Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 138 of 332
Found at i:45177827 original size:35 final size:34
Alignment explanation
Indices: 45177787--45177963 Score: 212
Period size: 35 Copynumber: 5.1 Consensus size: 34
45177777 AAAAACATCA
*
45177787 AATGCTCACAAGAGCTAGTCCAACCATAACACACC
1 AATGCTCATAAGAGCTAGTCCAACCA-AACACACC
* * *
45177822 AATGCTCATAAGATCTAGTCCAACTGAAACACGCC
1 AATGCTCATAAGAGCTAGTCCAAC-CAAACACACC
*
45177857 AATGTTCATAAGAGCTAGTCCAACCAAA-ACACGAC
1 AATGCTCATAAGAGCTAGTCCAACCAAACACAC--C
* *
45177892 AATGCCCATAAGAGCTAGTCCAACCGAAACACGCC
1 AATGCTCATAAGAGCTAGTCCAACC-AAACACACC
**
45177927 AATGCTTGTAAGAGCTAGTCCAACCGAAACACACC
1 AATGCTCATAAGAGCTAGTCCAACC-AAACACACC
45177962 AA
1 AA
45177964 ACAAAGAGTA
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
33 3 0.02
34 3 0.02
35 109 0.89
36 4 0.03
37 3 0.02
ACGTcount: A:0.40, C:0.30, G:0.15, T:0.16
Consensus pattern (34 bp):
AATGCTCATAAGAGCTAGTCCAACCAAACACACC
Found at i:45177888 original size:70 final size:70
Alignment explanation
Indices: 45177787--45177963 Score: 250
Period size: 70 Copynumber: 2.5 Consensus size: 70
45177777 AAAAACATCA
* * * * * *
45177787 AATGCTCACAAGAGCTAGTCCAACCATAACACACCAATGCTCATAAGATCTAGTCCAACTGAAAC
1 AATGTTCATAAGAGCTAGTCCAACCAAAACACACCAATGCCCATAAGAGCTAGTCCAACCGAAAC
45177852 ACGCC
66 ACGCC
45177857 AATGTTCATAAGAGCTAGTCCAACCAAAACACGA-CAATGCCCATAAGAGCTAGTCCAACCGAAA
1 AATGTTCATAAGAGCTAGTCCAACCAAAACAC-ACCAATGCCCATAAGAGCTAGTCCAACCGAAA
45177921 CACGCC
65 CACGCC
* *
45177927 AATGCTT-GTAAGAGCTAGTCCAACCGAAACACACCAA
1 AATG-TTCATAAGAGCTAGTCCAACCAAAACACACCAA
45177964 ACAAAGAGTA
Statistics
Matches: 96, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
69 1 0.01
70 92 0.96
71 3 0.03
ACGTcount: A:0.40, C:0.30, G:0.15, T:0.16
Consensus pattern (70 bp):
AATGTTCATAAGAGCTAGTCCAACCAAAACACACCAATGCCCATAAGAGCTAGTCCAACCGAAAC
ACGCC
Found at i:45179764 original size:16 final size:15
Alignment explanation
Indices: 45179743--45179772 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45179733 AAAATGTAAG
45179743 TTAATATAACATGTTA
1 TTAATATAA-ATGTTA
45179759 TTAATATAAATGTT
1 TTAATATAAATGTT
45179773 TTTTTCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (15 bp):
TTAATATAAATGTTA
Found at i:45183932 original size:36 final size:36
Alignment explanation
Indices: 45183883--45183956 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
45183873 GCCCTCATAC
45183883 CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
1 CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
* *
45183919 CATCATGGGTTCACGAGTAGCAAGCTCTATTCGTGA
1 CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
45183955 CA
1 CA
45183957 AATGCCCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (36 bp):
CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
Found at i:45185914 original size:21 final size:21
Alignment explanation
Indices: 45185879--45185921 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
45185869 TGTTGTAAAT
*
45185879 TGAAAGTTTTTGATAGA-AAG
1 TGAAAGTTATTGATAGATAAG
45185899 TGAAAGATTATTGATAGATAAG
1 TGAAAG-TTATTGATAGATAAG
45185921 T
1 T
45185922 CACTTTTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (21 bp):
TGAAAGTTATTGATAGATAAG
Found at i:45186640 original size:33 final size:33
Alignment explanation
Indices: 45186603--45186813 Score: 176
Period size: 33 Copynumber: 6.5 Consensus size: 33
45186593 TACCCAAATG
* ** *
45186603 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
*
45186636 GTA-CACTTGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
* *
45186668 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTACACTTTGTGT
* * *
45186701 ATACCACTTGAAAAGGAAAGGTACACTATATGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
** * * *
45186734 GTA-CACTTGAAAAGGTTATGTGCACTTTGAGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
** ** ** * * *
45186766 GTAAAAAATGAAAAGGGTATGTACACTTCGCGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
45186799 GTACCACTTGAAAAG
1 GTACCACTTGAAAAG
45186814 AGAATATACA
Statistics
Matches: 146, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
32 52 0.36
33 93 0.64
34 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (33 bp):
GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
Found at i:45189045 original size:17 final size:17
Alignment explanation
Indices: 45189025--45189062 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
45189015 AAAGAAAGTG
45189025 AAGAGCTAAGTAAAGAA
1 AAGAGCTAAGTAAAGAA
45189042 AAGAGCTAAGTAAAGAA
1 AAGAGCTAAGTAAAGAA
45189059 AAGA
1 AAGA
45189063 AGAAGGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.61, C:0.05, G:0.24, T:0.11
Consensus pattern (17 bp):
AAGAGCTAAGTAAAGAA
Found at i:45194278 original size:33 final size:33
Alignment explanation
Indices: 45194241--45194518 Score: 244
Period size: 33 Copynumber: 8.5 Consensus size: 33
45194231 TACCCAAATG
* ** *
45194241 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
*
45194274 GTA-CACTTGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
* * *
45194306 ATACCA-TATGAAAAGGAAGGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTACACTTTGTGT
* *
45194339 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTACACTTTGTGT
* *
45194372 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTACACTTTGTGT
* * * *
45194405 ATACCACTTGAAAGGGAAAGGTACACTATATGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
** * * *
45194438 GTA-CACTTGAAAAGGTTATGTGCACTTTGAGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
* * * * *
45194470 GTACAAATTGAAAA-GAGTATGTACACTTCGTGT
1 GTACCACTTGAAAAGGA-AAGGTACACTTTGTGT
45194503 GTACCACTTGAAAAGG
1 GTACCACTTGAAAAGG
45194519 GAATGTGCAC
Statistics
Matches: 210, Mismatches: 29, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
32 52 0.25
33 156 0.74
34 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.30
Consensus pattern (33 bp):
GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
Found at i:45194363 original size:66 final size:66
Alignment explanation
Indices: 45194265--45194427 Score: 276
Period size: 66 Copynumber: 2.5 Consensus size: 66
45194255 GGTTATGTAC
* *
45194265 ACTTTGTGTGTA-CACTTGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAGGGTA
1 ACTTTGTGTATACCACTTGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
45194329 T
66 T
45194330 ACTTTGTGTATACCA-TATGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGT
1 ACTTTGTGTATACCACT-TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGT
45194394 AT
65 AT
*
45194396 ACTTTGTGTATACCACTTGAAAGGGAAAGGTA
1 ACTTTGTGTATACCACTTGAAAAGGAAAGGTA
45194428 CACTATATGT
Statistics
Matches: 92, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
65 12 0.13
66 79 0.86
67 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (66 bp):
ACTTTGTGTATACCACTTGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
T
Found at i:45194538 original size:33 final size:33
Alignment explanation
Indices: 45194436--45194548 Score: 129
Period size: 33 Copynumber: 3.5 Consensus size: 33
45194426 TACACTATAT
* *
45194436 GTGTAC-ACTTGAAAAGGTTATGTGCACTTTGA
1 GTGTACAACTTGAAAAGGGTATGTGCACTTCGA
* * * *
45194468 GTGTACAAATTGAAAAGAGTATGTACACTTCGT
1 GTGTACAACTTGAAAAGGGTATGTGCACTTCGA
* * *
45194501 GTGTACCACTTGAAAAGGGAATGTGCACCTCGA
1 GTGTACAACTTGAAAAGGGTATGTGCACTTCGA
*
45194534 GTGTACAACTAGAAA
1 GTGTACAACTTGAAA
45194549 CGGAAAAGTC
Statistics
Matches: 65, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
32 6 0.09
33 59 0.91
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (33 bp):
GTGTACAACTTGAAAAGGGTATGTGCACTTCGA
Found at i:45203375 original size:44 final size:42
Alignment explanation
Indices: 45203303--45203462 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
45203293 ATATGTGTTA
* * * * *
45203303 TCGTGTAAGACCACGTCTAGGACGTTGGCATCGATTTGTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATT
*
45203346 TACGTGTAAGACCATGTCCGGGACATTGGCATCATATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATT
* * * * *
45203389 TCGTGTAAGACCCTGTCTGGGATAGTGGCATTGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCA-TCATATATGATT
* * * * * *
45203432 GCATGTAAGAACACGTCTAGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
45203463 TCTACGAGCT
Statistics
Matches: 94, Mismatches: 21, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
42 26 0.28
43 41 0.44
44 27 0.29
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATT
Found at i:45208874 original size:94 final size:95
Alignment explanation
Indices: 45208707--45208880 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 95
45208697 TGATATGTGT
* * * *
45208707 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGAGATGCAAGCCAGTGTAAGACATGC
1 GCTAGTGTAAGACATGTCTGGCACATGCATCGGCATCGAGAGATACAAGCCAGTGTAAGACATGC
**
45208772 CTGGGACAT-GCATCGGCATTGAGACAAGA
66 CTAAGACATGGCATCGGCATTGAGACAAGA
* * * * *
45208801 GCTAGTGTAAGACATGTCTGGCACATGCATCGGCATTGAGATATACAAGCTAGTGTAAGACTTGT
1 GCTAGTGTAAGACATGTCTGGCACATGCATCGGCATCGAGAGATACAAGCCAGTGTAAGACATGC
45208866 CTAAGACATGGCATC
66 CTAAGACATGGCATC
45208881 AGCTTATTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
94 63 0.93
95 5 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGCACATGCATCGGCATCGAGAGATACAAGCCAGTGTAAGACATGC
CTAAGACATGGCATCGGCATTGAGACAAGA
Found at i:45208875 original size:48 final size:48
Alignment explanation
Indices: 45208707--45208867 Score: 209
Period size: 48 Copynumber: 3.4 Consensus size: 48
45208697 TGATATGTGT
* * * * *
45208707 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGAGATGCAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAA
* * *
45208755 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCATTGAGACA-A-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAA
* *
45208801 GCTAGTGTAAGACATGTCTGGCACATGCATCGGCATTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAA
*
45208849 GCTAGTGTAAGACTTGTCT
1 GCTAGTGTAAGACATGTCT
45208868 AAGACATGGC
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
46 40 0.41
47 1 0.01
48 56 0.58
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAA
Found at i:45209000 original size:49 final size:49
Alignment explanation
Indices: 45208895--45209005 Score: 125
Period size: 49 Copynumber: 2.3 Consensus size: 49
45208885 TATTGTGTGT
* * *
45208895 CAGTGTAAGACCTATTTGGGACATGGCATCGACACCAATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGAACATGGCATCGACACCAATAGATGAAAGC
* * * * *
45208944 CAATGTAAGACCTATCTGTAACATGGCATCGAC-CTCATTATATGAAAGT
1 CAGTGTAAGACCTATCTGGAACATGGCATCGACAC-CAATAGATGAAAGC
*
45208993 TAGTGTAAGACCT
1 CAGTGTAAGACCT
45209006 GGCTGGGACA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 1 0.02
49 50 0.98
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGAACATGGCATCGACACCAATAGATGAAAGC
Found at i:45223598 original size:79 final size:82
Alignment explanation
Indices: 45223487--45223671 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
45223477 GCTACTCGTT
* *
45223487 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
45223550 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
45223567 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
45223630 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
45223647 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45223672 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:45223671 original size:40 final size:40
Alignment explanation
Indices: 45223468--45223671 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
45223458 CGGAATTTAA
** *
45223468 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45223508 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
45223548 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45223587 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
45223627 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45223667 CCGGA
1 CCGGA
45223672 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45235958 original size:39 final size:39
Alignment explanation
Indices: 45235904--45235999 Score: 156
Period size: 39 Copynumber: 2.5 Consensus size: 39
45235894 TGGTGAGCTT
45235904 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
1 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
*
45235943 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTT
1 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
* * *
45235982 CAGCTAGACTTTGGGCTT
1 CAGTTAGCCTTCGGGCTT
45236000 TAGATCCCGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.14, C:0.26, G:0.24, T:0.36
Consensus pattern (39 bp):
CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
Found at i:45243475 original size:46 final size:45
Alignment explanation
Indices: 45243425--45243596 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
45243415 TGGTTGAGCA
45243425 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
45243471 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
45243517 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
45243563 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45243597 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45243579 original size:92 final size:92
Alignment explanation
Indices: 45243422--45243591 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
45243412 GGATGGTTGA
* *
45243422 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45243487 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
45243514 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45243579 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45243592 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:45248391 original size:227 final size:228
Alignment explanation
Indices: 45247983--45248392 Score: 678
Period size: 227 Copynumber: 1.8 Consensus size: 228
45247973 AATATTGCAT
* *
45247983 TGATTTACTGATTTTATCTGAGTTTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
1 TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
* * * *
45248048 AGGTCTTATGTAGCCTTTTTTTCCATGAAAATTGAACTTCCTTAGAAGTAGAGATGCAAAAAGGT
66 AAGTCTTATGTAGCCTTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACAAAAAGGT
* *
45248113 TTTGTTGGGAAATGTGTCTATATTCTACTAAACATGTAATTGTTTTCTATTTACATAATCAGAAA
131 TTTGTTGGGAAATGTGTCCATATTATACTAAACATGTAATTGTTTTCTATTTACATAATCAGAAA
45248178 ATTTTTGTTCATAAGGTAGCTCAAATGCAATTA
196 ATTTTTGTTCATAAGGTAGCTCAAATGCAATTA
*
45248211 TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAGTTATGGAATGCTTGTATGTTCTT
1 TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
* **
45248276 AAGTCTTATGTATCC-TTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACATGAAGGT
66 AAGTCTTATGTAGCCTTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACAAAAAGGT
* * *
45248340 TTTGTTGGGAAATGTGTCCGTATTATAGTGAACATGTAATTGTTTTCTATTTA
131 TTTGTTGGGAAATGTGTCCATATTATACTAAACATGTAATTGTTTTCTATTTA
45248393 TTTGAACGAT
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
227 92 0.55
228 75 0.45
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.44
Consensus pattern (228 bp):
TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
AAGTCTTATGTAGCCTTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACAAAAAGGT
TTTGTTGGGAAATGTGTCCATATTATACTAAACATGTAATTGTTTTCTATTTACATAATCAGAAA
ATTTTTGTTCATAAGGTAGCTCAAATGCAATTA
Found at i:45248462 original size:16 final size:16
Alignment explanation
Indices: 45248441--45248471 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45248431 TTCACTATTG
*
45248441 TGTCTTTTTTATTTTC
1 TGTCTTTTATATTTTC
45248457 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
45248472 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:45252238 original size:13 final size:13
Alignment explanation
Indices: 45252197--45252244 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
45252187 ATAATGAGTC
45252197 ATTATTTATCAAT
1 ATTATTTATCAAT
* *
45252210 ATGTTTTTGGTCAAT
1 AT-TATTT-ATCAAT
45252225 ATTATTTATCAAT
1 ATTATTTATCAAT
45252238 AATTATT
1 -ATTATT
45252245 GACTTGAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 7 0.25
14 14 0.50
15 7 0.25
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.54
Consensus pattern (13 bp):
ATTATTTATCAAT
Found at i:45253104 original size:21 final size:21
Alignment explanation
Indices: 45253080--45253119 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
45253070 TATTAAAGAT
45253080 TTAAATAACTTTTTT-TAATAA
1 TTAAATAA-TTTTTTATAATAA
*
45253101 TTAAATGATTTTTTATAAT
1 TTAAATAATTTTTTATAAT
45253120 TTTTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
TTAAATAATTTTTTATAATAA
Found at i:45253767 original size:24 final size:24
Alignment explanation
Indices: 45253740--45253791 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45253730 TTAGTAAGTC
*
45253740 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
45253764 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45253788 AAAT
1 AAAT
45253792 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45255732 original size:24 final size:24
Alignment explanation
Indices: 45255705--45255756 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45255695 TTAGTAAGTC
*
45255705 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
45255729 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45255753 AAAT
1 AAAT
45255757 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45259671 original size:31 final size:32
Alignment explanation
Indices: 45259633--45259699 Score: 127
Period size: 31 Copynumber: 2.1 Consensus size: 32
45259623 AGCATACTTC
45259633 AAATTTAACGAAAGATATATGATATAATTAA-
1 AAATTTAACGAAAGATATATGATATAATTAAT
45259664 AAATTTAACGAAAGATATATGATATAATTAAT
1 AAATTTAACGAAAGATATATGATATAATTAAT
45259696 AAAT
1 AAAT
45259700 AAAGTATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (32 bp):
AAATTTAACGAAAGATATATGATATAATTAAT
Found at i:45260351 original size:14 final size:14
Alignment explanation
Indices: 45260332--45260374 Score: 79
Period size: 14 Copynumber: 3.1 Consensus size: 14
45260322 TGATGAATTG
45260332 AATTAAACAATTAT
1 AATTAAACAATTAT
45260346 AATTAAACAATTAT
1 AATTAAACAATTAT
45260360 AATTAAAC-ATTAT
1 AATTAAACAATTAT
45260373 AA
1 AA
45260375 ATATTTAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 7 0.24
14 22 0.76
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:45260514 original size:10 final size:9
Alignment explanation
Indices: 45260482--45260516 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
45260472 AAATTTTAAA
45260482 TATTTTTTT
1 TATTTTTTT
*
45260491 TATTATTTT
1 TATTTTTTT
45260500 TATTTTATTT
1 TATTTT-TTT
45260510 TATTTTT
1 TATTTTT
45260517 ATAAAGAACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TATTTTTTT
Found at i:45261494 original size:48 final size:48
Alignment explanation
Indices: 45261436--45261781 Score: 557
Period size: 48 Copynumber: 7.2 Consensus size: 48
45261426 ATATACACAC
* *
45261436 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
45261484 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
45261534 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
45261582 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
45261630 ATCTCATATATTTTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
45261678 ATATCATACTTATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
45261726 ATCTCACACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
45261774 ATCTCATA
1 ATCTCATA
45261782 TATTTTTATC
Statistics
Matches: 277, Mismatches: 19, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
48 230 0.83
50 47 0.17
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:45265552 original size:9 final size:9
Alignment explanation
Indices: 45265540--45265630 Score: 62
Period size: 9 Copynumber: 9.9 Consensus size: 9
45265530 ATTATTTATC
45265540 TTATGTAAA
1 TTATGTAAA
45265549 TTATGTAAGA
1 TTATGTAA-A
*
45265559 TATGATACGTCA-
1 T-T-AT--GTAAA
45265571 TTATGT-A-
1 TTATGTAAA
*
45265578 TTATGTAAG
1 TTATGTAAA
45265587 TTATGTAAA
1 TTATGTAAA
*
45265596 TTATGTAAG
1 TTATGTAAA
* **
45265605 TTATTTATC
1 TTATGTAAA
45265614 TTATGTAAA
1 TTATGTAAA
45265623 TTATGTAA
1 TTATGTAA
45265631 GATATGATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
7 7 0.11
8 3 0.05
9 44 0.67
10 4 0.06
11 2 0.03
12 3 0.05
14 3 0.05
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.46
Consensus pattern (9 bp):
TTATGTAAA
Found at i:45265859 original size:14 final size:14
Alignment explanation
Indices: 45265828--45265870 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
45265818 TTTTTCGTGA
45265828 TTAAAATAAAA-A-
1 TTAAAATAAAATAT
45265840 -TAAAATAAAATAT
1 TTAAAATAAAATAT
45265853 TTAAAATAAAAT-T
1 TTAAAATAAAATAT
45265866 TTAAA
1 TTAAA
45265871 TACAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.36
12 1 0.04
13 6 0.21
14 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:45265877 original size:12 final size:12
Alignment explanation
Indices: 45265828--45265880 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
45265818 TTTTTCGTGA
45265828 TTAAAATAAAA-
1 TTAAAATAAAAT
*
45265839 ATAAAATAAAATAT
1 TTAAAAT-AAA-AT
45265853 TTAAAATAAAAT
1 TTAAAATAAAAT
* *
45265865 TTTAAATACAAT
1 TTAAAATAAAAT
45265877 TTAA
1 TTAA
45265881 TTTAATTAGG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 6 0.18
12 18 0.53
13 4 0.12
14 6 0.18
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (12 bp):
TTAAAATAAAAT
Found at i:45265906 original size:48 final size:48
Alignment explanation
Indices: 45265854--45266007 Score: 138
Period size: 48 Copynumber: 3.2 Consensus size: 48
45265844 ATAAAATATT
*
45265854 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAA
1 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAA
* ** * ** *
45265902 TAAAATAAAAGTAGACAA-A-ATATTT--TTCCTGATTAAAATAAAAT-AAAA
1 TAAAATAAAATTTTA-AATACA-ATTTAATT--TAATT-AGGTAAATTAAAAA
* *
45265950 TAAAATAAAATTTTTAATACAATTTAATTTAATTAGGTAAATTAAAAT
1 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAA
45265998 TAAAATAAAA
1 TAAAATAAAA
45266008 GTAGACAAAA
Statistics
Matches: 79, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
46 2 0.03
47 9 0.11
48 58 0.73
49 8 0.10
50 2 0.03
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (48 bp):
TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAA
Found at i:45265945 original size:5 final size:5
Alignment explanation
Indices: 45265935--45265960 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
45265925 TTTTCCTGAT
45265935 TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA T
45265961 TTTTAATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:45265978 original size:96 final size:96
Alignment explanation
Indices: 45265840--45266048 Score: 339
Period size: 96 Copynumber: 2.2 Consensus size: 96
45265830 AAAATAAAAA
** *
45265840 TAAAATAAAAT-ATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAATA
*
45265904 AAATAAAAGTAGACAAAATATTTTTCCTGAT
66 AAATAAAAGTAGACAAAATATTTATCCTGAT
* *
45265935 TAAAATAAAATAAAATAAAATAAAATTTTTAATACAATTTAATTTAATTAGGTAAATTAAAATTA
1 TAAAATAAAATAAAATAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAATA
*
45266000 AAATAAAAGTAGACAAAATATTTATCGTGAT
66 AAATAAAAGTAGACAAAATATTTATCCTGAT
*
45266031 TAAATTAAAATAAAATAA
1 TAAAATAAAATAAAATAA
45266049 TATCTTCAAA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
95 11 0.10
96 94 0.90
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.35
Consensus pattern (96 bp):
TAAAATAAAATAAAATAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAATA
AAATAAAAGTAGACAAAATATTTATCCTGAT
Found at i:45266023 original size:48 final size:47
Alignment explanation
Indices: 45265875--45266023 Score: 126
Period size: 48 Copynumber: 3.1 Consensus size: 47
45265865 TTTAAATACA
*
45265875 ATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAT
1 ATTTAATTTAATTAGGTAAATT-AAAATAAAATAAAAGTAGACAAAAT
* ** * * ** *
45265923 ATTT--TTCCTGATTAAAATAAAATAAAATAAAATAAAATTTTTA-ATACA-
1 ATTTAATT--TAATT-AGGTAAATTAAAATAAAATAAAA-GTAGACA-AAAT
45265971 ATTTAATTTAATTAGGTAAATTAAAATTAAAATAAAAGTAGACAAAAT
1 ATTTAATTTAATTAGGTAAATTAAAA-TAAAATAAAAGTAGACAAAAT
45266019 ATTTA
1 ATTTA
45266024 TCGTGATTAA
Statistics
Matches: 74, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
46 2 0.03
47 14 0.19
48 47 0.64
49 9 0.12
50 2 0.03
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (47 bp):
ATTTAATTTAATTAGGTAAATTAAAATAAAATAAAAGTAGACAAAAT
Found at i:45269976 original size:206 final size:212
Alignment explanation
Indices: 45269690--45270112 Score: 687
Period size: 206 Copynumber: 2.0 Consensus size: 212
45269680 AAATATGCTT
*
45269690 TTCCTTTGAACCCAAAAATTATCGAGGAGATGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
*
45269755 GGAAAAAGTGGTTTTTTTCAGATGTCGAATTGGGGAA-TTT-T-AG-AGATGAGC-AAATGAGAA
66 GGAAAAAGGGGTTTTTTTCAGATGTCGAATTGGGGAATTTTATGAGCAGATGAGCAAAATGAGAA
*
45269815 GAGAAGAACTTACAGGTGAATTTTAGAGATTTCAAACTGGGGAAGAAAGGG-TTTTTTTCGGATG
131 GAGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTTCGGATG
45269879 TCAAATTGGGGAAAAAC
196 TCAAATTGGGGAAAAAC
*
45269896 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGTAGAGAAGAACTTACAGGTGTAAACGAAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
* *
45269961 GGCAAAAGGGGTTTTTTTCGGATGTCGAATTGGGGAATTTTAGAGATGAGCAGATGAGCAGAAAT
66 GGAAAAAGGGGTTTTTTTCAGATGTCGAATTGGGGAATTTT----ATGAGCAGATGAGCA-AAAT
* *
45270026 GAGCAGAGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAGGGGTTTTTTTTC
126 GAGAAGAGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTTC
45270091 GGATGTCAAATTGGGGAAAAAC
191 GGATGTCAAATTGGGGAAAAAC
45270113 AAGTGATAAT
Statistics
Matches: 198, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
206 97 0.49
207 3 0.02
212 1 0.01
213 2 0.01
214 8 0.04
216 57 0.29
217 30 0.15
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (212 bp):
TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
GGAAAAAGGGGTTTTTTTCAGATGTCGAATTGGGGAATTTTATGAGCAGATGAGCAAAATGAGAA
GAGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTTCGGATG
TCAAATTGGGGAAAAAC
Found at i:45270923 original size:23 final size:23
Alignment explanation
Indices: 45270857--45270926 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 23
45270847 CATTAATTAT
45270857 CCTAAA-CCCTAAACCCATAACC
1 CCTAAATCCCTAAACCCATAACC
* *** * ** *
45270879 CATGTCTCCTTAATGCCTTAACC
1 CCTAAATCCCTAAACCCATAACC
45270902 CCTAAATCCCTAAACCCATAACC
1 CCTAAATCCCTAAACCCATAACC
45270925 CC
1 CC
45270927 CAACTCATAG
Statistics
Matches: 31, Mismatches: 16, Indels: 1
0.65 0.33 0.02
Matches are distributed among these distances:
22 2 0.06
23 29 0.94
ACGTcount: A:0.33, C:0.43, G:0.03, T:0.21
Consensus pattern (23 bp):
CCTAAATCCCTAAACCCATAACC
Found at i:45271023 original size:15 final size:14
Alignment explanation
Indices: 45270987--45271025 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
45270977 TGTACCCTTA
*
45270987 ACCCTTAACCCTTG
1 ACCCTTAACCCTAG
45271001 ACCCTTAACTCCTAG
1 ACCCTTAAC-CCTAG
*
45271016 ACCTTTAACC
1 ACCCTTAACC
45271026 TTTAACCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.26, C:0.41, G:0.05, T:0.28
Consensus pattern (14 bp):
ACCCTTAACCCTAG
Found at i:45271063 original size:8 final size:7
Alignment explanation
Indices: 45270980--45271033 Score: 56
Period size: 7 Copynumber: 7.6 Consensus size: 7
45270970 TAAATCATGT
45270980 ACCCTTA
1 ACCCTTA
45270987 ACCCTTA
1 ACCCTTA
*
45270994 ACCCTTG
1 ACCCTTA
45271001 ACCCTTA
1 ACCCTTA
45271008 ACTCC-TA
1 AC-CCTTA
*
45271015 GACCTTTA
1 -ACCCTTA
*
45271023 ACCTTTA
1 ACCCTTA
45271030 ACCC
1 ACCC
45271034 CATAAATCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
7 34 0.85
8 6 0.15
ACGTcount: A:0.26, C:0.41, G:0.04, T:0.30
Consensus pattern (7 bp):
ACCCTTA
Found at i:45271067 original size:29 final size:28
Alignment explanation
Indices: 45270989--45271070 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 28
45270979 TACCCTTAAC
* * * *
45270989 CCTTAACCCTTGACCCTTAACTCCTAGA
1 CCTTAACCCTTGAACCATAAATCCTAAA
*
45271017 CCTTTAA-CCTTTAACCCCATAAATCTCTAAA
1 CC-TTAACCCTTGAA--CCATAAATC-CTAAA
45271048 CCTTAACCCTTGAACCATAAATC
1 CCTTAACCCTTGAACCATAAATC
45271071 ATAATCCCGA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
28 7 0.16
29 13 0.30
30 11 0.26
31 12 0.28
ACGTcount: A:0.32, C:0.35, G:0.04, T:0.29
Consensus pattern (28 bp):
CCTTAACCCTTGAACCATAAATCCTAAA
Found at i:45271210 original size:14 final size:14
Alignment explanation
Indices: 45271191--45271241 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
45271181 TAACTCATCA
45271191 TAAACTATAAACCC
1 TAAACTATAAACCC
*
45271205 TAAACTATATA-CC
1 TAAACTATAAACCC
* *
45271218 TAAACCATAAACCT
1 TAAACTATAAACCC
45271232 TAAACTATAA
1 TAAACTATAA
45271242 TGATAAGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACTATAAACCC
Found at i:45271608 original size:41 final size:41
Alignment explanation
Indices: 45271522--45271854 Score: 409
Period size: 41 Copynumber: 8.1 Consensus size: 41
45271512 TTTGTGGCAC
* * * * *
45271522 TTTTTGAAAAAACGCCGCTATAAAT-AGAGCAATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* * *
45271562 TTTTTCAAAAAGCGCCGCTACAGATCTAAGCATTAGCGGCA
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* *
45271603 TTTTTCAAAAAAGCGCTGCTATAGATTTGAGCATTAGCGGCG
1 TTTTTC-AAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
*
45271645 TTTTTCAATAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* * *
45271686 TTTTTCAAAAAGCGCCACTATAGATCTAAGCATTAGCGGTG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
** *
45271727 TTTTT-AAAAATGCGTTGCCATAGATCTGAGCATTAGCGGCG
1 TTTTTCAAAAA-GCGCCGCTATAGATCTGAGCATTAGCGGCG
* * *
45271768 TTTTTAAAAAAGCGCCGCCATATATCTGAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* * * *
45271809 TTGTTCATAAAGCGCCACTATAGATATGAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
*
45271850 CTTTT
1 TTTTT
45271855 GGCAAAACGC
Statistics
Matches: 251, Mismatches: 38, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
40 26 0.10
41 184 0.73
42 41 0.16
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (41 bp):
TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
Found at i:45271785 original size:123 final size:124
Alignment explanation
Indices: 45271522--45271848 Score: 453
Period size: 123 Copynumber: 2.7 Consensus size: 124
45271512 TTTGTGGCAC
* * * *
45271522 TTTTTGAAAAAA-CGCCGCTATAAAT-AGAGCAATAGCGGCGTTTTTCAAAAAGCGCCGCTACAG
1 TTTTT-AAAAAAGCGCCGCTATAAATCTGAGCATTAGCGGCGTTTTTCAAAAAGCGCCACTATAG
* *
45271585 ATCTAAGCATTAGCGGCATTTTTCAAAAAAGCGCTGCTATAGATTTGAGCATTAGCGGCG
65 ATCTAAGCATTAGCGGCATTTTTCAAAAAAGCGCTGCCATAGATCTGAGCATTAGCGGCG
* * *
45271645 TTTTTCAATAAGCGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCAAAAAGCGCCACTATAGA
1 TTTTTAAAAAAGCGCCGCTATAAATCTGAGCATTAGCGGCGTTTTTCAAAAAGCGCCACTATAGA
** * *
45271710 TCTAAGCATTAGCGGTGTTTTT-AAAAATGCGTTGCCATAGATCTGAGCATTAGCGGCG
66 TCTAAGCATTAGCGGCATTTTTCAAAAAAGCGCTGCCATAGATCTGAGCATTAGCGGCG
* * * *
45271768 TTTTTAAAAAAGCGCCGCCATATATCTGAGCATTAGCGGCGTTGTTCATAAAGCGCCACTATAGA
1 TTTTTAAAAAAGCGCCGCTATAAATCTGAGCATTAGCGGCGTTTTTCAAAAAGCGCCACTATAGA
* *
45271833 TATGAGCATTAGCGGC
66 TCTAAGCATTAGCGGC
45271849 GCTTTTGGCA
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
122 4 0.02
123 121 0.67
124 55 0.31
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (124 bp):
TTTTTAAAAAAGCGCCGCTATAAATCTGAGCATTAGCGGCGTTTTTCAAAAAGCGCCACTATAGA
TCTAAGCATTAGCGGCATTTTTCAAAAAAGCGCTGCCATAGATCTGAGCATTAGCGGCG
Found at i:45273208 original size:39 final size:40
Alignment explanation
Indices: 45273141--45273219 Score: 151
Period size: 39 Copynumber: 2.0 Consensus size: 40
45273131 GGAATGGTAA
45273141 ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
1 ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
45273181 ACTCATACTAAA-TTTTTTATGGGTAAACTATAAAAATGT
1 ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
45273220 CACCCAACTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
39 27 0.69
40 12 0.31
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (40 bp):
ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
Found at i:45280876 original size:13 final size:13
Alignment explanation
Indices: 45280868--45280892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45280858 CGAAATTAAT
45280868 AATAAAAATAAAA
1 AATAAAAATAAAA
45280881 AATAAAAATAAA
1 AATAAAAATAAA
45280893 CTTTCTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:45291057 original size:20 final size:21
Alignment explanation
Indices: 45291032--45291070 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
45291022 CCCAATGTAC
45291032 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
45291052 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
45291071 TGATTTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:45291297 original size:43 final size:42
Alignment explanation
Indices: 45291242--45291408 Score: 178
Period size: 43 Copynumber: 4.0 Consensus size: 42
45291232 ATATCGTACA
*
45291242 ATGCCAACATCCCAGACGTGGTCTTACATGCTATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACG-TATCACATATCG
* *
45291285 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGTATCACATATCG
* * ** * *
45291326 ATGTCGATGTCCCGGACATGGTCTTACACGTGATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGT-ATCACATATCG
* *
45291369 ATGCCAACATCCAAGACGTGGTCTTACACGAATCACATAT
1 ATGCCAACATCCCAGACGTGGTCTTACACGTATCACATAT
45291409 AGGAAATCTT
Statistics
Matches: 100, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
41 24 0.24
42 26 0.26
43 49 0.49
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTATCACATATCG
Found at i:45299193 original size:50 final size:51
Alignment explanation
Indices: 45299065--45299255 Score: 208
Period size: 50 Copynumber: 3.8 Consensus size: 51
45299055 TATGAGGTCG
* * * *
45299065 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
** ** *
45299116 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGAT-GGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
* * * * *
45299166 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCGGATAA-TTTG-TCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
* * *
45299215 CATGTATAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
45299256 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 37 0.32
50 44 0.38
51 35 0.30
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
Found at i:45303145 original size:13 final size:13
Alignment explanation
Indices: 45303127--45303151 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45303117 TATGGTCTAC
45303127 GATTTCGCGAAAT
1 GATTTCGCGAAAT
45303140 GATTTCGCGAAA
1 GATTTCGCGAAA
45303152 ATTTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (13 bp):
GATTTCGCGAAAT
Found at i:45304614 original size:50 final size:51
Alignment explanation
Indices: 45304493--45304681 Score: 204
Period size: 50 Copynumber: 3.8 Consensus size: 51
45304483 TGAGGCCACA
* * * *
45304493 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
* ** *
45304544 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
* * * * * *
45304594 TGTGTTGTACTAAGTGCAGGCTACTACATGTACCGGATAA-TTTG-TCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
* * *
45304643 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
45304682 GCTTTGGCTA
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 36 0.31
50 45 0.39
51 34 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCACG
Found at i:45308545 original size:27 final size:27
Alignment explanation
Indices: 45308508--45308566 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
45308498 GGTCATTAAG
45308508 ACCCC-AGTTTGTAAAAGTACCAAAAT
1 ACCCCTAGTTTGTAAAAGTACCAAAAT
* * *
45308534 ACCCCTAGTTTGTAAAATTACCGAATT
1 ACCCCTAGTTTGTAAAAGTACCAAAAT
45308561 ACCCCT
1 ACCCCT
45308567 GTAAGGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.27
Consensus pattern (27 bp):
ACCCCTAGTTTGTAAAAGTACCAAAAT
Found at i:45311947 original size:192 final size:192
Alignment explanation
Indices: 45311620--45311992 Score: 530
Period size: 192 Copynumber: 1.9 Consensus size: 192
45311610 CTGAATATAG
* * * * * *
45311620 TGTAACACCCCTAACCTCCATCTGTCGTCAGAATAGGGTTTCAGAATATTACCTAAACTTTAAGA
1 TGTAACAACCCTAACCTACATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
** * *
45311685 ATGTTTTACAAATAATCTATGTAAATTACTATTCATTAACCGAGATCATTCAAAACATCCCTGAA
66 ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
* * * * * * *
45311750 TTGGACCTTGAAGGCCTAATACGAGCATTAGATTCGAGTCGAGACTTAATCGGCACTCCAAA
131 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATCGGCACTCCAAA
* *
45311812 TGTAACAACCCTAACCTACATCTATCGTCAGAATAGGGTTTCAGAGCAATACCGAAACTTTTAGA
1 TGTAACAACCCTAACCTACATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
* * * *
45311877 ACATTTTACAAATAATTTATGTAAATTACTATTTATTAACCAAGATCATTAAAAACGTCCCTTAA
66 ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
*
45311942 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGGGACTTAATC
131 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATC
45311993 AGGAACTCTA
Statistics
Matches: 157, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
192 157 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (192 bp):
TGTAACAACCCTAACCTACATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATCGGCACTCCAAA
Found at i:45313771 original size:13 final size:13
Alignment explanation
Indices: 45313753--45313777 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45313743 GATATTATAT
45313753 GTGTGAAAATTTC
1 GTGTGAAAATTTC
45313766 GTGTGAAAATTT
1 GTGTGAAAATTT
45313778 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:45315050 original size:43 final size:44
Alignment explanation
Indices: 45314892--45315055 Score: 162
Period size: 43 Copynumber: 3.8 Consensus size: 44
45314882 ATAGGATTCT
* * *
45314892 GATATGTGA-TTTCATGTAAGACCACGTCTGGGAC-GTTGGAATT
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAG-TGGCATC
* * * *
45314935 GATTTGTGATTTACATGTAAGACCATGTTTGGGACA-TCGGCATC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGT-GGCATC
* **
45314979 G-TATATGAGTT-TGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGAGTTACATGTAAGACCAC-GTCTGGGACAGTGGCATC
45315021 GATATGTGA-TTACATGTAAGACCACGTCTGGGACA
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACA
45315056 TTAGCGTTGT
Statistics
Matches: 97, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 28 0.29
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (44 bp):
GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:45323316 original size:157 final size:157
Alignment explanation
Indices: 45323030--45323345 Score: 623
Period size: 157 Copynumber: 2.0 Consensus size: 157
45323020 CCAGGGGTTA
45323030 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
*
45323095 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTCAATTTTGGAATGAG
45323160 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
45323187 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
45323252 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTCAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTCAATTTTGGAATGAG
45323317 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
45323344 AT
1 AT
45323346 GGGTTTTATT
Statistics
Matches: 158, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 158 1.00
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (157 bp):
ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTCAATTTTGGAATGAG
GGATTAAATCATTAAAGGTGTAAATCT
Found at i:45326727 original size:40 final size:40
Alignment explanation
Indices: 45326644--45326789 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
45326634 TTGAATGATG
* * * *
45326644 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
45326684 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45326724 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45326765 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45326790 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45326796 original size:80 final size:80
Alignment explanation
Indices: 45326644--45326822 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 80
45326634 TTGAATGATG
* *
45326644 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
45326709 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
45326724 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
45326787 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
45326804 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45326823 TACGTGATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
79 17 0.20
80 61 0.73
81 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:45343383 original size:46 final size:45
Alignment explanation
Indices: 45343316--45343490 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
45343306 TGTAACCCGC
* *
45343316 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * *
45343362 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-GGCTTAGCAT
* *** * * * *
45343408 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* *
45343455 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
45343491 ATGCCCAAAT
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:45343437 original size:93 final size:93
Alignment explanation
Indices: 45343324--45343495 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
45343314 GCCCATAAGT
* * *
45343324 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
45343389 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * * *
45343417 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
* *
45343482 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
45343496 CAAATATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:45347068 original size:16 final size:16
Alignment explanation
Indices: 45347049--45347080 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45347039 CAATTTTTAT
*
45347049 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
45347065 AAAATCTTTGTTTTTG
1 AAAATCTTTGTTTTTG
45347081 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:45348110 original size:27 final size:28
Alignment explanation
Indices: 45348069--45348128 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
45348059 TGTGACAGTT
*
45348069 ACCAGATACAGATAATCGTTGCAGAGCC
1 ACCAGATACAGATAATCGTAGCAGAGCC
* *
45348097 ACCAGAT-CAGATAATTGTAGCATAGCC
1 ACCAGATACAGATAATCGTAGCAGAGCC
45348124 ACCAG
1 ACCAG
45348129 GACGCTTCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (28 bp):
ACCAGATACAGATAATCGTAGCAGAGCC
Found at i:45355200 original size:19 final size:19
Alignment explanation
Indices: 45355176--45355215 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
45355166 TGTGCCATCG
*
45355176 TAAATTCATAGGCATAACT
1 TAAATTCATAAGCATAACT
*
45355195 TAAATTTATAAGCATAACT
1 TAAATTCATAAGCATAACT
45355214 TA
1 TA
45355216 CACATTTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAATTCATAAGCATAACT
Found at i:45366787 original size:46 final size:46
Alignment explanation
Indices: 45366682--45367001 Score: 199
Period size: 46 Copynumber: 6.8 Consensus size: 46
45366672 ACATTATGAG
** *
45366682 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TCGAGATGTA
* **
45366729 GAGCTAGTGTAAGA-CATGTCTAAGACATGCATCTGGCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATC-GGCTCGAGATGTA
*
45366776 AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGACTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATGTA
* * * *
45366821 -GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACAGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTC-GAGATGT-A
* * * * * **
45366869 GAGCTAGAGTAATACCATGT-TTGGACATGGCGTCGGCCTCGATTTCG-A
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG-CTCGAGAT-GTA
** * * * *
45366917 TAGTTAGTGTAAGACCATATCTGCGACATGGCATCGACT--TGATGGATA
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGAT-G-TA
*
45366965 AGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
45367002 ATTATACCCT
Statistics
Matches: 214, Mismatches: 43, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
44 11 0.05
45 18 0.08
46 61 0.29
47 47 0.22
48 31 0.14
49 29 0.14
50 17 0.08
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTA
Found at i:45368029 original size:28 final size:28
Alignment explanation
Indices: 45367988--45368048 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
45367978 ACACGAGCTA
* *
45367988 GGACACAGGTGTGTCATGG-TCGTCTGAG
1 GGACAAAGGCGTGTCATGGCT-GTCTGAG
*
45368016 GGACAAAGGCGTGTCATGGCTGTGTGAG
1 GGACAAAGGCGTGTCATGGCTGTCTGAG
45368044 GGACA
1 GGACA
45368049 CGGGCCATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.21, C:0.16, G:0.41, T:0.21
Consensus pattern (28 bp):
GGACAAAGGCGTGTCATGGCTGTCTGAG
Found at i:45374441 original size:46 final size:45
Alignment explanation
Indices: 45374306--45374525 Score: 189
Period size: 46 Copynumber: 4.8 Consensus size: 45
45374296 TTATTTGTGT
* *
45374306 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GAT-AGA
* * * * *
45374352 GCCAGCGTAAGACCATATCTGGGACATGGCATCGGCATTGAGATAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-AGA
45374400 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-GTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAG--A
* * * * *
45374446 GCCAGTGTAAGACATATCTAGGACATGCATCGG-CTAAGAGAT-GC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATAGA
*
45374490 G-TCAGAGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
45374526 ATGGATATTT
Statistics
Matches: 142, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 68 0.48
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGA
Found at i:45385706 original size:45 final size:45
Alignment explanation
Indices: 45385646--45385738 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 45
45385636 ATCTTTAATG
* * *
45385646 TGTCATAAGTTTATTAATTGTGTCCTATTTAGTACAGTATTTTAA
1 TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
* * * *
45385691 TGTCTTAAGTCTATTAATTTTGTCTTACTTAGTATAGCATTTTAA
1 TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
45385736 TGT
1 TGT
45385739 GTCTTTGTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (45 bp):
TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
Found at i:45388451 original size:43 final size:42
Alignment explanation
Indices: 45388360--45388464 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 42
45388350 GAGTTTTATG
* *
45388360 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATATCA
1 TGTAAGACCCTGTCTGGGACATCAGCATCGTATTTGATATCA
*
45388402 TGTAAGACCCTGTCTGGGATAGT-AGCATCGATATTTGAT-TACA
1 TGTAAGACCCTGTCTGGGACA-TCAGCATCG-TATTTGATAT-CA
45388445 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
45388465 GTTGGCATTC
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
42 26 0.47
43 28 0.51
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACATCAGCATCGTATTTGATATCA
Found at i:45389231 original size:20 final size:22
Alignment explanation
Indices: 45389192--45389232 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
45389182 TATATGTTTG
45389192 GTATGATTTTGGCTTATGAATGA
1 GTATGATTTTGGC-TATGAATGA
45389215 GTATGA-TTTGG-TATGAAT
1 GTATGATTTTGGCTATGAAT
45389233 TTAGAGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
GTATGATTTTGGCTATGAATGA
Found at i:45392944 original size:37 final size:37
Alignment explanation
Indices: 45392893--45393000 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
45392883 AACTTGGAAA
*
45392893 TATGTTCCGGGTAAGAACCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
45392931 TATGTCTGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* *
45392968 TTTGTCCGGGTAAGACCCGATAACTACGTGTGG
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGG
45393001 GGACTATTCG
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 61 0.94
38 4 0.06
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:45394351 original size:40 final size:40
Alignment explanation
Indices: 45394289--45394700 Score: 689
Period size: 40 Copynumber: 10.3 Consensus size: 40
45394279 GAGTTATATA
*
45394289 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
45394329 TATCTGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
45394369 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
45394409 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
45394449 TATCTGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
45394489 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
45394529 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
45394569 TATACGGGATAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
45394609 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
45394649 TATCCAGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
45394689 TATCCGGGCTAA
1 TATCCGGGCTAA
45394701 ACCTCGAAGG
Statistics
Matches: 350, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 350 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:45394772 original size:28 final size:28
Alignment explanation
Indices: 45394732--45394886 Score: 125
Period size: 28 Copynumber: 5.5 Consensus size: 28
45394722 GAGTTATGAG
* *
45394732 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCAAGTTCTTCAATCGA
* * * * *
45394760 GCACTATGTGTGCCAGATCAGT-AGTTGA
1 GCACTATGTGTGCAAGTTC-TTCAATCGA
45394788 GGCACTATGTGTGCAAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGTTCTTCAATCGA
* ** *
45394817 GCACTATGTGTGCGAGATTGGT-AATTGA
1 GCACTATGTGTGCAAG-TTCTTCAATCGA
* * *
45394845 GGCACTATGTGTGCGATTTCTTTAATCGA
1 -GCACTATGTGTGCAAGTTCTTCAATCGA
*
45394874 GCGCTATGTGTGC
1 GCACTATGTGTGC
45394887 GAAATCAGTC
Statistics
Matches: 100, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
28 55 0.55
29 45 0.45
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCAAGTTCTTCAATCGA
Found at i:45394818 original size:57 final size:57
Alignment explanation
Indices: 45394728--45394895 Score: 237
Period size: 57 Copynumber: 2.9 Consensus size: 57
45394718 GCTAGAGTTA
* * * *
45394728 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
**
45394785 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* * * * *
45394842 TGAGGCACTATGTGTGCGATTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
45394896 CAGTGGGCAC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 98 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:45394859 original size:29 final size:29
Alignment explanation
Indices: 45394760--45394860 Score: 107
Period size: 29 Copynumber: 3.5 Consensus size: 29
45394750 CTTCAACCGA
* * *
45394760 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** *
45394789 GCACTATGTGTGCAAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
45394817 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
45394846 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
45394861 TTTCTTTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:45397741 original size:37 final size:37
Alignment explanation
Indices: 45397682--45397781 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
45397672 GGAAATATAT
45397682 TCCGGGTAAGA-CC--TGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
45397716 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
45397753 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
45397782 GGACTATTCG
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
34 10 0.17
35 2 0.03
37 47 0.80
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:45409005 original size:19 final size:17
Alignment explanation
Indices: 45408978--45409029 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 17
45408968 ACTTGCACTC
45408978 TTTTTCTTTTTCAATCT
1 TTTTTCTTTTTCAATCT
*
45408995 CGTTTTGCTTTTTCTCAATCT
1 --TTTTTC-TTTT-TCAATCT
45409016 TTTTTCTTTTTCAA
1 TTTTTCTTTTTCAA
45409030 ATTCTTTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 4 0.14
18 4 0.14
19 10 0.34
20 4 0.14
21 7 0.24
ACGTcount: A:0.12, C:0.19, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTTTCTTTTTCAATCT
Found at i:45409035 original size:19 final size:18
Alignment explanation
Indices: 45408978--45409036 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
45408968 ACTTGCACTC
*
45408978 TTTTTCTTTTTCAATCTCG
1 TTTTTCTTTTTCAAT-TCT
*
45408997 TTTTGCTTTTTCTCAA-TCT
1 TTTTTC-TTTT-TCAATTCT
45409016 TTTTTCTTTTTCAAATTCT
1 TTTTTCTTTTTC-AATTCT
45409035 TT
1 TT
45409037 CTCACATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.06
18 6 0.18
19 17 0.52
20 4 0.12
21 4 0.12
ACGTcount: A:0.12, C:0.19, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTTCTTTTTCAATTCT
Found at i:45412902 original size:42 final size:41
Alignment explanation
Indices: 45412791--45412944 Score: 148
Period size: 42 Copynumber: 3.7 Consensus size: 41
45412781 TACCATACCA
* * **
45412791 ATGCCATATCCCAGATATGGTCTTACATGGGATCTTGTATTG
1 ATGCCATATCCCAGATATGATCTTACAT-GAATCTCATATTG
* * * *
45412833 ATGCCAATAGCCCAGCTAT-AGCCTTACATGACATCTCACATTG
1 ATGCC-ATATCCCAGATATGA-TCTTACATGA-ATCTCATATTG
* *
45412876 ATGCCATACCCCAGATATCATCTTACATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGATCTTACATGAA-TCTCATATTG
* *
45412918 ATGCCATATCTCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGATCTTACA
45412945 CATAGTCTTC
Statistics
Matches: 91, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 58 0.64
43 32 0.35
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGATCTTACATGAATCTCATATTG
Found at i:45414359 original size:41 final size:42
Alignment explanation
Indices: 45414197--45414347 Score: 225
Period size: 42 Copynumber: 3.6 Consensus size: 42
45414187 TAACAGTGAT
*
45414197 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATA
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* *
45414239 ATATCAGGCTTATTGCCTAGAAGGCTTTGATGCTGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
*
45414281 ATATCAGGCTTATTGCCTAGTAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
* *
45414323 A-ATCAGGTTTATTACCTAGCAGGCT
1 ATATCAGGCTTATTGCCTAGCAGGCT
45414348 CTGTGTCGGT
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
41 31 0.31
42 69 0.69
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
Found at i:45420336 original size:32 final size:32
Alignment explanation
Indices: 45420300--45420364 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
45420290 AAAGTTTGAC
45420300 AGTAGCACTAGATCATCAGAAATCGTATGCAG
1 AGTAGCACTAGATCATCAGAAATCGTATGCAG
45420332 AGTAGCACTAGATCATCAGAAATCGTATGCAG
1 AGTAGCACTAGATCATCAGAAATCGTATGCAG
45420364 A
1 A
45420365 CTTAAAACGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (32 bp):
AGTAGCACTAGATCATCAGAAATCGTATGCAG
Found at i:45422098 original size:41 final size:42
Alignment explanation
Indices: 45422041--45422190 Score: 191
Period size: 41 Copynumber: 3.6 Consensus size: 42
45422031 TAACAGTGAT
*
45422041 ATATCAGGCTTGTTGCCTAGCAGGCTTTGATGCCGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* *
45422083 ATATC-GGCTTATTGCCTAGC-GAGCTATGATGCTGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAG-GCTTTGATGCCGGTGTATG
* *
45422124 ATATCAGGCTTATTTCCTAGTAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
* *
45422166 A-ATCAGGTTTATTACCTAGCAGGCT
1 ATATCAGGCTTATTGCCTAGCAGGCT
45422191 CTGTGCCACT
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 1 0.01
41 67 0.71
42 25 0.27
43 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
Found at i:45423214 original size:12 final size:12
Alignment explanation
Indices: 45423197--45423222 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45423187 TTGTGTATTG
45423197 ATATGTATATAT
1 ATATGTATATAT
45423209 ATATGTATATAT
1 ATATGTATATAT
45423221 AT
1 AT
45423223 TTGAATGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:45429447 original size:42 final size:42
Alignment explanation
Indices: 45429307--45429466 Score: 153
Period size: 42 Copynumber: 3.8 Consensus size: 42
45429297 CACACGGTAC
* * * *
45429307 CATACCAATGCCATATCCCAGATTTGGTCTTATATG-GGATCT
1 CATACTAATGCCATATCCCAGATATGGTCTTACATGAAG-TCT
* * * * * * *
45429349 CATATTGATGCCATAGCACAGCTATGGTCTTACACGAAATCT
1 CATACTAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
* *
45429391 CACA-TCGATGCCATATCCCAGATATGGTCTTACATGAAGTCT
1 CATACT-AATGCCATATCCCAGATATGGTCTTACATGAAGTCT
* *
45429433 CATACTAATACCATATCCCAGATATGGTTTTACA
1 CATACTAATGCCATATCCCAGATATGGTCTTACA
45429467 CATAGTCTTA
Statistics
Matches: 94, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 92 0.98
43 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
CATACTAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
Found at i:45429447 original size:84 final size:84
Alignment explanation
Indices: 45429314--45429467 Score: 202
Period size: 84 Copynumber: 1.8 Consensus size: 84
45429304 TACCATACCA
* * * * * * *
45429314 ATGCCATATCCCAGATTTGGTCTTATATGGGATCTCATATTGATGCCATAGCACAGCTATGGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGAGATCTCATACTAATACCATAGCACAGATATGGTCT
45429379 TACACGAAATCTCACATCG
66 TACACGAAATCTCACATCG
* * *
45429398 ATGCCATATCCCAGATATGGTCTTACATGA-AGTCTCATACTAATACCATATCCCAGATATGGTT
1 ATGCCATATCCCAGATATGGTCTTACATGAGA-TCTCATACTAATACCATAGCACAGATATGGTC
45429462 TTACAC
65 TTACAC
45429468 ATAGTCTTAG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
83 1 0.02
84 58 0.98
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACATGAGATCTCATACTAATACCATAGCACAGATATGGTCT
TACACGAAATCTCACATCG
Found at i:45430104 original size:19 final size:19
Alignment explanation
Indices: 45430080--45430118 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
45430070 ACAAATATAT
45430080 AACATAGGTCAAATTTTAG
1 AACATAGGTCAAATTTTAG
45430099 AACATAGGTCAAATTTTAG
1 AACATAGGTCAAATTTTAG
45430118 A
1 A
45430119 CTTTGATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (19 bp):
AACATAGGTCAAATTTTAG
Found at i:45441655 original size:16 final size:16
Alignment explanation
Indices: 45441634--45441673 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
45441624 GATCGGCAAA
*
45441634 AGCCGAAATGTCGAAG
1 AGCCGAAATGCCGAAG
45441650 AGCCGAAATGCCGAAG
1 AGCCGAAATGCCGAAG
45441666 AGCCGAAA
1 AGCCGAAA
45441674 GTTTGGCTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.30, T:0.07
Consensus pattern (16 bp):
AGCCGAAATGCCGAAG
Found at i:45441945 original size:29 final size:29
Alignment explanation
Indices: 45441885--45442031 Score: 122
Period size: 29 Copynumber: 5.1 Consensus size: 29
45441875 GTGAGCATGA
* * *
45441885 ATAT-AAGGTGATTTGGGCCTAACGGACC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
* *
45441913 ATATAAAGGTGATTTGGGCCTAATGGGCT
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
* ** *
45441942 ATATGAATATAAATTGGGCCTAATGGGCC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
* * * *
45441971 ATATGAATGTGAATTGGGTCTGATGGGCC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
*
45442000 ATATAAA--TAAGATTGGGCC-AAGTGGGCC
1 ATATAAAGGTGA-ATTGGGCCTAA-TGGGCC
45442028 ATAT
1 ATAT
45442032 GCAAGTATGT
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 3 0.03
28 21 0.21
29 75 0.76
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGAATTGGGCCTAATGGGCC
Found at i:45441973 original size:58 final size:57
Alignment explanation
Indices: 45441897--45442031 Score: 157
Period size: 58 Copynumber: 2.4 Consensus size: 57
45441887 ATAAGGTGAT
* * * *
45441897 TTGGGCCTAACGGACCATATAAAGGTGATTTGGGCCTAATGGGCTATATGAATATAA-A
1 TTGGGCCTAATGGGCCATATAAAGGTGAATTGGGCCTAATGGGCCATAT-AA-ATAAGA
* * * *
45441955 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGTCTGATGGGCCATATAAATAAGA
1 TTGGGCCTAATGGGCCATATAAAGGTGAATTGGGCCTAATGGGCCATATAAATAAGA
45442012 TTGGGCC-AAGTGGGCCATAT
1 TTGGGCCTAA-TGGGCCATAT
45442032 GCAAGTATGT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
56 6 0.09
57 20 0.30
58 41 0.61
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (57 bp):
TTGGGCCTAATGGGCCATATAAAGGTGAATTGGGCCTAATGGGCCATATAAATAAGA
Found at i:45446835 original size:15 final size:17
Alignment explanation
Indices: 45446817--45446849 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45446807 AGCTTAATTT
45446817 ACCAAA-TCA-ATTCAC
1 ACCAAACTCACATTCAC
45446832 ACCAAACTCACATTCAC
1 ACCAAACTCACATTCAC
45446849 A
1 A
45446850 AGTATCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (17 bp):
ACCAAACTCACATTCAC
Found at i:45452181 original size:16 final size:16
Alignment explanation
Indices: 45452162--45452193 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45452152 AATTGTTTTA
45452162 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
45452178 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
45452194 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:45452513 original size:50 final size:50
Alignment explanation
Indices: 45452406--45452941 Score: 368
Period size: 50 Copynumber: 10.7 Consensus size: 50
45452396 CTGGTATGCA
* * * *
45452406 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCT-AGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGA-TACACG
* * * * *
45452456 TATTAGCCTACACTTAGTACTATACATGTGACTTAACCATCTGATACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * * * * *
45452506 TAATAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACT-TAA--CAATCTGATACACG
* * * * * * *
45452557 TAGTAGCCTGCACTTAGTACTACATATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGATACACG
*
45452607 TAGTAGCC-AGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTA-CACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * * * *
45452657 TAGTAGCCTATACTTAGTACTATACACGTGA-TCAA-AGTTAACAGATACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACA---ATCTGATACACG
* * ** * * *
45452708 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * *
45452758 TAGTAGACTGCACTTAGTACTACATACGTAACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * * * * *
45452808 TAGTAGCCTACAGTTAGTACTACACACATGA-TCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACT-TAA--CAATCTGATACACG
* * * * * * * *
45452859 TAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGATACACG
*
45452909 TAGTAGCCTACACTTAGTACTACACACATGACT
1 TAGTAGCCTACACTTAGTACTACACACGTGACT
45452942 CAGAACGAAT
Statistics
Matches: 367, Mismatches: 101, Indels: 36
0.73 0.20 0.07
Matches are distributed among these distances:
49 9 0.02
50 254 0.69
51 100 0.27
52 3 0.01
53 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACTTAACAATCTGATACACG
Found at i:45452599 original size:101 final size:100
Alignment explanation
Indices: 45452406--45452935 Score: 413
Period size: 101 Copynumber: 5.3 Consensus size: 100
45452396 CTGGTATGCA
* * * ** ** * * *
45452406 TAGTAGCCTACACTTAGTACTACACATGCGA-CCTATCAATCTAGTACACGTATTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATCAA-CGGGTACACATAGTAGCCTGCACT
* * * * *
45452470 TAGTACTATACATGTGACTTAACCATCTGATACATG
65 TAGTACTACACATGTGACCTATCAATCTGATACACG
* * *
45452506 TAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TCAACGGGTACACATAGTAGCCTGCACT
* * *
45452571 TAGTACTACATATGCGACCTATCAATCTGGTACACG
65 TAGTACTACACATGTGACCTATCAATCTGATACACG
* * * * * * * **
45452607 TAGTAGCCAGCACTTAGTACTACACACGTGA-CTTAACCATCTGATACACGTAGTAGCCTATACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATC-GAATCAACGGGTACACATAGTAGCCTGCACT
* * ** * * * *
45452671 TAGTACTATACACGTGATCAAAGTTAA-CAGATACGCA
65 TAGTACTACACATGTGA-CCTA-TCAATCTGATACACG
* ** * * *
45452708 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCTATCAATCTGGTACACGTAGTAGACTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAATCAA-CGGGTACACATAGTAGCCTGCAC
* * * * * *
45452771 TTAGTACTACATACGTAACTTAACCATCTGATACACG
64 TTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * * * *
45452808 TAGTAGCCTACAGTTAGTACTACACACATGATCGAAGTTAACGGGTACGCATAATAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TCAACGGGTACACATAGTAGCCTGCACT
* * *
45452873 TAGTACTACACATGCGACCTATCAATCTGGTACATG
65 TAGTACTACACATGTGACCTATCAATCTGATACACG
*
45452909 TAGTAGCCTACACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
45452936 ATGACTCAGA
Statistics
Matches: 333, Mismatches: 85, Indels: 23
0.76 0.19 0.05
Matches are distributed among these distances:
99 3 0.01
100 97 0.29
101 222 0.67
102 11 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATCAACGGGTACACATAGTAGCCTGCACTT
AGTACTACACATGTGACCTATCAATCTGATACACG
Found at i:45452677 original size:151 final size:151
Alignment explanation
Indices: 45452398--45452941 Score: 847
Period size: 151 Copynumber: 3.6 Consensus size: 151
45452388 GGAGCTCTCT
* * * *
45452398 GGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTATTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
45452463 CTACACTTAGTACTATACATGTGACTTAACCATCTGATACATGTAATAGCCTGCACTTAGTACTA
66 CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
45452528 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
*
45452549 GGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
45452614 C-AGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTATACTTAGTACT
66 CTA-CACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACT
* * *
45452678 ATACACGTGATCAAAGTTAACA
130 ACACACGTGATCGAAGTTAACG
* * *
45452700 GATACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
45452765 CTGCACTTAGTACTACATACGTAACTTAACCATCTGATACACGTAGTAGCCTACAGTTAGTACTA
66 CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
45452830 CACACATGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
45452851 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
45452916 CTACACTTAGTACTACACACATGACT
66 CTACACTTAGTACTACACACGTGACT
45452942 CAGAACGAAT
Statistics
Matches: 355, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
150 1 0.00
151 354 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:45453321 original size:18 final size:20
Alignment explanation
Indices: 45453290--45453336 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
45453280 AAGAATAGGT
*
45453290 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
45453311 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
45453330 TATATAT
1 TATATAT
45453337 ATACTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:45456645 original size:28 final size:28
Alignment explanation
Indices: 45456613--45456674 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
45456603 TTTATATAAA
* *
45456613 AAATAGACTTTGGCCCCAACGGCTAATT
1 AAATAGACGTTGGCCCCAACGACTAATT
* * *
45456641 AAATAGCCGTTGGTCCCAACTACTAATT
1 AAATAGACGTTGGCCCCAACGACTAATT
45456669 AAATAG
1 AAATAG
45456675 TCATTGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (28 bp):
AAATAGACGTTGGCCCCAACGACTAATT
Found at i:45456893 original size:12 final size:12
Alignment explanation
Indices: 45456876--45456902 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45456866 CGTAATTTTT
45456876 TAAAAAATAGTC
1 TAAAAAATAGTC
45456888 TAAAAAATAGTC
1 TAAAAAATAGTC
45456900 TAA
1 TAA
45456903 TCTTGTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (12 bp):
TAAAAAATAGTC
Found at i:45461163 original size:13 final size:13
Alignment explanation
Indices: 45461145--45461169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45461135 AGTTTTTTTA
45461145 TTTTTAATTAATG
1 TTTTTAATTAATG
45461158 TTTTTAATTAAT
1 TTTTTAATTAAT
45461170 AAATATATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:45464593 original size:68 final size:64
Alignment explanation
Indices: 45464476--45464670 Score: 158
Period size: 68 Copynumber: 2.9 Consensus size: 64
45464466 ATACAGATAG
* ** * * * *
45464476 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAG-ACAAGAGAGCTAC--GACA
45464540 TTA
63 -TA
* * * **
45464543 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGATACGGGATA
1 T-ATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
* * * * *
45464608 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGA
1 TATGTAGCTAGGTCGCATGCGT-GATACTA-TG-TGCACACCATGTAGACAAGAGAGCTACGA
45464671 GATAAACTGG
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
64 20 0.19
65 7 0.07
66 4 0.04
67 26 0.25
68 46 0.44
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
Found at i:45467192 original size:35 final size:35
Alignment explanation
Indices: 45467153--45467259 Score: 106
Period size: 35 Copynumber: 3.1 Consensus size: 35
45467143 ACCATGGTTA
* * *
45467153 ATCCATGGAAAATTATGACATGTAGGTATGGTATT
1 ATCCATGCAAAATTATGACACGTAAGTATGGTATT
** *
45467188 ATCCATGCTGAGTTATGACACGTAAGTATGGTATT
1 ATCCATGCAAAATTATGACACGTAAGTATGGTATT
* ** * * *
45467223 ATCCATACTGAGTTATGATACGTAGGTATGGTATT
1 ATCCATGCAAAATTATGACACGTAAGTATGGTATT
45467258 AT
1 AT
45467260 ACATACTGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (35 bp):
ATCCATGCAAAATTATGACACGTAAGTATGGTATT
Found at i:45467265 original size:35 final size:35
Alignment explanation
Indices: 45467165--45467340 Score: 221
Period size: 35 Copynumber: 5.1 Consensus size: 35
45467155 CCATGGAAAA
* *
45467165 TTATGACATGTAGGTATGGTATTATCCATGCTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
*
45467200 TTATGACACGTAAGTATGGTATTATCCATACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
* *
45467235 TTATGATACGTAGGTATGGTATTATACATACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
* * * *
45467270 CTATAATACGTAGGTATGGTATT-TCCCATACCGAG
1 TTATGACACGTAGGTATGGTATTAT-CCATACTGAG
* * *
45467305 TTGTGAAACGTAGGTATGGTATTAACCATACT-AG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
45467339 TT
1 TT
45467341 GTGAATCGTG
Statistics
Matches: 123, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
34 5 0.04
35 118 0.96
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (35 bp):
TTATGACACGTAGGTATGGTATTATCCATACTGAG
Found at i:45469187 original size:11 final size:11
Alignment explanation
Indices: 45469171--45469197 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
45469161 AAAAATAGAC
45469171 TTTTAGTGGCG
1 TTTTAGTGGCG
45469182 TTTTAGTGGCG
1 TTTTAGTGGCG
45469193 TTTTA
1 TTTTA
45469198 ATAAAAAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.07, G:0.30, T:0.52
Consensus pattern (11 bp):
TTTTAGTGGCG
Found at i:45469244 original size:41 final size:40
Alignment explanation
Indices: 45469184--45469277 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
45469174 TAGTGGCGTT
* *
45469184 TTAGTGGCGTTTTAATAAAAAACG-CTGCTAAATATAGAGAA
1 TTAGCGGCGCTTTAAT-AAAAACGTC-GCTAAATATAGAGAA
* * * * *
45469225 TTAGCGGTGCTTTATTAAAAATGTCGCTAAATATCGAGCA
1 TTAGCGGCGCTTTAATAAAAACGTCGCTAAATATAGAGAA
45469265 TTAGCGGCGCTTT
1 TTAGCGGCGCTTT
45469278 CCAAAAAACA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 31 0.70
41 13 0.30
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (40 bp):
TTAGCGGCGCTTTAATAAAAACGTCGCTAAATATAGAGAA
Found at i:45469285 original size:40 final size:40
Alignment explanation
Indices: 45469210--45469285 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
45469200 AAAAAACGCT
* **
45469210 GCTAAATATAGAGAATTAGCGGTGCTTTATTAAAAATGTC
1 GCTAAATATAGAGAATTAGCGGCGCTTTACAAAAAATGTC
* * *
45469250 GCTAAATATCGAGCATTAGCGGCGCTTTCCAAAAAA
1 GCTAAATATAGAGAATTAGCGGCGCTTTACAAAAAA
45469286 CACCGCTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.28
Consensus pattern (40 bp):
GCTAAATATAGAGAATTAGCGGCGCTTTACAAAAAATGTC
Found at i:45469882 original size:24 final size:25
Alignment explanation
Indices: 45469834--45469884 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
45469824 CGTAAAAGAG
*
45469834 ATAGTATTGAATTTTGAAATATTGA
1 ATAGTATTGAATTTTAAAATATTGA
45469859 ATAGTATTGAA-TTTAAAATATTGA
1 ATAGTATTGAATTTTAAAATATTGA
45469883 AT
1 AT
45469885 TAATTTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (25 bp):
ATAGTATTGAATTTTAAAATATTGA
Found at i:45469893 original size:25 final size:25
Alignment explanation
Indices: 45469838--45469893 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
45469828 AAAGAGATAG
* *
45469838 TATTGAATTTTGAAATATTGAATAG
1 TATTGAATTTTAAAATATTGAATAA
45469863 TATTGAA-TTTAAAATATTGAATTAA
1 TATTGAATTTTAAAATATTGAA-TAA
*
45469888 TTTTGA
1 TATTGA
45469894 TTATAGTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (25 bp):
TATTGAATTTTAAAATATTGAATAA
Found at i:45469916 original size:14 final size:14
Alignment explanation
Indices: 45469894--45469948 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
45469884 TTAATTTTGA
*
45469894 TTATAGTTTAGGAT
1 TTATGGTTTAGGAT
45469908 TTATGGTTTAGGAT
1 TTATGGTTTAGGAT
* *
45469922 ATATGGTTTAGGGT
1 TTATGGTTTAGGAT
* *
45469936 TTAAGGGTTAGGA
1 TTATGGTTTAGGA
45469949 GTTACTATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAGGAT
Found at i:45470038 original size:21 final size:22
Alignment explanation
Indices: 45470014--45470067 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
45470004 TAGTTGGAGT
45470014 TTAAGGTTTAGGGGTTAG-GGG
1 TTAAGGTTTAGGGGTTAGAGGG
* * *
45470035 TTAAGGGTTAAGGGTTAGAGGT
1 TTAAGGTTTAGGGGTTAGAGGG
*
45470057 TTATGGTTTAG
1 TTAAGGTTTAG
45470068 ATCGAGTCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (22 bp):
TTAAGGTTTAGGGGTTAGAGGG
Found at i:45470041 original size:15 final size:14
Alignment explanation
Indices: 45470014--45470124 Score: 53
Period size: 14 Copynumber: 7.6 Consensus size: 14
45470004 TAGTTGGAGT
* *
45470014 TTAAGGTTTAGGGG
1 TTAAGGGTTAAGGG
*
45470028 TTAGGGGTTAAGGG
1 TTAAGGGTTAAGGG
*
45470042 TTAAGGGTTAGAGGT
1 TTAAGGGTTA-AGGG
* * *
45470057 TTATGGTTTAGATCGAG
1 TTAAGGGTTA-A--GGG
*
45470074 TCTAAGGGTTAGGGG
1 T-TAAGGGTTAAGGG
* *
45470089 TTAAGAGTTAA-GA
1 TTAAGGGTTAAGGG
* *
45470102 TTTAGGGTTTAGGG
1 TTAAGGGTTAAGGG
*
45470116 TTTAGGGTT
1 TTAAGGGTT
45470125 TAGAGTTTAA
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
13 9 0.12
14 38 0.53
15 16 0.22
17 2 0.03
18 7 0.10
ACGTcount: A:0.23, C:0.02, G:0.39, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTAAGGG
Found at i:45470112 original size:7 final size:7
Alignment explanation
Indices: 45470102--45470170 Score: 59
Period size: 7 Copynumber: 9.7 Consensus size: 7
45470092 AGAGTTAAGA
45470102 TTTAGGG
1 TTTAGGG
45470109 TTTAGGG
1 TTTAGGG
45470116 TTTAGGG
1 TTTAGGG
*
45470123 TTTAGAG
1 TTTAGGG
**
45470130 TTTAATG
1 TTTAGGG
45470137 TTTATGGG
1 TTTA-GGG
*
45470145 -ATAGGG
1 TTTAGGG
*
45470151 GTTAGAGG
1 TTTAG-GG
*
45470159 TTTAGGT
1 TTTAGGG
45470166 TTTAG
1 TTTAG
45470171 ATTAATTAGT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
6 3 0.06
7 40 0.80
8 7 0.14
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:45470679 original size:135 final size:137
Alignment explanation
Indices: 45470490--45470767 Score: 362
Period size: 135 Copynumber: 2.0 Consensus size: 137
45470480 TTTACAAAAA
* *
45470490 AACGCCGCAAAGAAGCAAAATAGTATAACGAGAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
1 AACGCCGCAAAAAAGCAAAATAGTATAACGAAAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
* * * *
45470555 TAGCGGCCTTTTT-T-TGCAAAAAACATAATAGTTTATCGTAAATGACATCGTTTTAATAGGAGA
66 TAACGGCCTTTTTATCAGCAAAAAACATAATAGTTTATCCTAAACGACATCGTTTTAATAGGAGA
45470618 TTTAGGG
131 TTTAGGG
* * **
45470625 AACGCCGCAAAAAAGCAATATAGTATAACGAAAACGGCGTTGTTTTAATTGGAGATTTAGGGGAT
1 AACGCCGCAAAAAAGCAAAATAGTATAACGAAAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
* * *
45470690 TAACGGCGTTTTTAAAAAATGCAGCAAAAAACATAATAGTTTATCCTAAACGTCGTCGTTTTAAT
66 TAACGGCCTTTTT-----AT-CAGCAAAAAACATAATAGTTTATCCTAAACGACATCGTTTTAAT
*
45470755 TGGAGATTTAGGG
125 AGGAGATTTAGGG
45470768 GATTAGCGTG
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
135 70 0.58
141 1 0.01
143 50 0.41
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (137 bp):
AACGCCGCAAAAAAGCAAAATAGTATAACGAAAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
TAACGGCCTTTTTATCAGCAAAAAACATAATAGTTTATCCTAAACGACATCGTTTTAATAGGAGA
TTTAGGG
Found at i:45470865 original size:82 final size:81
Alignment explanation
Indices: 45470631--45470874 Score: 321
Period size: 81 Copynumber: 3.0 Consensus size: 81
45470621 AGGGAACGCC
* * *
45470631 GCAAAAAAGCAATATAGTATAACGAAAACGGCGTTGTTTTAATTGGAGATTTAGGGGATTAACGG
1 GCAAAAAAGCAAAATAGTATAACG-AAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAGCGG
*
45470696 CGTTTTTAAAAAATGCA
65 CGTTTTTATAAAATGCA
* * * * *
45470713 GCAAAAAA-CATAATAGTTTATCCTAAACGTCGTCGTTTTAATTGGAGATTTAGGGGATTAGCGT
1 GCAAAAAAGCAAAATAGTATA-ACGAAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAGCG-
* *
45470777 G-TTTTTTATAAAATGCT
64 GCGTTTTTATAAAATGCA
45470794 GCAAAAAAGCAAAATAGTATAACGAGAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAGCGG
1 GCAAAAAAGCAAAATAGTATAACGA-AACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAGCGG
*
45470859 CGTTTTTTTGAAAATG
65 CGTTTTTAT-AAAATG
45470875 TCGTCGTTTA
Statistics
Matches: 138, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
81 69 0.50
82 63 0.46
83 6 0.04
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.31
Consensus pattern (81 bp):
GCAAAAAAGCAAAATAGTATAACGAAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAGCGGC
GTTTTTATAAAATGCA
Found at i:45471889 original size:35 final size:35
Alignment explanation
Indices: 45471843--45471911 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
45471833 CAGCAGACAT
45471843 GGTGAAGTCTCATTGTCGAGGTAACATACATCTGC
1 GGTGAAGTCTCATTGTCGAGGTAACATACATCTGC
45471878 GGTGAAGTCTCATTGTCGAGGTAACATACATCTG
1 GGTGAAGTCTCATTGTCGAGGTAACATACATCTG
45471912 ACTTGAATCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (35 bp):
GGTGAAGTCTCATTGTCGAGGTAACATACATCTGC
Found at i:45475096 original size:9 final size:9
Alignment explanation
Indices: 45475084--45475349 Score: 106
Period size: 9 Copynumber: 30.1 Consensus size: 9
45475074 TATATCATAT
45475084 CATAACTTA
1 CATAACTTA
45475093 CATAACTTA
1 CATAACTTA
*
45475102 CAAAACTTA
1 CATAACTTA
45475111 CATAA--TA
1 CATAACTTA
*
45475118 CATAA-ATA
1 CATAACTTA
* *
45475126 TATAACTTC
1 CATAACTTA
45475135 CATAACTTA
1 CATAACTTA
*
45475144 CGTAA--TA
1 CATAACTTA
*
45475151 CATAA-ATA
1 CATAACTTA
* ** *
45475159 TATTTCATA
1 CATAACTTA
*
45475168 TCATAATTTA
1 -CATAACTTA
45475178 CATAACTTA
1 CATAACTTA
45475187 CATAACTTA
1 CATAACTTA
* *
45475196 TAAAACTTA
1 CATAACTTA
*
45475205 AATAA--TA
1 CATAACTTA
* *
45475212 AATAA-ATA
1 CATAACTTA
*
45475220 TATAACTTA
1 CATAACTTA
*
45475229 CATAGCTTA
1 CATAACTTA
*
45475238 CGTAA--TA
1 CATAACTTA
*
45475245 CATAA-ATA
1 CATAACTTA
* ** *
45475253 TATTTCATA
1 CATAACTTA
*
45475262 TCATAATTTA
1 -CATAACTTA
45475272 CATAACTTA
1 CATAACTTA
*
45475281 CATACCTTA
1 CATAACTTA
*
45475290 CATAAATTTATA
1 CAT-AA-CT-TA
* *
45475302 TCATATCATA
1 -CATAACTTA
45475312 TCATAACTTA
1 -CATAACTTA
45475322 CATAACTTA
1 CATAACTTA
*
45475331 CAAAACTTA
1 CATAACTTA
*
45475340 CTTAACTTA
1 CATAACTTA
45475349 C
1 C
45475350 GTAATACATA
Statistics
Matches: 194, Mismatches: 49, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
7 26 0.13
8 20 0.10
9 122 0.63
10 19 0.10
11 1 0.01
12 3 0.02
13 3 0.02
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:45475131 original size:33 final size:33
Alignment explanation
Indices: 45475094--45475255 Score: 147
Period size: 33 Copynumber: 5.1 Consensus size: 33
45475084 CATAACTTAC
*
45475094 ATAACTTACAAAACTTACATAATACATAAATAT
1 ATAACTTACATAACTTACATAATACATAAATAT
* *
45475127 ATAACTTCCATAACTTACGTAATACATAAATAT
1 ATAACTTACATAACTTACATAATACATAAATAT
* * * * *
45475160 AT---TT-CATATCATA-AT-TTACATAACTTAC
1 ATAACTTACATAACTTACATAATACATAA-ATAT
* * * *
45475188 ATAACTTATAAAACTTAAATAATAAATAAATAT
1 ATAACTTACATAACTTACATAATACATAAATAT
* *
45475221 ATAACTTACATAGCTTACGTAATACATAAATAT
1 ATAACTTACATAACTTACATAATACATAAATAT
45475254 AT
1 AT
45475256 TTCATATCAT
Statistics
Matches: 99, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
27 7 0.07
28 5 0.05
29 7 0.07
30 2 0.02
31 2 0.02
32 5 0.05
33 65 0.66
34 6 0.06
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (33 bp):
ATAACTTACATAACTTACATAATACATAAATAT
Found at i:45475238 original size:94 final size:94
Alignment explanation
Indices: 45475084--45475331 Score: 367
Period size: 94 Copynumber: 2.6 Consensus size: 94
45475074 TATATCATAT
* * *
45475084 CATAACTTACATAACTTACAAAACTTACATAATACATAAATATATAACTTCCATAACTTACGTAA
1 CATAACTTACATAACTTACAAAACTTAAATAATAAATAAATATATAACTTACATAACTTACGTAA
45475149 TACATAAATATATTTCATATCATAATTTA
66 TACATAAATATATTTCATATCATAATTTA
* *
45475178 CATAACTTACATAACTTATAAAACTTAAATAATAAATAAATATATAACTTACATAGCTTACGTAA
1 CATAACTTACATAACTTACAAAACTTAAATAATAAATAAATATATAACTTACATAACTTACGTAA
45475243 TACATAAATATATTTCATATCATAATTTA
66 TACATAAATATATTTCATATCATAATTTA
* * * * *
45475272 CATAACTTACATACCTTACATAAATTTATATCAT--AT-CATATCATAACTTACATAACTTAC
1 CATAACTTACATAACTTACA-AAACTTAAATAATAAATAAATAT-ATAACTTACATAACTTAC
45475332 AAAACTTACT
Statistics
Matches: 140, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
92 4 0.03
93 19 0.14
94 107 0.76
95 10 0.07
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (94 bp):
CATAACTTACATAACTTACAAAACTTAAATAATAAATAAATATATAACTTACATAACTTACGTAA
TACATAAATATATTTCATATCATAATTTA
Found at i:45475331 original size:41 final size:44
Alignment explanation
Indices: 45475068--45475332 Score: 219
Period size: 43 Copynumber: 6.0 Consensus size: 44
45475058 ATCTTAATGT
*
45475068 TAAATATATATCATATCATAACTTACATAACTTACAAAACTTACA
1 TAAATATATATCATATCATAA-TTACATAACTTACATAACTTACA
* * * *
45475113 T-AATACATA-AATAT-ATAACTTCCATAACTTACGTAA--TACA
1 TAAATATATATCATATCATAA-TTACATAACTTACATAACTTACA
* *
45475153 TAAATATATTTCATATCATAATTTACATAACTTACATAACTTATAAAACT
1 TAAATATATATCATATCATAA-TTACATAACTTACATAAC-T-T---ACA
* * * *
45475203 TAAATAATAAATAAATAT-ATAACTTACATAGCTTACGTAA--TACA
1 TAAAT-ATATAT-CATATCATAA-TTACATAACTTACATAACTTACA
* *
45475247 TAAATATATTTCATATCATAATTTACATAACTTACATACCTTACA
1 TAAATATATATCATATCATAA-TTACATAACTTACATAACTTACA
*
45475292 TAAATTTATATCATATCAT-A-T-CATAACTTACATAACTTACA
1 TAAATATATATCATATCATAATTACATAACTTACATAACTTACA
45475333 AAACTTACTT
Statistics
Matches: 176, Mismatches: 29, Indels: 34
0.74 0.12 0.14
Matches are distributed among these distances:
40 5 0.03
41 25 0.14
42 28 0.16
43 45 0.26
44 15 0.09
45 22 0.12
47 2 0.01
50 7 0.04
51 23 0.13
52 4 0.02
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.36
Consensus pattern (44 bp):
TAAATATATATCATATCATAATTACATAACTTACATAACTTACA
Found at i:45480975 original size:21 final size:21
Alignment explanation
Indices: 45480906--45480981 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
45480896 ACTTAGAGCG
*
45480906 GAGGCAGCAGAGAGGGAGGTA
1 GAGGCAGCAGCGAGGGAGGTA
* * *
45480927 GCGGCAACAGCGAGAGAGGTA
1 GAGGCAGCAGCGAGGGAGGTA
*
45480948 GTGGCAGCAGCGAGGGAGGTA
1 GAGGCAGCAGCGAGGGAGGTA
*
45480969 GAGGCAGTAGCGA
1 GAGGCAGCAGCGA
45480982 TGGCAGCAGA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.30, C:0.14, G:0.49, T:0.07
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGTA
Found at i:45481274 original size:31 final size:31
Alignment explanation
Indices: 45481224--45481289 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
45481214 TGTATTTTTT
* *
45481224 ATGCTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGCTACATTTGCTATTTTTGGTTGGATTTA
* *
45481255 ATGCTATATTTTCTATTTTTGGTTGGATTTA
1 ATGCTACATTTGCTATTTTTGGTTGGATTTA
45481286 ATGC
1 ATGC
45481290 AGGAATGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.53
Consensus pattern (31 bp):
ATGCTACATTTGCTATTTTTGGTTGGATTTA
Found at i:45489970 original size:42 final size:41
Alignment explanation
Indices: 45489890--45490039 Score: 155
Period size: 41 Copynumber: 3.6 Consensus size: 41
45489880 GAGCTTGGTC
45489890 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
45489931 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * *
45489973 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTT-GATC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAG-TT
*
45490014 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
45490040 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
39 4 0.04
40 10 0.11
41 36 0.40
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:45490022 original size:41 final size:40
Alignment explanation
Indices: 45489870--45490039 Score: 145
Period size: 41 Copynumber: 4.2 Consensus size: 40
45489860 GCTAATCGGG
*
45489870 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTGATCTCGAAGGGCTTTTGAGCCAGT
* *
45489911 G-CTAATAACCGAACTT-AGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTGA-TCTCGAAGGGC-TTTT-GAGCCAGT
* * *
45489954 GTCATAA-CCG-GACTTAGTTC-CGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTT-GATCTCGAAGGGCTTTTGAGCCAGT
*
45489994 AGTCTAATCCGAGCTTGATCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTGATCTCGAAGGGCTTTTGAGCCAGT
45490035 G-CTAA
1 GTCTAA
45490040 GAGTCGGACT
Statistics
Matches: 103, Mismatches: 12, Indels: 30
0.71 0.08 0.21
Matches are distributed among these distances:
39 7 0.07
40 17 0.17
41 46 0.45
42 19 0.18
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTGATCTCGAAGGGCTTTTGAGCCAGT
Done.