Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 132 of 332
Found at i:43051510 original size:72 final size:73
Alignment explanation
Indices: 43051427--43051573 Score: 190
Period size: 72 Copynumber: 2.0 Consensus size: 73
43051417 TTTAATGCTA
* * *
43051427 TCCCAAGTCCCATGCACACACTAAATTCGGCTG-GTTGGGAAAATACAACAG-CAACTTTCGCTT
1 TCCCAAGTCCCATGCACACAATAAATTCGGCAGCGTTGGAAAAATACAACAGCCAACTTT-GCTT
43051490 TAAATGCCG
65 TAAATGCCG
* * * * * *
43051499 TCCCAAGTCCCATGCACTCAATAAATTCGGCAGCTTTGGAAAAATGCAGCAGCCACCTTTTCTTT
1 TCCCAAGTCCCATGCACACAATAAATTCGGCAGCGTTGGAAAAATACAACAGCCAACTTTGCTTT
43051564 AAATGCCG
66 AAATGCCG
43051572 TC
1 TC
43051574 GATGTACCTG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 30 0.47
73 28 0.44
74 6 0.09
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (73 bp):
TCCCAAGTCCCATGCACACAATAAATTCGGCAGCGTTGGAAAAATACAACAGCCAACTTTGCTTT
AAATGCCG
Found at i:43051781 original size:16 final size:16
Alignment explanation
Indices: 43051760--43051791 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
43051750 CATTCTGCAT
43051760 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
43051776 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
43051792 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:43060166 original size:14 final size:13
Alignment explanation
Indices: 43060147--43060199 Score: 88
Period size: 14 Copynumber: 3.9 Consensus size: 13
43060137 TATACTTCAA
43060147 AATTTTTTTTCTTG
1 AATTTTTTTT-TTG
43060161 AATTTTTTTTTTG
1 AATTTTTTTTTTG
43060174 AATTTTTTTTATTG
1 AATTTTTTTT-TTG
43060188 AATTTTTTTTTT
1 AATTTTTTTTTT
43060200 CCAAATTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
13 15 0.39
14 23 0.61
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (13 bp):
AATTTTTTTTTTG
Found at i:43060168 original size:13 final size:13
Alignment explanation
Indices: 43060150--43060196 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
43060140 ACTTCAAAAT
*
43060150 TTTTTTTCTTGAA
1 TTTTTTTATTGAA
*
43060163 TTTTTTTTTTGAA
1 TTTTTTTATTGAA
43060176 TTTTTTTTATTGAA
1 -TTTTTTTATTGAA
43060190 TTTTTTT
1 TTTTTTT
43060197 TTTCCAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 19 0.61
14 12 0.39
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (13 bp):
TTTTTTTATTGAA
Found at i:43060181 original size:27 final size:27
Alignment explanation
Indices: 43060147--43060199 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
43060137 TATACTTCAA
*
43060147 AATTTTTTTTCTTGAATTTTTTTTTTG
1 AATTTTTTTTATTGAATTTTTTTTTTG
43060174 AATTTTTTTTATTGAATTTTTTTTTT
1 AATTTTTTTTATTGAATTTTTTTTTT
43060200 CCAAATTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (27 bp):
AATTTTTTTTATTGAATTTTTTTTTTG
Found at i:43067026 original size:46 final size:46
Alignment explanation
Indices: 43066976--43067151 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
43066966 TGGTTGAGCA
43066976 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
43067022 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
43067067 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
43067115 -CTTGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
43067152 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 60 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:43067134 original size:93 final size:93
Alignment explanation
Indices: 43066973--43067144 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
43066963 GGATGGTTGA
*
43066973 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
43067038 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
43067066 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTTGAGCTCGTTGAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
43067130 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
43067145 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:43070017 original size:50 final size:50
Alignment explanation
Indices: 43069889--43070205 Score: 160
Period size: 48 Copynumber: 6.6 Consensus size: 50
43069879 GTATGATGCC
43069889 GATGCCATGTCCCAGACATGGTCTTACACT-GACTATCAAAATCGAGTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATCGAGTCA
* * * * *
43069938 GACT-CCATGTCCCAGACATGGTCTAACACTAG-CTTTCACATATC-CGTGCT
1 GA-TGCCATGTCCCAGACATGGTCTTACACTAGACTATCA-AAATCGAGT-CA
* * *** * *
43069988 GATGCCATGTCCCAGACATAGTCTTACACTA-AC-ACCTCTAT-GATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATCGAGT-CA
* **
43070036 GATGCCATGTCCCAAACATGGTCTTACACTA-AC-A-C-ATCTCGTAGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATCG-AGTCA
* * * * *
43070082 GATG-CATGTCCCAGACAT-GTCATACACTAG-CTCTC---ATCTTAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATC-GAGT-CA
* * * *
43070128 GATGCCATGTCCTAGACATGGTCTTACACTCG-CTCTCATAATAT-G-G-CC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGACTATCA-AA-ATCGAGTCA
*
43070176 GATG-CATGTCCTAGACAT-GTCTTACACTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAG
43070206 TACATAAATA
Statistics
Matches: 215, Mismatches: 31, Indels: 47
0.73 0.11 0.16
Matches are distributed among these distances:
44 15 0.07
45 14 0.07
46 22 0.10
47 30 0.14
48 61 0.28
49 36 0.17
50 35 0.16
53 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATCGAGTCA
Found at i:43070060 original size:48 final size:47
Alignment explanation
Indices: 43069988--43070204 Score: 189
Period size: 48 Copynumber: 4.7 Consensus size: 47
43069978 TATCCGTGCT
*
43069988 GATGCCATGTCCCAGACATAGTCTTACACTAACACCTCTATGATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACACCTCT-TGATTGCC
* * * * *
43070036 GATGCCATGTCCCAAACATGGTCTTACACTAACACATCTCG-TAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACACCTCTTGATTGCC
* * * *
43070082 GATG-CATGTCCCAGACAT-GTCATACACTAGCTCTCATCTT-AATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACAC-C-TCTTGATTGCC
* * * *
43070128 GATGCCATGTCCTAGACATGGTCTTACACT--CGCTCTCATAATATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACAC-CTCTTGAT-T-GCC
*
43070176 GATG-CATGTCCTAGACAT-GTCTTACACTA
1 GATGCCATGTCCCAGACATGGTCTTACACTA
43070205 GTACATAAAT
Statistics
Matches: 140, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 12 0.09
45 16 0.11
46 31 0.22
47 29 0.21
48 52 0.37
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAACACCTCTTGATTGCC
Found at i:43070145 original size:47 final size:46
Alignment explanation
Indices: 43070081--43070205 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 46
43070071 ATCTCGTAGT
* * **
43070081 CGATGCATGTCCCAGACATGTCATACACTAGCTCTCATCTTAAT-GC
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAAT-ATGGC
*
43070127 CGATGCCATGTCCTAGACATGGTCTTACACTCGCTCTCATAATATGGC
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATAATATGGC
43070175 CGATGCATGTCCTAGACATGTCTTACACTAG
1 CGATGCATGTCCTAGACATGTCTTACACTAG
43070206 TACATAAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
46 16 0.23
47 29 0.41
48 25 0.36
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATATGGC
Found at i:43070147 original size:92 final size:94
Alignment explanation
Indices: 43069988--43070157 Score: 240
Period size: 92 Copynumber: 1.8 Consensus size: 94
43069978 TATCCGTGCT
* *
43069988 GATGCCATGTCCCAGACATAGTCTTACACTAACACCTCTATGATTGCCGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATAGTCATACACTAACACCTCTATGAATGCCGATGCCATGTCCCAAAC
43070053 ATGGTCTTACACTAACACATCTCGTAGTC
66 ATGGTCTTACACTAACACATCTCGTAGTC
* * * *
43070082 GATG-CATGTCCCAGACAT-GTCATACACTAGCTCTCATCT-T-AATGCCGATGCCATGTCCTAG
1 GATGCCATGTCCCAGACATAGTCATACACTAACAC-C-TCTATGAATGCCGATGCCATGTCCCAA
43070143 ACATGGTCTTACACT
64 ACATGGTCTTACACT
43070158 CGCTCTCATA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
92 45 0.66
93 16 0.24
94 7 0.10
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATAGTCATACACTAACACCTCTATGAATGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAACACATCTCGTAGTC
Found at i:43070177 original size:140 final size:146
Alignment explanation
Indices: 43069880--43070204 Score: 356
Period size: 140 Copynumber: 2.3 Consensus size: 146
43069870 AAACATAGGG
*
43069880 TATGAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGTCAGACTCC
1 TATGATGGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGTCAGACTCC
* ** *
43069944 ATGTCCCAGACATGGTCTAACACTAGCTTTCACATATCCGTGCTGATGCCATGTCCCAGACATAG
66 ATGTCCCAGACATGGTCTAACACTAGCTCTCACATATCAATGCCGATGCCATGTCCCAGACATAG
43070009 TCTTACACTAACACCTC
131 TCTTACACT-ACACCTC
* * ** *
43070026 TATGATTGCCGATGCCATGTCCCAAACATGGTCTTACACTAAC-A-C-ATCTCGTAGTC-GA-TG
1 TATGATGGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCG-AGTCAGACTC
*
43070086 CATGTCCCAGACAT-GTC-ATACACTAGCTCTCATC-T-T-AATGCCGATGCCATGTCCTAGACA
65 CATGTCCCAGACATGGTCTA-ACACTAGCTCTCA-CATATCAATGCCGATGCCATGTCCCAGACA
* *
43070146 TGGTCTTACACT-CGCTCTC
128 TAGTCTTACACTACAC-CTC
*
43070165 ATAAT-ATGGCCGATG-CATGTCCTAGACAT-GTCTTACACTA
1 -T-ATGATGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
43070205 GTACATAAAT
Statistics
Matches: 157, Mismatches: 15, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
138 13 0.08
139 15 0.10
140 41 0.26
141 4 0.03
142 16 0.10
143 16 0.10
144 6 0.04
145 5 0.03
146 7 0.04
147 34 0.22
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (146 bp):
TATGATGGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGTCAGACTCC
ATGTCCCAGACATGGTCTAACACTAGCTCTCACATATCAATGCCGATGCCATGTCCCAGACATAG
TCTTACACTACACCTC
Found at i:43071059 original size:31 final size:31
Alignment explanation
Indices: 43071024--43071098 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
43071014 ACGGTTACTG
43071024 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
* *
43071055 GGCCGAAGCCTTTTCATAAATCATTTCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
43071086 GGCTGAAGCCTTT
1 GGCCGAAGCCTTT
43071099 ACTGTAAACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:43071173 original size:42 final size:42
Alignment explanation
Indices: 43071126--43071213 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
43071116 CCATAGGCCT
* ** ** *
43071126 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATAAATCTATGCAAGCCC
*
43071168 ATTTCAATATCATATGAAATACCAATAAATCTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATAAATCTATGCAAGCCC
43071210 ATTT
1 ATTT
43071214 AGGGAGACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATAAATCTATGCAAGCCC
Found at i:43071430 original size:26 final size:26
Alignment explanation
Indices: 43071346--43071481 Score: 170
Period size: 26 Copynumber: 5.3 Consensus size: 26
43071336 CTGGAGGCCT
* * *
43071346 AGCCTTTTTTAAT-AACTAGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
***
43071370 AGCCCTTTTTGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
43071395 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
43071421 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
43071447 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
43071473 AGCCCTTTT
1 AGCCCTTTT
43071482 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
24 10 0.10
25 30 0.31
26 57 0.59
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:43071470 original size:52 final size:51
Alignment explanation
Indices: 43071346--43071481 Score: 213
Period size: 52 Copynumber: 2.7 Consensus size: 51
43071336 CTGGAGGCCT
* * *
43071346 AGCCTTTTTTAAT-AACTAGGGCA-AAGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
43071395 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
*
43071447 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTT
43071482 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
49 11 0.14
50 10 0.12
51 24 0.30
52 35 0.44
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:43071556 original size:20 final size:20
Alignment explanation
Indices: 43071531--43071587 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
43071521 TTATGAATAC
*
43071531 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
43071550 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
43071571 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
43071588 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:43071648 original size:75 final size:75
Alignment explanation
Indices: 43071561--43071712 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
43071551 ATCATGTGCA
43071561 TATCATATCAATCATGTATATCATATCCCACGTATCAAATTTATAATTAAACCCTAGGGGTATAA
1 TATCATATCAATCATGTATATCATATCCCACGTATCAAATTTATAATTAAACCCTAGGGGTATAA
43071626 TGGTCATTTT
66 TGGTCATTTT
43071636 TATCATATCAATCATGTATATCATATCCCACGTATCAAATTTATAATTAAACCCTAGGGGTATAA
1 TATCATATCAATCATGTATATCATATCCCACGTATCAAATTTATAATTAAACCCTAGGGGTATAA
43071701 TGGTCATTTT
66 TGGTCATTTT
43071711 TA
1 TA
43071713 CCTAGGGGCA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.38
Consensus pattern (75 bp):
TATCATATCAATCATGTATATCATATCCCACGTATCAAATTTATAATTAAACCCTAGGGGTATAA
TGGTCATTTT
Found at i:43071716 original size:25 final size:25
Alignment explanation
Indices: 43071688--43071735 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
43071678 ATAATTAAAC
* * *
43071688 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
43071713 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
43071736 CATACGATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:43072390 original size:27 final size:27
Alignment explanation
Indices: 43072360--43072422 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
43072350 GGGCATATTC
43072360 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
43072387 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
43072414 GTCTTTTTA
1 GTCATTTTA
43072423 TCTATTAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:43072485 original size:27 final size:27
Alignment explanation
Indices: 43072455--43072608 Score: 159
Period size: 27 Copynumber: 5.7 Consensus size: 27
43072445 TTTCATCCTA
* * *
43072455 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
43072482 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
43072509 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
43072536 TAAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
43072562 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* *
43072589 CTAGGGGTGTTTTGGTAATT
1 C-AAGGGTATTTTGGTAATT
43072609 CTACCCTATA
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 101 0.97
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:43072541 original size:81 final size:81
Alignment explanation
Indices: 43072456--43072608 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 81
43072446 TTCATCCTAC
* * * **
43072456 AAGGGTGTTTTGGTAAATCT-ACAAATCAAG-GGTATTTTTGTAATTTTGTAAA-TCAGGGGTAT
1 AAGGGTATTTCGGT-AATCTCACAAA-CAAGTGGTATTTTGGTAATTTTACAAACT-AGGGGTAT
43072518 TTTGGTAATTTTACAAATT
63 TTTGGTAATTTTACAAATT
* * *
43072537 AAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTTTACAAACTAGGGGTGTTTT
1 AAGGGTATTTCGGTAATCTCACAAACAAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
43072602 GGTAATT
66 GGTAATT
43072609 CTACCCTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
80 7 0.11
81 53 0.87
82 1 0.02
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCGGTAATCTCACAAACAAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
GGTAATTTTACAAATT
Found at i:43072624 original size:81 final size:81
Alignment explanation
Indices: 43072486--43072641 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
43072476 ACAAATCAAG
* ** * *
43072486 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACAAATTAAGGGTATTTCAGT
43072551 AATTTCACAAACTAGT
66 AATTTCACAAACTAGT
* ** *
43072567 GGTATTTTGGTAATTTTACAAA-CTAGGGGTGTTTTGGTAATTCTAC-CCTATAGGGGTATTTCA
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTCTACAAAT-TAAGGGTATTTCA
43072630 GTAATTTCACAA
64 GTAATTTCACAA
43072642 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 2 0.03
81 62 0.97
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACAAATTAAGGGTATTTCAGT
AATTTCACAAACTAGT
Found at i:43072648 original size:27 final size:27
Alignment explanation
Indices: 43072510--43072641 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
43072500 TTTGTAAATC
* * *
43072510 AGGGGTATTTTGGTAATTTTACAAATT
1 AGGGGTATTTCGGTAATTTCACAAACT
*
43072537 AAGGGTATTTCGGTAATTTCACAAACT
1 AGGGGTATTTCGGTAATTTCACAAACT
* * *
43072564 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAAACT
* * **
43072591 AGGGGTGTTTTGGTAA-TTCTACCCTA-T
1 AGGGGTATTTCGGTAATTTC-A-CAAACT
*
43072618 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTCGGTAATTTCACAA
43072642 TCGAGGGTAA
Statistics
Matches: 84, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
26 3 0.04
27 76 0.90
28 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTCACAAACT
Found at i:43072820 original size:27 final size:28
Alignment explanation
Indices: 43072755--43072827 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
43072745 TACAAGTTGA
*
43072755 GGGTATTTCAGTAATTTTACAAATCAGG
1 GGGTATTTTAGTAATTTTACAAATCAGG
43072783 GGGTATTTTAGTAATTTTACAAA-CTA-G
1 GGGTATTTTAGTAATTTTACAAATC-AGG
43072810 GGGTATTTTAGTAATTTT
1 GGGTATTTTAGTAATTTT
43072828 GTAAATCGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
27 20 0.47
28 23 0.53
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (28 bp):
GGGTATTTTAGTAATTTTACAAATCAGG
Found at i:43072840 original size:27 final size:27
Alignment explanation
Indices: 43072620--43072868 Score: 137
Period size: 27 Copynumber: 9.2 Consensus size: 27
43072610 TACCCTATAG
* * *
43072620 GGGTATTTCAGTAATTTCA-CAATCGA
1 GGGTAATTCAGTAATTTTATAAATCGA
** * *
43072646 GGGTAAAAC-GATAATTTTGTAAATCAA
1 GGGTAATTCAG-TAATTTTATAAATCGA
** *
43072673 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAATTCAGTAATTTTATAAATCGA
** * * *
43072700 GGGTAAAACAATAATTCTATAAGTCGA
1 GGGTAATTCAGTAATTTTATAAATCGA
* ** *
43072727 GGGTACTTTGGTAATTTT-TACAAGTTGA
1 GGGTAATTCAGTAATTTTATA-AA-TCGA
* * *
43072755 GGGTATTTCAGTAATTTTACAAATCAGG
1 GGGTAATTCAGTAATTTTATAAATC-GA
* * * *
43072783 GGGTATTTTAGTAATTTTACAAA-CTA
1 GGGTAATTCAGTAATTTTATAAATCGA
* * *
43072809 GGGGTATTTTAGTAATTTTGTAAATCGA
1 -GGGTAATTCAGTAATTTTATAAATCGA
** *
43072837 GGGTAAAACGGTAATTTTATAAATCGA
1 GGGTAATTCAGTAATTTTATAAATCGA
43072864 GGGTA
1 GGGTA
43072869 GAACGGTAAT
Statistics
Matches: 175, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.01
26 14 0.08
27 113 0.65
28 46 0.26
29 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTAATTCAGTAATTTTATAAATCGA
Found at i:43078944 original size:42 final size:42
Alignment explanation
Indices: 43078896--43078987 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
43078886 ATATATAACG
43078896 CCAAATATAATCATGATTAGCCATTCCAATGGCTAATAATTA
1 CCAAATATAATCATGATTAGCCATTCCAATGGCTAATAATTA
*
43078938 CCAAATATAATCATGATTAGCCATTCCAATGGCTAATCATTA
1 CCAAATATAATCATGATTAGCCATTCCAATGGCTAATAATTA
43078980 CCAAATAT
1 CCAAATAT
43078988 TTCCATACCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (42 bp):
CCAAATATAATCATGATTAGCCATTCCAATGGCTAATAATTA
Found at i:43079656 original size:93 final size:93
Alignment explanation
Indices: 43079525--43079696 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
43079515 GCCCATAAGT
* * * *
43079525 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
43079590 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
43079618 GAACTCGGACTCAACTTAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
43079683 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
43079697 CAAAAATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:43079675 original size:46 final size:46
Alignment explanation
Indices: 43079517--43079692 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
43079507 TGTAACCCGC
* * * *
43079517 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
43079563 CCATAAGTGAACTCGGACTTAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * *
43079613 CTC-T---CGAACTCGGACTCAACTTAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
43079656 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
43079693 TGCCCAAAAA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 62 0.58
47 26 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:43081492 original size:6 final size:6
Alignment explanation
Indices: 43081481--43081510 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
43081471 CCTATGCTGT
43081481 TTGCTC TTGCTC TTGCTC TTGCTC TTGCTC
1 TTGCTC TTGCTC TTGCTC TTGCTC TTGCTC
43081511 GAGAACCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TTGCTC
Found at i:43085553 original size:6 final size:6
Alignment explanation
Indices: 43085523--43085635 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
43085513 AAGAAACATT
* * *
43085523 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
43085572 ATTAGA ATCAGA ATCAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA AT-AGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
43085622 ATCAGA ATTAGA AT
1 ATCAGA ATCAGA AT
43085636 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.77
7 9 0.11
8 4 0.05
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:43085578 original size:25 final size:25
Alignment explanation
Indices: 43085544--43085635 Score: 139
Period size: 25 Copynumber: 3.7 Consensus size: 25
43085534 AATCAAAATG
43085544 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
43085569 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* * *
43085594 AGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAGGTGAC
*
43085619 AGAATCAGAATTAGAAT
1 AGAATCAGAATCAGAAT
43085636 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:43085796 original size:27 final size:26
Alignment explanation
Indices: 43085757--43085838 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
43085747 TGACTGCCAT
* *
43085757 AACAGATATTGTGACAGAGTCACTAG
1 AACAGATATTGTGACAGAGCCACCAG
**
43085783 ATACAGATATTGTGGTAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
** *
43085810 AACAGATATTTGTGGTATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAG
43085837 AA
1 AA
43085839 ACAAATAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:43085850 original size:27 final size:27
Alignment explanation
Indices: 43085789--43085860 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
43085779 CTAGATACAG
* *
43085789 ATAT-TGTGGTAGAGCCACCAGAACAG
1 ATATATGTGGTAAAGCCACCAGAACAA
* *
43085815 ATATTTGTGGTATAGCCACCAGAAACAA
1 ATATATGTGGTAAAGCCACCAG-AACAA
*
43085843 ATA-ATGTGGAAAAGCCAC
1 ATATATGTGGTAAAGCCAC
43085861 TTAACAGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.10
27 28 0.72
28 7 0.18
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.21
Consensus pattern (27 bp):
ATATATGTGGTAAAGCCACCAGAACAA
Found at i:43086478 original size:27 final size:27
Alignment explanation
Indices: 43086447--43086988 Score: 555
Period size: 27 Copynumber: 20.3 Consensus size: 27
43086437 GAGGGTATCC
*
43086447 CAGTAATTCTACCTTACAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * *
43086474 TAGTATTTCTACCCTACAAGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* *
43086501 C-GATAATTCTACCCTACAAGGGTATTG
1 CAG-TAATTCTACCCTACAGGGGTATTT
43086528 CAGTAATTCTACCCTACAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * * *
43086555 CGGTAATTCTACCTTACAAGTGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
43086582 CAGTAATTCTACCCTACAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* *
43086609 C-GATAATTCTACCTTATAAGGGGTATTT
1 CAG-TAATTCTACCCTA-CAGGGGTATTT
* *
43086637 TAGTAATTCTACCCTAAAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
** * *
43086664 TGGTAATTCTACCTTATAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* *
43086691 CAATAATTCTACCCTACAAGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * *
43086718 CGGTAATTCTACCTTACAAGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * * *
43086745 TAGTATTTTTACCCTACAAGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * *
43086772 C-GATAATTCTACCTTATAAGGGTATTT
1 CAG-TAATTCTACCCTACAGGGGTATTT
* * **
43086799 TAGTAATTCTACACTACAAAGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * *
43086826 CAGTAATTCTACCTTACAAGGGTATTA
1 CAGTAATTCTACCCTACAGGGGTATTT
*
43086853 CAGTAATTCTACCCTATAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* *
43086880 CAGTAATTCTACCTTAC------CTTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* * *
43086901 -AATAATTCTACCCTAAAGAGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* *
43086927 CGGTAATTCTACCTTACAGGGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
* *
43086954 CAGAAATTCTACCCTACAGTGGTATTT
1 CAGTAATTCTACCCTACAGGGGTATTT
43086981 CAGTAATT
1 CAGTAATT
43086989 TTACAATCGA
Statistics
Matches: 427, Mismatches: 74, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
20 13 0.03
21 3 0.01
26 6 0.01
27 380 0.89
28 24 0.06
29 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (27 bp):
CAGTAATTCTACCCTACAGGGGTATTT
Found at i:43086508 original size:54 final size:54
Alignment explanation
Indices: 43086450--43086981 Score: 638
Period size: 54 Copynumber: 10.0 Consensus size: 54
43086440 GGTATCCCAG
* * *
43086450 TAATTCTACCTTACAGGGGTATTTTAGTATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * * *
43086504 TAATTCTACCCTACAAGGGTATTGCAGTAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* *
43086558 TAATTCTACCTTACAAGTGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * * *
43086612 TAATTCTACCTTATAAGGGGTATTTTAGTAATTCTACCCTA-AAGGGGTATTTTGG
1 TAATTCTACCTTACAA-GGGTATTTCAGTAATTCTACCCTACAA-GGGTATTTCGA
* * * *
43086667 TAATTCTACCTTATAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * *
43086721 TAATTCTACCTTACAAGGGTATTTTAGTATTTTTACCCTACAAGGGTATTTCGA
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * * *
43086775 TAATTCTACCTTATAAGGGTATTTTAGTAATTCTACACTACAAAGGTATTTC-A
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * *
43086828 GTAATTCTACCTTACAAGGGTATTACAGTAATTCTACCCTATAGGGGTATTTC-A
1 -TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * *
43086882 GTAATTCTACCTTAC------CTTT-AATAATTCTACCCTA-AAGAGGTATTTCGG
1 -TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAG-GGTATTTCGA
* *
43086930 TAATTCTACCTTACAGGGGTATTTCAGAAATTCTACCCTAC-AGTGGTATTTC
1 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAG-GGTATTTC
43086982 AGTAATTTTA
Statistics
Matches: 415, Mismatches: 49, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.00
47 36 0.09
48 2 0.00
53 4 0.01
54 323 0.78
55 48 0.12
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (54 bp):
TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
Found at i:43086950 original size:74 final size:74
Alignment explanation
Indices: 43086829--43086966 Score: 206
Period size: 74 Copynumber: 1.9 Consensus size: 74
43086819 GGTATTTCAG
* * *
43086829 TAATTCTACCTTACAAGGGTATTACAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCT
1 TAATTCTACCCTACAAGGGTATTACAGTAATTCTACCCTACAGGGGTATTTCAGAAATTCTACCT
43086894 TACCTTTAA
66 TACCTTTAA
* * *
43086903 TAATTCTACCCTA-AAGAGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGAAATTCTACC
1 TAATTCTACCCTACAAG-GGTATTACAGTAATTCTACCCTACAGGGGTATTTCAGAAATTCTACC
43086967 CTACAGTGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 3 0.05
74 54 0.95
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (74 bp):
TAATTCTACCCTACAAGGGTATTACAGTAATTCTACCCTACAGGGGTATTTCAGAAATTCTACCT
TACCTTTAA
Found at i:43087032 original size:27 final size:27
Alignment explanation
Indices: 43086974--43087095 Score: 124
Period size: 27 Copynumber: 4.6 Consensus size: 27
43086964 ACCCTACAGT
*
43086974 GGTATTTCAGTAATTTTAC-AATCGAC
1 GGTATTTCAGTAATTTTACAAATCGAG
43087000 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAAATCGAG
* ** * * *
43087027 GATATTTGGGTAATTTTATAAACCGGG
1 GGTATTTCAGTAATTTTACAAATCGAG
* * *
43087054 GGTACTTT-GGTAATTTTACAACT-GGG
1 GGTA-TTTCAGTAATTTTACAAATCGAG
43087080 GGTATTTCAGTAATTT
1 GGTATTTCAGTAATTT
43087096 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
25 3 0.04
26 33 0.41
27 42 0.52
28 3 0.04
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAG
Found at i:43089061 original size:6 final size:6
Alignment explanation
Indices: 43089031--43089143 Score: 90
Period size: 6 Copynumber: 18.3 Consensus size: 6
43089021 AAGAAACATT
* *
43089031 ATCAGAA AT-AGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- ATGACAGA
1 ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
43089080 ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGT ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
43089130 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
43089144 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 21
0.75 0.07 0.18
Matches are distributed among these distances:
5 8 0.09
6 65 0.74
7 11 0.12
8 4 0.05
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:43089085 original size:25 final size:25
Alignment explanation
Indices: 43089052--43089143 Score: 148
Period size: 25 Copynumber: 3.7 Consensus size: 25
43089042 AATCAAAATG
*
43089052 AGAATCAGAATCAGAATCAGATGAC
1 AGAATCAGAATCAGAATCAGGTGAC
43089077 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* * *
43089102 AGAATCAGTATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
43089127 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
43089144 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:43089963 original size:27 final size:27
Alignment explanation
Indices: 43089930--43090339 Score: 516
Period size: 27 Copynumber: 15.2 Consensus size: 27
43089920 GGTATCTCGA
* * *
43089930 TAATTCTACCCTACAGAGGTATTTTAT
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
43089957 TATTTCTACCCTACAAGGGTATTTCTG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
43089984 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
43090011 TAATTCTACCTTACAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
*
43090038 TAATTCTACCCTAAAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * * *
43090065 TAATTCGACCTTATAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
43090092 TAATTCTACCATACAGGAGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
43090119 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
43090146 TAATTCTACCCTCCAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
43090173 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * **
43090200 TAATTCTACCTTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
43090227 TAATTCTACCTTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
43090254 TAATTCTACCCTAAAGGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
*
43090280 ATAATTCTACCTTACAGGGGTATTTCAG
1 -TAATTCTACCCTACAGGGGTATTTCAG
*
43090308 TAATTCTACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
43090335 TAATT
1 TAATT
43090340 TTACAATCGA
Statistics
Matches: 329, Mismatches: 52, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 327 0.99
28 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:43090364 original size:26 final size:28
Alignment explanation
Indices: 43090327--43090395 Score: 101
Period size: 26 Copynumber: 2.6 Consensus size: 28
43090317 CCTACAGGGG
43090327 TATTTT-AGTAATTTTAC-AATCGACGA
1 TATTTTGAGTAATTTTACAAATCGACGA
*
43090353 TATTTTGA-TAATTTTACAAATCGAGGA
1 TATTTTGAGTAATTTTACAAATCGACGA
43090380 TA-TTTGAGTAATTTTA
1 TATTTTGAGTAATTTTA
43090396 TAAACCGGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
26 20 0.51
27 19 0.49
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (28 bp):
TATTTTGAGTAATTTTACAAATCGACGA
Found at i:43090382 original size:27 final size:28
Alignment explanation
Indices: 43090327--43090425 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
43090317 CCTACAGGGG
*
43090327 TATTTT-AGTAATTTTAC-AATCGACGA
1 TATTTTGAGTAATTTTACAAATCGAGGA
43090353 TATTTTGA-TAATTTTACAAATCGAGGA
1 TATTTTGAGTAATTTTACAAATCGAGGA
* * * *
43090380 TA-TTTGAGTAATTTTATAAACCGGGGG
1 TATTTTGAGTAATTTTACAAATCGAGGA
*
43090407 TACTTTG-GTAATTTTACAA
1 TATTTTGAGTAATTTTACAA
43090426 CTGGGGGTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 20 0.32
27 39 0.62
28 4 0.06
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.41
Consensus pattern (28 bp):
TATTTTGAGTAATTTTACAAATCGAGGA
Found at i:43092088 original size:42 final size:42
Alignment explanation
Indices: 43091963--43092080 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
43091953 ACATAGTACT
* * **
43091963 ATACCAATGCCATATCCTAGATATGGTCTTACATGGGATCTC
1 ATACCGATGCCATATCCCAGATATGGTCTTACATGAAATCTC
* * * *
43092005 ATATCGATGCCAATAGCCCAGTTTTGGTCTTACATGAAATCTC
1 ATACCGATGCC-ATATCCCAGATATGGTCTTACATGAAATCTC
*
43092048 ATACCGATGCCATATCCCAAATATGGTCTTACA
1 ATACCGATGCCATATCCCAGATATGGTCTTACA
43092081 CGTAATCTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 27 0.44
43 35 0.56
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATACCGATGCCATATCCCAGATATGGTCTTACATGAAATCTC
Found at i:43098894 original size:42 final size:42
Alignment explanation
Indices: 43098769--43098886 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
43098759 ACATAGTACT
* * * **
43098769 ATACCAATGCCATATCCTATATATAGTATTACATGGGATCTC
1 ATACCAATGCCATATCCTAGATATGGTCTTACATGAAATCTC
*** * *
43098811 ATATTGATGCCAATAGCCTAGCTATGGTCTTACATGAAATCTC
1 ATACCAATGCC-ATATCCTAGATATGGTCTTACATGAAATCTC
*
43098854 ATACCAATGCCATATCCCAGATATGGTCTTACA
1 ATACCAATGCCATATCCTAGATATGGTCTTACA
43098887 CGTAATCTTA
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (42 bp):
ATACCAATGCCATATCCTAGATATGGTCTTACATGAAATCTC
Found at i:43100527 original size:215 final size:215
Alignment explanation
Indices: 43100176--43100583 Score: 703
Period size: 215 Copynumber: 1.9 Consensus size: 215
43100166 AGTTTTCGAA
* * *
43100176 ATTATTCCAAATGGTTTAATGGGTATAGTGATATTACAAGAGTGTATGAGTTCGATATGAACCAG
1 ATTATTCCAAATGGTTCAATAGGTATAGTGATATTACAAGAGTGTATAAGTTCGATATGAACCAG
43100241 TACAAGTATGTACGTGAATCATGTGGAAATTGAATCTATGAGATTTGTGATTTCATAATTAACTT
66 TACAAGTATGTACGTGAATCATGTGGAAATTGAATCTATGAGATTTGTGATTTCATAATTAACTT
*
43100306 TGTTGGTAATTATATGTTAAGTTATTGACACCAAATTGAATTGCATTATGATTTAAATTACTTAT
131 TGTTGGTAATTATATGTTAAGTTATTGACACCAAACTGAATTGCATTATGATTTAAATTACTTAT
43100371 GAGATTCCTGAGTATCTGAT
196 GAGATTCCTGAGTATCTGAT
43100391 ATTATTCCAAATGGTTCAATAGGTACTA-TGATATTACGAA-AGTGTATAAGTTCGATATGAACC
1 ATTATTCCAAATGGTTCAATAGGTA-TAGTGATATTAC-AAGAGTGTATAAGTTCGATATGAACC
* * *
43100454 AGTACAGGTATGTACGTGAATCATGTGGAAATTGACTCTATGAGATTTGTGATTTCATAATTAAT
64 AGTACAAGTATGTACGTGAATCATGTGGAAATTGAATCTATGAGATTTGTGATTTCATAATTAAC
* *
43100519 TTTGTTGGTAATTATATGTTAAGTTATTGACTCCAAACTGTATTGCATTATGATTTAAATTACTT
129 TTTGTTGGTAATTATATGTTAAGTTATTGACACCAAACTGAATTGCATTATGATTTAAATTACTT
43100584 GTTTAATTGT
Statistics
Matches: 182, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
215 178 0.98
216 4 0.02
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (215 bp):
ATTATTCCAAATGGTTCAATAGGTATAGTGATATTACAAGAGTGTATAAGTTCGATATGAACCAG
TACAAGTATGTACGTGAATCATGTGGAAATTGAATCTATGAGATTTGTGATTTCATAATTAACTT
TGTTGGTAATTATATGTTAAGTTATTGACACCAAACTGAATTGCATTATGATTTAAATTACTTAT
GAGATTCCTGAGTATCTGAT
Found at i:43102245 original size:43 final size:41
Alignment explanation
Indices: 43102117--43102295 Score: 254
Period size: 41 Copynumber: 4.3 Consensus size: 41
43102107 TATTCGGGCT
43102117 TTATTGCCTAGCAGGCTTTGTGTCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGTCGGTGTATTATATCAGGC
*
43102158 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGTCGGTGTATTATATCAGGC
* * *
43102199 TTATTGCCTAGCAGGCTTTATATGTCGTTGTATTATATCAAGC
1 TTATTGCCTAGCAGGC-TT-TGTGTCGGTGTATTATATCAGGC
* *
43102242 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGTCGGTGTATTATATC-AGGC
43102283 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
43102296 AATTTTATGT
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
40 2 0.02
41 84 0.68
42 3 0.02
43 35 0.28
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGTCGGTGTATTATATCAGGC
Found at i:43102256 original size:84 final size:82
Alignment explanation
Indices: 43102117--43102295 Score: 272
Period size: 84 Copynumber: 2.2 Consensus size: 82
43102107 TATTCGGGCT
* * *
43102117 TTATTGCCTAGCAGGCTTTGTGTCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTATGTCGGTGTATTATATCAAGCTTATTGCCTAGCAGGCTCTGTGCC
43102182 GGTGTATTATA-TCAGGC
66 GGTGTATTATACT-AGGC
*
43102199 TTATTGCCTAGCAGGCTTTATATGTCGTTGTATTATATCAAGCTTATTGCCTAGCAGGCTCTGTG
1 TTATTGCCTAGCAGGC-TT-TATGTCGGTGTATTATATCAAGCTTATTGCCTAGCAGGCTCTGTG
43102264 CCGGTGTATTATACTAGGC
64 CCGGTGTATTATACTAGGC
43102283 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
43102296 AATTTTATGT
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
82 16 0.18
83 3 0.03
84 69 0.78
85 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (82 bp):
TTATTGCCTAGCAGGCTTTATGTCGGTGTATTATATCAAGCTTATTGCCTAGCAGGCTCTGTGCC
GGTGTATTATACTAGGC
Found at i:43107013 original size:22 final size:22
Alignment explanation
Indices: 43106982--43107023 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
43106972 ATCCGAGAGA
* *
43106982 GACAAGTTTTTGACTACAAGGC
1 GACAAATTTTTAACTACAAGGC
43107004 GACAAATTTTTAACTACAAG
1 GACAAATTTTTAACTACAAG
43107024 ACCGAGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (22 bp):
GACAAATTTTTAACTACAAGGC
Found at i:43130697 original size:6 final size:6
Alignment explanation
Indices: 43130695--43130808 Score: 65
Period size: 6 Copynumber: 18.2 Consensus size: 6
43130685 GTTGAAAAAG
* *
43130695 AAAG-A AAAGAA AACGAA AAAGAA AAGAGAA ATGAGAA AAAG-- AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AA-AGAA A-AAGAA AAAGAA AAAGAA
* * * *
43130742 ACAATAGC AAAGAA AGAG-A AAAGAA AACGAGAA AATGAA AAAGAAGA
1 A-AAGA-A AAAGAA AAAGAA AAAGAA AA--AGAA AAAGAA AAAG-A-A
43130789 AAACGAA AAAGAA AAAGAA A
1 AAA-GAA AAAGAA AAAGAA A
43130809 TGAAAAGTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 25
0.69 0.10 0.21
Matches are distributed among these distances:
4 4 0.05
5 8 0.10
6 38 0.45
7 21 0.25
8 12 0.14
9 1 0.01
ACGTcount: A:0.73, C:0.04, G:0.20, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:43130732 original size:20 final size:20
Alignment explanation
Indices: 43130709--43130811 Score: 63
Period size: 20 Copynumber: 5.0 Consensus size: 20
43130699 AAAAGAAAAC
43130709 GAAAAAGAAAAGAGAAATGA
1 GAAAAAGAAAAGAGAAATGA
*
43130729 GAAAAAG-AAAGAAACAATAGCAAA
1 GAAAAAGAAAAGAGA-AAT-G---A
* *
43130753 GAAAGAGAAAAGA-AAACGA
1 GAAAAAGAAAAGAGAAATGA
*
43130772 GAAAATGAAAAAGAAGAAA--A
1 GAAAAAG-AAAAG-AGAAATGA
43130792 CGAAAAAGAAAA-AGAAATGA
1 -GAAAAAGAAAAGAGAAATGA
43130812 AAAGTTTGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 24
0.68 0.06 0.25
Matches are distributed among these distances:
18 5 0.08
19 12 0.18
20 21 0.32
21 8 0.12
22 4 0.06
23 2 0.03
24 8 0.12
25 5 0.08
ACGTcount: A:0.71, C:0.04, G:0.21, T:0.04
Consensus pattern (20 bp):
GAAAAAGAAAAGAGAAATGA
Found at i:43130792 original size:23 final size:21
Alignment explanation
Indices: 43130689--43130807 Score: 81
Period size: 21 Copynumber: 5.7 Consensus size: 21
43130679 AATGAAGTTG
43130689 AAAAAGAAAGAA-AAGAAAACG
1 AAAAAGAAA-AAGAAGAAAACG
43130710 AAAAAG-AAAAG-AGAAATGA-G
1 AAAAAGAAAAAGAAGAAA--ACG
* * *
43130730 AAAAAGAAAGA-AACAATA-G
1 AAAAAGAAAAAGAAGAAAACG
* *
43130749 -CAAAGAAAGAGAAAAGAAAACG
1 AAAAAGAAA-A-AGAAGAAAACG
43130771 AGAAAATGAAAAAGAAGAAAACG
1 A-AAAA-GAAAAAGAAGAAAACG
43130794 AAAAAGAAAAAGAA
1 AAAAAGAAAAAGAA
43130808 ATGAAAAGTT
Statistics
Matches: 77, Mismatches: 9, Indels: 24
0.70 0.08 0.22
Matches are distributed among these distances:
18 7 0.09
19 9 0.12
20 10 0.13
21 27 0.35
22 5 0.06
23 11 0.14
24 4 0.05
25 4 0.05
ACGTcount: A:0.73, C:0.04, G:0.20, T:0.03
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAACG
Found at i:43136356 original size:27 final size:27
Alignment explanation
Indices: 43136044--43136357 Score: 272
Period size: 27 Copynumber: 11.6 Consensus size: 27
43136034 TTAGTTTACC
* *
43136044 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
43136071 AAATTACCAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TTGATTTGTA
*
43136098 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
43136125 AAATTACCAAAAAACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
43136152 AAATTATCAAAATACCCTT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * *
43136179 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
43136206 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
** * **
43136233 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * *
43136260 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * **
43136287 AAATCACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *** **
43136314 GAATTACTATTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
*
43136341 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
43136358 CTATAGGGTA
Statistics
Matches: 240, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.01
27 234 0.98
28 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:43136372 original size:27 final size:27
Alignment explanation
Indices: 43136342--43136707 Score: 498
Period size: 27 Copynumber: 13.6 Consensus size: 27
43136332 TGATTTACAA
*
43136342 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43136369 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43136396 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43136423 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
43136450 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43136477 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
43136504 AATTATCGTAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43136531 AATTATCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43136558 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
43136585 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43136612 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
43136639 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
43136666 AATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43136693 AATTATCGAGATACC
1 AATTACCGAAATACC
43136708 TTTGGGGTAA
Statistics
Matches: 302, Mismatches: 37, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 302 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:43137203 original size:22 final size:22
Alignment explanation
Indices: 43137151--43137215 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
43137141 TTAAAGCCTT
* *
43137151 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
43137173 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
43137195 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
43137216 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:43137404 original size:27 final size:27
Alignment explanation
Indices: 43137374--43137475 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
43137364 ATTCTATTAA
* *
43137374 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
43137401 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
43137428 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
43137455 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
43137476 ATAACTGAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:43137650 original size:6 final size:6
Alignment explanation
Indices: 43137635--43137731 Score: 56
Period size: 6 Copynumber: 15.8 Consensus size: 6
43137625 ATTCTGTTAC
* * * *
43137635 CTGATA CTGATT CTGATT TTGATT ATG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
43137684 CTGATT CTG-TCAC CTAATT CTAATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
43137732 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 61 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:43137667 original size:31 final size:31
Alignment explanation
Indices: 43137612--43137714 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
43137602 TTGCATTCAT
*
43137612 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
43137644 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * * *
43137675 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
43137706 ATTCTGATT
1 ATTCTGATT
43137715 CTAATTCTAG
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 56 0.89
32 7 0.11
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:43137715 original size:31 final size:31
Alignment explanation
Indices: 43137625--43137747 Score: 133
Period size: 31 Copynumber: 4.0 Consensus size: 31
43137615 CTGATTTTTT
*
43137625 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
*
43137656 ATTATGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * * * *
43137687 ATTCTGTCACCTAATTCTAATTCTGATTCTA
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
43137718 ATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 ATTCT-GTTACCTGATACTGATTCTGATTCTG
43137748 TAATGGGTTA
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
30 14 0.19
31 59 0.79
32 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:43143622 original size:146 final size:145
Alignment explanation
Indices: 43143450--43143725 Score: 525
Period size: 146 Copynumber: 1.9 Consensus size: 145
43143440 AAATTCTGCC
*
43143450 AAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTGGAAGATAAATTT
1 AAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTGAAAGATAAATTT
43143515 TAATATTTTATTAAATGAATTTATAAATTCACATATTTTAATAATTTTATATAAGTAAAAATAAT
66 TAATATTTTATTAAATGAATTTATAAATTCACATATTTTAATAATTTTATATAAGT-AAAATAAT
43143580 TATCATTTTATCTAAT
130 TATCATTTTATCTAAT
*
43143596 AAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTGAAAGATCAATTT
1 AAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTGAAAGATAAATTT
43143661 TAATATTTTATTAAATGAATTTATAAATTCACATATTTTAATAATTTTATATAAGTAAAATAATT
66 TAATATTTTATTAAATGAATTTATAAATTCACATATTTTAATAATTTTATATAAGTAAAATAATT
43143726 TAAAAACTTC
Statistics
Matches: 128, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
145 9 0.07
146 119 0.93
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (145 bp):
AAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTGAAAGATAAATTT
TAATATTTTATTAAATGAATTTATAAATTCACATATTTTAATAATTTTATATAAGTAAAATAATT
ATCATTTTATCTAAT
Found at i:43146809 original size:27 final size:27
Alignment explanation
Indices: 43146774--43146827 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
43146764 CTTACATTCA
* *
43146774 ACACATAGGGGTATTTTGGTTATTTTC
1 ACACATAGGGGCATTTTGGTAATTTTC
*
43146801 ACACTTAGGGGCATTTTGGTAATTTTC
1 ACACATAGGGGCATTTTGGTAATTTTC
43146828 CCTTTATTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (27 bp):
ACACATAGGGGCATTTTGGTAATTTTC
Found at i:43147182 original size:29 final size:29
Alignment explanation
Indices: 43147093--43147235 Score: 123
Period size: 29 Copynumber: 5.0 Consensus size: 29
43147083 ACATACATGC
* *
43147093 ATATGGCCCA-CTAGGCCCAA-TCTCATTT
1 ATATGGCCCATC-AGGCCCAATTCACATTA
* * **
43147121 ATATGGCCCATCCGGCCCAATTCACGTCC
1 ATATGGCCCATCAGGCCCAATTCACATTA
43147150 ATATGGCCCATCAGGCCCAATTCACATTA
1 ATATGGCCCATCAGGCCCAATTCACATTA
* * *
43147179 ATATGGTCCATTAGGCCCAATGT--CATTT
1 ATATGGCCCATCAGGCCCAAT-TCACATTA
* * * *
43147207 ATATGACCCATCTGACCCAAATCACATTA
1 ATATGGCCCATCAGGCCCAATTCACATTA
43147236 TATTCAAGCT
Statistics
Matches: 91, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
27 1 0.01
28 36 0.40
29 53 0.58
30 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAATTCACATTA
Found at i:43147211 original size:57 final size:56
Alignment explanation
Indices: 43147092--43147235 Score: 139
Period size: 57 Copynumber: 2.5 Consensus size: 56
43147082 TACATACATG
* * *
43147092 CATATGGCCCA-CTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTC
1 CATATGGCCCATC-AGGCCCAATCACATTAATATGGCCCATCAGGCCCAATTCAC-TC
* * *
43147149 CATATGGCCCATCAGGCCCAATTCACATTAATATGGTCCATTAGGCCCAATGTCA-TT
1 CATATGGCCCATCAGGCCCAA-TCACATTAATATGGCCCATCAGGCCCAAT-TCACTC
* * * *
43147206 TATATGACCCATCTGACCCAAATCACATTA
1 CATATGGCCCATCAGGCCC-AATCACATTA
43147236 TATTCAAGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
57 43 0.59
58 27 0.37
59 3 0.04
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (56 bp):
CATATGGCCCATCAGGCCCAATCACATTAATATGGCCCATCAGGCCCAATTCACTC
Found at i:43148379 original size:24 final size:24
Alignment explanation
Indices: 43148347--43148417 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
43148337 TCTGTCGGAG
43148347 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
43148371 AGGACTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
43148395 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
43148418 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.35, C:0.03, G:0.38, T:0.24
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:43148429 original size:48 final size:48
Alignment explanation
Indices: 43148347--43148440 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
43148337 TCTGTCGGAG
** * *
43148347 AGGATTTAGGAGTTGATAAGGGATAGGACTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGAATTAGGAGCTGATCAAGGGAT
43148395 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG-AAT-TAGGAGCTGATCAAGG
43148441 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
47 2 0.05
48 30 0.77
49 4 0.10
ACGTcount: A:0.35, C:0.05, G:0.37, T:0.22
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGAATTAGGAGCTGATCAAGGGAT
Found at i:43149902 original size:28 final size:27
Alignment explanation
Indices: 43149836--43149920 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
43149826 AGGAGGCGTC
*
43149836 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
43149863 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
43149891 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
43149917 CTGG
1 CTGG
43149921 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.10
27 31 0.61
28 15 0.29
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:43151001 original size:11 final size:10
Alignment explanation
Indices: 43150973--43151006 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
43150963 AGCCTGTAAG
43150973 TATTCTGAAT
1 TATTCTGAAT
*
43150983 TTTTCTGAAT
1 TATTCTGAAT
43150993 ATATTCTGAAT
1 -TATTCTGAAT
43151004 TAT
1 TAT
43151007 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:43156188 original size:24 final size:24
Alignment explanation
Indices: 43156156--43156226 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
43156146 TCTGTCGGAG
43156156 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
43156180 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
43156204 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
43156227 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:43156238 original size:48 final size:48
Alignment explanation
Indices: 43156156--43156249 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
43156146 TCTGTCGGAG
** * *
43156156 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
43156204 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
43156250 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:43157680 original size:27 final size:26
Alignment explanation
Indices: 43157641--43157745 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 26
43157631 GGAAGTGTCC
*
43157641 TGGTGGCTATGCCATAATTATCTGATT
1 TGGTGGCTCTGCCA-AATTATCTGATT
*
43157668 TGGTGGCTCTGCCACATATATCT-ATT
1 TGGTGGCTCTGCCAAAT-TATCTGATT
* * *
43157694 CTGGTGGTTCTGCCACGATTATCTGTATC
1 -TGGTGGCTCTGCCA-AATTATCTG-ATT
* * *
43157723 TGGTGACTCTGTCACATTATCTG
1 TGGTGGCTCTGCCAAATTATCTG
43157746 TTCTGGCAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
26 5 0.08
27 44 0.69
28 13 0.20
29 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (26 bp):
TGGTGGCTCTGCCAAATTATCTGATT
Found at i:43160037 original size:21 final size:21
Alignment explanation
Indices: 43160011--43160054 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
43160001 AATTGTTAAG
43160011 TTCAACATATGAAGGCATAAA
1 TTCAACATATGAAGGCATAAA
43160032 TTCAACATATGAAGGCATAAA
1 TTCAACATATGAAGGCATAAA
43160053 TT
1 TT
43160055 AATTGGTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (21 bp):
TTCAACATATGAAGGCATAAA
Found at i:43161042 original size:16 final size:16
Alignment explanation
Indices: 43161021--43161055 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
43161011 CCTTTGCTAC
43161021 CTCATTCAACACATTT
1 CTCATTCAACACATTT
* *
43161037 CTCATTCCACACTTTT
1 CTCATTCAACACATTT
43161053 CTC
1 CTC
43161056 TCTCTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.37, G:0.00, T:0.40
Consensus pattern (16 bp):
CTCATTCAACACATTT
Found at i:43165819 original size:38 final size:38
Alignment explanation
Indices: 43165764--43166304 Score: 322
Period size: 38 Copynumber: 14.4 Consensus size: 38
43165754 GAAATAGAAC
*
43165764 ACTGATTATACTGAATGCTTACTCAACGAGCGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * *
43165802 ACAGATTATATTCAATG----CT--A--ATCGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * * * *
43165832 ACTGATTATACTGAATGCTTAATCAACGAACGACACCC
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
** * * *
43165870 AAAGATTACATTGAATACTCACTCAACGAGCGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* *
43165908 AGTGATTATGCTGAATGCTCACTCAACGAGCGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * *
43165946 ACTGATTATACTGAATGTTCGA-TCAACGAGTGACATCC
1 ACTGATTATACTGAATGCTC-ACTCAACGAGCGATATCT
* * * *
43165984 GCTGATTATATTAAATACTCACTCAACGAGCGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * *
43166022 ATTGATTATACTAAATGCTCGCTCAACGAGTGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * *
43166060 ACTAATTATACTGAATGCTCGA-TCAAACGAGTGACACCT
1 ACTGATTATACTGAATGCTC-ACTC-AACGAGCGATATCT
* * * * ** * * *
43166099 ACTGATTATACTAAACGTTGCA-TAAAATAAG-AATACCC
1 ACTGATTATACTGAATGCT-CACT-CAACGAGCGATATCT
* * * * *
43166137 ATTGATTATACT-AACTGAAT-TCTGAAACGAGC-ATTATCC
1 ACTGATTATACTGAA-TG-CTCACT-CAACGAGCGA-TATCT
* * *
43166176 ACTGGTTATACTAAATACTCACTCAACGAGCGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * * *
43166214 ATTAATTATATTGAATGGTCACTCAACGAGTGATATCT
1 ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
* * * * *
43166252 ACTGATTATACTGAATGTTTGA-TCAAACGAGTGACACCT
1 ACTGATTATACTGAATG-CTCACTC-AACGAGCGATATCT
43166291 ACTGATTATACTGA
1 ACTGATTATACTGA
43166305 GCATTACATA
Statistics
Matches: 384, Mismatches: 95, Indels: 47
0.73 0.18 0.09
Matches are distributed among these distances:
30 23 0.06
32 1 0.00
34 3 0.01
36 1 0.00
37 3 0.01
38 269 0.70
39 81 0.21
40 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (38 bp):
ACTGATTATACTGAATGCTCACTCAACGAGCGATATCT
Found at i:43165828 original size:30 final size:31
Alignment explanation
Indices: 43165794--43165855 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
43165784 ACTCAACGAG
*
43165794 CGATATCTACAGATTATATTCAATGC-TAAT
1 CGATATCTACAGATTATACTCAATGCTTAAT
* *
43165824 CGATATCTACTGATTATACTGAATGCTTAAT
1 CGATATCTACAGATTATACTCAATGCTTAAT
43165855 C
1 C
43165856 AACGAACGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (31 bp):
CGATATCTACAGATTATACTCAATGCTTAAT
Found at i:43166028 original size:114 final size:113
Alignment explanation
Indices: 43165824--43166113 Score: 384
Period size: 114 Copynumber: 2.5 Consensus size: 113
43165814 CAATGCTAAT
* ** ** * *
43165824 CGATATCTACTGATTATACTGAATGCTT-AATCAACGAACGACACCCAAAGATTACATTGAATAC
1 CGATATCTACTGATTATACTGAATG-TTCGATCAACGAGTGACA-CCACTGATTATATTAAATAC
* *
43165888 TCACTCAACGAGCGATATCTAGTGATTATGCTGAATGCTCACTCAACGAG
64 TCACTCAACGAGCGATATCTAGTGATTATACTAAATGCTCACTCAACGAG
*
43165938 CGATATCTACTGATTATACTGAATGTTCGATCAACGAGTGACATCCGCTGATTATATTAAATACT
1 CGATATCTACTGATTATACTGAATGTTCGATCAACGAGTGACA-CCACTGATTATATTAAATACT
* *
43166003 CACTCAACGAGCGATATCTATTGATTATACTAAATGCTCGCTCAACGAG
65 CACTCAACGAGCGATATCTAGTGATTATACTAAATGCTCACTCAACGAG
* * * *
43166052 TGATATCTACTAATTATACTGAATGCTCGATCAAACGAGTGACACCTACTGATTATACTAAA
1 CGATATCTACTGATTATACTGAATGTTCGATC-AACGAGTGACACC-ACTGATTATATTAAA
43166114 CGTTGCATAA
Statistics
Matches: 155, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
113 2 0.01
114 129 0.83
115 24 0.15
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (113 bp):
CGATATCTACTGATTATACTGAATGTTCGATCAACGAGTGACACCACTGATTATATTAAATACTC
ACTCAACGAGCGATATCTAGTGATTATACTAAATGCTCACTCAACGAG
Found at i:43166212 original size:192 final size:192
Alignment explanation
Indices: 43165980--43166366 Score: 594
Period size: 192 Copynumber: 2.0 Consensus size: 192
43165970 AACGAGTGAC
* * * *
43165980 ATCCGCTGATTATATTAAATACTCACTCAACGAGCGATATCTATTGATTATACTAAATGCTCGCT
1 ATCCACTGATTATACTAAATACTCACTCAACGAGCGATATCTATTAATTATACTAAATGCTCACT
43166045 CAACGAGTGATATCTACTAATTATACTGAATGCTCGATCAAACGAGTGACACCTACTGATTATAC
66 CAACGAGTGATATCTACTAATTATACTGAATGCTCGATCAAACGAGTGACACCTACTGATTATAC
* * * *
43166110 TAAACGTTGCATAAAATAAGAATACCCATTGATTATACTAACTGAATTCTGAAACGAGCATT
131 TAAACATTACATAAAATAAGAATACCCATTGATTATACTAACTGAATGCTCAAACGAGCATT
* * * *
43166172 ATCCACTGGTTATACTAAATACTCACTCAACGAGCGATATCTATTAATTATATTGAATGGTCACT
1 ATCCACTGATTATACTAAATACTCACTCAACGAGCGATATCTATTAATTATACTAAATGCTCACT
* * *
43166237 CAACGAGTGATATCTACTGATTATACTGAATGTTTGATCAAACGAGTGACACCTACTGATTATAC
66 CAACGAGTGATATCTACTAATTATACTGAATGCTCGATCAAACGAGTGACACCTACTGATTATAC
* * * * *
43166302 TGAGCATTACATAAAATAAGAATACCCTTTGATTATACTAATTGAATGCTCAAACGAGCGTT
131 TAAACATTACATAAAATAAGAATACCCATTGATTATACTAACTGAATGCTCAAACGAGCATT
43166364 ATC
1 ATC
43166367 TGTAACACCC
Statistics
Matches: 175, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
192 175 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (192 bp):
ATCCACTGATTATACTAAATACTCACTCAACGAGCGATATCTATTAATTATACTAAATGCTCACT
CAACGAGTGATATCTACTAATTATACTGAATGCTCGATCAAACGAGTGACACCTACTGATTATAC
TAAACATTACATAAAATAAGAATACCCATTGATTATACTAACTGAATGCTCAAACGAGCATT
Found at i:43172188 original size:29 final size:29
Alignment explanation
Indices: 43172154--43172227 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
43172144 TAATCAACCA
* *
43172154 CGCACACTTAGTGCCATGTACTTTAAA-CT
1 CGCACACTTAGTGCCATGCA-TTTAAAGCC
*
43172183 CGCACAATTAGTGCCATGCATTTAAAGCC
1 CGCACACTTAGTGCCATGCATTTAAAGCC
43172212 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
43172228 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTAAAGCC
Found at i:43178869 original size:22 final size:22
Alignment explanation
Indices: 43178835--43178876 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
43178825 CTACAAGTTT
*
43178835 ACCCTAATTTACTACTATATAA
1 ACCCTAATGTACTACTATATAA
* *
43178857 ACCCTTATGTACTATTATAT
1 ACCCTAATGTACTACTATAT
43178877 TCCTCACACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.40
Consensus pattern (22 bp):
ACCCTAATGTACTACTATATAA
Found at i:43179095 original size:17 final size:17
Alignment explanation
Indices: 43179052--43179095 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
43179042 TATTGCCAGA
*
43179052 GTAACCTTGTCACCACT
1 GTAACCTCGTCACCACT
* **
43179069 GCAATTTCGTCACCACT
1 GTAACCTCGTCACCACT
43179086 GTAACCTCGT
1 GTAACCTCGT
43179096 TGCTACCATC
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.30
Consensus pattern (17 bp):
GTAACCTCGTCACCACT
Found at i:43182207 original size:27 final size:26
Alignment explanation
Indices: 43182123--43182207 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
43182113 TGGCTGCCAA
* *
43182123 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
* *
43182149 ATACAAATATTGTGGTAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
43182176 AAACAGATATTTGTGGCATAGCCACCCG
1 -AACAGATA-TTGTGGCAGAGCCACCAG
43182204 AACA
1 AACA
43182208 CTTCCTCCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 31 0.65
28 16 0.33
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:43189916 original size:27 final size:26
Alignment explanation
Indices: 43189878--43189992 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
43189868 ATTATGGTTG
* *
43189878 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
43189904 CTAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
*
43189931 CCAGAACAGATATTTGTGACATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
43189958 CCAGAAATAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGACAGAGCCA
43189986 CCAGAAC
1 CCAGAAC
43189993 TCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 11 0.14
27 40 0.53
28 25 0.33
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:43189987 original size:55 final size:53
Alignment explanation
Indices: 43189878--43189992 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 53
43189868 ATTATGGTTG
* * * *
43189878 CCAGAATAGATATTGTGACAGAGTCACTAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
* * *
43189931 CCAGAACAGATATTTGTGACATAGCCACCAGAAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATA-TTGTGGCAGAGCCA
43189986 CCAGAAC
1 CCAGAAC
43189993 TCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 11 0.21
54 22 0.42
55 20 0.38
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
Found at i:43192068 original size:13 final size:13
Alignment explanation
Indices: 43192050--43192074 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43192040 TAATGGTATA
43192050 TTGAATCCATGAT
1 TTGAATCCATGAT
43192063 TTGAATCCATGA
1 TTGAATCCATGA
43192075 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:43193979 original size:25 final size:25
Alignment explanation
Indices: 43193951--43194029 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
43193941 CTAATGGCCA
43193951 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
43193976 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
43193998 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
43194023 ATGTGAT
1 ATGTGAT
43194030 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:43193979 original size:47 final size:47
Alignment explanation
Indices: 43193926--43194079 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
43193916 ACAAGATATG
43193926 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
43193973 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
43194020 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
43194067 TATATGTGATAAG
1 TATATGTGATAAG
43194080 TCCCGAAGGA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 101 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:43202320 original size:38 final size:38
Alignment explanation
Indices: 43202265--43202596 Score: 259
Period size: 38 Copynumber: 8.0 Consensus size: 38
43202255 AATGAAAAAA
*
43202265 AACGTGGTGCTACGTGGATATACCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
43202303 AATGTGGTGCTAAGTGGATATACCACGATTGCACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACG---G------TT-ATACATGT
* *
43202351 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG--T
* * ** *
43202394 CATTGACGTTGTGCTAAGTGGATAGACCGTGGTTAAACATGT
1 -A---ACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* * *
43202436 AATGTGGTGCTAAGTGGGTATACCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* *
43202483 AACGTGGTGCTAAGTGGATATACCATGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
43202521 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
43202559 AACGTGGTGCTAAGTGCATATGCCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
43202597 TAATTTGAAA
Statistics
Matches: 237, Mismatches: 30, Indels: 54
0.74 0.09 0.17
Matches are distributed among these distances:
38 121 0.51
39 2 0.01
40 7 0.03
41 6 0.03
42 1 0.00
43 1 0.00
44 5 0.02
45 7 0.03
47 54 0.23
48 33 0.14
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:43202366 original size:48 final size:48
Alignment explanation
Indices: 43202295--43202551 Score: 225
Period size: 48 Copynumber: 5.8 Consensus size: 48
43202285 TACCACGGTT
* * * *
43202295 ATACATGTAATGTGGTGCTAAGTGGATATACCACGATTGCACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
*
43202343 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
* * * * **
43202391 ATTCAT-TGACGTTGTGCTAAGTGGATAGA-C-C-G-T-GGT-TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
* *
43202429 A-ACATGTAATGTGGTGCTAAGTGGGTATACCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
* *
43202476 ATTCAT-TAACGTGGTGCTAAGTGGATATACCATGG-----T-TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
43202514 A-ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTA
43202552 AACATGTAAC
Statistics
Matches: 168, Mismatches: 26, Indels: 37
0.73 0.11 0.16
Matches are distributed among these distances:
37 6 0.04
38 48 0.29
39 1 0.01
40 1 0.01
41 5 0.03
42 3 0.02
43 2 0.01
44 3 0.02
45 1 0.01
46 1 0.01
47 46 0.27
48 51 0.30
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
Found at i:43202448 original size:85 final size:85
Alignment explanation
Indices: 43202345--43202551 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
43202335 ACATATTGAT
* * *
43202345 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTGACGTTGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
43202410 AGTGGATAGACCGTGGTTAA
66 AGTGGATAGACCATGGTTAA
* *
43202430 ACATGTAATGTGGTGCTAAGTGGGTATACCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
43202495 AGTGGATATACCATGGTTAA
66 AGTGGATAGACCATGGTTAA
43202515 ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTA
43202552 AACATGTAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATAGACCATGGTTAA
Found at i:43208659 original size:38 final size:38
Alignment explanation
Indices: 43208608--43208936 Score: 226
Period size: 38 Copynumber: 7.9 Consensus size: 38
43208598 GAAAAAAAAT
* *
43208608 GTGGTGCTAAGTGGATATCCCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
43208646 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* * *
43208694 ATGGTGCTAAGTGGATATTCCACGGTTACATATACTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATAC--A-T--GTAAC
* *
43208741 GTGGTGCTAAGTGGATATACCATGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* * *
43208779 ATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * *
43208826 GTGATGCAAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* * *
43208864 GTAGTGCTAAGTGGATATACCACGATTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* * *
43208902 GTGGTGCTAAGTGCATATGCCACTGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
43208937 TAATTTGAAA
Statistics
Matches: 230, Mismatches: 33, Indels: 56
0.72 0.10 0.18
Matches are distributed among these distances:
38 118 0.51
40 5 0.02
41 3 0.01
42 4 0.02
43 5 0.02
44 3 0.01
45 4 0.02
46 1 0.00
47 55 0.24
48 32 0.14
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:43208768 original size:47 final size:47
Alignment explanation
Indices: 43208642--43208853 Score: 235
Period size: 47 Copynumber: 4.7 Consensus size: 47
43208632 GTTATACGTG
* * * *
43208642 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCAT
* *
43208689 GTAACATGGTGCTAAGTGGATATTCCACGGTTACATATACTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCAT
* *
43208737 TAACGTGGTGCTAAGTGGATATACCATGGTT--A-A-AC--A-T--G
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCAT
* * *
43208775 TAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCAT
* *
43208822 TAACGTGATGCAAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
43208854 AACATGTAAC
Statistics
Matches: 136, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
38 28 0.21
40 2 0.01
41 2 0.01
42 1 0.01
43 2 0.01
44 2 0.01
45 2 0.01
47 56 0.41
48 41 0.30
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCAT
Found at i:43208795 original size:85 final size:85
Alignment explanation
Indices: 43208685--43208887 Score: 334
Period size: 85 Copynumber: 2.4 Consensus size: 85
43208675 ACATATTGAT
* * *
43208685 ACATGTAACATGGTGCTAAGTGGATATTCCACGGTTACATATACTGATTCATTAACGTGGTGCTA
1 ACATGTAACATGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCATTAACGTGATGCAA
*
43208750 AGTGGATATACCATGGTTAA
66 AGTGGATATACCACGGTTAA
* *
43208770 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGATGCAA
1 ACATGTAACATGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCATTAACGTGATGCAA
43208835 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
* *
43208855 ACATGTAACGTAGTGCTAAGTGGATATACCACG
1 ACATGTAACATGGTGCTAAGTGGATATACCACG
43208888 ATTAAACATG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 110 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (85 bp):
ACATGTAACATGGTGCTAAGTGGATATACCACGGTTACATATACTGATTCATTAACGTGATGCAA
AGTGGATATACCACGGTTAA
Found at i:43211694 original size:17 final size:17
Alignment explanation
Indices: 43211672--43211704 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
43211662 ATTTGATTGC
43211672 CTAATTAAATTAATTCT
1 CTAATTAAATTAATTCT
*
43211689 CTAATTAATTTAATTC
1 CTAATTAAATTAATTC
43211705 ATGTGACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
CTAATTAAATTAATTCT
Found at i:43214528 original size:35 final size:35
Alignment explanation
Indices: 43214484--43214551 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
43214474 CCTACTCTAC
* * *
43214484 GTCCTCTTTCTCCTCTTCCTCTATGGTGTTTTTGA
1 GTCCCCTTTCTCCTCTTCCTCTAGGGTATTTTTGA
* *
43214519 GTCCCCTTTCTTCTCTTTCTCTAGGGTATTTTT
1 GTCCCCTTTCTCCTCTTCCTCTAGGGTATTTTT
43214552 ATAGGCTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.06, C:0.28, G:0.13, T:0.53
Consensus pattern (35 bp):
GTCCCCTTTCTCCTCTTCCTCTAGGGTATTTTTGA
Found at i:43214649 original size:13 final size:13
Alignment explanation
Indices: 43214624--43214675 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
43214614 GCTCGGTAGG
*
43214624 GACACGCCTGTGT
1 GACACGCCCGTGT
*
43214637 GACATGCCCGTGT
1 GACACGCCCGTGT
*
43214650 GACACGCCTGTGT
1 GACACGCCCGTGT
* *
43214663 GCCACGCCAGTGT
1 GACACGCCCGTGT
43214676 ACGATTACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:43214675 original size:26 final size:26
Alignment explanation
Indices: 43214624--43214675 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
43214614 GCTCGGTAGG
* *
43214624 GACACGCCTGTGTGACATGCCCGTGT
1 GACACGCCTGTGTGACACGCCAGTGT
*
43214650 GACACGCCTGTGTGCCACGCCAGTGT
1 GACACGCCTGTGTGACACGCCAGTGT
43214676 ACGATTACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (26 bp):
GACACGCCTGTGTGACACGCCAGTGT
Found at i:43233713 original size:27 final size:26
Alignment explanation
Indices: 43233673--43233784 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
43233663 AGCATGGCTG
* * *
43233673 CCAGAACAGGTAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
43233699 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
43233727 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
43233754 CCAGATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
43233781 CCAG
1 CCAG
43233785 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:43233774 original size:54 final size:54
Alignment explanation
Indices: 43233675--43233781 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
43233665 CATGGCTGCC
* * *
43233675 AGAACAGGTAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCACT
* * *
43233729 AGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTATGGCATAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCAC
43233782 CAGGACGCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCACT
Found at i:43233952 original size:28 final size:26
Alignment explanation
Indices: 43233890--43233952 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
43233880 AAAGTACCCC
** * *
43233890 TAGGGGTATAATGGTAATTTTGTACC
1 TAGGGGTATAACAGTAATTTTATACA
43233916 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ATACA
43233944 TAGGGGTAT
1 TAGGGGTAT
43233953 TTAAGTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTATACA
Found at i:43235552 original size:38 final size:38
Alignment explanation
Indices: 43235491--43235619 Score: 204
Period size: 38 Copynumber: 3.4 Consensus size: 38
43235481 GGACTTTAGG
43235491 CCGGATATATTTCCAGCACATAGCCTGCGGACCTCAAGT
1 CCGGATATA-TTCCAGCACATAGCCTGCGGACCTCAAGT
*
43235530 CCGGATATATTCCAGCACATAGCCTACGGACCTCAAGT
1 CCGGATATATTCCAGCACATAGCCTGCGGACCTCAAGT
* * *
43235568 CCGGATATGTTCCAGCACGTAGCCTGCGAACCTCAAGT
1 CCGGATATATTCCAGCACATAGCCTGCGGACCTCAAGT
*
43235606 CCGGATATGTTCCA
1 CCGGATATATTCCA
43235620 AATACCACGC
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
38 76 0.89
39 9 0.11
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (38 bp):
CCGGATATATTCCAGCACATAGCCTGCGGACCTCAAGT
Found at i:43243184 original size:40 final size:38
Alignment explanation
Indices: 43243139--43243293 Score: 134
Period size: 38 Copynumber: 4.0 Consensus size: 38
43243129 TCCAGTTACT
* * *
43243139 AGCACAAAGCCTACGGGACTT-TAGGCTCGGATATATTTCC
1 AGCACATAGCCTAC-GGACTTCAAGTCT-GGATATA-TTCC
* * *
43243179 AGCACATAGCCTGCGAACCTCAAGTCTGGATATATTCC
1 AGCACATAGCCTACGGACTTCAAGTCTGGATATATTCC
* * *
43243217 AGCACATAGCCTACGGACTTCAAGTAC-AGATATGTTCA
1 AGCACATAGCCTACGGACTTCAAGT-CTGGATATATTCC
* * * * *
43243255 AGAACCTAGCCTATGGACCTCAAGTCTGGATATGTTCC
1 AGCACATAGCCTACGGACTTCAAGTCTGGATATATTCC
43243293 A
1 A
43243294 AATACCATGC
Statistics
Matches: 94, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
37 1 0.01
38 65 0.69
39 12 0.13
40 16 0.17
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (38 bp):
AGCACATAGCCTACGGACTTCAAGTCTGGATATATTCC
Found at i:43243223 original size:38 final size:38
Alignment explanation
Indices: 43243167--43243293 Score: 139
Period size: 38 Copynumber: 3.3 Consensus size: 38
43243157 CTTTAGGCTC
* *
43243167 GGATATATTTCCAGCACATAGCCTGCGAACCTCAAGTCT
1 GGATATA-TTCCAGCACATAGCCTACGGACCTCAAGTCT
*
43243206 GGATATATTCCAGCACATAGCCTACGGACTTCAAGTAC-
1 GGATATATTCCAGCACATAGCCTACGGACCTCAAGT-CT
* * * * * *
43243244 AGATATGTTCAAGAACCTAGCCTATGGACCTCAAGTCT
1 GGATATATTCCAGCACATAGCCTACGGACCTCAAGTCT
*
43243282 GGATATGTTCCA
1 GGATATATTCCA
43243294 AATACCATGC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
37 1 0.01
38 65 0.88
39 8 0.11
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (38 bp):
GGATATATTCCAGCACATAGCCTACGGACCTCAAGTCT
Found at i:43243546 original size:37 final size:37
Alignment explanation
Indices: 43243496--43243569 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
43243486 TTCCAAAGAT
43243496 TTCAATTCACTTAATATACTATTATAAAAGCATCATC
1 TTCAATTCACTTAATATACTATTATAAAAGCATCATC
43243533 TTCAATTCACTTAATATACTATTATAAAAGCATCATC
1 TTCAATTCACTTAATATACTATTATAAAAGCATCATC
43243570 AATTTCATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (37 bp):
TTCAATTCACTTAATATACTATTATAAAAGCATCATC
Found at i:43248735 original size:41 final size:41
Alignment explanation
Indices: 43248682--43248833 Score: 150
Period size: 41 Copynumber: 3.7 Consensus size: 41
43248672 CTTAGCACCA
*
43248682 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-GACTACTG
1 GCTCAAAAGCCCTTCGAAACCAAGCTCGGATTATGAC-ACTG
* * *
43248723 GCTCGAAGGCCCTTCGAAACTAAG-TCCGG-TTATGACACTG
1 GCTCAAAAGCCCTTCGAAACCAAGCT-CGGATTATGACACTG
* ** *
43248763 GCTCTAAAAAGCCCTTCGAAACTAAAATC-GATTATTAGCACTG
1 GCTC--AAAAGCCCTTCGAAACCAAGCTCGGATTATGA-CACTG
*
43248806 GCTCAAAAGCCCTTCGAGACCAAGCTCG
1 GCTCAAAAGCCCTTCGAAACCAAGCTCG
43248834 AATTTAGACC
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
40 12 0.13
41 46 0.51
42 23 0.25
43 10 0.11
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (41 bp):
GCTCAAAAGCCCTTCGAAACCAAGCTCGGATTATGACACTG
Found at i:43255995 original size:28 final size:27
Alignment explanation
Indices: 43255963--43256049 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 27
43255953 GTGACAGAGT
43255963 CACCAGATACAGATATTTGTGGCAGTGC
1 CACCAGA-ACAGATATTTGTGGCAGTGC
* *
43255991 CACCAGAACAGATA--TATGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
43256016 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
43256044 CACCAG
1 CACCAG
43256050 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
25 22 0.43
26 1 0.02
27 7 0.14
28 21 0.41
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:43256202 original size:28 final size:28
Alignment explanation
Indices: 43256155--43256218 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
43256145 AAATTAACCC
*
43256155 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
43256183 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
43256211 TAGGGGTA
1 TAGGGGTA
43256219 CTCTAGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:43257515 original size:24 final size:24
Alignment explanation
Indices: 43257488--43257534 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
43257478 CTAGATTTCC
*
43257488 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
43257512 TCCCTTATCAGCTCCTAAATCCT
1 TCCCTTATCAGCTCCTAAATCCT
43257535 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:43263904 original size:28 final size:27
Alignment explanation
Indices: 43263818--43263907 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 27
43263808 GTGACAGAGT
* * *
43263818 CACCAGATACAGATATTTTGTAGTAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
43263847 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
43263874 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
43263902 CACCAG
1 CACCAG
43263908 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 21 0.42
28 22 0.44
29 7 0.14
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:43265347 original size:24 final size:24
Alignment explanation
Indices: 43265320--43265366 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
43265310 CTAGATTTCC
*
43265320 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
43265344 TCCCTTATCAGCTCCTAAATCCT
1 TCCCTTATCAGCTCCTAAATCCT
43265367 CTCGTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:43273000 original size:40 final size:40
Alignment explanation
Indices: 43272956--43273141 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
43272946 GACAATTTGA
* *
43272956 CTATGTATGGCACTTGGTGTGGGATTCAAGATAGCTTCGG
1 CTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCGG
43272996 CTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCGG
1 CTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCGG
* ** *
43273036 ATATGTATGGCACTTAGTGTATGATTCAAGATAGCTTTGG
1 CTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCGG
* * * * * * * *
43273076 CTATGTAAGGCACTTTGGGTACGATATTAAAATAACTTTGG
1 CTATGTATGGCACTTAGTGTGCGAT-TCAAGATAGCTTCGG
43273117 CTATGTATTGGCACTTAGTGTGCGA
1 CTATGTA-TGGCACTTAGTGTGCGA
43273142 GAATTCGAGT
Statistics
Matches: 126, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
40 94 0.75
41 19 0.15
42 13 0.10
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (40 bp):
CTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCGG
Found at i:43287336 original size:30 final size:30
Alignment explanation
Indices: 43287300--43287367 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
43287290 CAGTTAATCC
43287300 ACACGCCCGTGTTAGACACACGAGCAGGCT
1 ACACGCCCGTGTTAGACACACGAGCAGGCT
* * *
43287330 ACACGCCTGTGTTAGACACATGGGCAGGCT
1 ACACGCCCGTGTTAGACACACGAGCAGGCT
*
43287360 ATACGCCC
1 ACACGCCC
43287368 AATTGTCATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.16
Consensus pattern (30 bp):
ACACGCCCGTGTTAGACACACGAGCAGGCT
Found at i:43289372 original size:43 final size:43
Alignment explanation
Indices: 43289269--43289410 Score: 132
Period size: 44 Copynumber: 3.3 Consensus size: 43
43289259 CGTCCCAGAC
43289269 GTGGTCTTACACGT-AATCAAATATCGATGCC-AC-TGTCCAAGAT
1 GTGGTCTTACACGTAAATCAAATA-CGATGCCAACAT-T-CAAGAT
** * * *
43289312 AAGGTCTTACAC-AAAATCAAATACGATACCAACATTCTAGAT
1 GTGGTCTTACACGTAAATCAAATACGATGCCAACATTCAAGAT
* * *
43289354 GTGGTCTTACACGTAAATCATAAGT-CGATGCCAACATCCCAGAC
1 GTGGTCTTACACGTAAATCA-AA-TACGATGCCAACATTCAAGAT
43289398 GTGGTCTTACACG
1 GTGGTCTTACACG
43289411 ACAACTCATA
Statistics
Matches: 81, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
42 21 0.26
43 28 0.35
44 31 0.38
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
GTGGTCTTACACGTAAATCAAATACGATGCCAACATTCAAGAT
Found at i:43295455 original size:82 final size:81
Alignment explanation
Indices: 43295339--43295494 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
43295329 AAATTGTACA
* * * *
43295339 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
43295403 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43295420 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
43295485 TGCGAGTTGA
65 TGCGAATTGA
43295495 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43295462 original size:55 final size:52
Alignment explanation
Indices: 43295338--43295491 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
43295328 TAAATTGTAC
* *
43295338 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
43295391 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
43295446 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
43295492 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:43295496 original size:27 final size:27
Alignment explanation
Indices: 43295339--43295494 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
43295329 AAATTGTACA
*
43295339 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
43295366 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
43295393 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
43295420 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
43295448 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
43295475 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
43295495 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:43295505 original size:27 final size:27
Alignment explanation
Indices: 43295331--43295515 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
43295321 GCGGGATTAA
*
43295331 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
43295358 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
43295385 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
43295412 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
43295440 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
43295467 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
43295494 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
43295516 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:43295506 original size:82 final size:81
Alignment explanation
Indices: 43295331--43295515 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
43295321 GCGGGATTAA
* * * *
43295331 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
43295396 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
43295412 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
43295476 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
43295494 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
43295516 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:43303363 original size:82 final size:81
Alignment explanation
Indices: 43303247--43303402 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
43303237 AAATTGTACA
* * * *
43303247 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
43303311 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43303328 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
43303393 TGCGAGTTGA
65 TGCGAATTGA
43303403 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43303370 original size:55 final size:52
Alignment explanation
Indices: 43303246--43303399 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
43303236 TAAATTGTAC
* *
43303246 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
43303299 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
43303354 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
43303400 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:43303404 original size:27 final size:27
Alignment explanation
Indices: 43303247--43303402 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
43303237 AAATTGTACA
*
43303247 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
43303274 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
43303301 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
43303328 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
43303356 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
43303383 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
43303403 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:43303413 original size:27 final size:27
Alignment explanation
Indices: 43303239--43303423 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
43303229 GCGGGATTAA
*
43303239 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
43303266 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
43303293 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
43303320 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
43303348 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
43303375 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
43303402 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
43303424 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Done.