Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 152 of 332
Found at i:49868297 original size:46 final size:46
Alignment explanation
Indices: 49868157--49868369 Score: 186
Period size: 46 Copynumber: 4.6 Consensus size: 46
49868147 TGGGCTAGTC
* * *
49868157 TAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGACCTCGA-GATGAGAGCCAGTG
* * * * *
49868203 TAAGACCATGTCTGGGATATGGCATC-AGCATTGAGATGAGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGA-CCTCGAGATGAGAGCCAGTG
*
49868251 TAAGACATGTCTGGGACATGCTTCGACCTCGAGATGTA-AGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGACCTCGAGATG-AGAGCCAGTG
* * * *
49868297 TAAGACATGTCTGGGACATGAATCG-GCTACGAGA-G-GTGTCAGTG
1 TAAGACATGTCTGGGACATGCATCGACCT-CGAGATGAGAGCCAGTG
*
49868341 TAAGACCATGTCTAGGACATGGCATCGAC
1 TAAGA-CATGTCTGGGACAT-GCATCGAC
49868370 ACAGATATGC
Statistics
Matches: 134, Mismatches: 22, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 56 0.42
47 28 0.21
48 22 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGACCTCGAGATGAGAGCCAGTG
Found at i:49879392 original size:25 final size:26
Alignment explanation
Indices: 49879363--49879413 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
49879353 CAAATTCGAG
*
49879363 ATAGAAAT-ATTTTTTTATAATTATT
1 ATAGAAATAATTATTTTATAATTATT
49879388 ATAGAAATAATTATTTTATAATTATT
1 ATAGAAATAATTATTTTATAATTATT
49879414 TTGATGTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (26 bp):
ATAGAAATAATTATTTTATAATTATT
Found at i:49880199 original size:30 final size:30
Alignment explanation
Indices: 49880141--49880200 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
49880131 TTCCTGAGCC
* *
49880141 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* * *
49880171 TAGGGGTAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
49880201 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:49883133 original size:25 final size:25
Alignment explanation
Indices: 49883099--49883162 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
49883089 CATGTACATA
49883099 TGTGCTCACACAAGCTATGAATAAG
1 TGTGCTCACACAAGCTATGAATAAG
* *
49883124 TGTGCTCACACGAGCTGTGAATAAG
1 TGTGCTCACACAAGCTATGAATAAG
* *
49883149 TGTCCTTACACAAG
1 TGTGCTCACACAAG
49883163 ATGTGGAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
TGTGCTCACACAAGCTATGAATAAG
Found at i:49884988 original size:9 final size:9
Alignment explanation
Indices: 49884974--49885003 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
49884964 AGCATCAAAG
49884974 GAGGAAGAT
1 GAGGAAGAT
49884983 GAGGAAGAT
1 GAGGAAGAT
*
49884992 GAGGAGGAT
1 GAGGAAGAT
49885001 GAG
1 GAG
49885004 TCAAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.50, T:0.10
Consensus pattern (9 bp):
GAGGAAGAT
Found at i:49890143 original size:23 final size:21
Alignment explanation
Indices: 49890101--49890144 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
49890091 ATCTAATATA
49890101 TGAAGAGAAAAAGAAGGTGAG
1 TGAAGAGAAAAAGAAGGTGAG
*
49890122 TGAAGGAGAAATAAGGAGGTGAG
1 TGAA-GAGAAA-AAGAAGGTGAG
49890145 CCTTAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 6 0.30
23 10 0.50
ACGTcount: A:0.48, C:0.00, G:0.41, T:0.11
Consensus pattern (21 bp):
TGAAGAGAAAAAGAAGGTGAG
Found at i:49891525 original size:28 final size:28
Alignment explanation
Indices: 49891494--49891567 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
49891484 TCATAATTCA
49891494 CCACAAAGGCTTTTTCTTTCATATTTTG
1 CCACAAAGGCTTTTTCTTTCATATTTTG
* *
49891522 CCACAAAGGC-TTTTCTTTCATGTTTTT
1 CCACAAAGGCTTTTTCTTTCATATTTTG
* *
49891549 CCATAAAGG-TTTTCCTTTC
1 CCACAAAGGCTTTTTCTTTC
49891568 TTGACGTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
27 31 0.76
28 10 0.24
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.46
Consensus pattern (28 bp):
CCACAAAGGCTTTTTCTTTCATATTTTG
Found at i:49896881 original size:27 final size:27
Alignment explanation
Indices: 49896852--49896930 Score: 56
Period size: 27 Copynumber: 2.9 Consensus size: 27
49896842 AAAATTACCG
*
49896852 AAAAACCCTTAGTTTGTAAAAATACTGA
1 AAAA-CCCTTAGTTTGTAAAATTACTGA
* *
49896880 AATACCC-TCGATTTGTAAAATTACT-A
1 AAAACCCTTAG-TTTGTAAAATTACTGA
* *
49896906 AAATA-CCTTCGACTTGTAAAATTAC
1 AAA-ACCCTTAG-TTTGTAAAATTAC
49896931 CAAAGTACCC
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
26 7 0.16
27 33 0.77
28 3 0.07
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAACCCTTAGTTTGTAAAATTACTGA
Found at i:49896939 original size:27 final size:26
Alignment explanation
Indices: 49896865--49896940 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
49896855 AACCCTTAGT
* * *
49896865 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAC
* *
49896892 TTGTAAAATTACTAAAATACCTTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAC
49896919 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAA-TACCC
49896941 CCGATTTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 39 0.93
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAC
Found at i:49896966 original size:27 final size:27
Alignment explanation
Indices: 49896936--49897147 Score: 225
Period size: 27 Copynumber: 7.9 Consensus size: 27
49896926 ATTACCAAAG
* *
49896936 TACCCCCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
49896963 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
49896990 TACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
49897017 TACCCTCGACTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* **
49897044 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
49897071 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
49897098 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
49897125 TACCTTCGATTTATAAAATTACT
1 TACCCTCGATTTACAGAATTACT
49897148 AAAATACCCT
Statistics
Matches: 162, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 159 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:49897156 original size:54 final size:54
Alignment explanation
Indices: 49897052--49897158 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
49897042 TTTACCCTCG
* * ****
49897052 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTA
1 ATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTA
** *
49897106 ATTTACAGAATTACTGTTTTACCTTCGATTTATAAAATTACTAAAATACCCTT
1 ATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTT
49897159 GGTTTGTAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.43
Consensus pattern (54 bp):
ATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTA
Found at i:49897172 original size:81 final size:81
Alignment explanation
Indices: 49896990--49897173 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 81
49896980 ATTATCGTTT
* * * *
49896990 TACCCCCGATTTACATAATTA-TCGTTTTACCCTCGACTTACAGAATTATCGTTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACT-GTTTTACCCTCAACTTACAGAATTATCGTTTTACCCTCGAT
* ***
49897054 TTATAGAATTACCATTT
65 TTATAAAATTACCAAAA
* * * *
49897071 TACCCTCGATTTATAGAATTACTGTTTTACCCTTAATTTACAGAATTA-CTGTTTTACCTTCGAT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCAACTTACAGAATTATC-GTTTTACCCTCGAT
*
49897135 TTATAAAATTACTAAAA
65 TTATAAAATTACCAAAA
* * *
49897152 TACCCTTGGTTTGTAAAATTAC
1 TACCCTCGATTTATAAAATTAC
49897174 CAAAATACCC
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 83 0.98
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTGTTTTACCCTCAACTTACAGAATTATCGTTTTACCCTCGATT
TATAAAATTACCAAAA
Found at i:49897196 original size:54 final size:54
Alignment explanation
Indices: 49897133--49897264 Score: 194
Period size: 54 Copynumber: 2.4 Consensus size: 54
49897123 TTTACCTTCG
* * *
49897133 ATTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-CTA
1 ATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATGACCAAAATACCCTC-A
* * *
49897187 GTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATGACCGAAATACCCTCA
1 ATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATGACCAAAATACCCTCA
49897241 ATTTGTAAAATTACCAAAATACCC
1 ATTTGTAAAATTACCAAAATACCC
49897265 CGATTTACAA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
54 69 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
ATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATGACCAAAATACCCTCA
Found at i:49897264 original size:27 final size:27
Alignment explanation
Indices: 49897138--49897264 Score: 157
Period size: 27 Copynumber: 4.7 Consensus size: 27
49897128 CTTCGATTTA
* **
49897138 TAAAATTACTAAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTCAGTTTG
49897165 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTC-AGTTTG
**
49897192 TAAAATTACCAAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTCAGTTTG
* * * *
49897219 TGAAATGACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCAGTTTG
49897246 TAAAATTACCAAAATACCC
1 TAAAATTACCAAAATACCC
49897265 CGATTTACAA
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCAGTTTG
Found at i:49897341 original size:27 final size:27
Alignment explanation
Indices: 49897302--49897353 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
49897292 TGACTTTCTA
49897302 AAAATTATAGAAATAC-CATTGGTTTAC
1 AAAATTATAGAAATACGC-TTGGTTTAC
49897329 AAAATTACT-GAAATACGCTTGGTTT
1 AAAATTA-TAGAAATACGCTTGGTTT
49897354 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACGCTTGGTTTAC
Found at i:49897438 original size:27 final size:27
Alignment explanation
Indices: 49897395--49897468 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
49897385 AAATAACTAA
*
49897395 AATACCCCTATTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
49897422 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
49897449 AATACCTCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
49897469 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:49897472 original size:27 final size:27
Alignment explanation
Indices: 49897408--49897472 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
49897398 ACCCCTATTA
*
49897408 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
49897435 GGTAAAGTGACCGTAATA-CCTCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
49897462 GGTAAAATGAC
1 GGTAAAATGAC
49897473 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:49898304 original size:26 final size:26
Alignment explanation
Indices: 49898275--49898398 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
49898265 GAGGAAGTGC
49898275 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
49898301 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
49898327 AAGAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
49898353 AAAAGGGCTTATGCCCCAGGTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
49898379 AAAAGGGCTT-TGACCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
49898399 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 8 0.09
26 80 0.91
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:49898602 original size:42 final size:42
Alignment explanation
Indices: 49898543--49898634 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
49898533 TAGTCTCCCC
* ** *
49898543 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
49898585 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
49898627 AAATGGGC
1 AAATGGGC
49898635 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:49898693 original size:31 final size:31
Alignment explanation
Indices: 49898658--49898736 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
49898648 CGTTTACAGT
49898658 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
49898689 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
49898720 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
49898737 AATCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:49900231 original size:27 final size:26
Alignment explanation
Indices: 49900192--49900301 Score: 130
Period size: 27 Copynumber: 4.1 Consensus size: 26
49900182 ATATATGTCG
* *
49900192 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGTTC
*
49900219 TGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTCTGCCACAT-TATCTGTTC
* *
49900246 TGGTGGCTCTACCACGATTATCTGTTT
1 TGGTGGCTCTGCCAC-ATTATCTGTTC
* *
49900273 TGGTGACTCTGTCACATTATCTGTTC
1 TGGTGGCTCTGCCACATTATCTGTTC
49900299 TGG
1 TGG
49900302 CAGCTATGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGTTC
Found at i:49900452 original size:19 final size:19
Alignment explanation
Indices: 49900423--49900493 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
49900413 CATTCACATT
*
49900423 CTGATTTTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
* * *
49900442 CTGATACTGATTATAATT--
1 CTGATTCTGATTCT-GTTAC
*
49900460 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
49900479 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
49900494 ATTCTGATTC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 26 0.63
20 2 0.05
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:49900466 original size:6 final size:6
Alignment explanation
Indices: 49900420--49900513 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
49900410 TTGCATTCAC
* * * *
49900420 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTATA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
49900469 ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49900514 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 57 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49900471 original size:37 final size:37
Alignment explanation
Indices: 49900420--49900504 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
49900410 TTGCATTCAC
* *
49900420 ATTCTGATTTTGATTCTGTTACCTGATACTGATTATA
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTATA
* * *
49900457 ATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTATA
49900494 ATTCTGATTCT
1 ATTCTGATTCT
49900505 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTATA
Found at i:49901894 original size:31 final size:30
Alignment explanation
Indices: 49901854--49901935 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 30
49901844 CCTCGCTGCA
49901854 ATCTGGTGGCTTCGCCACATATATATATCTG
1 ATCTGGTGGCTTCGCCACATATAT-TATCTG
49901885 -TCCTGGTGGCTAT-GCCAC--A-ATTATCTG
1 AT-CTGGTGGCT-TCGCCACATATATTATCTG
49901912 ATCTGGTGGC-TCTGCCACATATAT
1 ATCTGGTGGCTTC-GCCACATATAT
49901936 CTGTTCTGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 17
0.72 0.00 0.28
Matches are distributed among these distances:
25 1 0.02
27 19 0.44
28 3 0.07
29 2 0.05
30 3 0.07
31 14 0.33
32 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (30 bp):
ATCTGGTGGCTTCGCCACATATATTATCTG
Found at i:49901917 original size:27 final size:26
Alignment explanation
Indices: 49901879--49901997 Score: 157
Period size: 27 Copynumber: 4.5 Consensus size: 26
49901869 CACATATATA
* *
49901879 TATCTGTCCTGGTGGCTATGCCACAAT
1 TATCTGTTCTGGTGGCTCTGCCAC-AT
*
49901906 TATCTGATCTGGTGGCTCTGCCACAT
1 TATCTGTTCTGGTGGCTCTGCCACAT
49901932 ATATCTGTTCTGGTGGCTCTGCCACGAT
1 -TATCTGTTCTGGTGGCTCTGCCAC-AT
* * *
49901960 TATCTGTTTTGGTGACTCTGTCACAT
1 TATCTGTTCTGGTGGCTCTGCCACAT
49901986 TATCTGTTCTGG
1 TATCTGTTCTGG
49901998 CAGCCATGCT
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
26 15 0.18
27 65 0.79
28 2 0.02
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.39
Consensus pattern (26 bp):
TATCTGTTCTGGTGGCTCTGCCACAT
Found at i:49901955 original size:54 final size:54
Alignment explanation
Indices: 49901876--49901997 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 54
49901866 CGCCACATAT
* *
49901876 ATATATCTGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAC
1 ATATATCTGTTCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCAC
* * * * *
49901930 ATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTTTTGGTGACTCTGTCAC
1 ATATATCTGTTCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCAC
49901984 AT-TATCTGTTCTGG
1 ATATATCTGTTCTGG
49901998 CAGCCATGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 12 0.20
54 49 0.80
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (54 bp):
ATATATCTGTTCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCAC
Found at i:49902153 original size:6 final size:6
Alignment explanation
Indices: 49902116--49902203 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
49902106 TTGCATTCAC
* * * *
49902116 ATTCTT ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
49902166 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49902204 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:49902164 original size:25 final size:25
Alignment explanation
Indices: 49902126--49902183 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
49902116 ATTCTTATTT
*
49902126 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTGATACTGATTC
*
49902151 TGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGTCACCTGATACTGATTC
49902176 TGATTCTG
1 TGATTCTG
49902184 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (25 bp):
TGATTCTGTCACCTGATACTGATTC
Found at i:49904182 original size:27 final size:27
Alignment explanation
Indices: 49904152--49904256 Score: 99
Period size: 27 Copynumber: 3.9 Consensus size: 27
49904142 TTTAGTTTAC
* *
49904152 TAAAATTACCGAAATACCCTTTG-TTTG
1 TAAAATTACAGAAATACCC-TCGATTTG
*
49904179 TAAAAATACTA-AAATACCCTCGATTTG
1 TAAAATTAC-AGAAATACCCTCGATTTG
* * *
49904206 TAAAATTACAGAAATACCTTCGACTTA
1 TAAAATTACAGAAATACCCTCGATTTG
*
49904233 TAAAATTACCA-AAGTACCCTCGAT
1 TAAAATTA-CAGAAATACCCTCGAT
49904257 ATACAGAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 3 0.05
27 59 0.92
28 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACAGAAATACCCTCGATTTG
Found at i:49904237 original size:54 final size:54
Alignment explanation
Indices: 49904152--49904256 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
49904142 TTTAGTTTAC
* * * * *
49904152 TAAAATTACCGAAATACCCTTTGTTTGTAAAAATACTAAAATACCCTCGATTTG
1 TAAAATTACAGAAATACCCTTCGCTTATAAAAATACCAAAATACCCTCGATTTG
* *
49904206 TAAAATTACAGAAATA-CCTTCGACTTATAAAATTACCAAAGTACCCTCGAT
1 TAAAATTACAGAAATACCCTTCG-CTTATAAAAATACCAAAATACCCTCGAT
49904257 ATACAGAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 5 0.12
54 38 0.88
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
TAAAATTACAGAAATACCCTTCGCTTATAAAAATACCAAAATACCCTCGATTTG
Found at i:49904277 original size:27 final size:27
Alignment explanation
Indices: 49904247--49904457 Score: 235
Period size: 27 Copynumber: 7.8 Consensus size: 27
49904237 ATTACCAAAG
*
49904247 TACCCTCGATATACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
49904274 TACCCTTAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
49904301 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
** *
49904328 TACCCTCGACATACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
49904355 TACCCTCGACTTACAGAATTACCTTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
49904382 TTCCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
49904409 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
49904436 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
49904458 TAAAATACCC
Statistics
Matches: 156, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 155 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:49904466 original size:27 final size:27
Alignment explanation
Indices: 49904409--49904688 Score: 170
Period size: 27 Copynumber: 10.3 Consensus size: 27
49904399 ATTACTGTTT
* ***
49904409 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAAAATTACTAAAA
* *
49904436 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
49904463 TACCCTTGATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
49904490 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACTAAAA
* * * *
49904517 TACCCTTGGTTTGTGAAATTA-TCGAAA
1 TACCCTTGATTTATAAAATTACT-AAAA
** * *
49904544 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * **
49904571 TACCCCTGATTTACAAAGTTACGGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
49904598 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAT-AAAATTACTA-AAA
* * * *
49904627 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * * * *
49904654 TACGCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
49904681 CACCCTTG
1 TACCCTTG
49904689 TAGGATGAAA
Statistics
Matches: 194, Mismatches: 51, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
26 1 0.01
27 170 0.88
28 7 0.04
29 16 0.08
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACTAAAA
Found at i:49904467 original size:54 final size:53
Alignment explanation
Indices: 49904220--49904484 Score: 134
Period size: 54 Copynumber: 4.9 Consensus size: 53
49904210 ATTACAGAAA
* * * * * * * * *
49904220 TACCTTCGACTTATAAAATTACCAAAGTACCCTCGATATACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAGAATTA-CTTTT
** * ***** * * * *
49904274 TACCCTTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAGAATTA-CTTTT
** * **** * * *
49904328 TACCCTCGACATACAGAATTACTGTTTTACCCTCGACTTACAGAATTACCTTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAGAATTA-CTTTT
* * * ****
49904382 TTCCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAGAATTACT-TTT
* *
49904436 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAGAATTAC
49904485 CAAAATACCC
Statistics
Matches: 167, Mismatches: 43, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
53 2 0.01
54 165 0.99
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAGAATTACTTTT
Found at i:49904474 original size:81 final size:82
Alignment explanation
Indices: 49904247--49904484 Score: 196
Period size: 81 Copynumber: 2.9 Consensus size: 82
49904237 ATTACCAAAG
* ** ** * * ** *
49904247 TACCCTCGATATACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGT-TTTACCCCTGAT
1 TACCCTCGACATACAGAATTACTATTTTACCCTCGACTTACAAAATTACC-TAAATACCCTTGAT
* *
49904311 TTACATAATTA-TCGTTT
65 TTATAAAATTACTCGTTT
* * *** * *
49904328 TACCCTCGACATACAGAATTACTGTTTTACCCTCGACTTACAGAATTACCTTTTTTCCCTCGATT
1 TACCCTCGACATACAGAATTACTATTTTACCCTCGACTTACAAAATTACCTAAATACCCTTGATT
*
49904393 TATAGAATTACT-GTTT
66 TATAAAATTACTCGTTT
* ** * *
49904409 TACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA-CTAAAATACCCTTGAT
1 TACCCTCGACATACAGAATTACTATTTTACCCTCGACTTACAAAATTACCT-AAATACCCTTGAT
*
49904473 TTGTAAAATTAC
65 TTATAAAATTAC
49904485 CAAAATACCC
Statistics
Matches: 129, Mismatches: 25, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
80 3 0.02
81 125 0.97
82 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (82 bp):
TACCCTCGACATACAGAATTACTATTTTACCCTCGACTTACAAAATTACCTAAATACCCTTGATT
TATAAAATTACTCGTTT
Found at i:49904494 original size:54 final size:54
Alignment explanation
Indices: 49904409--49904582 Score: 188
Period size: 54 Copynumber: 3.2 Consensus size: 54
49904399 ATTACTGTTT
* * * *** * ** *
49904409 TACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
*
49904463 TACCCTTGATTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAA
* * * *
49904517 TACCCTTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
*
49904571 TACCCCTGATTT
1 TACCCTTGATTT
49904583 ACAAAGTTAC
Statistics
Matches: 100, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 98 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
Found at i:49905615 original size:26 final size:26
Alignment explanation
Indices: 49905586--49905735 Score: 223
Period size: 26 Copynumber: 5.8 Consensus size: 26
49905576 GAGGAAGTGC
49905586 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
49905612 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
49905638 AAAAAGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
49905664 AAAAGGGCTTATGCCCCAGGTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
49905690 AAAAGGGCTTATGCCCCAAG-TTACCG
1 AAAAGGGCTTATGCCCC-AGTTTACCG
*
49905716 AAAAGGGCTT-TGACCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
49905736 ATTAAAGAGG
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
24 2 0.02
25 6 0.05
26 104 0.91
27 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:49905939 original size:42 final size:42
Alignment explanation
Indices: 49905880--49905971 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
49905870 TAGTCTCCCC
* ** *
49905880 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
49905922 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
49905964 AAATGGGC
1 AAATGGGC
49905972 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:49906030 original size:31 final size:31
Alignment explanation
Indices: 49905995--49906102 Score: 143
Period size: 31 Copynumber: 3.5 Consensus size: 31
49905985 CATTTACAGT
49905995 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
49906026 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
49906057 AAAGGCTTCGGCCCAGT--AATCG-TTAAATG-
1 AAAGGCTTCGGCCCAGTGAAAT-GATT-TATGA
49906086 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
49906103 ATATGTCAAG
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
29 21 0.30
30 4 0.06
31 45 0.64
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:49908118 original size:39 final size:39
Alignment explanation
Indices: 49908064--49908179 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
49908054 TTCAGTGATG
*
49908064 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTACGTGCTGGAAT
49908103 TATATCCGGACTTAGGGTCCGCAGGCTACGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTACGTGCTGGAAT
* * *
49908142 TATATCCGGACTTAAGGTCTGCGGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTACGTGCTGGAA
49908180 ATATGTCCAG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTACGTGCTGGAAT
Found at i:49908222 original size:78 final size:78
Alignment explanation
Indices: 49908064--49908227 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 78
49908054 TTCAGTGATG
* * * **
49908064 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
* *
49908129 TACGTGCTGGAAT
66 TACGAGCTAGAAT
* * * *
49908142 TATATCCGGACTTAAGGTCTGCGGGCTACGTGCTGGAAATATGTCCAGG-C-TAAAGTCCCGTAG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCC-GGACTTAAAGT-CCGCAG
* *
49908205 GCTTCGAGCTAGTAT
64 GCTACGAGCTAGAAT
49908220 TATA-CCGG
1 TATATCCGG
49908228 GTTTAAATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
77 8 0.11
78 61 0.86
79 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TACGAGCTAGAAT
Found at i:49912080 original size:93 final size:93
Alignment explanation
Indices: 49911921--49912092 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
49911911 GGATGGTTGA
* * *
49911921 GCATCCGAACTCGTTCAATTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAATTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
49911986 TGAGTCTGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * * *
49912014 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAATTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
49912079 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
49912093 CTTAGGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAATTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:49912094 original size:46 final size:46
Alignment explanation
Indices: 49911925--49912096 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
49911915 GGTTGAGCAT
* * * * *
49911925 CCGAACTCGTTCAATTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
49911971 CTGAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
49912016 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
49912064 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
49912097 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 57 0.55
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:49919337 original size:39 final size:39
Alignment explanation
Indices: 49919283--49919395 Score: 199
Period size: 39 Copynumber: 2.9 Consensus size: 39
49919273 TTCAGTGATG
49919283 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
49919322 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
49919361 TATATCCGGACTTAAGGTCTGCAGGCTACGTGCTG
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTG
49919396 AAAATATGTC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:49919422 original size:78 final size:78
Alignment explanation
Indices: 49919283--49919426 Score: 182
Period size: 78 Copynumber: 1.8 Consensus size: 78
49919273 TTCAGTGATG
* * * * **
49919283 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGTCCGCAGGC
49919348 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* * * *
49919361 TATATCCGGACTTAAGGTCTGCAGGCTACGTGCTGAAAATATGTCTGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGT-CCGCAGG
49919425 CT
65 CT
49919427 TCGAGCTGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 4 0.07
78 51 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTGCTGGAAT
Found at i:49919610 original size:28 final size:28
Alignment explanation
Indices: 49919566--49919624 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
49919556 CCATCGTCGA
49919566 GTAAGTACTATACATTTAAAATGTTCAG
1 GTAAGTACTATACATTTAAAATGTTCAG
*
49919594 GTAAGTACTATATATTTAAAATGTTCAG
1 GTAAGTACTATACATTTAAAATGTTCAG
49919622 GTA
1 GTA
49919625 CGTATTACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.37
Consensus pattern (28 bp):
GTAAGTACTATACATTTAAAATGTTCAG
Found at i:49925205 original size:20 final size:21
Alignment explanation
Indices: 49925161--49925205 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
49925151 GTCCTACTTC
*
49925161 ACATTTCCAACCCTTATATTC
1 ACATTTCCAACCCTTATATTA
49925182 ACATTTCCAA-CCTTGAT-TTA
1 ACATTTCCAACCCTT-ATATTA
49925202 ACAT
1 ACAT
49925206 ATAATTGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.31, C:0.29, G:0.02, T:0.38
Consensus pattern (21 bp):
ACATTTCCAACCCTTATATTA
Found at i:49925794 original size:11 final size:11
Alignment explanation
Indices: 49925778--49925802 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
49925768 AACATGAGAG
49925778 CTTTTTTTTTT
1 CTTTTTTTTTT
49925789 CTTTTTTTTTT
1 CTTTTTTTTTT
49925800 CTT
1 CTT
49925803 CTAGGTACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:49932796 original size:28 final size:28
Alignment explanation
Indices: 49932750--49932826 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 28
49932740 TTAGAATATG
* *
49932750 CCACAAAGGCCTTCC-TTTCTATAGGTCA
1 CCACAAA-GACTTCCATTTCTATAGATCA
**
49932778 CCACAAAGACTTCCATTTC-ATAGATTG
1 CCACAAAGACTTCCATTTCTATAGATCA
* *
49932805 CTACAAAGGCTTCCATTT-TATA
1 CCACAAAGACTTCCATTTCTATA
49932827 ACGTGTTCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
27 30 0.73
28 11 0.27
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
CCACAAAGACTTCCATTTCTATAGATCA
Found at i:49932991 original size:50 final size:50
Alignment explanation
Indices: 49932932--49933032 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
49932922 TTCTTTTAGT
** * *
49932932 TCTTTCCATATGATGCCATAACCCACC-AGTAATGGTCTTACACAATATGG
1 TCTTTCCATAAAACGCCATAACCCACCAACT-ATGGTCTTACACAATATGG
* *
49932982 TCTTTCCATAAAACGCCATAGCCCACCAACTATGGTCTTACTCAATATGG
1 TCTTTCCATAAAACGCCATAACCCACCAACTATGGTCTTACACAATATGG
49933032 T
1 T
49933033 GCCATGAGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
50 42 0.95
51 2 0.05
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (50 bp):
TCTTTCCATAAAACGCCATAACCCACCAACTATGGTCTTACACAATATGG
Found at i:49945007 original size:12 final size:12
Alignment explanation
Indices: 49944990--49945019 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
49944980 CTCGCACACA
49944990 CGTGTGCTAGGC
1 CGTGTGCTAGGC
49945002 CGTGTGCTAGGC
1 CGTGTGCTAGGC
49945014 CGTGTG
1 CGTGTG
49945020 AAGCTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.43, T:0.27
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:49950354 original size:29 final size:30
Alignment explanation
Indices: 49950294--49950355 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
49950284 ATTTATTTTA
*
49950294 TTGTTAATTTTCTTATTATTTTAAAGGTAT
1 TTGTTAATTTTCTTATTATTTTAAAGGCAT
*
49950324 TTGTT-ATTTTTTTATTATTTTAGAA-GCAT
1 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
49950353 TTG
1 TTG
49950356 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.24, C:0.03, G:0.11, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGGCAT
Found at i:49955298 original size:27 final size:27
Alignment explanation
Indices: 49955267--49955320 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
49955257 AAAATTATGC
49955267 CTTCAACTGTTTTAGAAATTTTAGTTT
1 CTTCAACTGTTTTAGAAATTTTAGTTT
49955294 CTTCAACTGTTTTAGAAATTTTAGTTT
1 CTTCAACTGTTTTAGAAATTTTAGTTT
49955321 TCACTTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (27 bp):
CTTCAACTGTTTTAGAAATTTTAGTTT
Found at i:49957054 original size:21 final size:23
Alignment explanation
Indices: 49957029--49957082 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
49957019 TTATATTAGT
49957029 ATATTTTATATTG-TTT-AAATC
1 ATATTTTATATTGTTTTAAAATC
* *
49957050 GTATTTTA-ATTGTTTTAAAATT
1 ATATTTTATATTGTTTTAAAATC
49957072 ATATTTTATAT
1 ATATTTTATAT
49957083 AACTTATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
21 10 0.37
22 11 0.41
23 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (23 bp):
ATATTTTATATTGTTTTAAAATC
Found at i:49959404 original size:24 final size:22
Alignment explanation
Indices: 49959368--49959417 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
49959358 AATTAACTTA
*
49959368 AAAATCAATAAAA-TAAAATTATT
1 AAAATCAACAAAACT-AAATTA-T
49959391 AAAATCTAACAAAACTAAATTAT
1 AAAATC-AACAAAACTAAATTAT
49959414 AAAA
1 AAAA
49959418 CAAACTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 11 0.46
24 12 0.50
25 1 0.04
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAATCAACAAAACTAAATTAT
Found at i:49961463 original size:47 final size:46
Alignment explanation
Indices: 49961390--49961660 Score: 211
Period size: 47 Copynumber: 5.8 Consensus size: 46
49961380 ATTTGTTTGT
* *
49961390 GAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCACATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCC-CATTACGA
49961436 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGACATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCCATT-AC--GA
* * **
49961484 GAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCC-CATTACG-A
* *
49961531 -AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGG-CTATGA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCCATTACGA
* * * ** *
49961573 TTTTAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATA--T
1 ---GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-CCAT-TACGA
*
49961623 GAGCCAGTGTAAGATCATGTTTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
49961661 ACCTTACCCA
Statistics
Matches: 186, Mismatches: 21, Indels: 35
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 67 0.36
47 74 0.40
48 30 0.16
49 2 0.01
50 2 0.01
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCCATTACGA
Found at i:49961610 original size:94 final size:94
Alignment explanation
Indices: 49961390--49961661 Score: 315
Period size: 94 Copynumber: 2.9 Consensus size: 94
49961380 ATTTGTTTGT
* *
49961390 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTACG-AGAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAATACGTA-AGCCAGTGTAAGACCAT
49961454 GTCTGGGACATGGCATCGGCATTGACATGA
65 GTCTGGGACATGGCATCGGCATTGACATGA
*
49961484 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGACGTAAGCCAGTGTAAGA-CATG
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAATACGTAAGCCAGTGTAAGACCATG
* **
49961548 TCTGGGACAT-GCATCGGC-TATGAGATTT
66 TCTGGGACATGGCATCGGCAT-TGACATGA
* * * * * * *
49961576 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATA--TGAGCCAGTGTAAGAT
1 GAGCT-AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCA-ATACGTAAGCCAGTGTAAGAC
*
49961638 CATGTTTGGGACATGGCATCGGCA
62 CATGTCTGGGACATGGCATCGGCA
49961662 CCTTACCCAC
Statistics
Matches: 155, Mismatches: 14, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
91 2 0.01
92 24 0.15
93 41 0.26
94 77 0.50
95 11 0.07
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAATACGTAAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATTGACATGA
Found at i:49962827 original size:21 final size:20
Alignment explanation
Indices: 49962797--49962835 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
49962787 TCGAGTTGGA
*
49962797 CACACGAGCGTGTTGCCCTTC
1 CACACAAGCGTG-TGCCCTTC
49962818 CACACAAGCGTGTGCCCT
1 CACACAAGCGTGTGCCCT
49962836 ATTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (20 bp):
CACACAAGCGTGTGCCCTTC
Found at i:49967625 original size:19 final size:19
Alignment explanation
Indices: 49967594--49967644 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
49967584 CTATAGAAAC
49967594 TCACAATTT-CAA-TTATT
1 TCACAATTTACAATTTATT
49967611 TCACACATTTACAATTTATT
1 TCACA-ATTTACAATTTATT
*
49967631 TTACAACTTTACAA
1 TCACAA-TTTACAA
49967645 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (19 bp):
TCACAATTTACAATTTATT
Found at i:49970763 original size:41 final size:41
Alignment explanation
Indices: 49970717--49970931 Score: 118
Period size: 41 Copynumber: 5.1 Consensus size: 41
49970707 GCTTTAAGCT
* *
49970717 GGTGAATATTATTGGGCTCTGAGCCTAGCAGGCGTAATACC
1 GGTGAATATTATCGGGCTCTGAGCCTAGCAGGCGTAATGCC
* * * * * *
49970758 GGTGAA-ATGATATCGGACT-TAAAGGTCTAGCAAGCTTTAA-GCT
1 GGTGAATAT--TATCGGGCTCT-GA-GCCTAGCAGGC-GTAATGCC
*
49970801 GGTGAATATTATCGGGCTCCGAGCCTAGCAGGCGTAATGCC
1 GGTGAATATTATCGGGCTCTGAGCCTAGCAGGCGTAATGCC
* * * * * *
49970842 GGTGAA-ATGATATCGGACT-TAAAGGTCTAGCAAGCTTTAA-GCT
1 GGTGAATAT--TATCGGGCTCT-GA-GCCTAGCAGGC-GTAATGCC
** * *
49970885 GGTGAATATTATCAAGCTCCGAGCCTAGCAAGCGTAATGCC
1 GGTGAATATTATCGGGCTCTGAGCCTAGCAGGCGTAATGCC
*
49970926 GATGAA
1 GGTGAA
49970932 ATGATATCGG
Statistics
Matches: 127, Mismatches: 31, Indels: 32
0.67 0.16 0.17
Matches are distributed among these distances:
40 10 0.08
41 41 0.32
42 33 0.26
43 33 0.26
44 10 0.08
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (41 bp):
GGTGAATATTATCGGGCTCTGAGCCTAGCAGGCGTAATGCC
Found at i:49970774 original size:84 final size:84
Alignment explanation
Indices: 49970653--49970962 Score: 530
Period size: 84 Copynumber: 3.7 Consensus size: 84
49970643 TTCGAGCTTT
* *
49970653 GAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGTCTATCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
* *
49970718 GTGAATATTATTGGGCTCT
66 GTGAATATTATCGGGCTCC
*
49970737 GAGCCTAGCAGGCGTAATACCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
49970802 GTGAATATTATCGGGCTCC
66 GTGAATATTATCGGGCTCC
49970821 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
**
49970886 GTGAATATTATCAAGCTCC
66 GTGAATATTATCGGGCTCC
* * *
49970905 GAGCCTAGCAAGCGTAATGCCGATGAAATGATATCGGACTTAAAGGTCTAGCAGGCTT
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTT
49970963 ATTGCCAGTG
Statistics
Matches: 215, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 215 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (84 bp):
GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
GTGAATATTATCGGGCTCC
Found at i:49970856 original size:42 final size:42
Alignment explanation
Indices: 49970653--49970944 Score: 163
Period size: 42 Copynumber: 7.0 Consensus size: 42
49970643 TTCGAGCTTT
* * *
49970653 GAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTA
1 GAGCCTAGCAAGCGTAATGCCGGTGAAATGATATCGGACTCA
* * * * * * * *
49970695 AAGGTCTATCAAGCTTTAA-GCTGGTG-AAT-ATTATTGGGCTCT
1 GA-GCCTAGCAAGC-GTAATGCCGGTGAAATGA-TATCGGACTCA
* * *
49970737 GAGCCTAGCAGGCGTAATACCGGTGAAATGATATCGGACTTA
1 GAGCCTAGCAAGCGTAATGCCGGTGAAATGATATCGGACTCA
* * * * * *
49970779 AAGGTCTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCGGGCTCC
1 GA-GCCTAGCAAGC-GTAATGCCGGTGAAATGA-TATCGGACTCA
* *
49970821 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTA
1 GAGCCTAGCAAGCGTAATGCCGGTGAAATGATATCGGACTCA
* * * * * *
49970863 AAGGTCTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATC-AAGCTCC
1 GA-GCCTAGCAAGC-GTAATGCCGGTGAAATGA-TATCGGA-CTCA
*
49970905 GAGCCTAGCAAGCGTAATGCCGATGAAATGATATCGGACT
1 GAGCCTAGCAAGCGTAATGCCGGTGAAATGATATCGGACT
49970945 TAAAGGTCTA
Statistics
Matches: 178, Mismatches: 52, Indels: 40
0.66 0.19 0.15
Matches are distributed among these distances:
40 9 0.05
41 47 0.26
42 66 0.37
43 47 0.26
44 9 0.05
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (42 bp):
GAGCCTAGCAAGCGTAATGCCGGTGAAATGATATCGGACTCA
Found at i:49975546 original size:42 final size:42
Alignment explanation
Indices: 49975499--49975650 Score: 157
Period size: 42 Copynumber: 3.6 Consensus size: 42
49975489 AATCATACCA
* ** *
49975499 ATGCCATATCCCAAATATGGTCTTACATGGGATCTCATTTCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * * *
49975541 ATGCCA-ATACCCAGCTATGGTCTTACA-CAATTCTTATATCG
1 ATGCCATAT-CCCAGATATGGTCTTACATGAAATCTCATATCG
* * * *
49975582 ATGCCATGTCCTAGACATGGTCCTACATGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCAT-ATCG
49975624 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
49975651 CGTAAACTCA
Statistics
Matches: 86, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
41 30 0.35
42 54 0.63
43 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:49977375 original size:56 final size:56
Alignment explanation
Indices: 49977308--49977420 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
49977298 GAAAGTAGTG
49977308 TAAGTTTTATAACTTAATAAGTTGACATATAATAATAAGAAATTTAATTAACAATA
1 TAAGTTTTATAACTTAATAAGTTGACATATAATAATAAGAAATTTAATTAACAATA
49977364 TAAGTTTTATAACTTAATAAGTTGACATATAATAATAAGAAATTTAATTAACAATA
1 TAAGTTTTATAACTTAATAAGTTGACATATAATAATAAGAAATTTAATTAACAATA
49977420 T
1 T
49977421 TAACCCATTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (56 bp):
TAAGTTTTATAACTTAATAAGTTGACATATAATAATAAGAAATTTAATTAACAATA
Found at i:49979740 original size:56 final size:56
Alignment explanation
Indices: 49979649--49979771 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
49979639 GAGATTGGCG
* * *
49979649 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
49979706 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
49979761 CTGAGTGTGCG
1 CTAAGTGTGCG
49979772 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:49979758 original size:27 final size:28
Alignment explanation
Indices: 49979649--49979771 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
49979639 GAGATTGGCG
* * * *
49979649 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
49979678 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49979706 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49979734 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
49979761 CTGAGTGTGCG
1 CTAAGTGTGCG
49979772 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:49979782 original size:27 final size:27
Alignment explanation
Indices: 49979674--49979784 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
49979664 TAAATTGTAC
* * *
49979674 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
49979702 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
49979730 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
49979757 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
49979784 A
1 A
49979785 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:49983996 original size:29 final size:28
Alignment explanation
Indices: 49983960--49984037 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
49983950 GTCATGAATT
49983960 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
49983990 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
49984017 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
49984038 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:49984304 original size:173 final size:174
Alignment explanation
Indices: 49983990--49984316 Score: 575
Period size: 173 Copynumber: 1.9 Consensus size: 174
49983980 AAATTGTACA
* *
49983990 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
49984055 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
49984120 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
49984164 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
49984229 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
49984293 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
49984317 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
173 81 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:49990017 original size:56 final size:56
Alignment explanation
Indices: 49989926--49990048 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
49989916 GAGATTGGCG
* * *
49989926 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
49989983 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
49990038 CTGAGTGTGCG
1 CTAAGTGTGCG
49990049 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:49990035 original size:27 final size:28
Alignment explanation
Indices: 49989926--49990048 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
49989916 GAGATTGGCG
* * * *
49989926 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
49989955 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49989983 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49990011 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
49990038 CTGAGTGTGCG
1 CTAAGTGTGCG
49990049 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:49990059 original size:27 final size:27
Alignment explanation
Indices: 49989951--49990061 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
49989941 TAAATTGTAC
* * *
49989951 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
49989979 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
49990007 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
49990034 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
49990061 A
1 A
49990062 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:49994313 original size:19 final size:20
Alignment explanation
Indices: 49994289--49994329 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
49994279 CCCCTTATTA
49994289 AACATAAACAAA-T-AAAATG
1 AACATAAA-AAATTAAAAATG
49994308 AACATAAAAAATTAAAAATG
1 AACATAAAAAATTAAAAATG
49994328 AA
1 AA
49994330 ATTAAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.15
19 9 0.45
20 8 0.40
ACGTcount: A:0.71, C:0.07, G:0.05, T:0.17
Consensus pattern (20 bp):
AACATAAAAAATTAAAAATG
Found at i:49996026 original size:42 final size:44
Alignment explanation
Indices: 49995906--49996052 Score: 146
Period size: 44 Copynumber: 3.4 Consensus size: 44
49995896 AGTGTTATCA
* *
49995906 TGTAAGACTATGTCTGGGAC-GTTGGCATTGACT-TATGATTTACG
1 TGTAAGACCATGTCTGGGACAG-TGGCATTGA-TATTTGATTTACG
*
49995950 TGTAAGACCATGTCTGGGACA-TCGACATTG-TATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACAGT-GGCATTGATATTTGATTTACG
* * *
49995992 TGTAA-ACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGATTTACG
**
49996034 TGTAAGACCACATCTGGGA
1 TGTAAGACCATGTCTGGGA
49996053 TGTTGGCATT
Statistics
Matches: 86, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
41 21 0.24
42 22 0.26
43 18 0.21
44 25 0.29
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGATTTACG
Found at i:49998704 original size:40 final size:40
Alignment explanation
Indices: 49998642--49998859 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
49998632 AAGCCAAGTA
* * * *
49998642 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
49998681 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
49998721 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
49998761 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
49998801 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
49998841 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
49998860 TTATCATCCA
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 151 0.92
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50006950 original size:40 final size:40
Alignment explanation
Indices: 50006888--50007105 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
50006878 AAGCCAAGTA
* * * *
50006888 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
50006927 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50006967 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50007007 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50007047 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50007087 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50007106 TTATCATCCA
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 13 0.08
40 155 0.92
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50019360 original size:39 final size:39
Alignment explanation
Indices: 50019303--50019410 Score: 144
Period size: 39 Copynumber: 2.7 Consensus size: 39
50019293 TGATATTAGG
* * *
50019303 AACATATCCGAACTTGAGGTCCGCAGGCTACGTGTTGGA
1 AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
50019342 AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
1 AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
* * * *
50019381 AATATATCCGGGCCTAAAGTCCCGCAGGCT
1 AACATATCCGGACCTGAGGT-CCGCAGGCT
50019411 TTGTGCTAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 52 0.85
40 9 0.15
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (39 bp):
AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
Found at i:50022192 original size:126 final size:125
Alignment explanation
Indices: 50021967--50022363 Score: 474
Period size: 126 Copynumber: 3.0 Consensus size: 125
50021957 TAGGGCAACG
* *
50021967 CTTTCCTAAGTATTAGGATAGACTTGCCAACATACGCATTGGCCAACTCTTTGTATAAGGGTTGG
1 CTTTCCTAAGTATTGGGATAGACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGGGTTGG
* * *
50022032 AATATGCATGCCTAAGGTAACACTTAAATAAGAGTTGGCTTTGTCTAGTCTTAAGATGACA
66 GATATGTATGCCTAAGG-AACACTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACA
* *
50022093 CTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCTTTGTATAAGGGTTGG
1 CTTTCCTAAGTATTGGGATAGACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGGGTTGG
50022158 GATATGTATGCCTAAGGCAATC-CTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACA
66 GATATGTATGCCTAAGG-AA-CACTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACA
* * * *
50022219 CTTTTGGGGCGACACTTTCTTACGTATTGGGATAGATTTGCTAACATATGCTTTGGCCAACTCTT
1 C-TTT---------C---C-TAAGTATTGGGATAGACTTGCCAACATACGCTTTGGCCAACTCTT
* * *
50022284 TGTATAAGGGTTGGGATATGTATGCTTAAGGAA-ACTATTAAATAAGATTTGGATTTTGTCTAGT
52 TGTATAAGGGTTGGGATATGTATGCCTAAGGAACAC--TTAAATAAGAGTTGG-CTTTGTCTAGT
50022348 CCTAAGATGACA
114 CCTAAGATGACA
50022360 CTTT
1 CTTT
50022364 TGGGGAGACA
Statistics
Matches: 235, Mismatches: 17, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
126 117 0.50
127 4 0.02
136 1 0.00
138 1 0.00
139 3 0.01
140 86 0.37
141 23 0.10
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (125 bp):
CTTTCCTAAGTATTGGGATAGACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGGGTTGG
GATATGTATGCCTAAGGAACACTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACA
Found at i:50022414 original size:141 final size:138
Alignment explanation
Indices: 50022089--50022440 Score: 501
Period size: 141 Copynumber: 2.5 Consensus size: 138
50022079 GTCTTAAGAT
* *
50022089 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCTTTGTATAAGGG
1 GACAC-TTCCTTAGCGTTGGGATAGACTTG-CAACATACACTTTGGCCAACTCTTTGTATAAGGG
* *
50022154 TTGGGATATGTATGCCTAAGGCAATCCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACA
64 TTGGGATATGTATGCCTAAGGAAATCATTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACA
*
50022219 CTTTTGGGGC
129 CTTTTGGGGA
* * **
50022229 GACACTTTCTTA-CGTATTGGGATAGATTTGCTAACATATGCTTTGGCCAACTCTTTGTATAAGG
1 GACACTTCCTTAGCG--TTGGGATAGACTTGC-AACATACACTTTGGCCAACTCTTTGTATAAGG
* * *
50022293 GTTGGGATATGTATGCTTAAGGAAA-CTATTAAATAAGATTTGGATTTTGTCTAGTCCTAAGATG
63 GTTGGGATATGTATGCCTAAGGAAATC-ATTAAATAAGAGTTGG-CTTTGTCTAGTCCTAAGATG
50022357 ACACTTTTGGGGA
126 ACACTTTTGGGGA
50022370 GACACTTGCCTTAGCGTTGGGATAGACTTGTCAACATACACTTTGGCCAACTCTTTGTATAAGGG
1 GACACTT-CCTTAGCGTTGGGATAGACTTG-CAACATACACTTTGGCCAACTCTTTGTATAAGGG
50022435 TTGGGA
64 TTGGGA
50022441 CATGCATAAA
Statistics
Matches: 188, Mismatches: 16, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
138 1 0.01
139 7 0.04
140 85 0.45
141 88 0.47
142 5 0.03
143 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (138 bp):
GACACTTCCTTAGCGTTGGGATAGACTTGCAACATACACTTTGGCCAACTCTTTGTATAAGGGTT
GGGATATGTATGCCTAAGGAAATCATTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGATGACACT
TTTGGGGA
Found at i:50024740 original size:29 final size:28
Alignment explanation
Indices: 50024684--50024797 Score: 104
Period size: 29 Copynumber: 4.0 Consensus size: 28
50024674 GTGAGTAAGA
* * *
50024684 ATATGAATGTGACTGGACCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAACGGGCC
50024712 ATATAAATGTGATTTGGGCCTAACGGGCC
1 ATATAAATGTGA-TTGGGCCTAACGGGCC
* * *
50024741 ATATACA-GATGATTTCGGCCTAATGGGCC
1 ATATAAATG-TGA-TTGGGCCTAACGGGCC
* * * *
50024770 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAACGGGCC
50024798 GGATACAGGT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 26 0.36
29 46 0.64
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAACGGGCC
Found at i:50031031 original size:46 final size:48
Alignment explanation
Indices: 50030981--50031247 Score: 223
Period size: 46 Copynumber: 5.6 Consensus size: 48
50030971 AAAGAGTGAT
* *
50030981 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGCC
* * * *
50031027 AGTGTAAG-GCATGTCTAGGACAT-GCATC-GACTATGAGATGT--GTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGATGTAAGCC
* * * *
50031071 AGTGTAAGACCATGTCT-GAGACATGGCATCGACAC-AGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTAG-GACATGGCATCGGC-CTCGAGATGT-A-AGCC
* * * * *
50031121 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATGACG-ATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA-GATGTA-AGCC
* * * *
50031170 AGTGTAAGACCATGGCTAGGACATGGCATC-GACTTGAGATTTAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGCC
50031217 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGACCATGTCTAGGACATGGCATCG
50031248 ACATTCTACC
Statistics
Matches: 174, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 43 0.25
47 34 0.20
48 6 0.03
49 31 0.18
50 31 0.18
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGCC
Found at i:50031180 original size:99 final size:96
Alignment explanation
Indices: 50031016--50031243 Score: 256
Period size: 99 Copynumber: 2.4 Consensus size: 96
50031006 ATCGGCCTCG
* * * * *
50031016 AGATGTAAGCCAGTGTAAG-GCATGTCTAGGACAT-GCATC-GACT--ATGA-GATGTGTCAGTG
1 AGATTTAAGCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCAATGACGAT-AGTCAGTG
*
50031075 TAAGACCATGTCT-GAGACATGGCATCGAC-AC
65 TAAGACCATGGCTAG-GACATGGCATCGACTAC
* *
50031106 AGATATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATGACGATAGTCA
1 AGAT-T-T-A-AGCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCAATGACGATAGTCA
**
50031171 GTGTAAGACCATGGCTAGGACATGGCATCGACTTG
62 GTGTAAGACCATGGCTAGGACATGGCATCGACTAC
50031206 AGATTTAAGCCAGTGTAAGACCATGTCTAGGACATGGC
1 AGATTTAAGCCAGTGTAAGACCATGTCTAGGACATGGC
50031244 ATCGACATTC
Statistics
Matches: 114, Mismatches: 12, Indels: 18
0.79 0.08 0.12
Matches are distributed among these distances:
90 4 0.04
92 1 0.01
93 1 0.01
94 11 0.10
95 13 0.11
96 33 0.29
97 4 0.04
98 1 0.01
99 38 0.33
100 8 0.07
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (96 bp):
AGATTTAAGCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCAATGACGATAGTCAGTGT
AAGACCATGGCTAGGACATGGCATCGACTAC
Found at i:50032811 original size:31 final size:31
Alignment explanation
Indices: 50032776--50032839 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
50032766 TCCTGACGAG
50032776 ATAAATTGTGTTTCATTTATATAGTAAATAC
1 ATAAATTGTGTTTCATTTATATAGTAAATAC
50032807 ATAAATTGTGTTTCATTTATATAGTAAATAC
1 ATAAATTGTGTTTCATTTATATAGTAAATAC
50032838 AT
1 AT
50032840 CCTGACGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (31 bp):
ATAAATTGTGTTTCATTTATATAGTAAATAC
Found at i:50037558 original size:50 final size:48
Alignment explanation
Indices: 50037354--50037676 Score: 222
Period size: 46 Copynumber: 6.8 Consensus size: 48
50037344 GGGTTGTTAT
* * ** * *
50037354 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGA
* * * *
50037402 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCA-AGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACAGATATG-A
* * * *
50037449 -AGCCAGTGTAAGA-CATGTCGGGGACAT-GCATCGGTTAC-GAGAT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAGATATGA
* * *
50037492 GTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATA--TGA
* * * * *
50037542 GAGCTAGTGTACGACCATGCCTGGGACATGGCGTCGGC-CTCGATAAAGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGAT-ATGA
* ** *
50037591 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTCAGATAT--
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATGA
* *
50037638 GAGCCAGTGTAAGACCATGTCTCGGACATGGCATCGGCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
50037677 TTCTACCCCA
Statistics
Matches: 216, Mismatches: 41, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
44 10 0.05
45 16 0.07
46 53 0.25
47 48 0.22
48 15 0.07
49 34 0.16
50 38 0.18
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGA
Found at i:50043488 original size:24 final size:23
Alignment explanation
Indices: 50043453--50043497 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
50043443 GACACACCAT
50043453 AGCTCTTACGAGCATCCTGTTATA
1 AGCTCTTACGAG-ATCCTGTTATA
*
50043477 AGCTCTCT-CGAGTTCCTGTTA
1 AGCTCT-TACGAGATCCTGTTA
50043498 CATGGTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 10 0.53
25 1 0.05
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (23 bp):
AGCTCTTACGAGATCCTGTTATA
Found at i:50044896 original size:42 final size:42
Alignment explanation
Indices: 50044850--50044934 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
50044840 AGAGGCAAGA
* *
50044850 GCGTGTGTCTCATTTGTGTGTGACACATGGCCTAGCACACGG
1 GCGTGTGTCTCAGTTGTGTGTGACACACGGCCTAGCACACGG
*
50044892 GCGTGTGTCTCAGTTGTGTGTGAGACACGGCCTAGCACACGG
1 GCGTGTGTCTCAGTTGTGTGTGACACACGGCCTAGCACACGG
50044934 G
1 G
50044935 TGTATGACTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.16, C:0.24, G:0.34, T:0.26
Consensus pattern (42 bp):
GCGTGTGTCTCAGTTGTGTGTGACACACGGCCTAGCACACGG
Found at i:50044953 original size:42 final size:42
Alignment explanation
Indices: 50044865--50044953 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
50044855 TGTCTCATTT
* * * **
50044865 GTGTGTGACACATGGCCTAGCACACGGGCGTGTGTCTCAGTT
1 GTGTGTGACACACGGCCTAGCACACGGGCGTATGACTCAGCC
* * **
50044907 GTGTGTGAGACACGGCCTAGCACACGGGTGTATGACTTGGCC
1 GTGTGTGACACACGGCCTAGCACACGGGCGTATGACTCAGCC
50044949 GTGTG
1 GTGTG
50044954 AATCATGCAC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.17, C:0.22, G:0.36, T:0.25
Consensus pattern (42 bp):
GTGTGTGACACACGGCCTAGCACACGGGCGTATGACTCAGCC
Found at i:50050534 original size:26 final size:23
Alignment explanation
Indices: 50050508--50050553 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
50050498 TTAAAAGAAA
50050508 AAAATATCATATTATTATCATCT
1 AAAATATCATATTATTATCATCT
50050531 AAAATATCATATTATTATCATCT
1 AAAATATCATATTATTATCATCT
50050554 TCTTCCCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (23 bp):
AAAATATCATATTATTATCATCT
Found at i:50053606 original size:50 final size:50
Alignment explanation
Indices: 50053384--50053611 Score: 203
Period size: 50 Copynumber: 4.6 Consensus size: 50
50053374 CTGGTACGTA
* * *
50053384 TAGTAGCCTGTACTTAGTACTACACATGCGA-CGAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACTATCTAGTACACG
* * * * *
50053433 TAGTAGCTTGCAATTAGTACTACACATGTGACCTAACCATCT-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACTATCTAG-TACACG
* * * * * ** *
50053483 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT-TGTCAGGTAGGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACTATCT-A-GTACACG
* * * *
50053534 TAGT-GACCTGCACTTAGAACTACACATGCGACCTAACTATCTAGTATATG
1 TAGTAG-CCTGCACTTAGTACTACACATGCGACCGAACTATCTAGTACACG
*
50053584 TAGTACCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
50053612 TTCTCACAAT
Statistics
Matches: 141, Mismatches: 30, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
49 30 0.21
50 74 0.52
51 34 0.24
52 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACTATCTAGTACACG
Found at i:50059491 original size:31 final size:31
Alignment explanation
Indices: 50059418--50059491 Score: 73
Period size: 31 Copynumber: 2.4 Consensus size: 31
50059408 ACATCAAATG
* *
50059418 ATTAATTTCATATACATGTATCATCAAATTCC
1 ATTAA-TTCATATACATGTAACAACAAATTCC
*
50059450 ATT--TTCCATATAACATGTAACAAC-ATTTCC
1 ATTAATT-CATAT-ACATGTAACAACAAATTCC
50059480 ATTAATTCATAT
1 ATTAATTCATAT
50059492 GTATGCCTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
29 2 0.06
30 13 0.37
31 15 0.43
32 5 0.14
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (31 bp):
ATTAATTCATATACATGTAACAACAAATTCC
Found at i:50059702 original size:25 final size:25
Alignment explanation
Indices: 50059664--50059731 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
50059654 TGTGAATTGA
* * * * *
50059664 TATGCTCACTCGAGTTGTAGATCGG
1 TATGCTTACACGAGCTGTAAATCAG
*
50059689 TATGCTTTCACGAGCTGTAAATCAG
1 TATGCTTACACGAGCTGTAAATCAG
50059714 TATGCTTACACGAGCTGT
1 TATGCTTACACGAGCTGT
50059732 GGGTAGAAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (25 bp):
TATGCTTACACGAGCTGTAAATCAG
Found at i:50060489 original size:24 final size:22
Alignment explanation
Indices: 50060446--50060490 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
50060436 CATTTATTTG
* *
50060446 AGCTAGCTAAATTTCATGTGTT
1 AGCTAGCTAAAATTAATGTGTT
50060468 AGCTAGTCTAAAATTAATTGTGT
1 AGCTAG-CTAAAATTAA-TGTGT
50060491 CCTATTTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 8 0.42
24 5 0.26
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (22 bp):
AGCTAGCTAAAATTAATGTGTT
Found at i:50062712 original size:14 final size:12
Alignment explanation
Indices: 50062705--50062760 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
50062695 AGAACGAGGC
50062705 AAAAAGAAAGAG
1 AAAAAGAAAGAG
*
50062717 AAAAAGAAATCA-
1 AAAAAGAAA-GAG
50062729 AAAAAG-AA-A-
1 AAAAAGAAAGAG
50062738 AAAAAGAAAGAG
1 AAAAAGAAAGAG
50062750 AGAAAA-AAAGA
1 A-AAAAGAAAGA
50062761 ATTAAGAGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 7 0.18
10 2 0.05
11 3 0.08
12 21 0.55
13 5 0.13
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (12 bp):
AAAAAGAAAGAG
Found at i:50064921 original size:5 final size:5
Alignment explanation
Indices: 50064913--50064939 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
50064903 AAATTAAATG
50064913 TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TT
50064940 ATTACAGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:50068979 original size:42 final size:42
Alignment explanation
Indices: 50068933--50069042 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
50068923 AGTTTATGTT
* ** *
50068933 TAAGACCATATCTGGGATATGGCATCGT-TATGAGATTTCGTG
1 TAAGACCATATCTGGGATATGGCAT-ATATATGAGATCCCATG
* *
50068975 TAAGACCATAGCTGGGCTATTGGCATATATATGAGATCCCATG
1 TAAGACCATATCTGGGATA-TGGCATATATATGAGATCCCATG
* *
50069018 TAAGACCATATCTGAGATATTGCAT
1 TAAGACCATATCTGGGATATGGCAT
50069043 TGGAACGATT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 23 0.41
43 33 0.59
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATATATATGAGATCCCATG
Found at i:50069588 original size:20 final size:20
Alignment explanation
Indices: 50069563--50069604 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
50069553 AAATGACCAT
50069563 TTGGTATTGGCCAAGATTGG
1 TTGGTATTGGCCAAGATTGG
50069583 TTGGTATTGGCCAAGATTGG
1 TTGGTATTGGCCAAGATTGG
50069603 TT
1 TT
50069605 AAGTATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.10, G:0.33, T:0.38
Consensus pattern (20 bp):
TTGGTATTGGCCAAGATTGG
Found at i:50071680 original size:39 final size:39
Alignment explanation
Indices: 50071269--50071680 Score: 423
Period size: 39 Copynumber: 10.6 Consensus size: 39
50071259 TATATAATTA
* * *
50071269 TACCCTTGATCGCACTTATGTGCCCCTATTGTACTTCGA
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* ** * * * * *
50071308 TACCCTTGATTACACCTATGTGCTCTTGTTGTACTTTGA
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* *
50071347 TACCCCTGATCGCACTTATGTGCCCTTATTGTACTTCGG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* * * *
50071386 TACCCCTGATCGCACGTACGTGCCTCTGTTGTACTTCAG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* * * *
50071425 TACCCCTGATTGCACTTACGTGCCCCTGATGTACTTCGA
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* *
50071464 TACCCATGATCGCACCTATGTGCCCCTGTTGTACTTCGG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* * * * * *
50071503 TACCCCTGATTGCAGTTACGT-TCCCTGATGTACTTCAG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* * * * *
50071541 TACCCCTGATTGTACCTACGTGCCCTTGTTGTACTTCGG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* * *
50071580 TACCCCTAATTGCACTTATGTG-CCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
* * *
50071618 TACCTCTGATCACACTTACGTGCCCCTGTTGTACTTCGG
1 TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
** *
50071657 TACCCCAAATCGCACTTTTGTGCC
1 TACCCCTGATCGCACTTATGTGCC
50071681 GTAGTTACAT
Statistics
Matches: 305, Mismatches: 66, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
38 63 0.21
39 242 0.79
ACGTcount: A:0.17, C:0.31, G:0.18, T:0.35
Consensus pattern (39 bp):
TACCCCTGATCGCACTTATGTGCCCCTGTTGTACTTCGG
Found at i:50077790 original size:27 final size:27
Alignment explanation
Indices: 50077745--50077808 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
50077735 GGGCATAATC
* * **
50077745 GTCATTCTACCATATAGGGTTATTACA
1 GTCATTTTACCATAGAGGGCCATTACA
* *
50077772 GTCATTTTACCCTAGAGGGCCATTACG
1 GTCATTTTACCATAGAGGGCCATTACA
50077799 GTCATTTTAC
1 GTCATTTTAC
50077809 ACTATAATGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATAGAGGGCCATTACA
Found at i:50081413 original size:29 final size:29
Alignment explanation
Indices: 50081371--50081489 Score: 177
Period size: 29 Copynumber: 4.1 Consensus size: 29
50081361 GAAAGCATGT
50081371 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50081400 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
50081429 ATACGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
50081458 ATATGAATGAGA-TTGGGCATAGTGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50081486 ATAT
1 ATAT
50081490 CCATGTATAT
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 17 0.21
29 65 0.79
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:50091043 original size:29 final size:27
Alignment explanation
Indices: 50090968--50091049 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
50090958 GCGAGGATGC
* * *
50090968 CAGATATTATGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGATA
* *
50090995 CAGATATTGTGGCTAGGCCACCAGA-A
1 CAGATATTGTGGCGAAGCCACCAGATA
*
50091021 CAGATATATATGTGGCGAAGCCATCAGAT
1 CAG--ATAT-TGTGGCGAAGCCACCAGAT
50091050 TGCAGCGAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
26 4 0.09
27 20 0.47
28 4 0.09
29 15 0.35
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCGAAGCCACCAGATA
Found at i:50091402 original size:19 final size:19
Alignment explanation
Indices: 50091378--50091428 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
50091368 GGGCCCGTTG
50091378 GCCCATTAGCCCGTTTTCA
1 GCCCATTAGCCCGTTTTCA
* *
50091397 GCCCATTGGCCCGTTTTCG
1 GCCCATTAGCCCGTTTTCA
50091416 GCCCATTAAGCCC
1 GCCCATT-AGCCC
50091429 AAAAATACCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.14, C:0.39, G:0.20, T:0.27
Consensus pattern (19 bp):
GCCCATTAGCCCGTTTTCA
Found at i:50091815 original size:27 final size:27
Alignment explanation
Indices: 50091784--50091875 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
50091774 GGGGCAAAAT
* * *
50091784 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
50091811 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
50091838 GGT-ATTTCTACCTTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
50091865 GGTAATTTTAC
1 GGTAATTTTAC
50091876 AACTTATCCA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.05
27 48 0.87
28 4 0.07
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:50099367 original size:63 final size:64
Alignment explanation
Indices: 50099287--50099466 Score: 197
Period size: 66 Copynumber: 2.8 Consensus size: 64
50099277 AGACATTATG
* *
50099287 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
50099350 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
50099415 AA
63 AA
* * *
50099417 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAG
50099467 GCCAACTATA
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 40 0.42
64 1 0.01
65 2 0.02
66 45 0.47
67 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:50106703 original size:19 final size:20
Alignment explanation
Indices: 50106679--50106725 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
50106669 GGGCCCGTTG
50106679 GCCCATTAGCCCG-TTTTCA
1 GCCCATTAGCCCGTTTTTCA
* *
50106698 GCCCATTGGCCCGTTTTTCG
1 GCCCATTAGCCCGTTTTTCA
50106718 GCCCATTA
1 GCCCATTA
50106726 AGCCGCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.13, C:0.36, G:0.19, T:0.32
Consensus pattern (20 bp):
GCCCATTAGCCCGTTTTTCA
Found at i:50107158 original size:25 final size:23
Alignment explanation
Indices: 50107107--50107174 Score: 82
Period size: 26 Copynumber: 2.7 Consensus size: 23
50107097 TTACCCCACA
50107107 AGGGTATTCAGGTAATTTACCTAC
1 AGGGTATTC-GGTAATTTACCTAC
*
50107131 AGGGTATTTCGGTATTTCTACCTAC
1 AGGGTA-TTCGGTAATT-TACCTAC
50107156 AGGGGTAATTCGGTAATTT
1 A-GGGT-ATTCGGTAATTT
50107175 TACAAACTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 12 0.32
25 12 0.32
26 13 0.34
27 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.37
Consensus pattern (23 bp):
AGGGTATTCGGTAATTTACCTAC
Found at i:50110493 original size:1 final size:1
Alignment explanation
Indices: 50110487--50110602 Score: 160
Period size: 1 Copynumber: 116.0 Consensus size: 1
50110477 TTCAAATCTC
* * * *
50110487 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTTATTTTTTTTTTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
50110552 TTTTATTATTTTTTTTTTTTATTTTTTTTTTTTTTTTCTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
50110603 GTACTTATTT
Statistics
Matches: 99, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 99 1.00
ACGTcount: A:0.04, C:0.01, G:0.02, T:0.93
Consensus pattern (1 bp):
T
Found at i:50121417 original size:71 final size:67
Alignment explanation
Indices: 50121340--50121477 Score: 177
Period size: 67 Copynumber: 2.0 Consensus size: 67
50121330 TCACCAGATA
* * * *
50121340 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCATCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
50121405 GGCTGC
62 GGCTGC
* * *
50121411 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGTAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
50121476 GC
66 GC
50121478 AGAACGCTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
67 35 0.58
71 25 0.42
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:50121459 original size:27 final size:26
Alignment explanation
Indices: 50121411--50121462 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50121401 GCGAGGCTGC
*
50121411 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
50121437 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
50121463 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50121757 original size:19 final size:19
Alignment explanation
Indices: 50121735--50121791 Score: 93
Period size: 19 Copynumber: 3.2 Consensus size: 19
50121725 TGGCCTATTA
50121735 GCCCGTTTTCGGCCCATTG
1 GCCCGTTTTCGGCCCATTG
50121754 GCCCGTTTTCGG-CCATTG
1 GCCCGTTTTCGGCCCATTG
50121772 G-CCG-TTTCGGCCCATTG
1 GCCCGTTTTCGGCCCATTG
50121789 GCC
1 GCC
50121792 TTTCGGCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.17
17 10 0.28
18 8 0.22
19 12 0.33
ACGTcount: A:0.05, C:0.37, G:0.28, T:0.30
Consensus pattern (19 bp):
GCCCGTTTTCGGCCCATTG
Found at i:50121781 original size:16 final size:17
Alignment explanation
Indices: 50121741--50121799 Score: 86
Period size: 16 Copynumber: 3.5 Consensus size: 17
50121731 ATTAGCCCGT
50121741 TTTCGGCCCATTGGCCCG
1 TTTCGGCCCATTGG-CCG
50121759 TTTTCGG-CCATTGGCCG
1 -TTTCGGCCCATTGGCCG
50121776 TTTCGGCCCATTGGCC-
1 TTTCGGCCCATTGGCCG
50121792 TTTCGGCC
1 TTTCGGCC
50121800 ATTAAGCCCA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.36
17 12 0.31
18 7 0.18
19 6 0.15
ACGTcount: A:0.05, C:0.36, G:0.27, T:0.32
Consensus pattern (17 bp):
TTTCGGCCCATTGGCCG
Found at i:50122223 original size:27 final size:27
Alignment explanation
Indices: 50122164--50122248 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
50122154 GGCAAAATGT
* * * *
50122164 TAATTTTACCC-ACAAGGGTATCTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
50122190 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
50122217 TATTTCTACCTTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
50122244 TAATT
1 TAATT
50122249 TTACAACTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:50129787 original size:68 final size:67
Alignment explanation
Indices: 50129715--50129862 Score: 167
Period size: 67 Copynumber: 2.2 Consensus size: 67
50129705 CATCATGTGT
* * * *
50129715 ACAAGAGAGCTACAAGACATTCTGATGTAGCTAGGTCGCATGGGT-GATAC-GATG-TGTACACC
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACC
50129777 ATGTAG
62 ATGTAG
* * * *
50129783 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACCATGT
50129848 AG
66 AG
50129850 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
50129863 GAGATAAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 5 0.07
66 4 0.06
67 27 0.39
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACCATGT
AG
Found at i:50133133 original size:27 final size:27
Alignment explanation
Indices: 50133079--50133169 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
50133069 TAGGCAAAAT
* ** *
50133079 GGTAATTTTACCC-ACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50133105 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50133132 GGTATTTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50133159 AGTAATTCTAC
1 GGTAATTCTAC
50133170 AACTTATCCA
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
26 11 0.21
27 42 0.79
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50136841 original size:93 final size:93
Alignment explanation
Indices: 50136729--50136900 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
50136719 CGCCCATAAG
*
50136729 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
50136793 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
50136822 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50136887 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50136901 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50136895 original size:46 final size:46
Alignment explanation
Indices: 50136722--50136897 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
50136712 TGTAACCCGC
* *
50136722 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
50136768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50136818 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50136861 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50136898 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50144370 original size:93 final size:93
Alignment explanation
Indices: 50144258--50144429 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
50144248 CGCCCATAAG
*
50144258 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
50144322 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
50144351 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50144416 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50144430 TCAACATCCT
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50144424 original size:46 final size:46
Alignment explanation
Indices: 50144251--50144426 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
50144241 TGTAACCCGC
* *
50144251 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
50144297 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50144347 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50144390 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50144427 TGCTCAACAT
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50145626 original size:19 final size:18
Alignment explanation
Indices: 50145583--50145626 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
50145573 CATAGAATTT
*
50145583 CATCACGAAATTTTCACA
1 CATCATGAAATTTTCACA
50145601 CATCATGAAATTTTCACA
1 CATCATGAAATTTTCACA
50145619 CAATCATG
1 C-ATCATG
50145627 CAATCATATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.30
Consensus pattern (18 bp):
CATCATGAAATTTTCACA
Found at i:50145942 original size:20 final size:20
Alignment explanation
Indices: 50145917--50145978 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
50145907 CATAAGTGAA
50145917 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
* *
50145937 CTCGGA-TGC--CT--AGGAA
1 CTCGGACT-CAACTCAACGAG
50145953 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
*
50145973 TTCGGA
1 CTCGGA
50145979 TCCAAATTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 12
0.65 0.10 0.25
Matches are distributed among these distances:
16 10 0.32
17 1 0.03
18 4 0.13
19 1 0.03
20 15 0.48
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (20 bp):
CTCGGACTCAACTCAACGAG
Found at i:50148386 original size:29 final size:29
Alignment explanation
Indices: 50148347--50148434 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
50148337 CAAAGATAAC
*
50148347 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
50148376 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
50148405 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
50148435 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Done.