GGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACTAAACC
*
40893794 AGGGTATTTTGGTAATTCT
1 AGGGTATTTTAGTAATTCT
40893813 GTAAATCGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
52 1 0.02
53 12 0.19
54 47 0.73
55 4 0.06
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACTAAACC
Found at i:40893820 original size:27 final size:27
Alignment explanation
Indices: 40893687--40893972 Score: 141
Period size: 27 Copynumber: 10.6 Consensus size: 27
40893677 CTACCTTACA
* * *
40893687 AGGGTATTTTAGT-ATTTTACAAATC-
1 AGGGTATTTTGGTAATTCTATAAATCG
* *
40893712 AGGGGTATTTTGGTAATTTTATAAA-CC
1 A-GGGTATTTTGGTAATTCTATAAATCG
* * *
40893739 AGGGGTATTTTAGTAATTCTACAAA-CC
1 A-GGGTATTTTGGTAATTCTATAAATCG
* * *
40893766 AGGGGTATTTTTGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTCTA-TAAATCG
*
40893794 AGGGTATTTTGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
**** *
40893821 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
*** *
40893848 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
**** * * *
40893875 AGGGTAAAACGATAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
* ****
40893902 ATGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTCTATAAATCG
* * * * *
40893929 AGGATATTTGGGTAGTTTTATAAACCG
1 AGGGTATTTTGGTAATTCTATAAATCG
* *
40893956 GGGGTACTTTGGTAATT
1 AGGGTATTTTGGTAATT
40893973 TTACAACTAG
Statistics
Matches: 211, Mismatches: 44, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
25 1 0.00
26 13 0.06
27 195 0.92
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.36
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTCTATAAATCG
Found at i:40893837 original size:54 final size:54
Alignment explanation
Indices: 40893803--40893931 Score: 213
Period size: 54 Copynumber: 2.4 Consensus size: 54
40893793 GAGGGTATTT
*
40893803 TGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAA
* *
40893857 TGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGATGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAA
* *
40893911 CGGTAATTCTATAAATCGAGG
1 TGGTAATTCTGTAAATCGAGG
40893932 ATATTTGGGT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAA
Found at i:40893972 original size:81 final size:81
Alignment explanation
Indices: 40893792--40893974 Score: 197
Period size: 81 Copynumber: 2.3 Consensus size: 81
40893782 TTTTACTGAT
* * *
40893792 CGAGGGTATTTTGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
1 CGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAA
* *
40893857 TGGTAATTCTGTAAAT
66 TGGTAATTCTATAAAC
*** * * * **
40893873 CGAGGGTAAAACGATAATTTTGTAAATCGATGGTAAAACGGTAATTCTATAAATCGAGGAT-ATT
1 CGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAA
* *
40893937 TGGGTAGTTTTATAAAC
66 T-GGTAATTCTATAAAC
* *
40893954 CGGGGGTACTTTGGTAATTTT
1 CGAGGGTAATTTGGTAATTTT
40893975 ACAACTAGGG
Statistics
Matches: 80, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
80 2 0.03
81 78 0.98
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (81 bp):
CGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAA
TGGTAATTCTATAAAC
Found at i:40901462 original size:28 final size:28
Alignment explanation
Indices: 40901422--40901477 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
40901412 CATAAACACA
*
40901422 CAGAATTTTCACCCTTTTACCAATCAGT
1 CAGAATTTTCACCCTTTTACAAATCAGT
40901450 CAGAATTTTCACCCTTTTACAAATCAGT
1 CAGAATTTTCACCCTTTTACAAATCAGT
40901478 TTCTAATTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (28 bp):
CAGAATTTTCACCCTTTTACAAATCAGT
Found at i:40905314 original size:19 final size:19
Alignment explanation
Indices: 40905283--40905321 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
40905273 TCATTTGCAT
40905283 AACACAATACATAAACATA
1 AACACAATACATAAACATA
*
40905302 AACATCAAT-CATAACCATA
1 AACA-CAATACATAAACATA
40905321 A
1 A
40905322 GCATGATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.59, C:0.23, G:0.00, T:0.18
Consensus pattern (19 bp):
AACACAATACATAAACATA
Found at i:40905534 original size:49 final size:49
Alignment explanation
Indices: 40905457--40905555 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
40905447 AAGTATAAAC
* *
40905457 ACAAAAATTAACCATATGTGTTCTTGTCATCCACAATCTCAATCGGAGA
1 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
40905506 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
1 ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
40905555 A
1 A
40905556 TTGAAACATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.27
Consensus pattern (49 bp):
ACAAAAATTAACCATATGTGTTCCTGTCATCCACAATCTCAATAGGAGA
Found at i:40905831 original size:40 final size:40
Alignment explanation
Indices: 40905764--40906020 Score: 338
Period size: 40 Copynumber: 6.5 Consensus size: 40
40905754 ATCATCAGAT
* * *
40905764 CAACC-AAACACACCAGACAGAAGCTCATAAGAGCTAATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
* * *
40905803 CAACCAAAACACGCCACAA-AGAAACTCATAAAAGCTTATC
1 CAACCAAAACACGCCA-AACAGAAGCTCATAAGAGCTGATC
*
40905843 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGTTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
* *
40905883 CAATCAAAACACGCTAAACAGAAGCTCATAAGAGCTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
** *
40905923 CAACTGAAACACGCCAAACAGAAGCTCATAAGAGTTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
* * *
40905963 CAATCAAAACATGCCAAACAGAAGCTTATAAGAGCTGATC
1 CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
* *
40906003 CAACCGAAACACTCCAAA
1 CAACCAAAACACGCCAAA
40906021 TAAAAAGTAT
Statistics
Matches: 188, Mismatches: 27, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
39 7 0.04
40 180 0.96
41 1 0.01
ACGTcount: A:0.46, C:0.28, G:0.13, T:0.13
Consensus pattern (40 bp):
CAACCAAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
Found at i:40907022 original size:23 final size:23
Alignment explanation
Indices: 40906992--40907037 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
40906982 TACTTATTAA
40906992 TTAATTTATTAATATTAAAATAT
1 TTAATTTATTAATATTAAAATAT
40907015 TTAATTTATTAATATTAAAATAT
1 TTAATTTATTAATATTAAAATAT
40907038 ATCATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTAATTTATTAATATTAAAATAT
Found at i:40908455 original size:21 final size:21
Alignment explanation
Indices: 40908431--40908478 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
40908421 TATTTTGTTT
40908431 ATTTTGTTCATTTGTAACTTG
1 ATTTTGTTCATTTGTAACTTG
* * *
40908452 ATTTAGTTCCTTTGTAATTTG
1 ATTTTGTTCATTTGTAACTTG
40908473 ACTTTT
1 A-TTTT
40908479 AGAGTTAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.58
Consensus pattern (21 bp):
ATTTTGTTCATTTGTAACTTG
Found at i:40920474 original size:32 final size:32
Alignment explanation
Indices: 40920437--40920504 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
40920427 GCTAAATTTC
* * * *
40920437 TAATCAATTCTAATTTCTTTAAGGGTTTGTAT
1 TAATCAATCCTAATTTCTTCAAGGATTTATAT
*
40920469 TAATCAATCCTATTTTCTTCAAGGATTTATAT
1 TAATCAATCCTAATTTCTTCAAGGATTTATAT
40920501 TAAT
1 TAAT
40920505 TATCTTCTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.49
Consensus pattern (32 bp):
TAATCAATCCTAATTTCTTCAAGGATTTATAT
Found at i:40927851 original size:23 final size:23
Alignment explanation
Indices: 40927825--40927890 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
40927815 GATAATTAAG
40927825 GAATACTGATGTGTGTAATATGT
1 GAATACTGATGTGTGTAATATGT
* **
40927848 GAATTCT-AT-AAT-T-A-A-G-
1 GAATACTGATGTGTGTAATATGT
40927864 GAATACTGATGTGTGTAATATGT
1 GAATACTGATGTGTGTAATATGT
40927887 GAAT
1 GAAT
40927891 TCTAACAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 14
0.60 0.12 0.28
Matches are distributed among these distances:
16 6 0.20
17 3 0.10
18 2 0.07
19 2 0.07
20 2 0.07
21 2 0.07
22 3 0.10
23 10 0.33
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (23 bp):
GAATACTGATGTGTGTAATATGT
Found at i:40927859 original size:39 final size:39
Alignment explanation
Indices: 40927816--40927894 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
40927806 GAACGCAAAG
40927816 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
1 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
40927855 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
1 ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
40927894 A
1 A
40927895 ACAAATAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.38
Consensus pattern (39 bp):
ATAATTAAGGAATACTGATGTGTGTAATATGTGAATTCT
Found at i:40934544 original size:47 final size:48
Alignment explanation
Indices: 40934427--40934548 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 48
40934417 GTGCGAATGA
* *
40934427 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATCTCAGAGAGAAGT
* * *
40934475 TACCTTGATTTGGATACGGGCCATGGTATAGGTA-CTCAGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATCTCAGAGAGAAGT
*
40934522 TACCTTGATTTGGCTACAGGCCATGGT
1 TACCTTGATTTGGCTACGGGCCATGGT
40934549 TTAGCAACTT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 34 0.51
48 33 0.49
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTATCTCAGAGAGAAGT
Found at i:40940652 original size:14 final size:14
Alignment explanation
Indices: 40940631--40940671 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
40940621 TTGCAACTTG
40940631 CACAACTTGCACAT
1 CACAACTTGCACAT
** *
40940645 TGCAACTTGCAAAT
1 CACAACTTGCACAT
40940659 CACAACTTGCACA
1 CACAACTTGCACA
40940672 AGTAGGTAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (14 bp):
CACAACTTGCACAT
Found at i:40944249 original size:79 final size:80
Alignment explanation
Indices: 40944150--40944370 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
40944140 CTCGTTCAAG
* * ** * *
40944150 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
40944213 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
40944229 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
40944294 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
40944309 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
40944371 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:40944301 original size:80 final size:80
Alignment explanation
Indices: 40944190--40944370 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
40944180 CTCATTCAAT
* * *
40944190 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
40944253 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
40944269 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
40944333 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
40944350 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
40944371 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:40944330 original size:40 final size:40
Alignment explanation
Indices: 40944187--40944370 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
40944177 TAACTCATTC
* *
40944187 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
40944227 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
40944267 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
40944307 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
40944348 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
40944371 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:40952144 original size:79 final size:80
Alignment explanation
Indices: 40952045--40952265 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
40952035 CTCGTTCAAG
* * ** * *
40952045 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
40952108 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
40952124 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
40952189 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
40952204 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
40952266 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:40952196 original size:80 final size:80
Alignment explanation
Indices: 40952085--40952265 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
40952075 CTCATTCAAT
* * *
40952085 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
40952148 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
40952164 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
40952228 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
40952245 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
40952266 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:40952225 original size:40 final size:40
Alignment explanation
Indices: 40952082--40952265 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
40952072 TAACTCATTC
* *
40952082 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
40952122 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
40952162 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
40952202 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
40952243 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
40952266 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:40954251 original size:205 final size:205
Alignment explanation
Indices: 40953886--40954297 Score: 725
Period size: 205 Copynumber: 2.0 Consensus size: 205
40953876 CGCCCGTGTC
* *
40953886 CATAAACCGTTTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
1 CATAAACCGTGTCCTTCACACAGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
* * * * *
40953951 GACGTTAGCAATCCTTAAGGGCCACACGGCTAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
66 GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTACTAAACCCTGCCCTTC
* * *
40954016 ATACGGCTGAGGCACATGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGAGTTGAAA
131 ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
40954081 TTTTTATGTG
196 TTTTTATGTG
40954091 CATAAACCGTGTCCTTCACACAGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
1 CATAAACCGTGTCCTTCACACAGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
40954156 GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTACTAAACCCTGCCCTTC
66 GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTACTAAACCCTGCCCTTC
*
40954221 ACACGGCTGAGGCACACGGCAGTGTCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
131 ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
40954286 TTTTTATGTG
196 TTTTTATGTG
40954296 CA
1 CA
40954298 GGGGACACAC
Statistics
Matches: 196, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
205 196 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (205 bp):
CATAAACCGTGTCCTTCACACAGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTACTAAACCCTGCCCTTC
ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
TTTTTATGTG
Found at i:40962973 original size:13 final size:13
Alignment explanation
Indices: 40962955--40962979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40962945 TAAAAAATGT
40962955 AAAAATCATTAAG
1 AAAAATCATTAAG
40962968 AAAAATCATTAA
1 AAAAATCATTAA
40962980 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAAATCATTAAG
Found at i:40972166 original size:46 final size:47
Alignment explanation
Indices: 40972012--40972182 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 47
40972002 TTTGTGCCCT
** * **
40972012 AGTGTAAGACATGTCCAGGACATGCATCAGCCACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAGAGCC
** * ** ** *
40972058 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGA-CAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGATGTAGAGCC
40972106 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAGAGCC
*
40972152 AGTGTAAGACATGTCTGAGACATGCATCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
40972183 TACGAGATGT
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 52 0.52
47 27 0.27
48 21 0.21
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAGAGCC
Found at i:40979603 original size:47 final size:47
Alignment explanation
Indices: 40979531--40979659 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 47
40979521 TCATTTGTGC
*
40979531 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCACATT-ATGAGA
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCACATTAACGAGA
* *
40979577 GCTAGTGTAAGACCATGTCTGGGACATGGCAT-TG--ACATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTATGGGACAT-GCATCGGCCACATT-A-ACGAGA
*
40979625 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTATGGGACATGCATCGGCC
40979660 TCGAGACGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
45 5 0.07
46 16 0.23
47 28 0.40
48 21 0.30
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTATGGGACATGCATCGGCCACATTAACGAGA
Found at i:40988494 original size:42 final size:42
Alignment explanation
Indices: 40988435--40988517 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
40988425 ATCCTAATTG
* * *
40988435 GGAAAATAATTTCCTTATTCTAATCAACTACTAAAACATAAT
1 GGAAAATAAATCCCTTATTCTAATAAACTACTAAAACATAAT
*
40988477 GGAAAATAAATCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAAATCCCTTATTCTAATAAACTACTAAAACATAA
40988518 AATAAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.30
Consensus pattern (42 bp):
GGAAAATAAATCCCTTATTCTAATAAACTACTAAAACATAAT
Found at i:40988572 original size:19 final size:18
Alignment explanation
Indices: 40988550--40988587 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
40988540 AATAAAACTC
40988550 ATCTACCAAAATAAGATTT
1 ATCTACCAAAATAA-ATTT
*
40988569 ATCTACCTAAATAAATTT
1 ATCTACCAAAATAAATTT
40988587 A
1 A
40988588 AAATATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (18 bp):
ATCTACCAAAATAAATTT
Found at i:40989146 original size:16 final size:16
Alignment explanation
Indices: 40989125--40989156 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
40989115 AGTGTAATGC
40989125 CCTAAAAATCCCGAAA
1 CCTAAAAATCCCGAAA
40989141 CCTAAAAATCCCGAAA
1 CCTAAAAATCCCGAAA
40989157 TCCAGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCTAAAAATCCCGAAA
Found at i:40990550 original size:29 final size:28
Alignment explanation
Indices: 40990492--40990605 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
40990482 GTGAGAATGA
* * ** *
40990492 ATATGAATGTGACTGGGCCTAACAGTCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
40990520 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
40990549 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
40990578 ATATGAATAT-ATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
40990605 A
1 A
40990606 GATACAGGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 16 0.22
28 12 0.16
29 45 0.62
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:40994929 original size:29 final size:29
Alignment explanation
Indices: 40994874--40994988 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
40994864 GTGAGAATGA
* * * *
40994874 ATATGAATGTGA-CTGGGCCTAACGGGCT
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
40994902 ATATAAATGTGATTTGGGTCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
40994931 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
40994960 ATATGAATATGA-TTAGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
40994988 A
1 A
40994989 GATACAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 26 0.36
29 46 0.64
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:40994994 original size:57 final size:58
Alignment explanation
Indices: 40994887--40994997 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
40994877 TGAATGTGAC
* * * * *
40994887 TGGGCCTAACGGGCTATATAAATGTGATTTGGGTCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCTCTAATGGGCCAGATACAGGTGATT
* *
40994945 TGGGCCTAATGGGCCATATGAATATGATTAGGCT-TAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCTCTAATGGGCCAGATACAGGT
40994998 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCTCTAATGGGCCAGATACAGGTGATT
Found at i:41004086 original size:19 final size:20
Alignment explanation
Indices: 41004062--41004099 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
41004052 GGTACCACCA
41004062 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
41004081 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
41004100 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:41005366 original size:32 final size:33
Alignment explanation
Indices: 41005330--41005406 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
41005320 GCTTGGATCA
41005330 CTTACTATGGAGCTT-GAAGCTTGAAACAAACC
1 CTTACTATGGAGCTTGGAAGCTTGAAACAAACC
41005362 CTTACTATGGAGCTTGGAAGCTTGAAACAAACC
1 CTTACTATGGAGCTTGGAAGCTTGAAACAAACC
41005395 C-TAGCTATGGAG
1 CTTA-CTATGGAG
41005407 AACCCTTGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
32 17 0.40
33 26 0.60
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (33 bp):
CTTACTATGGAGCTTGGAAGCTTGAAACAAACC
Found at i:41011977 original size:93 final size:93
Alignment explanation
Indices: 41011867--41012037 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
41011857 GCCCCTAAGT
* *
41011867 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
41011932 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
41011960 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
41012025 CGAGTTCGGATGC
66 CGAGTTCGGATGC
41012038 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:41012034 original size:46 final size:46
Alignment explanation
Indices: 41011862--41012034 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
41011852 AACCCGCCCC
* * * *
41011862 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
41011908 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
41011956 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
41012001 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
41012035 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:41025640 original size:29 final size:28
Alignment explanation
Indices: 41025597--41025656 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
41025587 TACAAGCTGT
* * *
41025597 ATGCACTCAACAAAATCATCATAGCAGC
1 ATGCACTCAACAAAAACATAACAGCAGC
*
41025625 ATGCACTTTAACAAAAACATAACAGCAGC
1 ATGCAC-TCAACAAAAACATAACAGCAGC
41025654 ATG
1 ATG
41025657 GTTGGCCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.18
Consensus pattern (28 bp):
ATGCACTCAACAAAAACATAACAGCAGC
Found at i:41026827 original size:78 final size:78
Alignment explanation
Indices: 41026698--41026850 Score: 234
Period size: 78 Copynumber: 2.0 Consensus size: 78
41026688 AATGTCACCT
* * *
41026698 TTAGTTGGGAAGCCAGACCATGTGATTCCACAAGCCATATCTTTTAAAGATTTGTCCATTGAAAC
1 TTAGTTGGGAAGCAAGACCATGTGATTCCACAAACCATATCTTTTAAAGATTTGTCCATTAAAAC
41026763 TTCTTTTCCATCA
66 TTCTTTTCCATCA
* * * * *
41026776 TTAGTTGGGAAGCAAGACTATGTGATTCCTCAAATCATTTCTTTTAAAGATTTTTCCATTAAAAC
1 TTAGTTGGGAAGCAAGACCATGTGATTCCACAAACCATATCTTTTAAAGATTTGTCCATTAAAAC
41026841 TTCTTTTCCA
66 TTCTTTTCCA
41026851 CCACACATTC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 67 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (78 bp):
TTAGTTGGGAAGCAAGACCATGTGATTCCACAAACCATATCTTTTAAAGATTTGTCCATTAAAAC
TTCTTTTCCATCA
Found at i:41042769 original size:30 final size:30
Alignment explanation
Indices: 41042733--41042793 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
41042723 CATTTAATAC
* *
41042733 AAACTTTGGAAAAATTACATTTTTTCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
41042763 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
41042793 A
1 A
41042794 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:41049413 original size:93 final size:93
Alignment explanation
Indices: 41049302--41049473 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
41049292 CGTCCATAAG
* * * *
41049302 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTATCCAAAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCAAAAGTGAACTCGGACTCAACTCA
*
41049367 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGAATGCCTAGTTACATCTCA
* *
41049395 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCAAAAGTGAACTCGGACTCAACTCA
*
41049460 ACGAGTTCGAATGC
66 ACGAGCTCGAATGC
41049474 TCAAATATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCAAAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCTAGTTACATCTCA
Found at i:41049468 original size:46 final size:46
Alignment explanation
Indices: 41049294--41049464 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
41049284 ATGTAACCCG
* * *
41049294 TCCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
* * * *
41049340 TCCAAAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCA
* *
41049390 T-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
*
41049433 TCCATAAGTGAACTCGGACTCAACTCAACGAG
1 TCCATAAGCGAACTCGGACTCAACTCAACGAG
41049465 TTCGAATGCT
Statistics
Matches: 101, Mismatches: 15, Indels: 18
0.75 0.11 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 27 0.27
48 1 0.01
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
Found at i:41055741 original size:23 final size:23
Alignment explanation
Indices: 41055709--41055752 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
41055699 ACTACTATTT
41055709 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
41055732 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
41055753 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:41055745 original size:13 final size:11
Alignment explanation
Indices: 41055713--41055755 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
41055703 CTATTTTCTA
*
41055713 AATAAAATAAT
1 AATAAAATATT
41055724 AAT-AAATATCT
1 AATAAAATAT-T
41055735 AAGTAAAATATT
1 AA-TAAAATATT
41055747 AATAAAATA
1 AATAAAATA
41055756 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:41059871 original size:27 final size:27
Alignment explanation
Indices: 41059841--41060000 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
41059831 GGGGCAAAAT
* * *
41059841 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
41059868 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
41059895 AGTAATTCTACCCGACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
41059922 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
41059949 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
41059976 GGTAATTCTACCCTACAAGGGTATT
1 GGTAATTCTACCCTACAAGGGTATT
41060001 CAATAATTTT
Statistics
Matches: 114, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:41059900 original size:54 final size:54
Alignment explanation
Indices: 41059842--41060008 Score: 237
Period size: 54 Copynumber: 3.1 Consensus size: 54
41059832 GGGCAAAATG
* *
41059842 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
41059896 GTAATTCTACCCGACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
41059950 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTA-TTCA
1 GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
41060003 ATAATT
1 GTAATT
41060009 TTGTAAGTCG
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 8 0.08
54 92 0.92
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:41060058 original size:27 final size:27
Alignment explanation
Indices: 41060004--41060387 Score: 185
Period size: 27 Copynumber: 14.3 Consensus size: 27
41059994 GGGTATTCAA
* ***
41060004 TAATTTTGTAAGTCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
* *
41060031 TAATTTTGTAAATCGGGGGTACTTTGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
* *
41060058 TAATTTT-TACAAGTTGAGGGTATTTTAG
1 TAATTTTGTA-AA-TCGAGGGTATTTTGG
* *
41060086 TAATTTTGCAAA-CTAAGGGTATTTTGG
1 TAATTTTGTAAATC-GAGGGTATTTTGG
***
41060113 TAATTTCACAAATC-AGGGTATTTTGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
** *
41060139 TAATTTTACAAA-CCAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
* * *
41060166 TAA-TTTGTAAACCAAAGGTATTTTGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
** * * *
41060192 TAATTTTACAAGTCAAGGGTATTTTAG
1 TAATTTTGTAAATCGAGGGTATTTTGG
*** * *
41060219 TAATTTCACAGAT-TAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
** * **
41060246 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTGTAAATCGAGGGTATTTTGG
***
41060273 TAATTTCACAAATC-AGAGGTATTTTGG
1 TAATTTTGTAAATCGAG-GGTATTTTGG
*** *
41060300 TAATTTCACAAA-CTAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
** *
41060327 TAATTTTACAAA-CCAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
** * *
41060354 TAATTTTACAAA-CCAGGGGTATTTTAG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
41060381 TAATTTT
1 TAATTTT
41060388 ACAAATTGAG
Statistics
Matches: 299, Mismatches: 44, Indels: 28
0.81 0.12 0.08
Matches are distributed among these distances:
25 1 0.00
26 49 0.16
27 225 0.75
28 23 0.08
29 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTATTTTGG
Found at i:41060388 original size:27 final size:27
Alignment explanation
Indices: 41060075--41060392 Score: 356
Period size: 27 Copynumber: 11.9 Consensus size: 27
41060065 TACAAGTTGA
* * * *
41060075 GGGTATTTTAGTAATTTTGCAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
41060102 GGGTATTTTGGTAATTTCACAAATCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
41060128 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
41060155 GGGTATTTTGGTAATTTGT--AAACCAA
1 GGGTATTTTGGTAATTT-TACAAACCAG
* ** *
41060181 AGGTATTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * **
41060208 GGGTATTTTAGTAATTTCACAGATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
41060235 GGGTATTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
41060261 AGGGTATTTCAGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
41060289 AGGTATTTTGGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
41060316 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
41060343 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
41060370 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
41060393 TTGAGGCCAT
Statistics
Matches: 249, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 47 0.19
27 199 0.80
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:41060414 original size:54 final size:54
Alignment explanation
Indices: 41060028--41060398 Score: 342
Period size: 54 Copynumber: 6.9 Consensus size: 54
41060018 GAGGGTAAAA
** * * * *
41060028 TGGTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTTACAAGTTGAGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAA-TTTTACAAATTGAGGGTATTT
* * * * * *
41060083 TAGTAATTTTGCAAACTAAGGGTATTTTGGTAATTTCACAAA-TCAGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
*** *
41060136 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGT--AAACCAAAGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT-TACAAATTGAGGGTATTT
** * * * *
41060189 TGGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTCACAGATT-AGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTT
** ** * *
41060243 TGGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTCACAAA-TCAGAGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAATTGAG-GGTATTT
* * **
41060297 TGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTT
*
41060351 TGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATTGAGG
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATTGAGG
41060399 CCATTTTAAT
Statistics
Matches: 262, Mismatches: 43, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
52 3 0.01
53 85 0.32
54 145 0.55
55 29 0.11
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
Found at i:41060414 original size:81 final size:81
Alignment explanation
Indices: 41060028--41060394 Score: 418
Period size: 81 Copynumber: 4.5 Consensus size: 81
41060018 GAGGGTAAAA
** * * * *
41060028 TGGTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTTACAAGTT-GAGGGTATTTTAGTAATTT
1 TGGTAATTTTACAAATCAGGGGTATTTTGGTAA-TTTTACAAATTAG-GGGTATTTTGGTAATTT
* *
41060092 TGCAAACTAAGGGTATTT
64 TACAAACCAAGGGTATTT
* **
41060110 TGGTAATTTCACAAATCA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGT
1 TGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTT-T
*
41060174 --AAACCAAAGGTATTT
65 ACAAACCAAGGGTATTT
* * * * *
41060189 TGGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTCACAGATTAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
** *
41060254 CAAGTCGAGGGTATTT
66 CAAACCAAGGGTATTT
** * * * *
41060270 CAGTAATTTCACAAATCAGAGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
*
41060335 CAAACCAGGGGTATTT
66 CAAACCAAGGGTATTT
* *
41060351 TGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATT
1 TGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATT
41060395 GAGGCCATTT
Statistics
Matches: 237, Mismatches: 43, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
79 30 0.13
80 63 0.27
81 130 0.55
82 14 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
TGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
CAAACCAAGGGTATTT
Found at i:41060917 original size:17 final size:17
Alignment explanation
Indices: 41060895--41060928 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
41060885 CCAATTCGAA
41060895 TAGAAATGAAGTGTCGC
1 TAGAAATGAAGTGTCGC
41060912 TAGAAATGAAGTGTCGC
1 TAGAAATGAAGTGTCGC
41060929 ATTCTTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
TAGAAATGAAGTGTCGC
Found at i:41065403 original size:69 final size:70
Alignment explanation
Indices: 41065271--41065403 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
41065261 TAGTTTATTA
* * * * *
41065271 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
41065336 CTTAG
66 CTTAG
41065341 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
41065404 GTTATGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:41066845 original size:47 final size:47
Alignment explanation
Indices: 41066791--41067099 Score: 492
Period size: 47 Copynumber: 6.6 Consensus size: 47
41066781 TATTTGAATA
41066791 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* **
41066838 AATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATACGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
*
41066885 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
*
41066932 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
*
41066979 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* * * * * *
41067026 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* *
41067073 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
41067100 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 243 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:41071099 original size:43 final size:43
Alignment explanation
Indices: 41071034--41071233 Score: 346
Period size: 43 Copynumber: 4.7 Consensus size: 43
41071024 CAGATTAAAT
* *
41071034 CTAGCAGGCTTCGTACCGGTGATGTGCATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* *
41071077 CTAGCAGGCTTCGTGCCAGTGATGTGTATTAGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
41071120 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
*
41071163 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
*
41071206 CTAGCAGGCTTCATGCCGGTGATGTGTA
1 CTAGCAGGCTTCGTGCCGGTGATGTGTA
41071234 GCCGGTGATG
Statistics
Matches: 149, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 149 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
Done.