Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 146 of 332
Found at i:47923987 original size:81 final size:80
Alignment explanation
Indices: 47923792--47923974 Score: 228
Period size: 81 Copynumber: 2.3 Consensus size: 80
47923782 TTCTACCCTA
* *
47923792 CAAGGGTATTTTAGTAATTCTAC--CCTATAGGGGTATTTCGGTATTTTACAAATCAGGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAACTA-A-GGGTATTTCGGTATTTTACAAATCAGGGGTATT
47923855 TTGGTAATTTTACAAAC
64 TTGGTAATTTTACAAAC
* * * **
47923872 TAGGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACTGATC-GAGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGT-ATTTTACAAATCAG-GGGTATT
**
47923936 TTGGTAATTTTGTAAAC
64 TTGGTAATTTTACAAAC
47923953 CAAGGGTATTTTAGTAATTTTA
1 CAAGGGTATTTTAGTAATTTTA
47923975 TAAATCGAGG
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
80 32 0.36
81 53 0.60
82 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (80 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCGGTATTTTACAAATCAGGGGTATTTT
GGTAATTTTACAAAC
Found at i:47923996 original size:27 final size:27
Alignment explanation
Indices: 47923966--47924038 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
47923956 GGGTATTTTA
* *
47923966 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATTGAGGGTAAAACG
*
47923993 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATTGAGGGTAAAACG
47924020 GTAATTCTATAAATTGAGG
1 GTAATTCTATAAATTGAGG
47924039 ATATTTGGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATTGAGGGTAAAACG
Found at i:47923996 original size:54 final size:54
Alignment explanation
Indices: 47923885--47924005 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
47923875 GGGTATTTTA
** * * * ****
47923885 GTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTG
1 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACTAATCGAGGGTAAAACG
47923939 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTA-TAAATCGAGGGTAAAACG
1 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACT-AATCGAGGGTAAAACG
*
47923993 GTAATTCTGTAAA
1 GTAATTTTGTAAA
47924006 TTGAGGGTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (54 bp):
GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACTAATCGAGGGTAAAACG
Found at i:47923996 original size:81 final size:81
Alignment explanation
Indices: 47923848--47923998 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
47923838 TACAAATCAG
* * ****
47923848 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAAGGGTAAAACGG
47923913 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
** * *
47923929 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAA-TCGAGGGTAAAACG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACT-AAGGGTAAAACG
47923993 GTAATT
65 GTAATT
47923999 CTGTAAATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAAGGGTAAAACGG
TAATTTTACTGATCGA
Found at i:47927015 original size:15 final size:15
Alignment explanation
Indices: 47926995--47927023 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47926985 GTATTGTTGC
47926995 TTGATAACACGATGA
1 TTGATAACACGATGA
47927010 TTGATAACACGATG
1 TTGATAACACGATG
47927024 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGATAACACGATGA
Found at i:47930108 original size:43 final size:43
Alignment explanation
Indices: 47930057--47930138 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
47930047 AAAAAATGTC
* *
47930057 GCTAAAAGTCATGGCTTTTAGTGCCATTTGTGGAAAAAGCGCA
1 GCTAAAAGTCATGGCTTTTAGCGACATTTGTGGAAAAAGCGCA
* *
47930100 GCTAAAAGTCATGGCTTTTAGCGACGTTTGTGGGAAAAG
1 GCTAAAAGTCATGGCTTTTAGCGACATTTGTGGAAAAAG
47930139 AAAACGCCGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (43 bp):
GCTAAAAGTCATGGCTTTTAGCGACATTTGTGGAAAAAGCGCA
Found at i:47930245 original size:31 final size:31
Alignment explanation
Indices: 47930200--47930269 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
47930190 AACCCTTCCT
*
47930200 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATAAAATCCAACCAAAAACAGCAAATATA
* * *
47930231 GCATAAAATGCAACCAAAATCAGCAAATTTA
1 GCATAAAATCCAACCAAAAACAGCAAATATA
47930262 GCATAAAA
1 GCATAAAA
47930270 AAAGAACCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.54, C:0.20, G:0.09, T:0.17
Consensus pattern (31 bp):
GCATAAAATCCAACCAAAAACAGCAAATATA
Found at i:47931041 original size:13 final size:14
Alignment explanation
Indices: 47931015--47931043 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
47931005 ACTAATGACG
47931015 AATTAAACCATTAT
1 AATTAAACCATTAT
47931029 AATTAAA-CATTAT
1 AATTAAACCATTAT
47931042 AA
1 AA
47931044 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:47935167 original size:19 final size:19
Alignment explanation
Indices: 47935122--47935164 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
47935112 AGAATCGGTC
* *
47935122 GTCTTTGATGACATGAATA
1 GTCTTTGACGACATGAAAA
47935141 GTCTTTGACGACATGAAAA
1 GTCTTTGACGACATGAAAA
47935160 G-CTTT
1 GTCTTT
47935165 TGAAGTCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (19 bp):
GTCTTTGACGACATGAAAA
Found at i:47936209 original size:9 final size:9
Alignment explanation
Indices: 47936188--47936294 Score: 62
Period size: 9 Copynumber: 12.1 Consensus size: 9
47936178 TATGTATTAC
*
47936188 GTAAGTTAA
1 GTAAGTTAT
47936197 GTAAGCTT-T
1 GTAAG-TTAT
47936206 GTAAGTTAT
1 GTAAGTTAT
47936215 GTAAGTTAT
1 GTAAGTTAT
* *
47936224 GTTA-TGAT
1 GTAAGTTAT
* *
47936232 ATACATTTAT
1 GTA-AGTTAT
*
47936242 GTAAGGTAT
1 GTAAGTTAT
47936251 GTAAGTTAT
1 GTAAGTTAT
* *
47936260 GATATGATAT
1 G-TAAGTTAT
* *
47936270 AT-ATTTAT
1 GTAAGTTAT
47936278 GT-A-TTAT
1 GTAAGTTAT
47936285 GTAAGTTAT
1 GTAAGTTAT
47936294 G
1 G
47936295 ATATGATATA
Statistics
Matches: 74, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
7 6 0.08
8 12 0.16
9 43 0.58
10 13 0.18
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:47936252 original size:36 final size:36
Alignment explanation
Indices: 47936205--47936365 Score: 204
Period size: 34 Copynumber: 4.5 Consensus size: 36
47936195 AAGTAAGCTT
* *
47936205 TGTAAGTTATGTAAGTTATGTTATGATATACATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
*
47936241 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
47936277 TGT-A-TTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
* * *
47936311 TGATATATATTTATGTAAGTTATTATCTGATATATATTTA
1 TG---TA-AGTTATGTAAGTTATGATATGATATATATTTA
47936351 TGT-A-TTATGTAAGTT
1 TGTAAGTTATGTAAGTT
47936366 TTGTAAGTTT
Statistics
Matches: 113, Mismatches: 6, Indels: 14
0.85 0.05 0.11
Matches are distributed among these distances:
34 42 0.37
35 2 0.02
36 36 0.32
37 2 0.02
39 1 0.01
40 30 0.27
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATGATATGATATATATTTA
Found at i:47936293 original size:70 final size:72
Alignment explanation
Indices: 47936211--47936365 Score: 224
Period size: 74 Copynumber: 2.2 Consensus size: 72
47936201 GCTTTGTAAG
*
47936211 TTATGTAAGTTATGTTATGATATACATTTATG-TA-AGGTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGATATGATATACATTTATGATATAGGTATGTAAGTTATGATATGATATATAT
47936274 TTATGTA
66 TTATGTA
* ** * *
47936281 TTATGTAAGTTATGATATGATATATATTTATGATATATATTTATGTAAGTTATTATCTGATATAT
1 TTATGTAAGTTATGATATGATATACATTTATG--ATATAGGTATGTAAGTTATGATATGATATAT
47936346 ATTTATGTA
64 ATTTATGTA
47936355 TTATGTAAGTT
1 TTATGTAAGTT
47936366 TTGTAAGTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 30 0.40
73 2 0.03
74 43 0.57
ACGTcount: A:0.34, C:0.01, G:0.15, T:0.50
Consensus pattern (72 bp):
TTATGTAAGTTATGATATGATATACATTTATGATATAGGTATGTAAGTTATGATATGATATATAT
TTATGTA
Found at i:47936314 original size:13 final size:13
Alignment explanation
Indices: 47936296--47936352 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
47936286 TAAGTTATGA
47936296 TATGATATATATT
1 TATGATATATATT
47936309 TATGATATATATT
1 TATGATATATATT
47936322 TATG-TA-AGTTATT
1 TATGATATA--TATT
*
47936335 ATCTGATATATATT
1 -TATGATATATATT
47936349 TATG
1 TATG
47936353 TATTATGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 1 0.03
12 2 0.05
13 24 0.65
14 7 0.19
15 2 0.05
16 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:47936372 original size:9 final size:9
Alignment explanation
Indices: 47936358--47936383 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
47936348 TTATGTATTA
47936358 TGTAAGTTT
1 TGTAAGTTT
47936367 TGTAAGTTT
1 TGTAAGTTT
47936376 TGTAAGTT
1 TGTAAGTT
47936384 ATTATATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (9 bp):
TGTAAGTTT
Found at i:47941699 original size:47 final size:47
Alignment explanation
Indices: 47941645--47942247 Score: 1037
Period size: 47 Copynumber: 12.7 Consensus size: 47
47941635 TTAGGATTCT
* * *
47941645 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
47941692 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47941739 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47941786 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
47941833 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAAGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
47941882 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47941929 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
47941978 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47942025 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47942072 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47942119 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
47942166 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
47942213 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
47942248 TCCCGAAGGG
Statistics
Matches: 534, Mismatches: 17, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 440 0.82
49 93 0.17
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:47942422 original size:37 final size:37
Alignment explanation
Indices: 47942366--47942444 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
47942356 CCGAGCTCTA
* * *
47942366 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
47942403 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
47942440 AAGAC
1 AAGAC
47942445 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:47944401 original size:8 final size:8
Alignment explanation
Indices: 47944382--47944410 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
47944372 TAATGTTTAT
47944382 GTTTAA-G
1 GTTTAAGG
47944389 GTTTAAGG
1 GTTTAAGG
47944397 GTTTAAGG
1 GTTTAAGG
47944405 GTTTAA
1 GTTTAA
47944411 TTAAACCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (8 bp):
GTTTAAGG
Found at i:47944852 original size:41 final size:41
Alignment explanation
Indices: 47944796--47944956 Score: 173
Period size: 41 Copynumber: 3.9 Consensus size: 41
47944786 AACCTTTTGT
*
47944796 GGTG-TTTGGACCAAAAACGCCACTATTTCTCAGTTTTTAGC
1 GGTGTTTTGGA-CAAAAACGCCACTATTGCTCAGTTTTTAGC
** * *
47944837 GGCATTTTGGACAAAAATGCCACTATTGCTCAGTTTTTTGC
1 GGTGTTTTGGACAAAAACGCCACTATTGCTCAGTTTTTAGC
* * * * *
47944878 GGTGTTTTGGATAAAAACGGCACTACTGCTCGGTTTTTCA-T
1 GGTGTTTTGGACAAAAACGCCACTATTGCTCAGTTTTT-AGC
* * *
47944919 GGTGTTTTGGATAAAAATGCCACTATTACTCAGTTTTT
1 GGTGTTTTGGACAAAAACGCCACTATTGCTCAGTTTTT
47944957 CGTTGCGTTT
Statistics
Matches: 99, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 93 0.94
42 6 0.06
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37
Consensus pattern (41 bp):
GGTGTTTTGGACAAAAACGCCACTATTGCTCAGTTTTTAGC
Found at i:47944914 original size:82 final size:82
Alignment explanation
Indices: 47944790--47944956 Score: 203
Period size: 82 Copynumber: 2.0 Consensus size: 82
47944780 TAGCTCAACC
* * *
47944790 TTTTGTGGTGTTTGGACCAAAAACGCCACTATTTCTCAGTTTTT-AGCGGCATTTTGGACAAAAA
1 TTTTGCGGTGTTTGGACCAAAAACGCCACTACTGCTCAGTTTTTCA-CGGCATTTTGGACAAAAA
*
47944854 TGCCACTATTGCTCAGTT
65 TGCCACTATTACTCAGTT
* * * * ** *
47944872 TTTTGCGGTGTTTTGGA-TAAAAACGGCACTACTGCTCGGTTTTTCATGGTGTTTTGGATAAAAA
1 TTTTGCGGTG-TTTGGACCAAAAACGCCACTACTGCTCAGTTTTTCACGGCATTTTGGACAAAAA
47944936 TGCCACTATTACTCAGTT
65 TGCCACTATTACTCAGTT
47944954 TTT
1 TTT
47944957 CGTTGCGTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
82 65 0.90
83 7 0.10
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.39
Consensus pattern (82 bp):
TTTTGCGGTGTTTGGACCAAAAACGCCACTACTGCTCAGTTTTTCACGGCATTTTGGACAAAAAT
GCCACTATTACTCAGTT
Found at i:47945720 original size:26 final size:26
Alignment explanation
Indices: 47945690--47945751 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
47945680 ATCCTCTCTC
47945690 AAGCCATATAA-CAGGAAGCTCACAAA
1 AAGCCAT-TAATCAGGAAGCTCACAAA
* *
47945716 GAGCCATTAATCGGGAAGCTCACAAA
1 AAGCCATTAATCAGGAAGCTCACAAA
47945742 AAGCCTATTA
1 AAGCC-ATTA
47945752 GGAAGCTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.10
26 24 0.77
27 4 0.13
ACGTcount: A:0.44, C:0.23, G:0.18, T:0.16
Consensus pattern (26 bp):
AAGCCATTAATCAGGAAGCTCACAAA
Found at i:47947285 original size:93 final size:94
Alignment explanation
Indices: 47947091--47947448 Score: 351
Period size: 93 Copynumber: 3.8 Consensus size: 94
47947081 TGATTTGTGC
* * * * * *
47947091 GCCAGTGTAAGACGTGTCTGGGACATGCTTCGGCCACATTATGAGGGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
* * * * ** *
47947156 TGGGGCATGGTATCGACATC-CAGACGAGG
66 TGGGACATGGCATCGGCA-CAGAGATTAGT
* * *
47947185 GCTAGTGTAAGACAT-TTTGGGACATGCATCAGCCATACTATGACAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
*
47947249 TGGGACATGGCACCGGCACAGAGATTAGT
66 TGGGACATGGCATCGGCACAGAGATTAGT
* *
47947278 ACCAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGAC-A-GAGATAGCCAGTGTAAGA-CG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCA
*
47947339 TGTCTGGGACA-CGCATCGGCTA-AGAG-TT-GT
62 TGTCTGGGACATGGCATCGGC-ACAGAGATTAGT
* *
47947369 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCAT
*
47947433 GTCTGAGACATGGCAT
63 GTCTGGGACATGGCAT
47947449 GAGCAATATA
Statistics
Matches: 220, Mismatches: 29, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
91 33 0.15
92 16 0.07
93 102 0.46
94 53 0.24
95 16 0.07
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (94 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCACAGAGATTAGT
Found at i:47947388 original size:44 final size:45
Alignment explanation
Indices: 47947091--47947399 Score: 184
Period size: 47 Copynumber: 6.7 Consensus size: 45
47947081 TGATTTGTGC
* * * * * *
47947091 GCCAGTGTAAGACGTGTCTGGGACATGCTTCGGCCACATTA-TGAGG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACA-GAGT-TGT
* * * * * *
47947137 GCCAGTGTAAGACCATGTCTGGGGCATGGTATCGACATCCAGACG-AGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACAGA-GTTGT
* * * * * *
47947185 GCTAGTGTAAGACAT-TTTGGGACATGCATCAGC--CATACTATGACA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGT-TG--T
*
47947230 GCCAGTGTAAGACCATGTCTGGGACATGGCACCGGC-ACAGAGATTAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAGAG-TT-GT
* * * *
47947278 ACCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGAT-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCT--ACAGAGTTGT
* *
47947325 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGT
*
47947369 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
47947400 AGCACGCGTA
Statistics
Matches: 204, Mismatches: 39, Indels: 42
0.72 0.14 0.15
Matches are distributed among these distances:
42 3 0.01
43 6 0.03
44 29 0.14
45 16 0.08
46 30 0.15
47 68 0.33
48 37 0.18
49 7 0.03
50 8 0.04
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGT
Found at i:47952310 original size:29 final size:29
Alignment explanation
Indices: 47952240--47952441 Score: 142
Period size: 29 Copynumber: 7.0 Consensus size: 29
47952230 TGTGCTAAAA
* * *
47952240 GATGGTCATAACCGTCCCTTTTCATTAATC
1 GATGGTCGTAACCATCCCTTTTCA-TAATT
* * *
47952270 GATGGTCATCACCATCCCTTTTCATAGTT
1 GATGGTCGTAACCATCCCTTTTCATAATT
* *
47952299 GATGGTCGTCACCATCCTTTTTCATAATT
1 GATGGTCGTAACCATCCCTTTTCATAATT
*** * * *
47952328 GATACCCG-AAGCTATCCCTTTCCATAATC
1 GATGGTCGTAA-CCATCCCTTTTCATAATT
** ** *
47952357 GAT-AACCAAAGCTATCCCTTTTCAT-ATT
1 GATGGTCGTAA-CCATCCCTTTTCATAATT
*
47952385 CGATGGTCGT-ACCATCCCTTTTCATAGTT
1 -GATGGTCGTAACCATCCCTTTTCATAATT
* *
47952414 GATGGTCGTCACTATCCCTTTTCATAAT
1 GATGGTCGTAACCATCCCTTTTCATAAT
47952442 CGATAGCCGA
Statistics
Matches: 138, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
28 26 0.19
29 89 0.64
30 23 0.17
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (29 bp):
GATGGTCGTAACCATCCCTTTTCATAATT
Found at i:47952457 original size:29 final size:29
Alignment explanation
Indices: 47952312--47952525 Score: 189
Period size: 29 Copynumber: 7.4 Consensus size: 29
47952302 GGTCGTCACC
* * *
47952312 ATCCTTTTTCATAATTGATACCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
47952341 ATCCCTTTCCATAATCGATAACCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * *
47952370 ATCCCTTTTCATATTCGATGGTCGTA-CC
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * *
47952398 ATCCCTTTTCATAGTTGATGGTCGTCA-CT
1 ATCCCTTTTCATAATCGATAGCCG-AAGCT
*
47952427 ATCCCTTTTCATAATCGATAGCCGAGGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * *
47952456 ATCTCTTTCCATAATCAATAGCCGAGGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
47952485 ATCCCTTTTCATATTTGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
47952514 ATCCCTTTTCAT
1 ATCCCTTTTCAT
47952526 TGGTCGTTGA
Statistics
Matches: 150, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
28 23 0.15
29 127 0.85
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:47952486 original size:115 final size:116
Alignment explanation
Indices: 47952254--47952499 Score: 368
Period size: 115 Copynumber: 2.1 Consensus size: 116
47952244 GTCATAACCG
* *
47952254 TCCCTTTTCATTAATCGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCTTT
1 TCCCTTTTCA-TATTCGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTT
* *
47952319 TTCATAATTGATACCCGAAGCTATCCCTTTCCATAATCGATAACCAAAGCTA
65 TTCATAATCGATACCCGAAGCTATCCCTTTCCATAATCAATAACCAAAGCTA
* *
47952371 TCCCTTTTCATATTCGATGGTCGT-ACCATCCCTTTTCATAGTTGATGGTCGTCACTATCCCTTT
1 TCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTT
* * * * * *
47952435 TCATAATCGATAGCCGAGGCTATCTCTTTCCATAATCAATAGCCGAGGCTA
66 TCATAATCGATACCCGAAGCTATCCCTTTCCATAATCAATAACCAAAGCTA
47952486 TCCCTTTTCATATT
1 TCCCTTTTCATATT
47952500 TGATAGCCAA
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
115 95 0.81
116 12 0.10
117 10 0.09
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (116 bp):
TCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTT
TCATAATCGATACCCGAAGCTATCCCTTTCCATAATCAATAACCAAAGCTA
Found at i:47988034 original size:25 final size:25
Alignment explanation
Indices: 47988001--47988049 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
47987991 ATGTGAAAGG
*
47988001 GGGTTGCTATGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
47988026 GGGTTGCTAAGTGCTGATTCCCCG
1 GGGTTGCTAAGTGCTGATTCCCCG
47988050 GTTCATTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47988132 original size:102 final size:102
Alignment explanation
Indices: 47987934--47988141 Score: 332
Period size: 102 Copynumber: 2.0 Consensus size: 102
47987924 GGTTGCTTGT
* *
47987934 GTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTTTGAAATGTGAAA
1 GTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAA
47987999 GGGGGTTGCTATGTGCTGATTCCCCGAGGGTTGCTAA
66 GGGGGTTGCTATGTGCTGATTCCCCGAGGGTTGCTAA
* *
47988036 GTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTG-AA-GTGAA
1 GTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCTTTGAAATGTGAA
47988098 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
65 AGGGGGTTGCTATGTGCTGATT-CCCCGA-GGGTTGCTAA
47988138 GTGC
1 GTGC
47988142 GATATCCATT
Statistics
Matches: 99, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
100 27 0.27
101 8 0.08
102 63 0.64
103 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (102 bp):
GTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAA
GGGGGTTGCTATGTGCTGATTCCCCGAGGGTTGCTAA
Found at i:47988161 original size:70 final size:70
Alignment explanation
Indices: 47988062--47988210 Score: 244
Period size: 70 Copynumber: 2.1 Consensus size: 70
47988052 TCATTGGTGG
* * *
47988062 TGCTAAGTGCGATATCCACCATATCTTTGAAGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCCGA
47988127 GGGGT
66 GGGGT
***
47988132 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCCGA
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCCGA
47988197 GGGGT
66 GGGGT
47988202 TGCTAAGTG
1 TGCTAAGTG
47988211 ATGATTCCCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (70 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAAGGGGTTGCTATGTGCTGATTCCCCCGA
GGGGT
Found at i:47989143 original size:29 final size:28
Alignment explanation
Indices: 47989101--47989160 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
47989091 TGGTTATAGT
47989101 GACTTCCAACAAC-TCGGAAAATTGGAAAC
1 GACTTCCAACAACTTCGG-AAATTGG-AAC
47989130 GACTTCCAACAACTTCGGAAATTGGAAC
1 GACTTCCAACAACTTCGGAAATTGGAAC
47989158 GAC
1 GAC
47989161 ATTACTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 6 0.20
29 20 0.67
30 4 0.13
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (28 bp):
GACTTCCAACAACTTCGGAAATTGGAAC
Found at i:47996373 original size:29 final size:29
Alignment explanation
Indices: 47996310--47996377 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
47996300 TAATCAACCA
47996310 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
47996339 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
47996368 CGCACACTTA
1 CGCACACTTA
47996378 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:47996518 original size:29 final size:30
Alignment explanation
Indices: 47996479--47996557 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
47996469 CTTAATAATC
47996479 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
47996509 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
47996538 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
47996558 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:48003377 original size:18 final size:20
Alignment explanation
Indices: 48003342--48003384 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
48003332 TGATTAAGAT
48003342 ATGATTTTTGATCCGTTTTTG
1 ATGATTTTTGAT-CGTTTTTG
48003363 ATGATTTTT-AT-GTTTTTG
1 ATGATTTTTGATCGTTTTTG
48003381 -TGAT
1 ATGAT
48003385 CGTTGCTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.18
18 7 0.32
20 2 0.09
21 9 0.41
ACGTcount: A:0.16, C:0.05, G:0.19, T:0.60
Consensus pattern (20 bp):
ATGATTTTTGATCGTTTTTG
Found at i:48005763 original size:18 final size:18
Alignment explanation
Indices: 48005742--48005813 Score: 51
Period size: 18 Copynumber: 3.9 Consensus size: 18
48005732 TAGTATATGT
48005742 ATTATTAATATTTTATTA
1 ATTATTAATATTTTATTA
48005760 ATTA--AATATTTTTAATGT-
1 ATTATTAATA-TTTT-AT-TA
* *
48005778 ATGTATTATTATTTTTTTA
1 AT-TATTAATATTTTATTA
*
48005797 GTTATTAATATTATTAT
1 ATTATTAATATT-TTAT
48005814 ATTATTATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 15
0.67 0.08 0.25
Matches are distributed among these distances:
16 4 0.10
17 4 0.10
18 18 0.44
19 8 0.20
20 4 0.10
21 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (18 bp):
ATTATTAATATTTTATTA
Found at i:48010237 original size:11 final size:10
Alignment explanation
Indices: 48010209--48010242 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
48010199 AGCTTGTAAG
48010209 TATTCTGAAT
1 TATTCTGAAT
*
48010219 TTTTCTGAAT
1 TATTCTGAAT
48010229 ATATTCTGAAT
1 -TATTCTGAAT
48010240 TAT
1 TAT
48010243 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:48016950 original size:27 final size:27
Alignment explanation
Indices: 48016910--48017022 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
48016900 AGGAAGCGTC
*
48016910 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
48016937 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
48016964 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
48016992 CTAGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
48017018 CTGGT
1 CTGGT
48017023 AGCCATGCTG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:48017016 original size:54 final size:54
Alignment explanation
Indices: 48016910--48017022 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
48016900 AGGAAGCGTC
* * *
48016910 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * *
48016964 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
48017018 CTGGT
1 CTGGT
48017023 AGCCATGCTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:48020631 original size:32 final size:32
Alignment explanation
Indices: 48020570--48020658 Score: 83
Period size: 32 Copynumber: 2.8 Consensus size: 32
48020560 ACTAAGTGTG
**
48020570 TATATATGTGTAGTTGGATAAAGTTGAATGTC
1 TATATATGTGTAGTTGGATAAAGCCGAATGTC
*
48020602 TATATATGTGT-GATTGGATATAA-CCGAATGTG
1 TATATATGTGTAG-TTGGATA-AAGCCGAATGTC
* * * *
48020634 TATCTAGGTGTAGTTTGATATAGCC
1 TATATATGTGTAGTTGGATAAAGCC
48020659 TATTAAGATG
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
31 2 0.04
32 41 0.89
33 3 0.07
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (32 bp):
TATATATGTGTAGTTGGATAAAGCCGAATGTC
Found at i:48020826 original size:26 final size:26
Alignment explanation
Indices: 48020797--48020887 Score: 103
Period size: 26 Copynumber: 3.5 Consensus size: 26
48020787 TTTGAGGGAT
48020797 GCACTAAGTGTGCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAGTTGGATTTAA
* * * * *
48020823 GCACTATGTGTGTGAATT-AATTTTTGA
1 GCACTAAGTGTGCGAGTTGGA--TTTAA
48020850 GCACTAAGTGTGCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAGTTGGATTTAA
*
48020876 GCACTATGTGTG
1 GCACTAAGTGTG
48020888 TGAATTAATT
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.02
26 30 0.59
27 19 0.37
28 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.29, T:0.35
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGTTGGATTTAA
Found at i:48020854 original size:27 final size:27
Alignment explanation
Indices: 48020822--48020908 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
48020812 GTTGGATTTA
48020822 AGCACTATGTGTGTGAATTAATTTTTG
1 AGCACTATGTGTGTGAATTAATTTTTG
* * * * *
48020849 AGCACTAAGTGTGCGAGTTGGA--TTTA
1 AGCACTATGTGTGTGAATT-AATTTTTG
*
48020875 AGCACTATGTGTGTGAATTAATTTCTG
1 AGCACTATGTGTGTGAATTAATTTTTG
48020902 AGCACTA
1 AGCACTA
48020909 AGTGGAAATC
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
25 1 0.02
26 19 0.41
27 25 0.54
28 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (27 bp):
AGCACTATGTGTGTGAATTAATTTTTG
Found at i:48020872 original size:53 final size:53
Alignment explanation
Indices: 48020797--48020912 Score: 223
Period size: 53 Copynumber: 2.2 Consensus size: 53
48020787 TTTGAGGGAT
*
48020797 GCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTTTGA
1 GCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGA
48020850 GCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGA
1 GCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGA
48020903 GCACTAAGTG
1 GCACTAAGTG
48020913 GAAATCGGTT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 62 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (53 bp):
GCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGA
Found at i:48027388 original size:31 final size:31
Alignment explanation
Indices: 48027353--48027414 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
48027343 ATTTGAAGTA
48027353 AAAATATTTATTTTATTATTTCTTTAAGGTC
1 AAAATATTTATTTTATTATTTCTTTAAGGTC
48027384 AAAATATTTATTTTATTATTTCTTTAAGGTC
1 AAAATATTTATTTTATTATTTCTTTAAGGTC
48027415 TACAGAATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (31 bp):
AAAATATTTATTTTATTATTTCTTTAAGGTC
Found at i:48031379 original size:19 final size:20
Alignment explanation
Indices: 48031355--48031408 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
48031345 TTAAATGATG
48031355 TACTTATATAT-GAGAAATT
1 TACTTATATATGGAGAAATT
* *
48031374 TACTTATGCTATGGATAAATT
1 TACTTAT-ATATGGAGAAATT
*
48031395 CACTTATATCATGG
1 TACTTATAT-ATGG
48031409 TGATGATCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 7 0.25
20 4 0.14
21 17 0.61
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (20 bp):
TACTTATATATGGAGAAATT
Found at i:48046431 original size:96 final size:97
Alignment explanation
Indices: 48046322--48046610 Score: 339
Period size: 96 Copynumber: 3.0 Consensus size: 97
48046312 CCCATAATGG
* * * *
48046322 TGCCGATGCCATGTCCTAAAAATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCC
1 TGCCGATGCCATGTCCCAGAAATGGTCTTATACGGGATCTCATATCGATGCCAATGTCATATCCC
48046387 AGATATGGTCTTACATGGGATCTCATACT-AA
66 AGATATGGTCTTACATGGGATCTCATACTCAA
** * ** * * * * *
48046418 TTTCGATGGCATGTCCCAGACGTGGCCTTATACAGGATATCTTATCGATGCCGATGTCATATCCC
1 TGCCGATGCCATGTCCCAGAAATGGTCTTATACGGGATCTCATATCGATGCCAATGTCATATCCC
* * *
48046483 AGATATGATCTTACACGGGATCTCAT-CTCGA
66 AGATATGGTCTTACATGGGATCTCATACTCAA
* * * * * *
48046514 TGCCGATGCCATATCCCAGATATCGTCTTACACGGGATCTCATTTCGATTCCAATGTCATATCCC
1 TGCCGATGCCATGTCCCAGAAATGGTCTTATACGGGATCTCATATCGATGCCAATGTCATATCCC
*
48046579 AGATATGGTCTTATATGGGATCTCAATACTCA
66 AGATATGGTCTTACATGGGATCTC-ATACTCA
48046611 CATGTCGTGA
Statistics
Matches: 154, Mismatches: 36, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
95 2 0.01
96 147 0.95
97 2 0.01
98 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (97 bp):
TGCCGATGCCATGTCCCAGAAATGGTCTTATACGGGATCTCATATCGATGCCAATGTCATATCCC
AGATATGGTCTTACATGGGATCTCATACTCAA
Found at i:48046599 original size:48 final size:48
Alignment explanation
Indices: 48046322--48046603 Score: 262
Period size: 48 Copynumber: 5.9 Consensus size: 48
48046312 CCCATAATGG
* * * * * * *
48046322 TGCCGATGCCATGTCCTAAAAATGGTCTTATACGGGACCTCATATCGA
1 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTTCGA
* * * *
48046370 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCA-TACTAA
1 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTTC-GA
** * * ** * * * *
48046418 TTTCGATGGCATGTCCCAGACGTGGCCTTATACAGGATATC-TTATCGA
1 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATT-TCGA
* * *
48046466 TGCCGATGTCATATCCCAGATATGATCTTACACGGGATCTCATCTCGA
1 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTTCGA
*
48046514 TGCCGATGCCATATCCCAGATATCGTCTTACACGGGATCTCATTTCGA
1 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTTCGA
* * * * *
48046562 TTCCAATGTCATATCCCAGATATGGTCTTATATGGGATCTCA
1 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCA
48046604 ATACTCACAT
Statistics
Matches: 183, Mismatches: 47, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
47 1 0.01
48 180 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTTCGA
Found at i:48048782 original size:20 final size:20
Alignment explanation
Indices: 48048733--48048782 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
48048723 ATTTGGTGAT
* *
48048733 GAGGTATCAAAACTTGGTAA
1 GAGGTATCAGAACCTGGTAA
48048753 GAGGTATCAGAACCTGGTAA
1 GAGGTATCAGAACCTGGTAA
*
48048773 GAGGTGTCAG
1 GAGGTATCAG
48048783 TACTTTGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (20 bp):
GAGGTATCAGAACCTGGTAA
Found at i:48053053 original size:42 final size:42
Alignment explanation
Indices: 48052994--48053157 Score: 206
Period size: 42 Copynumber: 3.9 Consensus size: 42
48052984 TTAGGGTTAC
* *
48052994 TGAGACTACGTGTAAGACCATATTTGGGATATGGCATCAATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
* *
48053036 TGAGACTTCGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
*
48053078 TGAGACTTCGTGTAAGACCAT-TGCTGGGTTATTGGCATCAATA
1 TGAGACTTCGTGTAAGACCATAT-CTGGGATA-TGGCATCAATA
* * * *
48053121 CGAGA-TTACATATAAGACCATATCTGGGATATAGCAT
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGCAT
48053158 TGGTATGGTA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.01
42 73 0.69
43 31 0.29
44 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:48053141 original size:85 final size:84
Alignment explanation
Indices: 48052994--48053152 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 84
48052984 TTAGGGTTAC
* * * *
48052994 TGAGACTACGTGTAAGACCATATTTGGGATATGGCATCAATATGAGACTTCGTGTAAGACCATAT
1 TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAATACGAGACTTCATATAAGACCATAT
48053059 CTGGGATATGACATCGATA
66 CTGGGATATGACATCGATA
* *
48053078 TGAGACTTCGTGTAAGACCAT-TGCTGGGTTATTGGCATCAATACGAGA-TTACATATAAGACCA
1 TGAGACTACGTGTAAGACCATAT-CTGGGATA-TGGCATCAATACGAGACTT-CATATAAGACCA
48053141 TATCTGGGATAT
63 TATCTGGGATAT
48053153 AGCATTGGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
83 1 0.02
84 28 0.42
85 37 0.56
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (84 bp):
TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAATACGAGACTTCATATAAGACCATAT
CTGGGATATGACATCGATA
Found at i:48070849 original size:61 final size:61
Alignment explanation
Indices: 48070727--48071097 Score: 475
Period size: 62 Copynumber: 6.2 Consensus size: 61
48070717 AAATAGGATT
*
48070727 TTAAATACTAAGAATAATAAACGAAAAAAAAGGAAAGAAAAGAGAAAT-AAAAATGAGTTAAA
1 TTAAATACTAAAAATAATAAACG--AAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
*
48070789 TTGAATACTAAAAATAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
1 TTAAATACTAAAAATAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
* *
48070850 TTAAATACTAAAAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAAGAAAAAATGAATTAAA
1 TTAAATACTAAAAATAATAAACG-AAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
* *
48070912 TTAAATACTAAAAATAATAAACAAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGTT-AA
1 TTAAATACTAAAAATAATAAAC-GAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
* * * * *
48070973 -T-AATA--AACGAA-AATAAA-G--GAAA-G----AAAAGCGAACTAAAAACTGAGTTAAA
1 TTAAATACTAA-AAATAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
* *
48071022 TTAAATACTAAAAAAAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTCAAA
1 TTAAATACTAAAAATAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
48071083 TTAAATACTAAAAAT
1 TTAAATACTAAAAAT
48071098 GGAAAGAAAA
Statistics
Matches: 269, Mismatches: 22, Indels: 37
0.82 0.07 0.11
Matches are distributed among these distances:
48 19 0.07
49 2 0.01
50 1 0.00
51 4 0.01
52 3 0.01
53 11 0.04
54 1 0.00
56 3 0.01
57 9 0.03
58 2 0.01
59 4 0.01
60 24 0.09
61 74 0.28
62 112 0.42
ACGTcount: A:0.67, C:0.05, G:0.13, T:0.16
Consensus pattern (61 bp):
TTAAATACTAAAAATAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
Found at i:48070975 original size:109 final size:109
Alignment explanation
Indices: 48070861--48071129 Score: 373
Period size: 110 Copynumber: 2.5 Consensus size: 109
48070851 TAAATACTAA
* *
48070861 AAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAAGAAAAAATGAATTAAATTAAATACTAAAAA
1 AAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAATTAAATACTAAAAA
*
48070926 TAATAAACAAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGT-
66 AAATAAAC-AAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGTC
* * * *
48070970 TAATAATAAACGAAAATAAAGGAAAGAAAAGCGAACTAAAAACTGAGTTAAATTAAATACTAAAA
1 AAATAATAAACGAAAA-AAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAATTAAATACTAAAA
* *
48071035 AAAATAAACGAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTC
65 AAAATAAACAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGTC
* * * *
48071080 AAATTAA-ATAC-TAAAAATGGAAAGAAAAGAGAAATCAAAAATGAGTTAAA
1 AAA-TAATAAACGAAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAA
48071130 AAGAAAATAA
Statistics
Matches: 140, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
108 30 0.21
109 51 0.36
110 56 0.40
111 3 0.02
ACGTcount: A:0.67, C:0.05, G:0.14, T:0.14
Consensus pattern (109 bp):
AAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGTTAAATTAAATACTAAAAA
AAATAAACAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGTC
Found at i:48070979 original size:47 final size:48
Alignment explanation
Indices: 48070924--48071020 Score: 144
Period size: 48 Copynumber: 2.0 Consensus size: 48
48070914 AAATACTAAA
48070924 AATAATAAAC-AAAAAAAAGGAAAGAAAAGAGAAAC-AAAAAATGAGTT
1 AATAATAAACGAAAAAAAAGGAAAGAAAAGAG-AACTAAAAAATGAGTT
* * *
48070971 AATAATAAACGAAAATAAAGGAAAGAAAAGCGAACTAAAAACTGAGTT
1 AATAATAAACGAAAAAAAAGGAAAGAAAAGAGAACTAAAAAATGAGTT
48071019 AA
1 AA
48071021 ATTAAATACT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
47 13 0.29
48 32 0.71
ACGTcount: A:0.66, C:0.06, G:0.15, T:0.12
Consensus pattern (48 bp):
AATAATAAACGAAAAAAAAGGAAAGAAAAGAGAACTAAAAAATGAGTT
Found at i:48071138 original size:110 final size:108
Alignment explanation
Indices: 48070861--48071129 Score: 364
Period size: 109 Copynumber: 2.5 Consensus size: 108
48070851 TAAATACTAA
* *
48070861 AAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAAGAAAAAATGAATTAAATTAAATACTAAAAA
1 AAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAA-TAAAAATGAGTTAAATTAAATACTAAAAA
*
48070926 TAATAAACAAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGT
65 AAATAAACAAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGT
* * *
48070970 TAATAATAAACGAAAATAAAGGAAAGAAAAGCGAACTAAAAACTGAGTTAAATTAAATACTAAAA
1 AAATAATAAACGAAAA-AAAGGAAAGAAAAGAGAAATAAAAA-TGAGTTAAATTAAATACTAAAA
* *
48071035 AAAATAAAC-GAAAAAAGGAAAGAAAAGAGAAATAAAAAATGAGT
64 AAAATAAACAAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGT
* * *
48071079 CAAATTAA-ATAC-TAAAAATGGAAAGAAAAGAGAAATCAAAAATGAGTTAAA
1 -AAA-TAATAAACGAAAAAAAGGAAAGAAAAGAGAAAT-AAAAATGAGTTAAA
48071130 AAGAAAATAA
Statistics
Matches: 141, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
108 26 0.18
109 61 0.43
110 51 0.36
111 3 0.02
ACGTcount: A:0.67, C:0.05, G:0.14, T:0.14
Consensus pattern (108 bp):
AAATAATAAACGAAAAAAAGGAAAGAAAAGAGAAATAAAAATGAGTTAAATTAAATACTAAAAAA
AATAAACAAAAAAAAGGAAAGAAAAGAGAAACAAAAAATGAGT
Found at i:48072244 original size:17 final size:17
Alignment explanation
Indices: 48072222--48072263 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
48072212 GCTGTACAAA
48072222 TAATATTTTA-ATAGATT
1 TAATATTTTATATA-ATT
*
48072239 TAATATTTTATTTAATT
1 TAATATTTTATATAATT
48072256 TAATATTT
1 TAATATTT
48072264 ATCTTAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TAATATTTTATATAATT
Found at i:48072270 original size:17 final size:16
Alignment explanation
Indices: 48072236--48072332 Score: 67
Period size: 17 Copynumber: 5.8 Consensus size: 16
48072226 ATTTTAATAG
48072236 ATTTAATATTTTATTTA
1 ATTTAATA-TTTATTTA
48072253 ATTTAATATTTATCTTA
1 ATTTAATATTTAT-TTA
*
48072270 A--TAGTATTTA-TTA
1 ATTTAATATTTATTTA
*
48072283 ATTTAATATTAAAGTGGTT-
1 ATTTAATATT-TA-T--TTA
48072302 ATCTTAATATTTAATTTA
1 AT-TTAATATTT-ATTTA
*
48072320 ATTTAATTTTTAT
1 ATTTAATATTTAT
48072333 CTTGTAGATA
Statistics
Matches: 64, Mismatches: 5, Indels: 23
0.70 0.05 0.25
Matches are distributed among these distances:
13 4 0.06
15 14 0.22
16 8 0.12
17 22 0.34
18 2 0.03
19 3 0.05
20 11 0.17
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (16 bp):
ATTTAATATTTATTTA
Found at i:48072367 original size:72 final size:67
Alignment explanation
Indices: 48072238--48072370 Score: 185
Period size: 67 Copynumber: 1.9 Consensus size: 67
48072228 TTTAATAGAT
* *
48072238 TTAATATTTTATTTAATTTAATATTTATCTTAATAGTATTTATTAATTTAATATTAAAGTGGTTA
1 TTAATATTTAATTTAATTTAATATTTATCTTAATAATATTTATTAATTTAATATTAAAGTGGTTA
48072303 TC
66 TC
* *
48072305 TTAATATTTAATTTAATTTAATTTTTATCTTGTAGATAAATATTCTATTAATTTAATGTTAAAGT
1 TTAATATTTAATTTAATTTAATATTTATC-T-TA-AT-AATATT-TATTAATTTAATATTAAAGT
48072370 G
61 G
48072371 ATTAAGTTGA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
67 27 0.47
68 1 0.02
69 2 0.04
70 2 0.04
71 5 0.09
72 20 0.35
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (67 bp):
TTAATATTTAATTTAATTTAATATTTATCTTAATAATATTTATTAATTTAATATTAAAGTGGTTA
TC
Found at i:48073636 original size:27 final size:27
Alignment explanation
Indices: 48073605--48073660 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
48073595 GTTTAGTGGT
*
48073605 ATGTGTAATTAAATTTTGATTAAGTGA
1 ATGTGTAATTAAAATTTGATTAAGTGA
48073632 ATGTGTAATTAAAATTTGATTAAGTGA
1 ATGTGTAATTAAAATTTGATTAAGTGA
48073659 AT
1 AT
48073661 TTAGTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (27 bp):
ATGTGTAATTAAAATTTGATTAAGTGA
Found at i:48073877 original size:3 final size:3
Alignment explanation
Indices: 48073869--48073906 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
48073859 AAGTAGAAGA
48073869 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
48073907 ATGTTAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:48074903 original size:40 final size:39
Alignment explanation
Indices: 48074820--48074911 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 39
48074810 ATTGAGATTG
* ** * **
48074820 ATACTGAACTGAACTATGGGATGCTGAATATTGTTTTGA
1 ATACTGAATTGAACTATGAAATACTGAATATTGTTACGA
*
48074859 ATACTGAATTGAACTATGAAATTACTGAATATTGTTACGT
1 ATACTGAATTGAACTATGAAA-TACTGAATATTGTTACGA
*
48074899 ATACTGCATTGAA
1 ATACTGAATTGAA
48074912 TTGTAAAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 18 0.41
40 26 0.59
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (39 bp):
ATACTGAATTGAACTATGAAATACTGAATATTGTTACGA
Found at i:48074921 original size:40 final size:40
Alignment explanation
Indices: 48074843--48074926 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
48074833 CTATGGGATG
** *
48074843 CTGAATATTGTTTTGAATACTGAATTGAACTATGAAATTA
1 CTGAATATTGTTACGAATACTGAATTGAACTATAAAATTA
* * * * *
48074883 CTGAATATTGTTACGTATACTGCATTGAATTGTAAAATTT
1 CTGAATATTGTTACGAATACTGAATTGAACTATAAAATTA
48074923 CTGA
1 CTGA
48074927 TGAAACGAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (40 bp):
CTGAATATTGTTACGAATACTGAATTGAACTATAAAATTA
Found at i:48075239 original size:45 final size:45
Alignment explanation
Indices: 48075129--48075239 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 45
48075119 ATGTGCCGAC
* * *
48075129 TACTGTTACTATTATTGTTACCGATTCGACACTTTGTGTGTCAAA
1 TACTATTACTGTTATTGTTACCAATTCGACACTTTGTGTGTCAAA
** **
48075174 TACTATTACTGTTACCGTTACCAATTC-AGCACTTTGTGTGTTGAA
1 TACTATTACTGTTATTGTTACCAATTCGA-CACTTTGTGTGTCAAA
**
48075219 TACTATTGTTGTTATTGTTAC
1 TACTATTACTGTTATTGTTAC
48075240 TGCTACCGTT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 53 0.98
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.44
Consensus pattern (45 bp):
TACTATTACTGTTATTGTTACCAATTCGACACTTTGTGTGTCAAA
Found at i:48085255 original size:55 final size:54
Alignment explanation
Indices: 48085147--48085382 Score: 200
Period size: 55 Copynumber: 4.4 Consensus size: 54
48085137 GATGAATTTT
* * * * * *
48085147 CATGGTCTTACGTGGTATCC-T---TT-TGAAACTTACCATTTCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGG
*
48085196 CATGGTCTTACATGGGGTATCCTTGCCTTATG-AACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACAT--GGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGG
* * * * * * *
48085251 CATGGTCTTACAAGGGA-CCTTTGCCTTATAGTAACTTATCAATGTCATGTCTTGA
1 CATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGCCTTGG
* * * *
48085306 CATGCTCTTACATGATATCCTTGCCTTA-GAAACCTTACCAGTTGCCATGCCTCGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCA-ATGCCATGCCTTGG
48085361 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
48085383 AAACCCTAAT
Statistics
Matches: 147, Mismatches: 27, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
49 12 0.08
51 7 0.05
52 3 0.02
53 15 0.10
54 7 0.05
55 99 0.67
56 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGG
Found at i:48097638 original size:22 final size:22
Alignment explanation
Indices: 48097613--48097658 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
48097603 GTTTGGTAGG
48097613 GAATTG-AGTAACAAAAAGATAT
1 GAATTGAAG-AACAAAAAGATAT
* *
48097635 GAATTGAAGAAGAAAAATATAT
1 GAATTGAAGAACAAAAAGATAT
48097657 GA
1 GA
48097659 GTTTAGTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.57, C:0.02, G:0.20, T:0.22
Consensus pattern (22 bp):
GAATTGAAGAACAAAAAGATAT
Found at i:48103187 original size:23 final size:23
Alignment explanation
Indices: 48103158--48103214 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
48103148 TTTTAGGCTT
*
48103158 CATTGCAACTTTCACAACTTTCA
1 CATTGCAACTTTCACAACTTGCA
** *
48103181 TGTTGCAATTTTCACAACTTGCA
1 CATTGCAACTTTCACAACTTGCA
48103204 CATTGCAACTT
1 CATTGCAACTT
48103215 GCAAATCACA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (23 bp):
CATTGCAACTTTCACAACTTGCA
Found at i:48103212 original size:14 final size:14
Alignment explanation
Indices: 48103192--48103233 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
48103182 GTTGCAATTT
48103192 TCACAACTTGCACA
1 TCACAACTTGCACA
** *
48103206 TTGCAACTTGCAAA
1 TCACAACTTGCACA
48103220 TCACAACTTGCACA
1 TCACAACTTGCACA
48103234 ATTAGGTAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.36, C:0.31, G:0.10, T:0.24
Consensus pattern (14 bp):
TCACAACTTGCACA
Found at i:48105883 original size:14 final size:14
Alignment explanation
Indices: 48105862--48105902 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
48105852 TTGCAACTTG
48105862 CACAACTTGCACAT
1 CACAACTTGCACAT
** *
48105876 TGCAACTTGCAAAT
1 CACAACTTGCACAT
48105890 CACAACTTGCACA
1 CACAACTTGCACA
48105903 ATTTGGTAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (14 bp):
CACAACTTGCACAT
Found at i:48109469 original size:63 final size:64
Alignment explanation
Indices: 48109377--48109529 Score: 175
Period size: 63 Copynumber: 2.3 Consensus size: 64
48109367 TAGAGTGTTC
* * * * *
48109377 TCCTTCTCCACACTTGTAGCATAAGCTAGATGCTGC-ACCAGTGGTGCATT-GTCGTGCAAAGTG
1 TCCTCCTCCACACTTGTAGCATAAACTAGATGATGCAACCAGTAGTGCATTCAT-GTGCAAAGTG
*
48109440 TCCTCCTCCACACTTGTAGTATAAACTAGATGATGCAGTACCAGTAGTGCATTCATGTGCAAAGT
1 TCCTCCTCCACACTTGTAGCATAAACTAGATGATGCA--ACCAGTAGTGCATTCATGTGCAAAGT
48109505 G
64 G
*
48109506 CCCTCCTTCACCACACTTGTAGCA
1 TCCTCC-T--CCACACTTGTAGCA
48109530 CAAGCTAGGT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
63 32 0.43
66 28 0.37
67 2 0.03
69 13 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (64 bp):
TCCTCCTCCACACTTGTAGCATAAACTAGATGATGCAACCAGTAGTGCATTCATGTGCAAAGTG
Found at i:48109475 original size:66 final size:63
Alignment explanation
Indices: 48109377--48109529 Score: 164
Period size: 66 Copynumber: 2.3 Consensus size: 63
48109367 TAGAGTGTTC
* * * * *
48109377 TCCTTCTCCACACTTGTAGCATAAGCTAGATGCTGCACCAGTGGTGCATT-GTCGTGCAAAGTG
1 TCCTCCTCCACACTTGTAGCATAAACTAGATGCAGCACCAGTAGTGCATTCAT-GTGCAAAGTG
* *
48109440 TCCTCCTCCACACTTGTAGTATAAACTAGATGATGCAGTACCAGTAGTGCATTCATGTGCAAAGT
1 TCCTCCTCCACACTTGTAGCATAAACT--A-GATGCAGCACCAGTAGTGCATTCATGTGCAAAGT
48109505 G
63 G
*
48109506 CCCTCCTTCACCACACTTGTAGCA
1 TCCTCC-T--CCACACTTGTAGCA
48109530 CAAGCTAGGT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
63 24 0.32
65 1 0.01
66 34 0.46
67 2 0.03
69 13 0.18
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (63 bp):
TCCTCCTCCACACTTGTAGCATAAACTAGATGCAGCACCAGTAGTGCATTCATGTGCAAAGTG
Found at i:48110549 original size:22 final size:22
Alignment explanation
Indices: 48110524--48110568 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
48110514 AGTGAAATTG
48110524 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
48110546 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
48110568 T
1 T
48110569 GTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:48114323 original size:22 final size:22
Alignment explanation
Indices: 48114295--48114339 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
48114285 AGGGGGAGTG
48114295 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
48114317 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
48114339 T
1 T
48114340 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:48121473 original size:40 final size:40
Alignment explanation
Indices: 48121429--48121565 Score: 247
Period size: 40 Copynumber: 3.4 Consensus size: 40
48121419 GGCTCGGATG
*
48121429 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
48121469 TAATAACCCGCACGAATGCCTTCGGGACTTACCCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
48121509 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
48121549 CAATAACCCGCACGAAT
1 TAATAACCCGCACGAAT
48121566 ACTATGCACA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (40 bp):
TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
Found at i:48125648 original size:46 final size:46
Alignment explanation
Indices: 48125593--48125720 Score: 202
Period size: 46 Copynumber: 2.8 Consensus size: 46
48125583 ATTTGGGCAT
* *
48125593 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * *
48125639 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
48125685 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48125721 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:48132335 original size:39 final size:39
Alignment explanation
Indices: 48132278--48132445 Score: 273
Period size: 39 Copynumber: 4.3 Consensus size: 39
48132268 AAGCAAGACA
48132278 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* * *
48132317 CTAGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCATC
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
48132356 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
48132395 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
48132434 CTGGAAATGTAT
1 CTGGAAATGTAT
48132446 TCGTGCTGGT
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:48136727 original size:16 final size:16
Alignment explanation
Indices: 48136706--48136748 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
48136696 ATGAATCGGC
48136706 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCA
** *
48136722 AAAAGCTAAAATGCCG
1 AAAAGCCGAAATGCCA
48136738 AAAAGCCGAAA
1 AAAAGCCGAAA
48136749 GTTTGGCTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.21, G:0.19, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:48137069 original size:28 final size:29
Alignment explanation
Indices: 48136961--48137073 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
48136951 GAGAATGAAA
* * *
48136961 ATGAATGTGA-CTGGGCCTAACGGGCCAA
1 ATGAATGTGATTTGGGCCTAATGGGCCAT
*
48136989 ATAAATGTGATTTGGGCCTAATGGGCCAT
1 ATGAATGTGATTTGGGCCTAATGGGCCAT
* *
48137018 AT-ACAGGTGATTTGGGCTTAATGGGCCAT
1 ATGA-ATGTGATTTGGGCCTAATGGGCCAT
* *
48137047 ATGAATATGA-TTGGGCTTAATGGGCCA
1 ATGAATGTGATTTGGGCCTAATGGGCCA
48137074 GATACAGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
ATGAATGTGATTTGGGCCTAATGGGCCAT
Found at i:48137073 original size:57 final size:58
Alignment explanation
Indices: 48136972--48137082 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 58
48136962 TGAATGTGAC
* *
48136972 TGGGCCTAACGGGCCAAATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCAAATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * * * *
48137030 TGGGCTTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCAAATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
48137083 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCAAATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:48144024 original size:30 final size:30
Alignment explanation
Indices: 48143990--48144050 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
48143980 TCCTTAACTC
48143990 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
48144020 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
48144050 A
1 A
48144051 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:48145143 original size:29 final size:29
Alignment explanation
Indices: 48145109--48145178 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
48145099 AATGTGGCTA
* *
48145109 GGCCTAACGGGCCA-AATAAATGTGATTTG
1 GGCCTAATGGGCCATAA-AAAGGTGATTTG
* *
48145138 GGCCTAATGGGCTATAAACAGGTGATTTG
1 GGCCTAATGGGCCATAAAAAGGTGATTTG
48145167 GGCCTAATGGGC
1 GGCCTAATGGGC
48145179 TATATGAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 34 0.94
30 2 0.06
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCCTAATGGGCCATAAAAAGGTGATTTG
Found at i:48147477 original size:17 final size:18
Alignment explanation
Indices: 48147441--48147477 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
48147431 TATCCACATT
*
48147441 TTTATTCAACACTTATAA
1 TTTATTCAACACTAATAA
48147459 TTTATTCAAC-CTAATAA
1 TTTATTCAACACTAATAA
48147476 TT
1 TT
48147478 ATTTTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTATTCAACACTAATAA
Found at i:48149327 original size:27 final size:27
Alignment explanation
Indices: 48149290--48149383 Score: 86
Period size: 27 Copynumber: 3.5 Consensus size: 27
48149280 AAGGGCAAAA
*
48149290 TAGTCATTTTAC-CTTAC-AGGGTTATTT
1 TAGTAATTTTACAC-TACAAGGG-TATTT
48149317 TAGTAATTTTACACTACAAGGGTATTT
1 TAGTAATTTTACACTACAAGGGTATTT
* * **
48149344 TGGTAATTTTACA-AATTAGAGGTATTT
1 TAGTAATTTTACACTACAAG-GGTATTT
*
48149371 CAGTAATTTTACA
1 TAGTAATTTTACA
48149384 AGTTGAGGGT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.05
27 49 0.86
28 5 0.09
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.44
Consensus pattern (27 bp):
TAGTAATTTTACACTACAAGGGTATTT
Found at i:48149394 original size:27 final size:26
Alignment explanation
Indices: 48149307--48149396 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 26
48149297 TTTACCTTAC
* * **
48149307 AGGGTTATTTTAGTAATTTTACACTACA
1 AGGG-TATTTCAGTAATTTTACA-AATT
**
48149335 AGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCAGTAATTTTACAAATT
*
48149361 AGAGGTATTTCAGTAATTTTACAAGTT
1 AG-GGTATTTCAGTAATTTTACAAATT
48149388 GAGGGTATT
1 -AGGGTATT
48149397 AACGACCCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
26 3 0.06
27 44 0.83
28 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (26 bp):
AGGGTATTTCAGTAATTTTACAAATT
Found at i:48159840 original size:48 final size:46
Alignment explanation
Indices: 48159566--48159883 Score: 170
Period size: 46 Copynumber: 6.7 Consensus size: 46
48159556 CGAAATCGAG
* * **
48159566 GCCGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCACATATCTGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATA-ATC-AA
* * *
48159616 GCCGATATCATGTCCCAGACATGGTCTTACACT-GACACTTC-T-AT-AC
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTAG-CTC-TCATAATCAA
* * * * *
48159662 GTACCGATGCCATGTCCTAGACATGGTCTTACTCT-G-ACACAT-CTCATA
1 G--CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATCA-A
* * * * * *
48159710 GCCAATGCATATCTCAGACATGTCTTACACCAGCT-TACAT-CTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAATC-AA
* * * *
48159756 GCCAATGTATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATCAA
* * **
48159801 TGCCGATGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATCAA
48159850 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
48159884 ACACAAATGA
Statistics
Matches: 213, Mismatches: 37, Indels: 40
0.73 0.13 0.14
Matches are distributed among these distances:
44 8 0.04
45 14 0.07
46 70 0.33
47 28 0.13
48 56 0.26
49 3 0.01
50 32 0.15
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATCAA
Found at i:48161766 original size:39 final size:39
Alignment explanation
Indices: 48161711--48161786 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
48161701 AATACCTATT
48161711 CCAACTGCCTTAAAACTCGAGAACACAACACCGTAACTA
1 CCAACTGCCTTAAAACTCGAGAACACAACACCGTAACTA
* *
48161750 CCAACTGCCTTGAAACTCGAGAACATAACACCGTAAC
1 CCAACTGCCTTAAAACTCGAGAACACAACACCGTAAC
48161787 ATGTCCTCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.39, C:0.33, G:0.12, T:0.16
Consensus pattern (39 bp):
CCAACTGCCTTAAAACTCGAGAACACAACACCGTAACTA
Found at i:48167815 original size:46 final size:46
Alignment explanation
Indices: 48167766--48167945 Score: 168
Period size: 46 Copynumber: 3.9 Consensus size: 46
48167756 TACACTAACA
48167766 CATCTTGTAGCCGATGCATGTCCTAGACATGTCTTACACTGGCT-T
1 CATCTTGTAGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT
* * * * *
48167811 ACATCTCG-AGGCAGATGCATGTCCAAGACACGTCTTACACTAGCTCT
1 -CATCTTGTA-GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT
* * * * *
48167858 CGTCTTAATA-CCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCT
1 CATCTT-GTAGCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTCT
** * *
48167906 CATAATGTGGCTGATGCATGTCCTAGACATGTCTTACACT
1 CATCTTGTAGCCGATGCATGTCCTAGACATGTCTTACACT
48167946 AGTGCACAAA
Statistics
Matches: 104, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
45 1 0.01
46 55 0.53
47 25 0.24
48 23 0.22
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
CATCTTGTAGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT
Found at i:48170194 original size:27 final size:27
Alignment explanation
Indices: 48170169--48170255 Score: 140
Period size: 27 Copynumber: 3.2 Consensus size: 27
48170159 ATACATCACA
48170169 TAGGGGCATAACAGTCATTTTATCACA-
1 TAGGGGCATAACAGTCATTTTATCA-AT
48170196 TAGGGGCATAACAGTCATTTTATCAAT
1 TAGGGGCATAACAGTCATTTTATCAAT
* *
48170223 TAGGAGCATAACAGTCTTTTTATCAAT
1 TAGGGGCATAACAGTCATTTTATCAAT
48170250 TAGGGG
1 TAGGGG
48170256 GTTTAGGTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (27 bp):
TAGGGGCATAACAGTCATTTTATCAAT
Found at i:48176043 original size:46 final size:45
Alignment explanation
Indices: 48175990--48176165 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
48175980 TATTTGGGCA
*
48175990 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
48176036 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
48176083 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
48176129 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48176166 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:48176145 original size:93 final size:93
Alignment explanation
Indices: 48175986--48176157 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
48175976 AGGATATTTG
* * *
48175986 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
48176051 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
48176079 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
48176144 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
48176158 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:48179015 original size:28 final size:29
Alignment explanation
Indices: 48178903--48179015 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
48178893 CCTGTATCTA
* * *
48178903 GCCCATTAAGCCC-ATTCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* *
48178931 GCCTATTAGGCCCAAATTATC-TGT-ATATG
1 GCCCATTAGGCCCAAATCA-CAT-TCATATG
*
48178960 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
*
48178989 GCCCGTTAGGCCC-AATCACATTCATAT
1 GCCCATTAGGCCCAAATCACATTCATAT
48179016 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
28 26 0.37
29 44 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:48180364 original size:16 final size:16
Alignment explanation
Indices: 48180343--48180376 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
48180333 AAAAAATTTG
*
48180343 GGATTTCGGGATTTTT
1 GGATTTCGAGATTTTT
48180359 GGATTTCGAGATTTTT
1 GGATTTCGAGATTTTT
48180375 GG
1 GG
48180377 GGCATTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.32, T:0.47
Consensus pattern (16 bp):
GGATTTCGAGATTTTT
Found at i:48182610 original size:45 final size:45
Alignment explanation
Indices: 48182561--48182766 Score: 195
Period size: 43 Copynumber: 4.8 Consensus size: 45
48182551 GCTGGGCACA
* *
48182561 CACACATATATATAATATTTGTCAGTTTCACCAACCAATACTGAG
1 CACACATATATATAATATTTGTCAGTTTCACCGACCAATACTGGG
* * *
48182606 CACACATATATATAATATTTGT-AGGTTTCACTGACCATTGCTGGG
1 CACACATATATATAATATTTGTCA-GTTTCACCGACCAATACTGGG
* *
48182651 CACAC----AT-T-A-ATTTGTCAGTTTCACCGGCCAATGCTGGG
1 CACACATATATATAATATTTGTCAGTTTCACCGACCAATACTGGG
* *
48182689 --CACATATATATAATAATTGT-TGATTTCACCGACCAATACTGGG
1 CACACATATATATAATATTTGTCAG-TTTCACCGACCAATACTGGG
* * *
48182732 CACAC--ATATATAATATTTGTCGGTTTGACCAACCA
1 CACACATATATATAATATTTGTCAGTTTCACCGACCA
48182767 GCACTACACG
Statistics
Matches: 132, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
36 3 0.02
38 24 0.18
39 2 0.02
40 3 0.02
41 3 0.02
42 2 0.02
43 47 0.36
44 2 0.02
45 46 0.35
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (45 bp):
CACACATATATATAATATTTGTCAGTTTCACCGACCAATACTGGG
Found at i:48182733 original size:81 final size:83
Alignment explanation
Indices: 48182577--48182738 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 83
48182567 TATATATAAT
* * *
48182577 ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATATTTGTAGGTTTCACTGACC
1 ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATAATTGTAGATTTCACCGACC
* *
48182642 ATTGCTGGGCACACATTA
66 AATACTGGGCACACATTA
** * * *
48182660 ATTTGTCAGTTTCACCGGCCAATGCTG-G-GCACATATATATAATAATTGTTGATTTCACCGACC
1 ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATAATTGTAGATTTCACCGACC
48182723 AATACTGGGCACACAT
66 AATACTGGGCACACAT
48182739 ATATAATATT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
81 44 0.64
82 1 0.01
83 24 0.35
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (83 bp):
ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATAATTGTAGATTTCACCGACC
AATACTGGGCACACATTA
Found at i:48184965 original size:15 final size:13
Alignment explanation
Indices: 48184936--48184960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48184926 ATAGCCCCAT
48184936 GAGCAAAAAAATA
1 GAGCAAAAAAATA
48184949 GAGCAAAAAAAT
1 GAGCAAAAAAAT
48184961 TTAGAAATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08
Consensus pattern (13 bp):
GAGCAAAAAAATA
Found at i:48190337 original size:67 final size:66
Alignment explanation
Indices: 48190229--48190379 Score: 205
Period size: 67 Copynumber: 2.3 Consensus size: 66
48190219 ATAATCAGTT
48190229 TAAAAACGTCACAAAAAAGACAATTTTAGTTACTTTTATTTTTTTTAACTAAAAGGCAACGAAA-
1 TAAAAACGTCACAAAAAAGACAATTTTAGTTACTTTTA--TTTTTTAACTAAAAGGCAACGAAAT
48190293 GAA
64 GAA
* ** * * * *
48190296 TAAAAACATCACAAAAGGGATATTTTTAGTTACTTTTATTTTTTGACTAAAAGGTAACGAAATGA
1 TAAAAACGTCACAAAAAAGACAATTTTAGTTACTTTTATTTTTTAACTAAAAGGCAACGAAATGA
48190361 A
66 A
*
48190362 CAAAAACGTCACAAAAAA
1 TAAAAACGTCACAAAAAA
48190380 TAAGCAATGA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
65 22 0.31
66 17 0.24
67 33 0.46
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (66 bp):
TAAAAACGTCACAAAAAAGACAATTTTAGTTACTTTTATTTTTTAACTAAAAGGCAACGAAATGA
A
Found at i:48193059 original size:42 final size:42
Alignment explanation
Indices: 48193005--48193134 Score: 154
Period size: 42 Copynumber: 3.1 Consensus size: 42
48192995 TACATAGTAC
* * ****
48193005 CATACCAATGCCATATCTCAGATATGGTCTTACATGGGATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
* * *
48193047 CATATCGATGCCAATAGCCCA-ACTATGGTCTTATACAAAATCT
1 CATACCGATGCC-ATATCCCAGA-TATGGTCTTACACAAAATCT
48193090 CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
48193132 CAT
1 CAT
48193135 CTAACTTTAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 40 0.55
43 33 0.45
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (42 bp):
CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
Found at i:48200451 original size:66 final size:67
Alignment explanation
Indices: 48200322--48200451 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
48200312 GGGATGTATC
*
48200322 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
48200387 AGAACA
62 AGAACA
* *
48200393 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
48200452 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGAA
CA
Found at i:48203878 original size:24 final size:25
Alignment explanation
Indices: 48203851--48203902 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
48203841 GCCTAGCCTC
48203851 TTTTGAT-AACTAGGGCAAAGCCCT
1 TTTTGATAAACTAGGGCAAAGCCCT
* *
48203875 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTGATAAACTAGGGCAAAGCCCT
48203900 TTT
1 TTT
48203903 CGCACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTGATAAACTAGGGCAAAGCCCT
Found at i:48203977 original size:21 final size:21
Alignment explanation
Indices: 48203950--48204010 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
48203940 TATAATGAGT
48203950 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
48203971 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
48203992 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
48204011 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:48204009 original size:10 final size:10
Alignment explanation
Indices: 48203950--48204010 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
48203940 TATAATGAGT
48203950 ATATCATAG-C
1 ATATCAT-GTC
48203960 ATATCATGTGC
1 ATATCATGT-C
* **
48203971 ATCTCATAAC
1 ATATCATGTC
48203981 ATATCATGTGC
1 ATATCATGT-C
48203992 ATATCATGTC
1 ATATCATGTC
48204002 ATATCATGT
1 ATATCATGT
48204011 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:48207843 original size:54 final size:56
Alignment explanation
Indices: 48207640--48207897 Score: 290
Period size: 56 Copynumber: 4.7 Consensus size: 56
48207630 TCTCAGACAG
* ** * *
48207640 GGTCTTACTCGCACACATATATTGGAGTCACATATCGATGCCAA-TTATTAAACAT
1 GGTCTTACTCGAACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* * * * * *
48207695 GCTTTTATTC-ACACATATATATCGGAATCACATATCGGTGCCAACGTATTAAACAT
1 GGTCTTACTCGA-ACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* ** **
48207751 GGTCTTACTCGCACACATATGCCAGAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGAACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* * *
48207807 GGTCTTA-T-TAACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGAACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* *
48207861 GGTATTACTCGCACACATATATCAGAATCACATATCG
1 GGTCTTACTCGAACACATATATCAGAATCACATATCG
48207898 CAAGTTGAAG
Statistics
Matches: 169, Mismatches: 29, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
54 46 0.27
55 37 0.22
56 86 0.51
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGAACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
Found at i:48207869 original size:110 final size:111
Alignment explanation
Indices: 48207644--48207897 Score: 341
Period size: 110 Copynumber: 2.3 Consensus size: 111
48207634 AGACAGGGTC
** * * *
48207644 TTACTCGCACACATATATTGGAGTCACATATCGATGCCAATTATTAAACATGCTTTTATTCACAC
1 TTACTCGCACACATATATCAGAATCACATATCGATGCCAAGTATTAAACATGCTCTTATTCACAC
* * * *
48207709 ATATATATCGGAATCACATATCGGTGCCAACGTATTAAACATGGTC
66 ACATATATCAGAATCACATATCGATGCCAACGTATTAAACATGGTA
** ** *
48207755 TTACTCGCACACATATGCCAGAATCACATATCGATGCCAACGTATTAAATGTGGTCTTATT-A-A
1 TTACTCGCACACATATATCAGAATCACATATCGATGCCAA-GTATTAAACATGCTCTTATTCACA
* *
48207818 CACATATATCAGAATCACATATCGATGCCAATGTATTAAACGTGGTA
65 CACATATATCAGAATCACATATCGATGCCAACGTATTAAACATGGTA
48207865 TTACTCGCACACATATATCAGAATCACATATCG
1 TTACTCGCACACATATATCAGAATCACATATCG
48207898 CAAGTTGAAG
Statistics
Matches: 124, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
110 73 0.59
111 36 0.29
112 15 0.12
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (111 bp):
TTACTCGCACACATATATCAGAATCACATATCGATGCCAAGTATTAAACATGCTCTTATTCACAC
ACATATATCAGAATCACATATCGATGCCAACGTATTAAACATGGTA
Found at i:48211895 original size:28 final size:28
Alignment explanation
Indices: 48211861--48211932 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
48211851 CCCCTTTAGG
* *
48211861 CCCAATCTCATTCATATGAACCATCGG-
1 CCCAATCACATTCATATGAACCACCGGA
**
48211888 CTCCAATCACATTCATATGGCCCACCGGA
1 C-CCAATCACATTCATATGAACCACCGGA
48211917 CCCAATCACATTCATA
1 CCCAATCACATTCATA
48211933 GTCATGCAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 1 0.03
28 37 0.95
29 1 0.03
ACGTcount: A:0.31, C:0.36, G:0.10, T:0.24
Consensus pattern (28 bp):
CCCAATCACATTCATATGAACCACCGGA
Found at i:48217374 original size:56 final size:56
Alignment explanation
Indices: 48217314--48217571 Score: 342
Period size: 55 Copynumber: 4.6 Consensus size: 56
48217304 TGTCAGATAG
* * *
48217314 GGTCTTACTCGCACACATATACCGGAGTCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* * * *
48217370 GGTCTT-TTCACACACATATATCAGAATGACATATCAATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* * *
48217425 GATTTTACTCGCACACATATATC-GAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
* * * *
48217480 GGTCTTATTCACACACATATATCAAAATCACATATTGATGCCAACGTATTAAA-AGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACA-T
* *
48217536 GTTCTTACTCGCACACATATATCAGAATTACATATC
1 GGTCTTACTCGCACACATATATCAGAATCACATATC
48217572 ACAAGTTGAA
Statistics
Matches: 172, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
55 94 0.55
56 78 0.45
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACAT
Found at i:48217497 original size:111 final size:111
Alignment explanation
Indices: 48217316--48217571 Score: 383
Period size: 111 Copynumber: 2.3 Consensus size: 111
48217306 TCAGATAGGG
* * *
48217316 TCTTACTCGCACACATATACCGGAGTCACATATCGATGCCAACGTATTAAACATGGTCTTTTCAC
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACATGGTCTTTTCAC
* *
48217381 ACACATATATCAGAATGACATATCAATGCCAACGTATTAAACA-TGAT
66 ACACATATATCAAAATCACATATCAATGCCAACGTATTAAA-AGTG-T
*
48217428 T-TTACTCGCACACATATATC-GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTATTCA
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACATGGTCTT-TTCA
**
48217491 CACACATATATCAAAATCACATATTGATGCCAACGTATTAAAAGTGT
65 CACACATATATCAAAATCACATATCAATGCCAACGTATTAAAAGTGT
*
48217538 TCTTACTCGCACACATATATCAGAATTACATATC
1 TCTTACTCGCACACATATATCAGAATCACATATC
48217572 ACAAGTTGAA
Statistics
Matches: 132, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
110 39 0.30
111 81 0.61
112 12 0.09
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.29
Consensus pattern (111 bp):
TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACATGGTCTTTTCAC
ACACATATATCAAAATCACATATCAATGCCAACGTATTAAAAGTGT
Found at i:48219064 original size:23 final size:21
Alignment explanation
Indices: 48219002--48219072 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 21
48218992 CCTTACTGTT
*
48219002 TTCAGCTCGTTGGAGCTTACTA
1 TTCAGCTCG-TAGAGCTTACTA
*
48219024 TTCTTAGCTCGTATGAGCTTATTGA
1 TTC--AGCTCGTA-GAGCTTACT-A
48219049 TTCAGCTCGCTAGAGCTTACTA
1 TTCAGCTCG-TAGAGCTTACTA
48219071 TT
1 TT
48219073 TTAGCTCAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
22 6 0.15
23 15 0.37
24 16 0.39
25 4 0.10
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (21 bp):
TTCAGCTCGTAGAGCTTACTA
Found at i:48219078 original size:23 final size:22
Alignment explanation
Indices: 48218993--48219094 Score: 80
Period size: 23 Copynumber: 4.4 Consensus size: 22
48218983 CTGTTACAAC
* *
48218993 CTTACTGTTTTCAGCTCGTTGGAG
1 CTTACTATTTT-AGCTCG-TAGAG
48219017 CTTACTATTCTTAGCTCGTATGAG
1 CTTACTATT-TTAGCTCGTA-GAG
* *
48219041 CTTATTGA-TTCAGCTCGCTAGAG
1 CTTACT-ATTTTAGCTCG-TAGAG
*
48219064 CTTACTATTTTAGCTCAATAGAG
1 CTTACTATTTTAGCTC-GTAGAG
*
48219087 GTTACTAT
1 CTTACTAT
48219095 CCATCAGCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
22 1 0.02
23 35 0.55
24 25 0.39
25 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.40
Consensus pattern (22 bp):
CTTACTATTTTAGCTCGTAGAG
Found at i:48222637 original size:14 final size:15
Alignment explanation
Indices: 48222606--48222638 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
48222596 GAACAACACC
*
48222606 GAATAGCTCTATACA
1 GAATAGCTCCATACA
48222621 GAATAGCTCCA-ACA
1 GAATAGCTCCATACA
48222635 GAAT
1 GAAT
48222639 TAAAAGAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.21
Consensus pattern (15 bp):
GAATAGCTCCATACA
Found at i:48246955 original size:42 final size:42
Alignment explanation
Indices: 48246896--48246993 Score: 180
Period size: 42 Copynumber: 2.4 Consensus size: 42
48246886 CTAACTTGGG
48246896 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
1 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
48246938 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
1 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
*
48246980 TCACACTGCC-ACCA
1 TCACACAGCCGACCA
48246994 GACACGCCCG
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 4 0.07
42 51 0.93
ACGTcount: A:0.27, C:0.40, G:0.17, T:0.16
Consensus pattern (42 bp):
TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
Found at i:48252068 original size:40 final size:40
Alignment explanation
Indices: 48252011--48252196 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
48252001 TTGAATGATG
* * * *
48252011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACAAAA
* *
48252051 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGTTACAAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCAAGTTACAAAA
48252091 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACAAAA
* *
48252131 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTAC-AAAA
* *
48252172 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
48252197 AACGAGGAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 11 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACAAAA
Found at i:48252148 original size:80 final size:82
Alignment explanation
Indices: 48252011--48252196 Score: 265
Period size: 80 Copynumber: 2.3 Consensus size: 82
48252001 TTGAATGATG
* *
48252011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
48252075 TGTGCGAGTTAC-AAAA
66 TGTGCGAGTTACTAAAA
* * *
48252091 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACAAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGAT-CCGAAGGCAT
*
48252154 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTAAAA
*
48252172 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48252197 AACGAGGAGC
Statistics
Matches: 95, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
79 1 0.01
80 84 0.88
81 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
TGTGCGAGTTACTAAAA
Found at i:48252214 original size:80 final size:79
Alignment explanation
Indices: 48252011--48252229 Score: 230
Period size: 80 Copynumber: 2.7 Consensus size: 79
48252001 TTGAATGATG
** * *
48252011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-AAGTGACAATATCCGGGTTAAG-TCCGAAGGCATT
48252075 TGTGCGAGTTACAAAA
64 TGTGCGAGTTACAAAA
* ** * *
48252091 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACAAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGACAATATCCGGGTTAAGT-CCGAAGGCATTT
*
48252156 GTGCGAGTTACTATAA
65 GTGCGAGTTAC-AAAA
* * * *
48252172 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGA-CAATATCCGGGTT-AAGTCCGAAGG
48252230 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
79 13 0.11
80 96 0.81
81 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGACAATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACAAAA
Found at i:48254463 original size:50 final size:50
Alignment explanation
Indices: 48254354--48254586 Score: 256
Period size: 50 Copynumber: 4.7 Consensus size: 50
48254344 GTACGCATAA
* *** * *
48254354 TAGCCTGTACTTAGTACTACACATACGACC-AACAAT-TCGGTACATGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCT-GGTACACGTAG
* *
48254403 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACACGTAG
** * * * * * *
48254453 TAGCCTGCACTTAGTACTACACAAATGA-TTGAAGTTGTCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGGTACACGTAG
* *
48254504 TAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACACGTAG
48254554 TAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGCCTGCACTTAGTACTACACACGTGACCTAA
48254587 AACCATGTTA
Statistics
Matches: 151, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 27 0.18
50 85 0.56
51 38 0.25
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACACGTAG
Found at i:48257850 original size:14 final size:15
Alignment explanation
Indices: 48257831--48257860 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
48257821 AATATTTTAT
48257831 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
48257845 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
48257860 T
1 T
48257861 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:48263117 original size:7 final size:7
Alignment explanation
Indices: 48263105--48263133 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
48263095 TTTAAAAACC
48263105 TTTTATT
1 TTTTATT
48263112 TTTTATT
1 TTTTATT
48263119 TTTTA-T
1 TTTTATT
48263125 TTTTATT
1 TTTTATT
48263132 TT
1 TT
48263134 CACTTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTATT
Found at i:48263127 original size:13 final size:14
Alignment explanation
Indices: 48263105--48263133 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
48263095 TTTAAAAACC
48263105 TTTTATTTTTTATT
1 TTTTATTTTTTATT
48263119 TTTTA-TTTTTATT
1 TTTTATTTTTTATT
48263132 TT
1 TT
48263134 CACTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTATTTTTTATT
Found at i:48265651 original size:14 final size:15
Alignment explanation
Indices: 48265632--48265661 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
48265622 ATATTTTATT
48265632 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
48265646 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
48265661 T
1 T
48265662 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:48267625 original size:28 final size:28
Alignment explanation
Indices: 48267535--48267712 Score: 261
Period size: 28 Copynumber: 6.4 Consensus size: 28
48267525 ATATTAAGTC
*
48267535 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
48267562 CGCACACTTCGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
48267589 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
48267617 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
48267645 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
48267673 CGCACACTTATTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
48267702 CGCACACTTAG
1 CGCACACTTAG
48267713 CGCCAATCTC
Statistics
Matches: 138, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
27 47 0.34
28 76 0.55
29 15 0.11
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48275989 original size:28 final size:28
Alignment explanation
Indices: 48275899--48276076 Score: 270
Period size: 28 Copynumber: 6.4 Consensus size: 28
48275889 ATATTAAGTC
*
48275899 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
48275926 CGCACACTTCGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
48275953 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
48275981 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
48276009 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
48276037 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
48276066 CGCACACTTAG
1 CGCACACTTAG
48276077 CGCCAATCTC
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 47 0.34
28 77 0.55
29 16 0.11
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48281440 original size:96 final size:94
Alignment explanation
Indices: 48281327--48281922 Score: 967
Period size: 96 Copynumber: 6.2 Consensus size: 94
48281317 ATTCAGCCAA
48281327 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATGT
48281392 GATAAGGCCTAATGGCCGATGTGATGAATGT
64 GATAAGGCCTAATGGCCGATGTGATGAATGT
*
48281423 GAAACTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATGT
48281488 GATAAGGCCTAATGGCCGATGTGATGAATGT
64 GATAAGGCCTAATGGCCGATGTGATGAATGT
48281519 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
48281584 GATAAGGCCTAATGGCCGATGTGATGAATGT
64 GATAAGGCCTAATGGCCGATGTGATGAATGT
48281615 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATAT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATAT
*
48281680 GTGATAAGGCCTAATAGCCGATGTGATGAATGT
62 GTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * *
48281713 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48281778 TAAGGCCTAATGGCCGATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
48281807 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
48281872 CAGGGCCGAGTGGCCAACGTAATGGATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
* *
48281901 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
48281923 TCCCGAAGGG
Statistics
Matches: 476, Mismatches: 20, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
94 139 0.29
96 244 0.51
98 93 0.20
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:48281454 original size:47 final size:47
Alignment explanation
Indices: 48281327--48281922 Score: 967
Period size: 47 Copynumber: 12.5 Consensus size: 47
48281317 ATTCAGCCAA
48281327 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
48281374 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
48281423 GAAACTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
48281470 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
48281519 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
48281568 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
48281615 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
48281664 GAAAGTGTATGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
48281713 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
48281760 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
48281807 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * *
48281854 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
48281901 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
48281923 TCCCGAAGGG
Statistics
Matches: 523, Mismatches: 20, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 286 0.55
49 237 0.45
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:48281599 original size:145 final size:143
Alignment explanation
Indices: 48281327--48281922 Score: 1007
Period size: 145 Copynumber: 4.2 Consensus size: 143
48281317 ATTCAGCCAA
48281327 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGT
*
48281392 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAAGGCCTAATGGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
48281457 ATGTGATGAATGT
131 ATGTGATGAATGT
48281470 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATAT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATAT
48281535 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
48281600 CGATGTGATGAATGT
129 CGATGTGATGAATGT
48281615 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATAT
1 GAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATAT
* * *
48281680 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
48281745 CGATGTGATGAATGT
129 CGATGTGATGAATGT
*
48281760 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGT
* * * * *
48281823 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
48281888 ACGTAATGGATGT
131 ATGTGATGAATGT
* *
48281901 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
48281923 TCCCGAAGGG
Statistics
Matches: 432, Mismatches: 19, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
141 93 0.22
143 55 0.13
145 284 0.66
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGT
Found at i:48282097 original size:37 final size:38
Alignment explanation
Indices: 48282041--48282120 Score: 117
Period size: 37 Copynumber: 2.1 Consensus size: 38
48282031 CCGAGCTCTA
* * *
48282041 AAGACCCGATGACTACGTGTGGGGATTTTGTCC-GGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGGT
*
48282078 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGGT
48282116 AAGAC
1 AAGAC
48282121 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 29 0.76
38 9 0.24
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (38 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGGT
Found at i:48294092 original size:67 final size:67
Alignment explanation
Indices: 48293984--48294112 Score: 249
Period size: 67 Copynumber: 1.9 Consensus size: 67
48293974 ATTTAGATTG
*
48293984 TCAACATTTTCATTGTTACTTGGTGGATCTGATGCCAAGATACGCTCTAATGGATCGTCTTCAAT
1 TCAACATTGTCATTGTTACTTGGTGGATCTGATGCCAAGATACGCTCTAATGGATCGTCTTCAAT
48294049 TA
66 TA
48294051 TCAACATTGTCATTGTTACTTGGTGGATCTGATGCCAAGATACGCTCTAATGGATCGTCTTC
1 TCAACATTGTCATTGTTACTTGGTGGATCTGATGCCAAGATACGCTCTAATGGATCGTCTTC
48294113 TAAGTTGAGT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (67 bp):
TCAACATTGTCATTGTTACTTGGTGGATCTGATGCCAAGATACGCTCTAATGGATCGTCTTCAAT
TA
Done.