Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 154 of 332
Found at i:50521196 original size:54 final size:52
Alignment explanation
Indices: 50521138--50521310 Score: 179
Period size: 54 Copynumber: 3.2 Consensus size: 52
50521128 GGGGTATTTT
* ** * *
50521138 GGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAACTAAGGGTA--AAAGTAATTCTGTAAATCAAGGGTAAAAC
* * *
50521192 GGTAATTCTGTAAATCGAA-GGTAAAACAGTAATTCTGTAAATTAAGGGTAAAAT
1 GGTAATTCTGTAAA-CTAAGGGT-AAA-AGTAATTCTGTAAATCAAGGGTAAAAC
* *
50521246 GGTAATTCTATAAATTAAGGGTAAAACGATAA-TCTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAACTAAGGGTAAAA-G-TAATTCTGTAAATCAAGGGTAAAAC
50521299 GGTAATTCTGTA
1 GGTAATTCTGTA
50521311 TATCGAGGGT
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
52 1 0.01
53 36 0.36
54 58 0.59
55 4 0.04
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (52 bp):
GGTAATTCTGTAAACTAAGGGTAAAAGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:50521224 original size:81 final size:80
Alignment explanation
Indices: 50521139--50521310 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 80
50521129 GGGTATTTTG
* *** * * * *
50521139 GTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAA-TCTGTA
50521204 AATCGAA-GGTAAAACA
65 AATC-AAGGGTAAAACA
* * *
50521220 GTAATTCTGTAAATTAAGGGTAAAATGGTAATTCTATAAATTAAGGGTAAAACGATAATCTGTAA
1 GTAATTCTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAATCTGTAA
*
50521285 ATCAAGGGTAAAACG
66 ATCAAGGGTAAAACA
50521300 GTAATTCTGTA
1 GTAATTCTGTA
50521311 TATCGAGGGT
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.03
80 29 0.37
81 47 0.60
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (80 bp):
GTAATTCTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAATCTGTAA
ATCAAGGGTAAAACA
Found at i:50521329 original size:80 final size:81
Alignment explanation
Indices: 50521139--50521341 Score: 223
Period size: 80 Copynumber: 2.5 Consensus size: 81
50521129 GGGTATTTTG
* * * * ** *
50521139 GTAATTTTGTAAA-CTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATC-AAGGGTAATTTGGTAATTTTATAAATTAAGGGTAAAACGATAATTCTGT
50521203 AAATCGAAGGTAAAACA
65 AAATCGAAGGTAAAACA
* ** *
50521220 GTAATTCTGTAAATTAAGGGTAAAATGGTAATTCTATAAATTAAGGGTAAAACGATAA-TCTGTA
1 GTAATTCTGTAAATCAAGGGTAATTTGGTAATTTTATAAATTAAGGGTAAAACGATAATTCTGTA
*
50521284 AATC-AAGGGTAAAACG
66 AATCGAA-GGTAAAACA
* * * *
50521300 GTAATTCTGTATATCGAGGGTACTTTGGTAATTTTACAAATT
1 GTAATTCTGTAAATCAAGGGTAATTTGGTAATTTTATAAATT
50521342 GAGGACATTT
Statistics
Matches: 100, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
79 2 0.02
80 52 0.52
81 46 0.46
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.33
Consensus pattern (81 bp):
GTAATTCTGTAAATCAAGGGTAATTTGGTAATTTTATAAATTAAGGGTAAAACGATAATTCTGTA
AATCGAAGGTAAAACA
Found at i:50523425 original size:31 final size:31
Alignment explanation
Indices: 50523384--50523466 Score: 118
Period size: 31 Copynumber: 2.7 Consensus size: 31
50523374 TCAGTCTCGA
50523384 CATA-TACTGGGTCGAAGCCTTTTCATAAAT
1 CATATTACTGGGTCGAAGCCTTTTCATAAAT
50523414 CATATTACTGGG-CTGAAGCCTTTTCATAAAT
1 CATATTACTGGGTC-GAAGCCTTTTCATAAAT
* *
50523445 CATATCACT-GATCGAAGCCTTT
1 CATATTACTGGGTCGAAGCCTTT
50523467 ACTGTAAACG
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
30 15 0.31
31 33 0.69
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (31 bp):
CATATTACTGGGTCGAAGCCTTTTCATAAAT
Found at i:50523714 original size:25 final size:25
Alignment explanation
Indices: 50523686--50523755 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
50523676 CTCTTTTAAT
*
50523686 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
50523711 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
50523736 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50523756 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:50524627 original size:27 final size:27
Alignment explanation
Indices: 50524566--50524629 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
50524556 GGCATATTCA
* *
50524566 TCATTTTACCGTACAAGGGTATTACGG
1 TCATTTTACCCTACAAGGCTATTACGG
*
50524593 TCACTTTACCCTACAAAGGCT-TTACGG
1 TCATTTTACCCTAC-AAGGCTATTACGG
*
50524620 TCTTTTTACC
1 TCATTTTACC
50524630 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGCTATTACGG
Found at i:50524713 original size:27 final size:26
Alignment explanation
Indices: 50524683--50524738 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
50524673 GTAAATCTAC
* *
50524683 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTCCAATAATTTT-T
*
50524710 AAACCAATGGTATTCCAATAATTTTT
1 AAACCAAAGGTATTCCAATAATTTTT
50524736 AAA
1 AAA
50524739 AAAGTCAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (26 bp):
AAACCAAAGGTATTCCAATAATTTTT
Found at i:50524887 original size:54 final size:54
Alignment explanation
Indices: 50524746--50524931 Score: 171
Period size: 54 Copynumber: 3.4 Consensus size: 54
50524736 AAAAAAGTCA
* * * * * *
50524746 AGGGTATTTTTGTAATTGTGTACATTAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAATAG
* * *
50524800 AGGGTATTTCGGTAATTTCT-CAAAC-CAGTGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTTGGTAATTT-TGTAAACTAAG-GGTATTTTGGTAATTTTACAAA-TAG
* ** *
50524855 -GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAATAG
****
50524908 AGGGTAAAACGGTAATTTTGTAAA
1 AGGGTATTTTGGTAATTTTGTAAA
50524932 TCGAGGGTAA
Statistics
Matches: 106, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
53 4 0.04
54 97 0.92
55 5 0.05
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAATAG
Found at i:50524899 original size:27 final size:27
Alignment explanation
Indices: 50524745--50524904 Score: 144
Period size: 27 Copynumber: 5.9 Consensus size: 27
50524735 TAAAAAAGTC
* * * *
50524745 AAGGGTATTTTTGTAATTGTGTACATT
1 AAGGGTATTTTGGTAATTTTGTAAACT
* ** *
50524772 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTGTAAACT
* * *
50524799 GAGGGTATTTCGGTAATTTCT-CAAAC-
1 AAGGGTATTTTGGTAATTT-TGTAAACT
* **
50524825 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTGTAAACT
*
50524853 AGGGGTATTTTGGTAATTTTGTAAACT
1 AAGGGTATTTTGGTAATTTTGTAAACT
*
50524880 AAGGGTATTTTAGTAATTTTGTAAA
1 AAGGGTATTTTGGTAATTTTGTAAA
50524905 TCGAGGGTAA
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.03
27 106 0.95
28 2 0.02
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTGTAAACT
Found at i:50524911 original size:27 final size:27
Alignment explanation
Indices: 50524746--50524967 Score: 139
Period size: 27 Copynumber: 8.2 Consensus size: 27
50524736 AAAAAAGTCA
* * * *
50524746 AGGGTATTTTTGTAATTGTGTACAT-T
1 AGGGTATTTTGGTAATTTTGTAAATCG
** *
50524772 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTGTAAATCG
* * *
50524800 AGGGTATTTCGGTAATTTCT-CAAA-CC
1 AGGGTATTTTGGTAATTT-TGTAAATCG
** *
50524826 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTGTAAATCG
*
50524853 AGGGGTATTTTGGTAATTTTGTAAA-CTA
1 A-GGGTATTTTGGTAATTTTGTAAATC-G
*
50524881 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
****
50524908 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
**** * *
50524935 AGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATCG
50524962 AGGGTA
1 AGGGTA
50524968 AAATGGTAAT
Statistics
Matches: 165, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.02
27 156 0.95
28 5 0.03
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAATCG
Found at i:50524939 original size:54 final size:54
Alignment explanation
Indices: 50524864--50525048 Score: 162
Period size: 54 Copynumber: 3.4 Consensus size: 54
50524854 GGGGTATTTT
* *
50524864 GGTAATTTTGTAAA-CTAAGGGTATTTTAG-TAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATC-AAGGGTA-TATAGATAATTCTGTAAATCGAGGGTAAAAC
* * * * *
50524918 GGTAATTTTGTAAATCGAGGGTA-AAACGGTAATTCTGTAAATTGAGGGTAAAAT
1 GGTAATTTTGTAAATCAAGGGTATATA-GATAATTCTGTAAATCGAGGGTAAAAC
* * * * * * * *
50524972 GGTAATTCTATAAATTAAAGGTA-AAACGACAATTCTATAAATCAAGGGTAAAAC
1 GGTAATTTTGTAAATCAAGGGTATATA-GATAATTCTGTAAATCGAGGGTAAAAC
*
50525026 GGTAATTTTGTAAATCGAGGGTA
1 GGTAATTTTGTAAATCAAGGGTA
50525049 CTTTGATAAT
Statistics
Matches: 106, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 103 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (54 bp):
GGTAATTTTGTAAATCAAGGGTATATAGATAATTCTGTAAATCGAGGGTAAAAC
Found at i:50524949 original size:81 final size:81
Alignment explanation
Indices: 50524864--50525039 Score: 199
Period size: 81 Copynumber: 2.2 Consensus size: 81
50524854 GGGGTATTTT
*** * * * * ** * *
50524864 GGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 GGTAATTTTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCAAAGGTAAAACGACAATTCTAT
*
50524929 AAATCGAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* * * * *
50524945 GGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATTAAAGGTAAAACGACAATTCTAT
1 GGTAATTTTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCAAAGGTAAAACGACAATTCTAT
50525010 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
50525026 GGTAATTTTGTAAA
1 GGTAATTTTGTAAA
50525040 TCGAGGGTAC
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (81 bp):
GGTAATTTTGTAAACTAAGGGTAAAATAGTAATTCTATAAATCAAAGGTAAAACGACAATTCTAT
AAATCAAGGGTAAAAC
Found at i:50524968 original size:27 final size:27
Alignment explanation
Indices: 50524892--50525048 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
50524882 GGGTATTTTA
*
50524892 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
50524919 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
50524946 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
50524973 GTAATTCTATAAATTAAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
** * *
50525000 ACAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
50525027 GTAATTTTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
50525049 CTTTGATAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:50525059 original size:81 final size:81
Alignment explanation
Indices: 50524910--50525068 Score: 201
Period size: 81 Copynumber: 2.0 Consensus size: 81
50524900 GTAAATCGAG
** * * * * *
50524910 GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGT
1 GGTAAAACGACAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGAT
*
50524975 AATTCTATAAATTAAA
66 AATTCTACAAATTAAA
* ***
50524991 GGTAAAACGACAATTCTATAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTACTTTGAT
1 GGTAAAACGACAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGAT
*
50525056 AATTTTACAAATT
66 AATTCTACAAATT
50525069 GAGGACATTT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.31
Consensus pattern (81 bp):
GGTAAAACGACAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGAT
AATTCTACAAATTAAA
Found at i:50525304 original size:28 final size:28
Alignment explanation
Indices: 50525272--50525336 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
50525262 TGGGCCTGTA
* * *
50525272 GGCCCATTGGGCTCACATGGCCCTTTCT
1 GGCCCATCGGGCCCACATGGCCCTTTCC
50525300 GGCCCATCGGGCCCACATGGCCCTTTCC
1 GGCCCATCGGGCCCACATGGCCCTTTCC
*
50525328 GGCCAATCG
1 GGCCCATCG
50525337 CGACCCGAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.12, C:0.40, G:0.26, T:0.22
Consensus pattern (28 bp):
GGCCCATCGGGCCCACATGGCCCTTTCC
Found at i:50529049 original size:43 final size:42
Alignment explanation
Indices: 50528916--50529075 Score: 157
Period size: 42 Copynumber: 3.8 Consensus size: 42
50528906 TGTGTTTTCG
* ** **
50528916 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATT-TG
1 TGTAAGACCACATCTGGGATGTTGGCATCGTA-TT-TGATTACA
* * * *
50528958 TGCAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTTCG
1 TGTAAGACCACATCTGGGATGTTGGCATCGTATTTGATTACA
50529000 TGTAAGACC-CTATCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGAT-GTTGGCATCG-TATTTGATTACA
*
50529043 TGTAAGACCACATCTGGGATGTTGGCATTGTAT
1 TGTAAGACCACATCTGGGATGTTGGCATCGTAT
50529076 GAGCTTTCCG
Statistics
Matches: 102, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
41 6 0.06
42 58 0.57
43 37 0.36
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGATGTTGGCATCGTATTTGATTACA
Found at i:50536655 original size:14 final size:15
Alignment explanation
Indices: 50536627--50536655 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50536617 CTCTTTTAAG
50536627 GACAAGAATAATCCA
1 GACAAGAATAATCCA
50536642 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
50536656 TATGAACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:50538019 original size:22 final size:22
Alignment explanation
Indices: 50537993--50538036 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
50537983 CATTAACTGC
50537993 GATGTTGCGAAAATTAAACAAT
1 GATGTTGCGAAAATTAAACAAT
50538015 GATGTTGCGAAAATTAAACAAT
1 GATGTTGCGAAAATTAAACAAT
50538037 CTTTTGATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (22 bp):
GATGTTGCGAAAATTAAACAAT
Found at i:50543441 original size:44 final size:43
Alignment explanation
Indices: 50543391--50543548 Score: 182
Period size: 42 Copynumber: 3.7 Consensus size: 43
50543381 TATGTGTTTT
50543391 CGTGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGACTT-TGATTTA
* * **
50543435 CGTGTAAAACCATGTCTGGGACATCAGCATCGTA-TTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ACTTTGATTTA
* *
50543477 CGTGTAAGACC-CTGTCTGGGACAAT-GCATCGACATTTG-GTTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAC-TTTGATTTA
*
50543519 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
50543549 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 8 0.08
42 45 0.47
43 11 0.11
44 30 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGACTTTGATTTA
Found at i:50548286 original size:43 final size:43
Alignment explanation
Indices: 50548127--50548290 Score: 151
Period size: 42 Copynumber: 3.8 Consensus size: 43
50548117 ACATAGGATT
*
50548127 TCGATATGTGA-TTCGTGTAAGACCACGTCTGGGA-TGTTGGCA
1 TCGATATGTGAGTTCGTGTAAGACCACGTCTGGGACAG-TGGCA
* * * ** *
50548169 TTGATTTGTGATTTACGTAAAAGACCATGTCTGGGACA-TCGGCA
1 TCGATATGTGAGTT-CGTGTAAGACCACGTCTGGGACAGT-GGCA
* *
50548213 TCG-TATATGAGTTCGTGTAAGACC-CTGTCTGGAACAGTGGCA
1 TCGATATGTGAGTTCGTGTAAGACCAC-GTCTGGGACAGTGGCA
*
50548255 TCGATATGTGA-TTACATGTAAGACCACGTCTGGGAC
1 TCGATATGTGAGTT-CGTGTAAGACCACGTCTGGGAC
50548291 GTTGGCGTTG
Statistics
Matches: 96, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
42 36 0.38
43 35 0.36
44 25 0.26
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGATATGTGAGTTCGTGTAAGACCACGTCTGGGACAGTGGCA
Found at i:50550286 original size:43 final size:41
Alignment explanation
Indices: 50550169--50550286 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 41
50550159 GATTTTTGTG
* * * *
50550169 GTTACAAGTAAGACCATGTCT-GAGACATCGACATCGTATTT
1 GTTACATGTAAGACCACGTCTAG-GACATCGGCATCGTATGT
* *
50550210 GTTTCGTGTAAGACC-CTGTCTAGGACAGT-GGCATCGATATGT
1 GTTACATGTAAGACCAC-GTCTAGGACA-TCGGCATCG-TATGT
50550252 GATTACATGTAAGACCACGTCTAGGACATCGGCAT
1 G-TTACATGTAAGACCACGTCTAGGACATCGGCAT
50550287 TGTACGATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
41 26 0.42
42 8 0.13
43 27 0.44
44 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (41 bp):
GTTACATGTAAGACCACGTCTAGGACATCGGCATCGTATGT
Found at i:50553410 original size:19 final size:20
Alignment explanation
Indices: 50553388--50553425 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
50553378 TCTTCTCCTC
*
50553388 TCTTCTTCTATT-TTCTTTT
1 TCTTCATCTATTCTTCTTTT
*
50553407 TCTTCATCTTTTCTTCTTT
1 TCTTCATCTATTCTTCTTT
50553426 AGCCGAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (20 bp):
TCTTCATCTATTCTTCTTTT
Found at i:50554913 original size:20 final size:20
Alignment explanation
Indices: 50554870--50554913 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
50554860 ACTGTTTTGT
50554870 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
50554890 -ATGGGCTCAACTGTGTT-AA
1 TATGGGC-CAACTGTATTGAA
50554909 TATGG
1 TATGG
50554914 TCAAGGCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:50561663 original size:19 final size:19
Alignment explanation
Indices: 50561627--50561665 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
50561617 TTTTCATCAT
* *
50561627 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
50561646 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
50561665 A
1 A
50561666 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:50562181 original size:27 final size:27
Alignment explanation
Indices: 50562129--50562218 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
50562119 GTGATAGAGT
50562129 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
50562158 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
50562185 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
50562213 CACCAG
1 CACCAG
50562219 GATGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:50562371 original size:28 final size:28
Alignment explanation
Indices: 50562324--50562388 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
50562314 AAATTTACCC
*
50562324 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
50562352 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
50562380 TAGGGGTAT
1 TAGGGGTAT
50562389 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:50570077 original size:27 final size:27
Alignment explanation
Indices: 50570026--50570105 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
50570016 ATGACAGAGT
* *
50570026 CACCAGATACATATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
50570055 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
50570082 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
50570106 TAACCACCAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 24 0.52
28 15 0.33
29 7 0.15
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:50570112 original size:28 final size:27
Alignment explanation
Indices: 50570026--50570115 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
50570016 ATGACAGAGT
* *
50570026 CACCAGATACATATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
50570055 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
50570082 CACCAGAACAGATAATTTGTGGCATAAC
1 CACCAGAACAGATAATTTGTGGCAT-GC
50570110 CACCAG
1 CACCAG
50570116 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 24 0.46
28 21 0.40
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:50570268 original size:28 final size:28
Alignment explanation
Indices: 50570221--50570285 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
50570211 AAATTAACCC
*
50570221 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
50570249 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
50570277 TAGGGGTAT
1 TAGGGGTAT
50570286 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:50576143 original size:43 final size:42
Alignment explanation
Indices: 50576026--50576183 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
50576016 TTTTTGTCTG
* * *
50576026 AGACCACGTCTGGAACGTTGGCATCG-ACTTATGATTTACGTGTA
1 AGACCACGTCTGGGATGTTGGCATCGTA-TT-TGA-TTACATGTA
* * ** * * *
50576070 AGACCATGTCTAGGACATCGACATCGTATTTGATTTCATGTA
1 AGACCACGTCTGGGATGTTGGCATCGTATTTGATTACATGTA
*
50576112 AGACC-CTGTCTGGGATAG-TGGCATCGATATTTGGTTACATGTA
1 AGACCAC-GTCTGGGAT-GTTGGCATCG-TATTTGATTACATGTA
*
50576155 AGACCACGTCTGGGATGTTGGCATTGTAT
1 AGACCACGTCTGGGATGTTGGCATCGTAT
50576184 AAGCTTTTCG
Statistics
Matches: 91, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 29 0.32
43 38 0.42
44 23 0.25
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
AGACCACGTCTGGGATGTTGGCATCGTATTTGATTACATGTA
Found at i:50580029 original size:29 final size:29
Alignment explanation
Indices: 50579984--50580219 Score: 242
Period size: 29 Copynumber: 8.1 Consensus size: 29
50579974 TATCAACTAG
*
50579984 CATCGATTAATGAAAAGGGATGGTGACGAC
1 CATCGAAT-ATGAAAAGGGATGGTGACGAC
*
50580014 CATCGAATAAGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* **
50580043 CATCGAATATGAAAAAGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* * *
50580072 CATCGAACATGAAAAGGGATAGTGATGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
*
50580101 CATCGAAT-TGAAAAGGGATGGTGACAAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* * **
50580129 AATCTAATATGAAAAGGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* * **
50580158 CATTGAATATGAAAAAGGAT-GTTTCGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* * * **
50580186 CATCGATTAAAGAAAAGGGACGGTTTCGAC
1 CATCGAAT-ATGAAAAGGGATGGTGACGAC
50580216 CATC
1 CATC
50580220 ATTTAGCACA
Statistics
Matches: 173, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
28 37 0.21
29 117 0.68
30 19 0.11
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTGACGAC
Found at i:50580140 original size:86 final size:87
Alignment explanation
Indices: 50579993--50580205 Score: 286
Period size: 86 Copynumber: 2.5 Consensus size: 87
50579983 GCATCGATTA
* * *
50579993 ATGAAAAGGGATGGTGACGACCATCGAATAAGAAAAGGGATGGTGACGACCATCGAATATGAAAA
1 ATGAAAAGGGATAGTGACGACCATCGAATAAGAAAAGGGATGGTGACAACAATCGAATATGAAAA
50580058 AGGATGGTTTCGACCATCGAAC
66 AGGATGGTTTCGACCATCGAAC
* * *
50580080 ATGAAAAGGGATAGTGATGACCATCGAAT-TGAAAAGGGATGGTGACAACAATCTAATATGAAAA
1 ATGAAAAGGGATAGTGACGACCATCGAATAAGAAAAGGGATGGTGACAACAATCGAATATGAAAA
* * *
50580144 GGGATGGTTTCGACCATTGAAT
66 AGGATGGTTTCGACCATCGAAC
* ** *
50580166 ATGAAAAAGGAT-GTTTCGACCATCGATTAAAGAAAAGGGA
1 ATGAAAAGGGATAGTGACGACCATCGAAT-AAGAAAAGGGA
50580206 CGGTTTCGAC
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
85 12 0.11
86 61 0.56
87 36 0.33
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.20
Consensus pattern (87 bp):
ATGAAAAGGGATAGTGACGACCATCGAATAAGAAAAGGGATGGTGACAACAATCGAATATGAAAA
AGGATGGTTTCGACCATCGAAC
Found at i:50580201 original size:115 final size:115
Alignment explanation
Indices: 50579994--50580205 Score: 320
Period size: 115 Copynumber: 1.8 Consensus size: 115
50579984 CATCGATTAA
* *
50579994 TGAAAAGGGATGGTGACGACCATCGAATAAGAAAAGGGATGGTGACGACCATCGAATATGAAAAA
1 TGAAAAGGGATGGTGACAACAATCGAATAAGAAAAGGGATGGTGACGACCATCGAATATGAAAAA
*
50580059 GGATGGTTTCGACCATCGAACATGAAAAGGGATAGTGATGACCATCGAAT
66 GGATGGTTTCGACCATCGAACAAGAAAAGGGATAGTGATGACCATCGAAT
* * ** *
50580109 TGAAAAGGGATGGTGACAACAATCTAATATGAAAAGGGATGGTTTCGACCATTGAATATGAAAAA
1 TGAAAAGGGATGGTGACAACAATCGAATAAGAAAAGGGATGGTGACGACCATCGAATATGAAAAA
50580174 GGAT-GTTTCGACCATCGATTA-AAGAAAAGGGA
66 GGATGGTTTCGACCATCGA--ACAAGAAAAGGGA
50580206 CGGTTTCGAC
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
114 14 0.16
115 72 0.83
116 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.20
Consensus pattern (115 bp):
TGAAAAGGGATGGTGACAACAATCGAATAAGAAAAGGGATGGTGACGACCATCGAATATGAAAAA
GGATGGTTTCGACCATCGAACAAGAAAAGGGATAGTGATGACCATCGAAT
Found at i:50581737 original size:22 final size:22
Alignment explanation
Indices: 50581712--50581795 Score: 76
Period size: 22 Copynumber: 4.1 Consensus size: 22
50581702 TATAAGATTA
50581712 AATTGATGTATGATTTGTGACC
1 AATTGATGTATGATTTGTGACC
50581734 AATTG-TG-AT-ATGTT-T-A--
1 AATTGATGTATGAT-TTGTGACC
*
50581750 AATTGATGTATGATTTATG-CC
1 AATTGATGTATGATTTGTGACC
*
50581771 AAATTGATGTGTGATTTGTGACC
1 -AATTGATGTATGATTTGTGACC
50581794 AA
1 AA
50581796 ATGTGCACAA
Statistics
Matches: 50, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
16 5 0.10
17 2 0.04
18 5 0.10
19 6 0.12
20 4 0.08
21 2 0.04
22 24 0.48
23 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (22 bp):
AATTGATGTATGATTTGTGACC
Found at i:50583233 original size:48 final size:48
Alignment explanation
Indices: 50583117--50583288 Score: 203
Period size: 48 Copynumber: 3.7 Consensus size: 48
50583107 ATGTGTAACC
* * *
50583117 GTGTAAGACCATATCTGGGATATGGCATCGGCAT-GTGAT-C---CC-
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGCGAGCCA
* *
50583159 GTATAAGACCATGTCTGGGACATGGCATCGGTATCGTTATGCGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGCGAGCCA
* * * * *
50583207 GTGTAAGACCATGTCTGGAACATGGCACCGGCATTGTTATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGCGAGCCA
*
50583255 GTGTAAGACCATGTTTGGGACATGGCATCGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
50583289 GAGGCATCGT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
42 30 0.28
43 4 0.04
44 1 0.01
47 2 0.02
48 72 0.66
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGCGAGCCA
Found at i:50583302 original size:42 final size:43
Alignment explanation
Indices: 50583116--50583368 Score: 146
Period size: 48 Copynumber: 5.7 Consensus size: 43
50583106 TATGTGTAAC
* *
50583116 CGTGTAAGACCATATCTGGGATATGGCATCGGCATGT--GA-T
1 CGTGTAAGACCATGTCTGGGACATGGCATCGGCATGTAGGAGT
* * *
50583156 CCCGTATAAGACCATGTCTGGGACATGGCATCGGTATCGTTATGCGAGC
1 --CGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-G-TA-G-GAGT
* *
50583205 CAGTGTAAGACCATGTCTGGAACATGGCACCGGCATTGTTATGTGAGCT
1 C-GTGTAAGACCATGTCTGGGACATGGCATCGGCA-TG-TA-G-GAG-T
* *
50583254 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATG-AGGCA-T
1 CGTGTAAGACCATGTCTGGGACATGGCATCGGCATGTAGG-AGT
* ** *
50583296 CGTGTAAGAGCATAG-CTGGG-CTATTGGCATCGATATG-A-GATTT
1 CGTGTAAGACCAT-GTCTGGGAC-A-TGGCATCGGCATGTAGGA-GT
* *
50583339 CCATGTAAGACCATGTCTGAGACATGGCAT
1 -CGTGTAAGACCATGTCTGGGACATGGCAT
50583369 TGTTACGGTA
Statistics
Matches: 169, Mismatches: 23, Indels: 37
0.74 0.10 0.16
Matches are distributed among these distances:
41 2 0.01
42 49 0.29
43 23 0.14
44 19 0.11
45 2 0.01
47 3 0.02
48 70 0.41
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCGGCATGTAGGAGT
Found at i:50586799 original size:12 final size:12
Alignment explanation
Indices: 50586782--50586809 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
50586772 AGCTTATAGA
50586782 CAAATTTTATGT
1 CAAATTTTATGT
50586794 CAAATTTTATGT
1 CAAATTTTATGT
50586806 CAAA
1 CAAA
50586810 AATAAACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (12 bp):
CAAATTTTATGT
Found at i:50588148 original size:45 final size:44
Alignment explanation
Indices: 50588062--50588223 Score: 141
Period size: 45 Copynumber: 3.7 Consensus size: 44
50588052 CTACTATCCT
* * *
50588062 AGACAGGGTCTTACACGAATCA-A-ATAT-GATACCGATGTCCC
1 AGACATGGTCTTACACGAAACACATATATCGATACCAATGTCCC
* *
50588103 AGACATGGTCTTACACGTAACCACATATATCGATACCAACGTCCC
1 AGACATGGTCTTACACG-AAACACATATATCGATACCAATGTCCC
** * * *
50588148 AGATGTGGTCTTACTCAAAAACACATATATCGATGCCAATGTCCC
1 AGACATGGTCTTACAC-GAAACACATATATCGATACCAATGTCCC
* ** * *
50588193 AAATGTGGTCTTACTCAAAAACACATATATC
1 AGACATGGTCTTACAC-GAAACACATATATC
50588224 ATAATCCTAC
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 16 0.15
42 4 0.04
43 1 0.01
44 4 0.04
45 79 0.76
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (44 bp):
AGACATGGTCTTACACGAAACACATATATCGATACCAATGTCCC
Found at i:50589320 original size:14 final size:15
Alignment explanation
Indices: 50589303--50589331 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50589293 GCACGAAAAT
50589303 TTCACACAT-ATAAA
1 TTCACACATAATAAA
50589317 TTCACACATAATAAA
1 TTCACACATAATAAA
50589332 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:50592887 original size:22 final size:22
Alignment explanation
Indices: 50592862--50592904 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
50592852 GCTTAATCGA
50592862 TATCATGTATTATTTCGTATGT
1 TATCATGTATTATTTCGTATGT
50592884 TATCATGTATTATTTCGTATG
1 TATCATGTATTATTTCGTATG
50592905 CTTAATCGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (22 bp):
TATCATGTATTATTTCGTATGT
Found at i:50593221 original size:48 final size:48
Alignment explanation
Indices: 50593096--50593222 Score: 191
Period size: 48 Copynumber: 2.6 Consensus size: 48
50593086 TGATCCCGTC
* * **
50593096 TAAGACCATGTCTGGGACATGGCATCAACATCGTTATGTGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCAACGGCATCGTTATGTGAGCCAGTG
* * *
50593144 TAAGACCATGTTTGGGACATGGCACCGGCATTGTTATGTGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCAACGGCATCGTTATGTGAGCCAGTG
50593192 TAAGACCATGTTTGGGACATGGCAACGGCAT
1 TAAGACCATGTTTGGGACATGGCAACGGCAT
50593223 AAGGCATCGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTTTGGGACATGGCAACGGCATCGTTATGTGAGCCAGTG
Found at i:50602709 original size:29 final size:29
Alignment explanation
Indices: 50602646--50602753 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
50602636 TTCACATACC
* * * *
50602646 TGTATCTGGCCCATTAAG-CCTAATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
50602674 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
* *
50602703 TGTATATGGCCGATTAGACCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
50602732 TTTATATGGCTCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
50602754 GTCACATTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.02
28 14 0.22
29 49 0.75
30 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:50602747 original size:58 final size:57
Alignment explanation
Indices: 50602643--50602753 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
50602633 AAATTCACAT
* * * *
50602643 ACCTGTATCTGGCCCATTAAGCCTAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAACCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
50602700 ACCTGTATATGGCCGATTAGACCCAAATCACATTTATATGGCTCATTAGGCCCA
1 ACCTGTATATGGCCCATTA-ACCCAAATCACATTCATATGGCCCATTAGGCCCA
50602754 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 17 0.37
58 29 0.63
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAACCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:50607372 original size:29 final size:29
Alignment explanation
Indices: 50607276--50607390 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
50607266 TACCTATATC
* * * *
50607276 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
* * *
50607304 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
50607333 TGGCCGATTAGGCCCAAATCACATTTATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
* * * *
50607362 TGGCTGGTTAGGCCC-AGTCACATTCATA
1 TGGCCGATTAGGCCCAAATCACATTTATA
50607390 T
1 T
50607391 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 26 0.35
29 48 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (29 bp):
TGGCCGATTAGGCCCAAATCACATTTATA
Found at i:50607645 original size:17 final size:16
Alignment explanation
Indices: 50607600--50607647 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
50607590 GTAGCCAAAC
* * *
50607600 TTTCAGCTTTTCTGCA
1 TTTCGGCTTTTCGGTA
50607616 TTTCGGCTTTTCGGTA
1 TTTCGGCTTTTCGGTA
50607632 TTTCGGCATTTTCGGT
1 TTTCGGC-TTTTCGGT
50607648 TTTGCCGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.08, C:0.21, G:0.21, T:0.50
Consensus pattern (16 bp):
TTTCGGCTTTTCGGTA
Found at i:50608914 original size:46 final size:47
Alignment explanation
Indices: 50608847--50609021 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 47
50608837 TGTACCCCGA
* *
50608847 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGAATTTGAC-T
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGAATTTGACAT
* * *
50608893 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG--G--AATTTGACAT
* * * * *
50608943 -C-TCA-CGAACTCAGACTCAACTCAACAAGCTC-AGACATTCG-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGA-ATTTGACAT
50608986 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG
50609022 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.58
47 24 0.23
48 3 0.03
49 3 0.03
50 4 0.04
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGAATTTGACAT
Found at i:50615711 original size:94 final size:94
Alignment explanation
Indices: 50615602--50615774 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
50615592 GCCCATAAGC
* * * *
50615602 AAACTCAGACTCAACTCAACGAGCTTGGGCGTTCGTATCCATAAGTGAACTCAGACTAAACTCAA
1 AAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTAAACTCAA
50615667 CGAGCTCGAATGCCTAGTTACATCTCACG
66 CGAGCTCGAATGCCTAGTTACATCTCACG
** * * *
50615696 AAACTCAGACTCAACTCATTGAGCTCGGACATTCGCATCCATCAGTGAACTTAGACTCAACTCAA
1 AAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTAAACTCAA
*
50615761 CGAGCTCGGATGCC
66 CGAGCTCGAATGCC
50615775 CAAATATCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 69 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (94 bp):
AAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTAAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCACG
Found at i:50615766 original size:46 final size:46
Alignment explanation
Indices: 50615603--50615770 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 46
50615593 CCCATAAGCA
* * * * *
50615603 AACTCAGACTCAACTCAACGAGCTTGGGCGTTCGTATCCATAAGTG
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGTG
* * * *
50615649 AACTCAGACTAAACTCAACGAGCTC-GA-ATGC-CTAGTTACATCTCACG-A
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGC-A--TCCA--TCA-GTG
**
50615697 AACTCAGACTCAACTCATTGAGCTCGGACATTCGCATCCATCAGTG
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGTG
*
50615743 AACTTAGACTCAACTCAACGAGCTCGGA
1 AACTCAGACTCAACTCAACGAGCTCGGA
50615771 TGCCCAAATA
Statistics
Matches: 94, Mismatches: 18, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 54 0.57
48 27 0.29
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGTG
Found at i:50621283 original size:15 final size:15
Alignment explanation
Indices: 50621263--50621292 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50621253 AGTCTCTGCT
*
50621263 TAGGAACCGAGTTAA
1 TAGGAACCAAGTTAA
50621278 TAGGAACCAAGTTAA
1 TAGGAACCAAGTTAA
50621293 GTATTCAACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.20
Consensus pattern (15 bp):
TAGGAACCAAGTTAA
Found at i:50625710 original size:22 final size:22
Alignment explanation
Indices: 50625682--50625723 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
50625672 AGGGCAATGA
50625682 GAAACCCCCTTTTCCCTCCCGG
1 GAAACCCCCTTTTCCCTCCCGG
50625704 GAAACCCCCTTTTCCCTCCC
1 GAAACCCCCTTTTCCCTCCC
50625724 TTTTGGCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.52, G:0.10, T:0.24
Consensus pattern (22 bp):
GAAACCCCCTTTTCCCTCCCGG
Found at i:50626920 original size:32 final size:29
Alignment explanation
Indices: 50626879--50626957 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 29
50626869 TTCTAATTTT
50626879 TTTGAAAATTTTAATTAAGCTCACTTAAAATA
1 TTTGAAAATTTTAATTAAGCTCAC--AAAA-A
* * *
50626911 TTTGAAAATTCTCATTAATCTCACAAAAA
1 TTTGAAAATTTTAATTAAGCTCACAAAAA
*
50626940 TTTTAAAATTTTTAATTA
1 TTTGAAAA-TTTTAATTA
50626958 GACCCCACTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 8 0.20
30 11 0.28
32 21 0.52
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (29 bp):
TTTGAAAATTTTAATTAAGCTCACAAAAA
Found at i:50638371 original size:8 final size:8
Alignment explanation
Indices: 50638358--50638383 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50638348 TATTCCTGCC
50638358 TCCTTTCT
1 TCCTTTCT
50638366 TCCTTTCT
1 TCCTTTCT
50638374 TCCTTTCT
1 TCCTTTCT
50638382 TC
1 TC
50638384 TTCAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (8 bp):
TCCTTTCT
Found at i:50641887 original size:27 final size:27
Alignment explanation
Indices: 50641857--50641908 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
50641847 AAAAGTGATC
* *
50641857 AAAAAAGTGAAAAA-TAGAAAAATATG
1 AAAAAAATGAAAAATTAAAAAAATATG
*
50641883 AAAAAAATTAAAAATTAAAAAAATAT
1 AAAAAAATGAAAAATTAAAAAAATAT
50641909 TTTGTGGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (27 bp):
AAAAAAATGAAAAATTAAAAAAATATG
Found at i:50642655 original size:18 final size:18
Alignment explanation
Indices: 50642632--50642673 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
50642622 TTGTTAATAA
50642632 TATT-TTTTA-TTT-TAT
1 TATTATTTTATTTTCTAT
50642647 TATTATTTTATTTTCTAT
1 TATTATTTTATTTTCTAT
*
50642665 TATTGTTTT
1 TATTATTTT
50642674 CAAAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 5 0.22
17 3 0.13
18 11 0.48
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.76
Consensus pattern (18 bp):
TATTATTTTATTTTCTAT
Found at i:50642665 original size:15 final size:16
Alignment explanation
Indices: 50642632--50642668 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
50642622 TTGTTAATAA
*
50642632 TATT-TTTTATTTTAT
1 TATTATTTTATTTTAC
50642647 TATTATTTTATTTT-C
1 TATTATTTTATTTTAC
50642662 TATTATT
1 TATTATT
50642669 GTTTTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (16 bp):
TATTATTTTATTTTAC
Found at i:50643345 original size:32 final size:32
Alignment explanation
Indices: 50643304--50643365 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
50643294 CATACGGTCT
*
50643304 AGGCCAATTC-GAGCATGTGGGCCACACGGGTA
1 AGGCCAATTCAG-GCATGTGAGCCACACGGGTA
*
50643336 AGGCCAATTCAGGCGTGTGAGCCACACGGG
1 AGGCCAATTCAGGCATGTGAGCCACACGGG
50643366 CAAGCCACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (32 bp):
AGGCCAATTCAGGCATGTGAGCCACACGGGTA
Found at i:50644149 original size:19 final size:19
Alignment explanation
Indices: 50644125--50644162 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
50644115 TCCAAAATTT
*
50644125 TGGATTTCTTTTGGTTTTG
1 TGGATTACTTTTGGTTTTG
*
50644144 TGGATTAGTTTTGGTTTTG
1 TGGATTACTTTTGGTTTTG
50644163 ATTATGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.03, G:0.29, T:0.61
Consensus pattern (19 bp):
TGGATTACTTTTGGTTTTG
Found at i:50644718 original size:20 final size:20
Alignment explanation
Indices: 50644681--50644720 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50644671 AGAAACTGAG
*
50644681 ACTTCTGAAAGATTTTTGAA
1 ACTTCTGAAAGATATTTGAA
50644701 ACTTCTGATAA-ATATTTGAA
1 ACTTCTGA-AAGATATTTGAA
50644721 GCATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (20 bp):
ACTTCTGAAAGATATTTGAA
Found at i:50652633 original size:18 final size:17
Alignment explanation
Indices: 50652606--50652639 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50652596 AAAAAATTTC
50652606 TTTTTATTATTATTTTA
1 TTTTTATTATTATTTTA
*
50652623 TTTTCTATTATTGTTTT
1 TTTT-TATTATTATTTT
50652640 CAAAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTATTATTATTTTA
Found at i:50654669 original size:49 final size:48
Alignment explanation
Indices: 50654608--50654789 Score: 154
Period size: 48 Copynumber: 3.8 Consensus size: 48
50654598 CCCGTGTAGA
* *
50654608 ACCATGTTTGGGACATGGCGTTGG-CATCCGAGATGAGAGCCACTGTAAG
1 ACCATGTTTGGGACATGGCATCGGTCAT--GAGATGAGAGCCACTGTAAG
* * * * * *
50654657 ACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCAGTGTAAG
1 ACCATGTTTGGGACATGGCATCGGTCATGAGATGAGAGCCACTGTAAG
* * * * * * *
50654705 ACCATGTTTGGGACATGGCATC-GACGATGATATGTGTGCTAGTATAAG
1 ACCATGTTTGGGACATGGCATCGGTC-ATGAGATGAGAGCCACTGTAAG
* *
50654753 ACCATGTCTGGGACATGGCATCGG-CACTGACATGAGA
1 ACCATGTTTGGGACATGGCATCGGTCA-TGAGATGAGA
50654790 CCTTGTGTAA
Statistics
Matches: 112, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
47 2 0.02
48 86 0.77
49 22 0.20
50 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (48 bp):
ACCATGTTTGGGACATGGCATCGGTCATGAGATGAGAGCCACTGTAAG
Found at i:50654717 original size:48 final size:48
Alignment explanation
Indices: 50654646--50654777 Score: 210
Period size: 48 Copynumber: 2.8 Consensus size: 48
50654636 CGAGATGAGA
* *
50654646 GCCACTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGT
* *
50654694 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGATGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGT
* *
50654742 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
50654778 ACTGACATGA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGT
Found at i:50654801 original size:48 final size:47
Alignment explanation
Indices: 50654651--50654804 Score: 175
Period size: 48 Copynumber: 3.2 Consensus size: 47
50654641 TGAGAGCCAC
* *
50654651 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCC-AG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATGATATGTG-ACCTAG
* * **
50654699 TGTAAGACCATGTTTGGGACATGGCATCGACGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATGATATGTGACCTAG
* * * *
50654747 TATAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAGACCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA-TGATATGTGACCTAG
50654795 TGTAAGACCA
1 TGTAAGACCA
50654805 CATCTAGGAT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
47 2 0.02
48 87 0.98
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATGATATGTGACCTAG
Found at i:50656038 original size:51 final size:51
Alignment explanation
Indices: 50655962--50656064 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
50655952 TATCAAAATT
50655962 TCAAGTTGGGGTATTAATAAACCTTAAGTGTTTTGAAGTGAGTGGCATGTA
1 TCAAGTTGGGGTATTAATAAACCTTAAGTGTTTTGAAGTGAGTGGCATGTA
50656013 TCAAGTTGGGGTATTAATAAACCTTAAGTGTTTTGAAGTGAGTGGCATGTA
1 TCAAGTTGGGGTATTAATAAACCTTAAGTGTTTTGAAGTGAGTGGCATGTA
50656064 T
1 T
50656065 AGAGACTTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.36
Consensus pattern (51 bp):
TCAAGTTGGGGTATTAATAAACCTTAAGTGTTTTGAAGTGAGTGGCATGTA
Found at i:50657570 original size:22 final size:21
Alignment explanation
Indices: 50657540--50657583 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
50657530 TGAGGTGTCC
50657540 TATGGTGAAATTTCATGAGAAT
1 TATGGTGAAATTTCATGA-AAT
*
50657562 TATGTTGAAATTTCATGAAAT
1 TATGGTGAAATTTCATGAAAT
50657583 T
1 T
50657584 TCAGTGGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (21 bp):
TATGGTGAAATTTCATGAAAT
Found at i:50659948 original size:45 final size:45
Alignment explanation
Indices: 50659838--50660059 Score: 288
Period size: 45 Copynumber: 5.0 Consensus size: 45
50659828 CCGAATTCAT
* * * ** *
50659838 TCACCGGCATT-TTGCATGCTAGGCTCGAA-ACCCG-ATACCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
* *
50659880 TCATCGGCATTATAACCTGCTAGGCTCGAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
* * *
50659925 TCACCGGTATTATAGCTTGCTAGGCTCGAAGGCCTGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
*
50659970 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGG-CCCGAATAGTATA
* *
50660016 TCACCGGCATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTAT
50660060 TGTACGATAT
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
42 10 0.06
43 15 0.09
44 4 0.03
45 86 0.54
46 43 0.27
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATA
Found at i:50660039 original size:91 final size:90
Alignment explanation
Indices: 50659838--50660059 Score: 283
Period size: 91 Copynumber: 2.5 Consensus size: 90
50659828 CCGAATTCAT
* * ** * *
50659838 TCACCGGCATT-TTGCATGCTAGGCTCGAAA--CCCG-ATACCATTTCATCGGCATTATAACCTG
1 TCACCGGCATTATAGCTTGCTAGGCTC-AAAGGCCCGAATAGTATATCACCGGCATTATAACCTG
*
50659899 CTAGGCTCGAAGGCCCGAATAGTATA
65 CTAGGCTCAAAGGCCCGAATAGTATA
* * * *
50659925 TCACCGGTATTATAGCTTGCTAGGCTCGAAGGCCTGAATAGTATATCACCGGCATTATAGCCTGC
1 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAACCTGC
50659990 TAGGCTCAAAGGCCCCGAATAGTATA
66 TAGGCTCAAAGG-CCCGAATAGTATA
50660016 TCACCGGCATTATAGCCTT-CTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTATAG-CTTGCTAGGCTCAAAGGCCCGAATAGTAT
50660060 TGTACGATAT
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
87 12 0.10
88 13 0.11
89 3 0.03
90 34 0.30
91 50 0.43
92 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (90 bp):
TCACCGGCATTATAGCTTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAACCTGC
TAGGCTCAAAGGCCCGAATAGTATA
Found at i:50660167 original size:43 final size:43
Alignment explanation
Indices: 50660119--50660207 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 43
50660109 TAGGTACAAA
*
50660119 CATCATTCGAATATATCATCCTACATTTTGTTCACTTTTATTT
1 CATCATTCGAATATATCATCCTACATTTTATTCACTTTTATTT
* *
50660162 CATCATTCGGATATTTCATCCTACATTTTATTCACTTTTATTT
1 CATCATTCGAATATATCATCCTACATTTTATTCACTTTTATTT
50660205 CAT
1 CAT
50660208 TTCATCACTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.25, C:0.21, G:0.04, T:0.49
Consensus pattern (43 bp):
CATCATTCGAATATATCATCCTACATTTTATTCACTTTTATTT
Found at i:50660931 original size:47 final size:47
Alignment explanation
Indices: 50660880--50661071 Score: 312
Period size: 47 Copynumber: 4.1 Consensus size: 47
50660870 AAAATTTTCT
* ** * *
50660880 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAATTTTAACAAAC
1 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
* **
50660927 TTAACTAAGTAATTTATTTGGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
50660974 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
50661021 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
50661068 TTAA
1 TTAA
50661072 ATCCAACTTA
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAATTATTAAGAACAAATTTAACAAGC
Found at i:50667861 original size:45 final size:45
Alignment explanation
Indices: 50667784--50667942 Score: 216
Period size: 45 Copynumber: 3.6 Consensus size: 45
50667774 GCATTTCGCA
* *
50667784 TGCTAGGCTCGAA-GCCC-AATA-TCATTTCACCGGCATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGT-ATATCACCGGCATTATAGCC
* ** * *
50667827 TACTAGGCTTGAAGGCCTGAATAGTATGTCACCGGCATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
*
50667872 TGCTAGGCTCAAAGGCCCGAATAGTATATCACTGGCATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
50667917 TGCTAGGCTCAAAGGCCCGAATAGTA
1 TGCTAGGCTCAAAGGCCCGAATAGTA
50667943 CTGTACGATA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 11 0.11
44 3 0.03
45 88 0.85
46 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (45 bp):
TGCTAGGCTCAAAGGCCCGAATAGTATATCACCGGCATTATAGCC
Found at i:50670800 original size:3 final size:3
Alignment explanation
Indices: 50670792--50670820 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
50670782 AGTTCGTGTG
50670792 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
50670821 GAAATGTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:50671475 original size:48 final size:48
Alignment explanation
Indices: 50671250--50671475 Score: 274
Period size: 48 Copynumber: 4.7 Consensus size: 48
50671240 ATGAGATCCC
* * * * * * * *
50671250 GTGTAAGACCATGTTTGGGACATGGCGTTGGCATCTGAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-ATGATATGTGTGCTA
* * *
50671299 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
* * *
50671347 GTGTAAGACCATGTCTGGGAGATGGAATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
*
50671395 GTGTAAGACCATGTCTGGTACATGGCATCGGCAATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
* *
50671443 GTATATGACCATG-CTTGGGACATGGCATCGGCA
1 GTGTAAGACCATGTC-TGGGACATGGCATCGGCA
50671476 CTGACATGAG
Statistics
Matches: 158, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 127 0.80
49 30 0.19
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
Found at i:50671495 original size:96 final size:95
Alignment explanation
Indices: 50671253--50671501 Score: 277
Period size: 96 Copynumber: 2.6 Consensus size: 95
50671243 AGATCCCGTG
* * * *
50671253 TAAGACCATGTTTGGGACATGGCGTTGGCATCTGAGATGAGAGCC-AGTGTAAGACCATGTTTGG
1 TAAGACCATG-TTGGGACATGGCATCGGCA-CTGACATGAGA-CCTAGTGTAAGACCATGTCTGG
* *
50671317 GACATGGCATCGGCGATGATATGTGTGCCAGTG
63 GACATGGCATCGGCAATGATATGTGTGCCAGTA
* * * * ** *
50671350 TAAGACCATGTCTGGGAGATGGAATCGGCGA-TGATATGTGTGCTAGTGTAAGACCATGTCTGGT
1 TAAGACCATGT-TGGGACATGGCATCGGC-ACTGACATGAGACCTAGTGTAAGACCATGTCTGGG
*
50671414 ACATGGCATCGGCAATGATATGTGTGCTAGTA
64 ACATGGCATCGGCAATGATATGTGTGCCAGTA
* * *
50671446 TATGACCATGCTTGGGACATGGCATCGGCACTGACATGAGACCTTGTGTAGGACCA
1 TAAGACCATG-TTGGGACATGGCATCGGCACTGACATGAGACCTAGTGTAAGACCA
50671502 CATCTAGGAT
Statistics
Matches: 125, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
95 2 0.02
96 98 0.78
97 24 0.19
98 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (95 bp):
TAAGACCATGTTGGGACATGGCATCGGCACTGACATGAGACCTAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCAATGATATGTGTGCCAGTA
Found at i:50671501 original size:48 final size:46
Alignment explanation
Indices: 50671250--50671501 Score: 211
Period size: 48 Copynumber: 5.2 Consensus size: 46
50671240 ATGAGATCCC
* * * *
50671250 GTGTAAGACCATGTTTGGGACATGGCGTTGGCATCTGAGATGAGAGCC-A
1 GTGTAAGACCATG-TTGGGACATGGCATCGGCA--TGATATGTGA-CCTA
*
50671299 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCC-A
1 GTGTAAGACCATG-TTGGGACATGGCATCGGC-ATGATATGTG-ACCTA
* * **
50671347 GTGTAAGACCATGTCTGGGAGATGGAATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGT-TGGGACATGGCATCGGC-ATGATATGTGACCTA
* **
50671395 GTGTAAGACCATGTCTGGTACATGGCATCGGCAATGATATGTGTGCTA
1 GTGTAAGACCATGT-TGGGACATGGCATCGGC-ATGATATGTGACCTA
* * * * *
50671443 GTATATGACCATGCTTGGGACATGGCATCGGCACTGACATGAGACCTT
1 GTGTAAGACCATG-TTGGGACATGGCATCGGCA-TGATATGTGACCTA
*
50671491 GTGTAGGACCA
1 GTGTAAGACCA
50671502 CATCTAGGAT
Statistics
Matches: 174, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.02
48 139 0.80
49 31 0.18
50 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (46 bp):
GTGTAAGACCATGTTGGGACATGGCATCGGCATGATATGTGACCTA
Found at i:50671909 original size:149 final size:149
Alignment explanation
Indices: 50671639--50671936 Score: 587
Period size: 149 Copynumber: 2.0 Consensus size: 149
50671629 CAAGATTATG
50671639 GTTAAGAAGTGGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
1 GTTAAGAAGTGGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
*
50671704 TTATTGAGACTATGAAATGTTGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
66 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
50671769 TGTTGCAATATCATGCTAA
131 TGTTGCAATATCATGCTAA
50671788 GTTAAGAAGTGGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
1 GTTAAGAAGTGGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
50671853 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
66 TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
50671918 TGTTGCAATATCATGCTAA
131 TGTTGCAATATCATGCTAA
50671937 CTTACATTGT
Statistics
Matches: 148, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 148 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.31
Consensus pattern (149 bp):
GTTAAGAAGTGGAGTAATATGTGAAAAGTGTTGAAAGGGTACAGGTATGAACACCAAGCTTATGG
TTATTGAGACTATGAAATGTCGAGACCTCAGTGAGCTAAGATGTATGAATTATGATTACGAATTT
TGTTGCAATATCATGCTAA
Found at i:50675144 original size:30 final size:30
Alignment explanation
Indices: 50675110--50675170 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50675100 TCCTTAACTC
50675110 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
50675140 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
50675170 A
1 A
50675171 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:50685908 original size:24 final size:23
Alignment explanation
Indices: 50685881--50685925 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
50685871 TTTCCTCTCA
50685881 TTTTAGGTTTTTTTTCATCTTTTT
1 TTTTAGGTTTTTTTTCA-CTTTTT
*
50685905 TTTTTGGTTTTTTTTCACTTT
1 TTTTAGGTTTTTTTTCACTTT
50685926 GATTGAGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.07, C:0.09, G:0.09, T:0.76
Consensus pattern (23 bp):
TTTTAGGTTTTTTTTCACTTTTT
Found at i:50688926 original size:26 final size:25
Alignment explanation
Indices: 50688897--50688950 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
50688887 AAAACAAGAA
* *
50688897 AAAGAAACAGAGAA-GAAACGAAATAG
1 AAAGAAAAAAAGAAGGAAA-GAAA-AG
50688923 AAAGAAAAAAAGAAGGAAAGAAAAG
1 AAAGAAAAAAAGAAGGAAAGAAAAG
50688948 AAA
1 AAA
50688951 AAGGAGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 16 0.64
27 4 0.16
ACGTcount: A:0.72, C:0.04, G:0.22, T:0.02
Consensus pattern (25 bp):
AAAGAAAAAAAGAAGGAAAGAAAAG
Found at i:50688943 original size:16 final size:16
Alignment explanation
Indices: 50688896--50688955 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
50688886 AAAAACAAGA
*
50688896 AAAAGAAACA-GAGAAG
1 AAAAGAAAAAGGA-AAG
* *
50688912 AAACGAAATA-GAAAG
1 AAAAGAAAAAGGAAAG
50688927 AAAA-AAAGAAGGAAAG
1 AAAAGAAA-AAGGAAAG
50688943 AAAAGAAAAAGGA
1 AAAAGAAAAAGGA
50688956 GAAATTAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
14 3 0.08
15 7 0.19
16 24 0.65
17 3 0.08
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.02
Consensus pattern (16 bp):
AAAAGAAAAAGGAAAG
Found at i:50696600 original size:27 final size:27
Alignment explanation
Indices: 50696559--50696700 Score: 184
Period size: 27 Copynumber: 5.3 Consensus size: 27
50696549 GAGGAAGCGT
*
50696559 TCTGGTGGCTATGCCACAATTATCTGA
1 TCTGGTGGCTCTGCCACAATTATCTGA
50696586 TCTGGTGGCTCTGCCAC-ATATATCTG-
1 TCTGGTGGCTCTGCCACAAT-TATCTGA
*
50696612 TCCTGGTGGCTATGCCACAATTATCTGA
1 T-CTGGTGGCTCTGCCACAATTATCTGA
* *
50696640 TCTAGTGGCTCTGCCAC-ATATATCTGT
1 TCTGGTGGCTCTGCCACAAT-TATCTGA
50696667 TCTGGTGGCTCTGCCACAA-TATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCTG-A
50696694 TCTGGTG
1 TCTGGTG
50696701 ACTTCGTCAC
Statistics
Matches: 101, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
26 11 0.11
27 86 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATTATCTGA
Found at i:50696642 original size:54 final size:54
Alignment explanation
Indices: 50696560--50696700 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
50696550 AGGAAGCGTT
50696560 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
* *
50696614 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
*
50696668 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
50696701 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
Found at i:50698119 original size:15 final size:15
Alignment explanation
Indices: 50698099--50698140 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
50698089 GCTGTAAATG
50698099 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
50698114 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
50698129 GGATTTCCTTAT
1 GGATTTCCTTAT
50698141 TCTGGGTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:50700893 original size:38 final size:38
Alignment explanation
Indices: 50700842--50701154 Score: 241
Period size: 38 Copynumber: 7.6 Consensus size: 38
50700832 GGAATGAAAA
50700842 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
50700880 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* *
50700927 AATGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
50700965 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
*
50701012 AACGTGGTG-TAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* * * * *
50701049 AACGTGGTCCTAAGTGGATATGCCATGATTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* *
50701096 AACGTGGTGCTAAGTGGATATACCACGTTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
50701134 AATGTGGTGCTAAGTGGATAT
1 AACGTGGTGCTAAGTGGATAT
50701155 GAAATGTGGT
Statistics
Matches: 221, Mismatches: 26, Indels: 56
0.73 0.09 0.18
Matches are distributed among these distances:
37 9 0.04
38 96 0.43
40 10 0.05
41 6 0.03
43 2 0.01
44 7 0.03
45 6 0.03
46 19 0.09
47 66 0.30
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:50700988 original size:85 final size:85
Alignment explanation
Indices: 50700842--50701155 Score: 558
Period size: 85 Copynumber: 3.7 Consensus size: 85
50700832 GGAATGAAAA
*
50700842 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
50700907 GTTACATATATTGATTCATT
66 GTTACATATATTGATTCATT
*
50700927 AATGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
50700992 GTTACATATATTGATTCATT
66 GTTACATATATTGATTCATT
* *
50701012 AACGTGGTG-TAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
50701076 ATTACATATATTGATTCATT
66 GTTACATATATTGATTCATT
* *
50701096 AACGTGGTGCTAAGTGGATATACCACGTTTAAACATGTAATGTGGTGCTAAGTGGATATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATG
50701156 AAATGTGGTG
Statistics
Matches: 219, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
84 81 0.37
85 138 0.63
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (85 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
GTTACATATATTGATTCATT
Found at i:50701131 original size:169 final size:170
Alignment explanation
Indices: 50700842--50701155 Score: 558
Period size: 169 Copynumber: 1.9 Consensus size: 170
50700832 GGAATGAAAA
* *
50700842 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCACG
* *
50700907 GTTACATATATTGATTCATTAATGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGG
66 ATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGG
50700972 TGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
131 TGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
*
50701012 AACGTGGTG-TAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCACG
* *
50701076 ATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGTTTAAACATGTAATGTGG
66 ATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGG
50701141 TGCTAAGTGGATATG
131 TGCTAAGTGGATATG
50701156 AAATGTGGTG
Statistics
Matches: 137, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
169 128 0.93
170 9 0.07
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (170 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCACG
ATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGG
TGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
Found at i:50706738 original size:30 final size:30
Alignment explanation
Indices: 50706702--50706759 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
50706692 CAAGCCAATC
* *
50706702 CCACACGGGCTGAG-CACACACCCGTGTGAA
1 CCACACGGGATG-GCCACACACCCATGTGAA
50706732 CCACACGGGATGGCCACACACCCATGTG
1 CCACACGGGATGGCCACACACCCATGTG
50706760 GCAGCCTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.26, C:0.38, G:0.26, T:0.10
Consensus pattern (30 bp):
CCACACGGGATGGCCACACACCCATGTGAA
Found at i:50710201 original size:15 final size:15
Alignment explanation
Indices: 50710181--50710222 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
50710171 GCTGTAAATG
50710181 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
50710196 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
50710211 GGATTTCCTTAT
1 GGATTTCCTTAT
50710223 TCTGGGTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:50712968 original size:38 final size:38
Alignment explanation
Indices: 50712917--50713246 Score: 257
Period size: 38 Copynumber: 8.0 Consensus size: 38
50712907 GGAATGAAAA
50712917 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
50712955 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* * *
50713002 AATGTGGTGCTAAGTGAATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
50713040 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
*
50713087 AACGTGGTG-TAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* * * * *
50713124 AACGTGGTCCTAAGTGGATATGCCATGATTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* *
50713171 AACGTGGTGCTAAGTGGATATACCACGTTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
50713209 AATGTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
50713247 TAATTTGAAA
Statistics
Matches: 233, Mismatches: 31, Indels: 56
0.73 0.10 0.17
Matches are distributed among these distances:
37 9 0.04
38 109 0.47
40 10 0.04
41 6 0.03
43 2 0.01
44 7 0.03
45 6 0.03
46 19 0.08
47 65 0.28
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:50713063 original size:85 final size:85
Alignment explanation
Indices: 50712917--50713239 Score: 567
Period size: 85 Copynumber: 3.8 Consensus size: 85
50712907 GGAATGAAAA
*
50712917 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
50712982 GTTACATATATTGATTCATT
66 GTTACATATATTGATTCATT
* *
50713002 AATGTGGTGCTAAGTGAATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
50713067 GTTACATATATTGATTCATT
66 GTTACATATATTGATTCATT
* *
50713087 AACGTGGTG-TAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
50713151 ATTACATATATTGATTCATT
66 GTTACATATATTGATTCATT
* *
50713171 AACGTGGTGCTAAGTGGATATACCACGTTTAAACATGTAATGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
50713236 GTTA
66 GTTA
50713240 TACATGTTAA
Statistics
Matches: 224, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
84 80 0.36
85 144 0.64
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (85 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
GTTACATATATTGATTCATT
Found at i:50713206 original size:169 final size:170
Alignment explanation
Indices: 50712917--50713239 Score: 567
Period size: 169 Copynumber: 1.9 Consensus size: 170
50712907 GGAATGAAAA
* *
50712917 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCACG
* *
50712982 GTTACATATATTGATTCATTAATGTGGTGCTAAGTGAATATACCACGGTTAAACATGTAACGTGG
66 ATTACATATATTGATTCATTAACGTGGTGCTAAGTGAATATACCACGGTTAAACATGTAACGTGG
50713047 TGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
131 TGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
*
50713087 AACGTGGTG-TAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCACG
* * *
50713151 ATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGTTTAAACATGTAATGTGG
66 ATTACATATATTGATTCATTAACGTGGTGCTAAGTGAATATACCACGGTTAAACATGTAACGTGG
50713216 TGCTAAGTGGATATGCCACGGTTA
131 TGCTAAGTGGATATGCCACGGTTA
50713240 TACATGTTAA
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
169 136 0.94
170 9 0.06
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (170 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTCCTAAGTGGATATGCCACG
ATTACATATATTGATTCATTAACGTGGTGCTAAGTGAATATACCACGGTTAAACATGTAACGTGG
TGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
Found at i:50718836 original size:30 final size:30
Alignment explanation
Indices: 50718800--50718857 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
50718790 CAAGCCAATC
* *
50718800 CCACACGGGCTGAG-CACACACCCGTGTGAA
1 CCACACGGGATG-GCCACACACCCATGTGAA
50718830 CCACACGGGATGGCCACACACCCATGTG
1 CCACACGGGATGGCCACACACCCATGTG
50718858 GCAGCCTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.26, C:0.38, G:0.26, T:0.10
Consensus pattern (30 bp):
CCACACGGGATGGCCACACACCCATGTGAA
Found at i:50725442 original size:67 final size:64
Alignment explanation
Indices: 50725324--50725448 Score: 160
Period size: 64 Copynumber: 1.9 Consensus size: 64
50725314 AGACATTATG
* * * * *
50725324 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGATAAGAGAGTTACGGGATAT
1 ATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
* *
50725388 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 ATGTAGCTAGGTCGCATGCGTGATACTA--TG-AGGACACCATGTAGACAAGAGAGCTACG
50725449 AGTAAATTGG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
64 25 0.49
66 2 0.04
67 24 0.47
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
Found at i:50733707 original size:43 final size:41
Alignment explanation
Indices: 50733625--50733772 Score: 120
Period size: 43 Copynumber: 3.5 Consensus size: 41
50733615 TGAGACATCG
* *
50733625 TGTAAGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAC-GGCATCGTATT--GATTTACA
* *
50733668 TATAAGACCATGTCTGGGACATCGGCATCGTATCTGATTT-CG
1 TGTAAGACCATGTCTGGGACA-CGGCATCGTAT-TGATTTACA
* * * * *
50733710 TGTAAGACCCTGTCTGGGATAGAGGCATCAATATTGAATTACA
1 TGTAAGACCATGTCTGGGACA-CGGCATC-GTATTGATTTACA
* *
50733753 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCATGTCTGGGAC
50733773 GTCGACATTG
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 30 0.36
43 50 0.60
44 3 0.04
45 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACACGGCATCGTATTGATTTACA
Found at i:50741741 original size:40 final size:40
Alignment explanation
Indices: 50741697--50741783 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
50741687 TTGCACAATT
* **
50741697 AGTGCCACATATAGCCAAAGCTATAC-CAATTCGCACACTA
1 AGTGCCACATATAACCAAAGCTAT-CTCAAAACGCACACTA
* * **
50741737 AGTGCTATATATAACTGAAGCTATCTCAAAACGCACACTA
1 AGTGCCACATATAACCAAAGCTATCTCAAAACGCACACTA
50741777 AGTGCCA
1 AGTGCCA
50741784 AAAGTAGTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (40 bp):
AGTGCCACATATAACCAAAGCTATCTCAAAACGCACACTA
Found at i:50744979 original size:16 final size:17
Alignment explanation
Indices: 50744959--50745003 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
50744949 TAATTTAGCC
50744959 ATTTATTTTTATTTC-A
1 ATTTATTTTTATTTCTA
*
50744975 TTTTATTTTT-TTTCTA
1 ATTTATTTTTATTTCTA
50744991 ATTT-TTTTTATTT
1 ATTTATTTTTATTT
50745004 GCTTCAGGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 9 0.36
16 16 0.64
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (17 bp):
ATTTATTTTTATTTCTA
Found at i:50745427 original size:25 final size:25
Alignment explanation
Indices: 50745395--50745445 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
50745385 TTTAGAAGTC
50745395 TGTGATACTTTCAAGATAAATGGTG
1 TGTGATACTTTCAAGATAAATGGTG
50745420 TGTGATACTTTCAAGATAAATGGTG
1 TGTGATACTTTCAAGATAAATGGTG
50745445 T
1 T
50745446 TTCTGACGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
TGTGATACTTTCAAGATAAATGGTG
Found at i:50756022 original size:16 final size:16
Alignment explanation
Indices: 50756003--50756033 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50755993 GCAAAACCTG
*
50756003 AAATGCTGAAAAGCCA
1 AAATGCCGAAAAGCCA
50756019 AAATGCCGAAAAGCC
1 AAATGCCGAAAAGCC
50756034 GAAAGTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:50756287 original size:28 final size:29
Alignment explanation
Indices: 50756247--50756304 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
50756237 GTGAGCATGA
*
50756247 ATATGAATGTGA-TTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
50756275 ATATAAATGTGATTTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
50756304 A
1 A
50756305 GATACAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:50763125 original size:42 final size:42
Alignment explanation
Indices: 50763079--50763173 Score: 190
Period size: 42 Copynumber: 2.3 Consensus size: 42
50763069 CATTGAATGC
50763079 CCACACGGCCTAAGACACGGGTGTGTCACTTGACCGTGTGAG
1 CCACACGGCCTAAGACACGGGTGTGTCACTTGACCGTGTGAG
50763121 CCACACGGCCTAAGACACGGGTGTGTCACTTGACCGTGTGAG
1 CCACACGGCCTAAGACACGGGTGTGTCACTTGACCGTGTGAG
50763163 CCACACGGCCT
1 CCACACGGCCT
50763174 GACCACACGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (42 bp):
CCACACGGCCTAAGACACGGGTGTGTCACTTGACCGTGTGAG
Found at i:50775036 original size:20 final size:21
Alignment explanation
Indices: 50775011--50775049 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50775001 CCCTTGAAAC
*
50775011 AGGGC-ACATGCCGGTGTGGA
1 AGGGCAACATGCCCGTGTGGA
50775031 AGGGCAACATGCCCGTGTG
1 AGGGCAACATGCCCGTGTG
50775050 TTCTTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.23, G:0.41, T:0.15
Consensus pattern (21 bp):
AGGGCAACATGCCCGTGTGGA
Found at i:50806577 original size:23 final size:24
Alignment explanation
Indices: 50806550--50806596 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
50806540 CTTAAATTTT
50806550 AATAATAATAAAAT-A-TTAAAATA
1 AATAA-AATAAAATAATTTAAAATA
*
50806573 AATAAAGTAAAATAATTTAAAATA
1 AATAAAATAAAATAATTTAAAATA
50806597 CTCCTTAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 6 0.29
24 8 0.38
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAAAATAAAATAATTTAAAATA
Found at i:50809394 original size:46 final size:46
Alignment explanation
Indices: 50809327--50809496 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
50809317 TGTAACCCGC
50809327 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
50809373 CCATAAGTGAACTTGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * *
50809419 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
50809466 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
50809497 TTCAGATGCT
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 61 0.59
47 29 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:50809447 original size:93 final size:93
Alignment explanation
Indices: 50809335--50809505 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
50809325 GCCCATAAGT
* *
50809335 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50809400 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
50809428 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50809493 CGAGTTCAGATGC
66 CGAGCTCAGATGC
50809506 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:50810945 original size:21 final size:21
Alignment explanation
Indices: 50810905--50810959 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
50810895 GGGGGTTAAA
**
50810905 ACGCCTGTGTGGAGGAAGGCAC
1 ACGCCTGTGT-GACAAAGGCAC
50810927 ACGACC-GTGTGACAAAGGCAC
1 ACG-CCTGTGTGACAAAGGCAC
50810948 ACGCCTGTGTGA
1 ACGCCTGTGTGA
50810960 ACTAGGGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 2 0.07
21 18 0.62
22 7 0.24
23 2 0.07
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (21 bp):
ACGCCTGTGTGACAAAGGCAC
Found at i:50819102 original size:48 final size:48
Alignment explanation
Indices: 50819047--50819170 Score: 140
Period size: 48 Copynumber: 2.6 Consensus size: 48
50819037 AGTGAAAATT
* * * *
50819047 TTACCTTGATTTCGCTTCGGGCCATGGTATAGGTATTTCAAAGATGAG
1 TTACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAAAGATAAG
* * * ***
50819095 TTACCTTGATTTGGCTACGAGCCATGGTATATGTACTCCGGGGATAAG
1 TTACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAAAGATAAG
* *
50819143 TTACCTTAATTTGGCTTTGGGCCATGGT
1 TTACCTTGATTTGGCTTCGGGCCATGGT
50819171 GTAAGTACGT
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (48 bp):
TTACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAAAGATAAG
Found at i:50820513 original size:34 final size:34
Alignment explanation
Indices: 50820475--50820554 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 34
50820465 CATGGCATCC
*
50820475 ATAGAGATAAGTCTACCAAGACAGTAAACACGAA
1 ATAGAGATAAGTCTACCAAGACAGTAAACACAAA
* * *
50820509 ATAGAGATAAGTCTATCAGGATAGTAAACACAAA
1 ATAGAGATAAGTCTACCAAGACAGTAAACACAAA
*
50820543 ATAGAGTTAAGT
1 ATAGAGATAAGT
50820555 TTGCTGGGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (34 bp):
ATAGAGATAAGTCTACCAAGACAGTAAACACAAA
Found at i:50823851 original size:18 final size:18
Alignment explanation
Indices: 50823828--50823875 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
50823818 CGCCAATATG
*
50823828 GTATTGATATTTATTTGA
1 GTATTGATACTTATTTGA
50823846 GTATTGATACTTATTTGA
1 GTATTGATACTTATTTGA
50823864 GTATTGATACTT
1 GTATTGATACTT
50823876 TTTCATAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (18 bp):
GTATTGATACTTATTTGA
Found at i:50828615 original size:34 final size:34
Alignment explanation
Indices: 50828570--50828715 Score: 141
Period size: 34 Copynumber: 4.3 Consensus size: 34
50828560 CATGACATCC
***
50828570 ATAGAGATAAGTCCGTTGGGACAGAAAACACAGA
1 ATAGAGATAAGTCCGCCAGGACAGAAAACACAGA
* * * * * *
50828604 ATATAGATAAGTTCTCCAGGATAGTAAACATAGA
1 ATAGAGATAAGTCCGCCAGGACAGAAAACACAGA
* *
50828638 ATAGAGATAAGTCCGCCAGGATAGTAAAA-ATAGA
1 ATAGAGATAAGTCCGCCAGGACAG-AAAACACAGA
* * *
50828672 ATAGAGATAAGTCCGCTAGGACAGTAAACACAAA
1 ATAGAGATAAGTCCGCCAGGACAGAAAACACAGA
*
50828706 ATAAAGATAA
1 ATAGAGATAA
50828716 TGTAACAACC
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
33 3 0.03
34 85 0.93
35 3 0.03
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.18
Consensus pattern (34 bp):
ATAGAGATAAGTCCGCCAGGACAGAAAACACAGA
Found at i:50828680 original size:68 final size:68
Alignment explanation
Indices: 50828570--50828715 Score: 159
Period size: 68 Copynumber: 2.1 Consensus size: 68
50828560 CATGACATCC
*** * * * * *
50828570 ATAGAGATAAGTCCGTTGGGACAGAAAACACAGAATATAGATAAGTTCTCCAGGATAGTAAACAT
1 ATAGAGATAAGTCCGCCAGGACAGAAAACACAGAATAGAGATAAGTCCGCCAGGACAGTAAACAC
*
50828635 AGA
66 AAA
* * *
50828638 ATAGAGATAAGTCCGCCAGGATAGTAAAA-ATAGAATAGAGATAAGTCCGCTAGGACAGTAAACA
1 ATAGAGATAAGTCCGCCAGGACAG-AAAACACAGAATAGAGATAAGTCCGCCAGGACAGTAAACA
50828702 CAAA
65 CAAA
*
50828706 ATAAAGATAA
1 ATAGAGATAA
50828716 TGTAACAACC
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
68 60 0.94
69 4 0.06
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.18
Consensus pattern (68 bp):
ATAGAGATAAGTCCGCCAGGACAGAAAACACAGAATAGAGATAAGTCCGCCAGGACAGTAAACAC
AAA
Found at i:50828708 original size:39 final size:34
Alignment explanation
Indices: 50828570--50828699 Score: 145
Period size: 34 Copynumber: 3.8 Consensus size: 34
50828560 CATGACATCC
*** *
50828570 ATAGAGATAAGTCCGTTGGGACAG-AAAACACAGA
1 ATAGAGATAAGTCCGCCAGGACAGTAAAA-ATAGA
* * * * *
50828604 ATATAGATAAGTTCTCCAGGATAGTAAACATAGA
1 ATAGAGATAAGTCCGCCAGGACAGTAAAAATAGA
*
50828638 ATAGAGATAAGTCCGCCAGGATAGTAAAAATAGA
1 ATAGAGATAAGTCCGCCAGGACAGTAAAAATAGA
*
50828672 ATAGAGATAAGTCCGCTAGGACAGTAAA
1 ATAGAGATAAGTCCGCCAGGACAGTAAA
50828700 CACAAAATAA
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
34 77 0.96
35 3 0.04
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (34 bp):
ATAGAGATAAGTCCGCCAGGACAGTAAAAATAGA
Found at i:50843881 original size:15 final size:15
Alignment explanation
Indices: 50843861--50843891 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50843851 AATTGTTTTC
50843861 TATTTATTTGAACGA
1 TATTTATTTGAACGA
*
50843876 TATTTATTTTAACGA
1 TATTTATTTGAACGA
50843891 T
1 T
50843892 GAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (15 bp):
TATTTATTTGAACGA
Found at i:50854492 original size:24 final size:25
Alignment explanation
Indices: 50854450--50854496 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
50854440 TAAACTCCTC
*
50854450 CTGAGCTGATAAACAGTAAGCTCAA
1 CTGAGCTGACAAACAGTAAGCTCAA
*
50854475 CTGAGCTG-CAAACGGTAAGCTC
1 CTGAGCTGACAAACAGTAAGCTC
50854497 CATTGTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (25 bp):
CTGAGCTGACAAACAGTAAGCTCAA
Found at i:50854584 original size:46 final size:45
Alignment explanation
Indices: 50854489--50854587 Score: 108
Period size: 46 Copynumber: 2.2 Consensus size: 45
50854479 GCTGCAAACG
* * * *
50854489 GTAAGCTCCATTGTGATGAACAGTAAGCTCTTTCAAGCTAAATCG
1 GTAAGCTCCAATGAGATGAACAGTAAGCTCTTACAAGCTAAATCA
* * * * *
50854534 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGTTGAATTA
1 GTAAGCTCCAATGAGATG-AACAGTAAGCTCTTACAAGCTAAATCA
50854580 GTAAGCTC
1 GTAAGCTC
50854588 ATACAAGCTG
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
45 15 0.34
46 29 0.66
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (45 bp):
GTAAGCTCCAATGAGATGAACAGTAAGCTCTTACAAGCTAAATCA
Found at i:50863195 original size:38 final size:40
Alignment explanation
Indices: 50863151--50863228 Score: 106
Period size: 38 Copynumber: 2.0 Consensus size: 40
50863141 TGAAATCAAC
50863151 AATATATAAAAAATAATGTATAA-TATAAATTTT-AAAAT
1 AATATATAAAAAATAATGTATAAGTATAAATTTTGAAAAT
***
50863189 AATATATAATGTATAATGTATAATGTATAAATTTTGAAAA
1 AATATATAAAAAATAATGTATAA-GTATAAATTTTGAAAA
50863229 CAAAAACACA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 20 0.59
40 10 0.29
41 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (40 bp):
AATATATAAAAAATAATGTATAAGTATAAATTTTGAAAAT
Found at i:50863204 original size:14 final size:14
Alignment explanation
Indices: 50863187--50863218 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
50863177 AAATTTTAAA
50863187 ATAATATATAATGT
1 ATAATATATAATGT
*
50863201 ATAATGTATAATGT
1 ATAATATATAATGT
50863215 ATAA
1 ATAA
50863219 ATTTTGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (14 bp):
ATAATATATAATGT
Found at i:50863267 original size:14 final size:16
Alignment explanation
Indices: 50863248--50863280 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
50863238 ATGTATAAAG
50863248 GAAATTTTA-A-AATA
1 GAAATTTTACATAATA
50863262 GAAATTTTACATAATA
1 GAAATTTTACATAATA
50863278 GAA
1 GAA
50863281 TAATTTAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (16 bp):
GAAATTTTACATAATA
Found at i:50863417 original size:25 final size:22
Alignment explanation
Indices: 50863360--50863401 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50863350 TAAGATAATT
50863360 TTAAAAAAATAATAATAAAATA
1 TTAAAAAAATAATAATAAAATA
*
50863382 TTAAATAAA-AATGAATAAAA
1 TTAAAAAAATAAT-AATAAAA
50863402 ACATAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (22 bp):
TTAAAAAAATAATAATAAAATA
Found at i:50864613 original size:27 final size:27
Alignment explanation
Indices: 50864562--50864651 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
50864552 GTGACAGAGT
50864562 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* * *
50864591 CACCAGAATAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
50864618 CACAAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
50864646 CACCAG
1 CACCAG
50864652 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:50864803 original size:28 final size:28
Alignment explanation
Indices: 50864756--50864820 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
50864746 AAATTAACCC
*
50864756 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
50864784 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
50864812 TAGGGGTAT
1 TAGGGGTAT
50864821 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:50868038 original size:43 final size:45
Alignment explanation
Indices: 50867957--50868051 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 45
50867947 CTGCTTAGGG
** * *
50867957 AGATAAGATCTTCAATCTTCAGTCTACTTTCTTACTACCTTAGAA
1 AGATAAGATCTTCAATCTTCAACCTACTCTCTTACTACCTCAGAA
* * *
50868002 AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTACTCTCTTACTACCTCAGAA
50868045 AGATAAG
1 AGATAAG
50868052 GCTAGTAGCT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 34 0.79
44 1 0.02
45 8 0.19
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTACTCTCTTACTACCTCAGAA
Found at i:50868183 original size:176 final size:177
Alignment explanation
Indices: 50867852--50868276 Score: 489
Period size: 176 Copynumber: 2.4 Consensus size: 177
50867842 AGACTACAAA
* * *
50867852 CTCTTGCTACCTTAGAGAGATAAGGCTAATGGCTAAAATCTGCTCCATTGCCGGTACATGGAGAT
1 CTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGAT
* * * *
50867917 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCT
66 AAGATTCGCCATCTTCGATCTACCCCACTACTGCCTAGGGAGATAAGATCTTAAATCTTCAGTCT
* *** *
50867982 ACTTTCTTACTACCTTAGAAAGATAAGAC-TCAATCTTCAACCTGCT
131 ACTTCCTTACTACAACAGAAAGATAAGACTTCAATATTCAACCTGCT
* *
50868028 CTCTTGCTACCTCAGAGAGATAAGGCTAGTAGCTAAAATCTGCTCCATTACCGATACATGGAGAT
1 CTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGAT
*
50868093 AAGATTCGCCATC-TCTGATCTACCCCACTACTGCCTAGGGAGATAAGATCTGTAAAT-TTTAGT
66 AAGATTCGCCATCTTC-GATCTACCCCACTACTGCCTAGGGAGATAAGATCT-TAAATCTTCAGT
** * * * ** * **
50868156 CTGGTTCCTTGCTATAACAGGAAGATAAGACTTGTATATTGAGTCTGCT
129 CTACTTCCTTACTACAACAGAAAGATAAGACTTCAATATTCAACCTGCT
* * * * * * * *
50868205 C-CAACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCAATACATGGAG
1 CTC--TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
50868269 ATAAGATT
64 ATAAGATT
50868277 TGTCATATTT
Statistics
Matches: 209, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
175 2 0.01
176 133 0.64
177 16 0.08
178 58 0.28
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (177 bp):
CTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGAT
AAGATTCGCCATCTTCGATCTACCCCACTACTGCCTAGGGAGATAAGATCTTAAATCTTCAGTCT
ACTTCCTTACTACAACAGAAAGATAAGACTTCAATATTCAACCTGCT
Done.