Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 155 of 332
Found at i:50868227 original size:45 final size:44
Alignment explanation
Indices: 50868173--50868320 Score: 111
Period size: 45 Copynumber: 3.3 Consensus size: 44
50868163 CTTGCTATAA
*
50868173 CAGGAAGATAAGACTTGTATATTGAGTCTGCTCCAACTGCAACTT
1 CAGGGAGATAAGACTTGTATATTGAGTCTGCTCC-ACTGCAACTT
* * *** * * * * *
50868218 CAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCTATTGCCAA-TA
1 CAGGGAGATAAGACTTGTATATTGAGTCTGCTCCACTG-CAACTT
* * *
50868262 CATGGAGATAAGATTTGTCATATTTG-GTTTGCTCCACTGCAACTT
1 CAGGGAGATAAGACTTGT-ATA-TTGAGTCTGCTCCACTGCAACTT
*
50868307 CAGGGAAATAAGAC
1 CAGGGAGATAAGAC
50868321 CTATCACTTC
Statistics
Matches: 72, Mismatches: 27, Indels: 8
0.67 0.25 0.07
Matches are distributed among these distances:
44 21 0.29
45 49 0.68
46 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
CAGGGAGATAAGACTTGTATATTGAGTCTGCTCCACTGCAACTT
Found at i:50868661 original size:64 final size:62
Alignment explanation
Indices: 50868475--50868669 Score: 282
Period size: 64 Copynumber: 3.0 Consensus size: 62
50868465 TTCATGCATC
* * * * *
50868475 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAAATATG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATC-AAATGAATCAAAT-GTCCTAACTAGATGTG
*
50868539 ACGCTGATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATC-AAATGAATCAAATG-TCCTAACTAGATGTG
50868603 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAGTGAATCAAATGTGCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAA-TGAATCAAATGT-CCTAACTAGATGTG
50868667 ATG
1 ATG
50868670 TGAATGATAT
Statistics
Matches: 120, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
63 4 0.03
64 116 0.97
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (62 bp):
ATGCTGATGTCAAATAATTAGGATGCTATGATCAAATGAATCAAATGTCCTAACTAGATGTG
Found at i:50869766 original size:20 final size:21
Alignment explanation
Indices: 50869717--50869766 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
50869707 TATCCTTTTC
* *
50869717 TTTCTTTTTTTATTTTTATAT
1 TTTCTTTTTCTATTTTTAAAT
*
50869738 TTTCCTTTTCT-TTTTTAAAT
1 TTTCTTTTTCTATTTTTAAAT
50869758 TTTCTTTTT
1 TTTCTTTTT
50869767 TTGTTTTGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTCTTTTTCTATTTTTAAAT
Found at i:50869773 original size:20 final size:19
Alignment explanation
Indices: 50869717--50869773 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
50869707 TATCCTTTTC
*
50869717 TTTCTTTTTTTATTTTTATAT
1 TTTC-TTTTTT-TTTTTAAAT
*
50869738 TTTCCTTTTCTTTTTTAAAT
1 TTT-CTTTTTTTTTTTAAAT
50869758 TTTCTTTTTTTGTTTT
1 TTTCTTTTTTT-TTTT
50869774 GATTTTGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 7 0.23
20 15 0.48
21 8 0.26
22 1 0.03
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTCTTTTTTTTTTTAAAT
Found at i:50872899 original size:40 final size:39
Alignment explanation
Indices: 50872769--50873030 Score: 276
Period size: 40 Copynumber: 6.6 Consensus size: 39
50872759 TCCTCGTTCA
* * *
50872769 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
50872808 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
50872847 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
50872886 GAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * *
50872926 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCAC
* * * * *
50872966 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
50873007 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
50873031 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 22, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
39 78 0.40
40 105 0.54
41 12 0.06
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:50872971 original size:80 final size:79
Alignment explanation
Indices: 50872734--50873030 Score: 282
Period size: 80 Copynumber: 3.8 Consensus size: 79
50872724 AAATCACGTA
* ** * * *
50872734 CCTTCGGGATTTAA-CCGGATATAGCT-CCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTA
1 CCTTCGGGACTTAACCCGGATATAG-TACCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
*
50872797 GTAACTCACACAATG
65 GTAACTCGCACAATG
* * * * * * *
50872812 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTAA
1 CCTTCGGGACTTAACCCGGATATAGTACCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
50872876 TAACTCGCACGAATG
66 TAACTCGCAC-AATG
* * *
50872891 CCTTCGGGACTTAACCCGGATTTAGTACCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT-
1 CCTTCGGGACTTAACCCGGATATAGTACCTCGCACAAATGCCTTCGGGACTTAACCCGG-ATTTA
*
50872955 GTATCTCGCACAAATG
65 GTAACTCGCAC-AATG
** * * * *
50872971 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGT-ACCTCGCACAAATGCCTTCGGGACTTAACCCGGA
50873031 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
78 46 0.26
79 50 0.28
80 70 0.39
81 14 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATATAGTACCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
TAACTCGCACAATG
Found at i:50873039 original size:41 final size:41
Alignment explanation
Indices: 50872962--50873039 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50872952 TTTGTATCTC
* * *
50872962 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50873003 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50873040 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50880765 original size:39 final size:40
Alignment explanation
Indices: 50880720--50880942 Score: 242
Period size: 39 Copynumber: 5.7 Consensus size: 40
50880710 GCTCCTCGTT
* * * *
50880720 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
50880760 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
50880799 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
50880838 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
50880877 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50880918 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50880943 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
38 14 0.09
39 76 0.48
40 56 0.36
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50880951 original size:41 final size:41
Alignment explanation
Indices: 50880874--50880951 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50880864 TTTGTATCTC
* * *
50880874 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50880915 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50880952 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50887142 original size:15 final size:16
Alignment explanation
Indices: 50887112--50887147 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
50887102 ACATGGTAAG
*
50887112 GTTTTTCTTTTCTTTT
1 GTTTTCCTTTTCTTTT
50887128 GTTTTCCTTTT-TTTT
1 GTTTTCCTTTTCTTTT
50887143 GTTTT
1 GTTTT
50887148 AAATGCGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.11, G:0.08, T:0.81
Consensus pattern (16 bp):
GTTTTCCTTTTCTTTT
Found at i:50888113 original size:23 final size:22
Alignment explanation
Indices: 50887986--50888118 Score: 92
Period size: 23 Copynumber: 5.8 Consensus size: 22
50887976 GCTAATAAAT
50887986 AGTAAGCTC-ATTGAGCTGCAAAC
1 AGTAAGCTCTA-TGAGCTG-AAAC
* *
50888009 GGTAAACTCTATTGAGCTG-AAC
1 AGTAAGCTCTA-TGAGCTGAAAC
* * *
50888031 AGTAAGCTCTTTCGAGTTGAATC
1 AGTAAGCTCTAT-GAGCTGAAAC
* *
50888054 -GATAAGCTCTAATGAGTTAAAAC
1 AG-TAAGCTCT-ATGAGCTGAAAC
* *
50888077 AGTAAGCTCTTATGAGATGAATC
1 AGTAAGCTC-TATGAGCTGAAAC
50888100 AGTAAGCTCATATGAGCTG
1 AGTAAGCTC-TATGAGCTG
50888119 TGGTGAGTCC
Statistics
Matches: 88, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
21 1 0.01
22 17 0.19
23 58 0.66
24 12 0.14
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (22 bp):
AGTAAGCTCTATGAGCTGAAAC
Found at i:50891031 original size:27 final size:26
Alignment explanation
Indices: 50891001--50891065 Score: 103
Period size: 27 Copynumber: 2.5 Consensus size: 26
50890991 ATTATTGAGG
* *
50891001 TTATTAGTTTATCGATAAATAAATATT
1 TTATTAATTTATCAATAAATAAATA-T
50891028 TTATTAATTTATCAATAAATAAATAT
1 TTATTAATTTATCAATAAATAAATAT
50891054 TTATTAATTTAT
1 TTATTAATTTAT
50891066 AGAATATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 13 0.36
27 23 0.64
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (26 bp):
TTATTAATTTATCAATAAATAAATAT
Found at i:50894875 original size:35 final size:35
Alignment explanation
Indices: 50894829--50894896 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
50894819 ACTGGCCTAG
50894829 ACTATGCTTATATGTTTTTCTTGAATGAATCGTAA
1 ACTATGCTTATATGTTTTTCTTGAATGAATCGTAA
50894864 ACTATGCTTATATGTTTTTCTTGAATGAATCGT
1 ACTATGCTTATATGTTTTTCTTGAATGAATCGT
50894897 TGGCGGACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.47
Consensus pattern (35 bp):
ACTATGCTTATATGTTTTTCTTGAATGAATCGTAA
Found at i:50895392 original size:58 final size:58
Alignment explanation
Indices: 50895252--50895437 Score: 200
Period size: 58 Copynumber: 3.2 Consensus size: 58
50895242 GTAAGATAAA
* * * * * *
50895252 CCTTAGTGGACTTCCCAACACTAGATAGTCTTAACGGACATCC-CTTCATTTGATAAT
1 CCTTAGCGTACTTCCCAAAACTAGATAGTCCTAACAGACATCCTCTTCATTTGATAGT
* *
50895309 CCTT-G-GTTGACTTCCCAACAA-TAGATAGTCCTAACAGACATCCTCCTCATTCGATAGT
1 CCTTAGCG-T-ACTTCCCAA-AACTAGATAGTCCTAACAGACATCCTCTTCATTTGATAGT
* * *
50895367 CCTTAGCGTACTTCTCAAAACTAGATAGTCCTAATAGACATCCTCTTCATTTGTTAGT
1 CCTTAGCGTACTTCCCAAAACTAGATAGTCCTAACAGACATCCTCTTCATTTGATAGT
* *
50895425 CCCTAGCGAACTT
1 CCTTAGCGTACTT
50895438 TATAGAATAG
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
55 1 0.01
56 1 0.01
57 35 0.32
58 68 0.63
59 2 0.02
60 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.32
Consensus pattern (58 bp):
CCTTAGCGTACTTCCCAAAACTAGATAGTCCTAACAGACATCCTCTTCATTTGATAGT
Found at i:50909252 original size:28 final size:27
Alignment explanation
Indices: 50909195--50909346 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
50909185 TAAATTGTGC
*
50909195 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
50909222 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
50909250 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
50909277 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
50909305 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
50909332 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50909347 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:50909259 original size:55 final size:55
Alignment explanation
Indices: 50909195--50909346 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
50909185 TAAATTGTGC
*
50909195 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
50909250 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
50909305 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
50909347 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:50917300 original size:28 final size:27
Alignment explanation
Indices: 50917243--50917394 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
50917233 TAAATTGTGC
*
50917243 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
50917270 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
50917298 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
50917325 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
50917353 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
50917380 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50917395 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:50917307 original size:55 final size:55
Alignment explanation
Indices: 50917243--50917394 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
50917233 TAAATTGTGC
*
50917243 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
50917298 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
50917353 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
50917395 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:50924213 original size:17 final size:17
Alignment explanation
Indices: 50924191--50924261 Score: 79
Period size: 17 Copynumber: 4.1 Consensus size: 17
50924181 TAAATAAAAG
*
50924191 AATATTATAACAATAAT
1 AATATTATAATAATAAT
*
50924208 AATATTATTATAATAAT
1 AATATTATAATAATAAT
* *
50924225 CATATTAATATTAATAAT
1 AATATT-ATAATAATAAT
* *
50924243 CATATTATAGTAATAAT
1 AATATTATAATAATAAT
50924260 AA
1 AA
50924262 ATAAATGAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
17 31 0.67
18 15 0.33
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (17 bp):
AATATTATAATAATAAT
Found at i:50924603 original size:4 final size:4
Alignment explanation
Indices: 50924594--50924728 Score: 53
Period size: 4 Copynumber: 33.5 Consensus size: 4
50924584 ATGAAGGAAT
* * * *
50924594 AATA AATA AATG AATA AA-A GAGTTA AAATA AA-A AATA AATA AGTG AAT-
1 AATA AATA AATA AATA AATA -A-ATA A-ATA AATA AATA AATA AATA AATA
* * * * * * * * *
50924642 AATA TATA AATA GATA AGTA TATG AGTA AATA AATG TATAA AATAA AATG
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT-A AAT-A AATA
* * *
50924692 AAT- AATG AATA AATA AATA AGTA AATA AATG AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
50924729 AGAATAAAAA
Statistics
Matches: 94, Mismatches: 30, Indels: 14
0.68 0.22 0.10
Matches are distributed among these distances:
3 10 0.11
4 72 0.77
5 11 0.12
6 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:50924727 original size:53 final size:53
Alignment explanation
Indices: 50924619--50924737 Score: 129
Period size: 53 Copynumber: 2.3 Consensus size: 53
50924609 AAAAGAGTTA
* * * * *
50924619 AAATAAAA-AAT-AAAT-AAGTGAATAATATATAAATAGATAAGTATATGAGT
1 AAATAAAAGAATAAAATAAAATGAATAATATATAAATAAATAAGTAAATAAAT
* *
50924669 AAATAAATGTATAAAATAAAATGAATAATGA-ATAAATAAATAAGTAAATAAAT
1 AAATAAAAGAATAAAATAAAATGAATAAT-ATATAAATAAATAAGTAAATAAAT
*
50924722 GAATAAAAGAATAAAA
1 AAATAAAAGAATAAAA
50924738 AGGATTTAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
50 7 0.13
51 2 0.04
52 4 0.07
53 41 0.75
54 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (53 bp):
AAATAAAAGAATAAAATAAAATGAATAATATATAAATAAATAAGTAAATAAAT
Found at i:50924734 original size:16 final size:15
Alignment explanation
Indices: 50924669--50924736 Score: 57
Period size: 16 Copynumber: 4.5 Consensus size: 15
50924659 GTATATGAGT
*
50924669 AAATAAATGTATAAA
1 AAATAAATGAATAAA
* *
50924684 ATA-AAATGAATAAT
1 AAATAAATGAATAAA
* * *
50924698 GAATAAATAAATAAGT
1 AAATAAATGAATAA-A
50924714 AAATAAATGAATAAA
1 AAATAAATGAATAAA
50924729 AGAATAAA
1 A-AATAAA
50924737 AAGGATTTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
14 10 0.24
15 12 0.29
16 19 0.46
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (15 bp):
AAATAAATGAATAAA
Found at i:50929621 original size:28 final size:30
Alignment explanation
Indices: 50929556--50929625 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
50929546 CATGATGACC
* *
50929556 CCCGAGTGTCACACACGGCCTAGACACATG
1 CCCGTGTGTCACACACGGCCTAGACACACG
*
50929586 CCCGTGTGTCACACACTGCCTAGACACACG
1 CCCGTGTGTCACACACGGCCTAGACACACG
*
50929616 CCTGTGTGTC
1 CCCGTGTGTC
50929626 TACCCGTGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.21, C:0.37, G:0.23, T:0.19
Consensus pattern (30 bp):
CCCGTGTGTCACACACGGCCTAGACACACG
Found at i:50930374 original size:45 final size:43
Alignment explanation
Indices: 50930308--50930431 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 43
50930298 ACAAGTTACA
* *
50930308 AATCTTATCTCCCCAATGTTGCAGTTGAGCAGATTAAAGATAACG
1 AATCTTATCTCCCTAA-GTTGCAGTGGAGCAGATTAAAGAT-ACG
* * * *
50930353 AATCTTATTTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCTACT
1 AATCTTATCTCCCTAA-GTTGCAGTGGAGCAGATTAAAGATACG
*
50930397 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATT
1 AATCTTATCTCCCT-AAGTTGCAGTGGAGCAGATT
50930432 GAAGCGACAA
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 32 0.46
45 37 0.54
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (43 bp):
AATCTTATCTCCCTAAGTTGCAGTGGAGCAGATTAAAGATACG
Found at i:50930423 original size:44 final size:44
Alignment explanation
Indices: 50930308--50930467 Score: 159
Period size: 44 Copynumber: 3.6 Consensus size: 44
50930298 ACAAGTTACA
* * * * *
50930308 AATCTTATCTCCC-CAATGTTGCAGTTGAGCAGATTAAAGATAAC
1 AATCTTATCTCCCTGAAGGTTGCAGTGGAGCAGATTGAAGCT-AC
*
50930352 GAATCTTATTTCCCT-AAGGTTGCAGTGGAGCAGATTGAAGCTAC
1 -AATCTTATCTCCCTGAAGGTTGCAGTGGAGCAGATTGAAGCTAC
* *
50930396 TAATCTTATCTCCCTGAA-GTTGTAGTGGAGCAGATTGAAGCGAC
1 -AATCTTATCTCCCTGAAGGTTGCAGTGGAGCAGATTGAAGCTAC
*
50930440 AATTTCTATAC-CCCTGAA-GTTGCAGTGG
1 AATCT-TAT-CTCCCTGAAGGTTGCAGTGG
50930468 GTTAGAATGA
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
43 4 0.04
44 58 0.58
45 38 0.38
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:50937342 original size:25 final size:25
Alignment explanation
Indices: 50937308--50937360 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
50937298 CTCAAGAGTT
* *
50937308 ACACAGCCTGGCACACGGGCGTGTG
1 ACACAGCCTGCCACACGAGCGTGTG
*
50937333 ACACGGCCTGCCACACGAGCGTGTG
1 ACACAGCCTGCCACACGAGCGTGTG
50937358 ACA
1 ACA
50937361 TGGCTGTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.23, C:0.34, G:0.32, T:0.11
Consensus pattern (25 bp):
ACACAGCCTGCCACACGAGCGTGTG
Found at i:50944445 original size:12 final size:13
Alignment explanation
Indices: 50944423--50944451 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50944413 TAATTAAATG
50944423 AATTAAAAAGCCA
1 AATTAAAAAGCCA
50944436 AATT-AAAAGCCA
1 AATTAAAAAGCCA
50944448 AATT
1 AATT
50944452 TTTGTCCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:50945280 original size:42 final size:42
Alignment explanation
Indices: 50945208--50945318 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
50945198 GATATTTACG
* * * *
50945208 TGTAAGACCATATCTGGGATATGGCATCGATACGGGACTTCG
1 TGTAAGACCATAGCTAGGATATGGCATCGATACGAGACTTCA
* *
50945250 T-TAAGACCATAGCTAGGCTATTGGCATCGATACGAGATTTCA
1 TGTAAGACCATAGCTAGGATA-TGGCATCGATACGAGACTTCA
* *
50945292 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATAGCTAGGATATGGCAT
50945319 TGGTATGGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
41 16 0.28
42 26 0.45
43 16 0.28
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGCTAGGATATGGCATCGATACGAGACTTCA
Found at i:50947461 original size:385 final size:385
Alignment explanation
Indices: 50946751--50947524 Score: 1476
Period size: 385 Copynumber: 2.0 Consensus size: 385
50946741 GGGCGTGTGA
50946751 TCCGATTGTGTGTCCCCTGCACCTAAATTGTTGCAAAACAGAATGCTCAGTATCGAGCACACGGG
1 TCCGATTGTGTGTCCCCTGCACCTAAATTGTTGCAAAACAGAATGCTCAGTATCGAGCACACGGG
50946816 CGTGTGACTTGGCTATGTGACTTCAATTTGTTCTTGGGTGACAAAAAGAGAGTTACACGGGTTCG
66 CGTGTGACTTGGCTATGTGACTTCAATTTGTTCTTGGGTGACAAAAAGAGAGTTACACGGGTTCG
* *
50946881 AGACACGGGTGTGTGTGACCACACGGCCTGCCCACACAGGCGTGTCCCAGGCCACACGGGCGTGT
131 AGACACGGGTGTGTGTGACCACACGGCCTGCCCACACAGGCGTGTCCCAGGCCACACGGACATGT
50946946 GACCCCTGTTTAGGCAAAAATCTTCTAAGTGTTGTAAAATTTTCTAAAGTTCTCGATTTAGTCCC
196 GACCCCTGTTTAGGCAAAAATCTTCTAAGTGTTGTAAAATTTTCTAAAGTTCTCGATTTAGTCCC
* * *
50947011 GAATCACTTCCAAAGCACATTTTGGGTCTTGTAGGCTCGAATTAGGGACTTTATGCTTGATTTCA
261 GAATCACTTCCAAAGCACATTTTGGGTCTCGTAAGCTCGAATTAGGGACTTGATGCTTGATTTCA
50947076 AAAAGTTTTAATTTGGACGAAAATTTATGACTCGAAAATGCATGTTTGCTTGTGTTTAAG
326 AAAAGTTTTAATTTGGACGAAAATTTATGACTCGAAAATGCATGTTTGCTTGTGTTTAAG
50947136 TCCGATTGTGTGTCCCCTGCACCTAAATTGTTGCAAAACAGAATGCTCAGTATCGAGCACACGGG
1 TCCGATTGTGTGTCCCCTGCACCTAAATTGTTGCAAAACAGAATGCTCAGTATCGAGCACACGGG
50947201 CGTGTGACTTGGCTATGTGACTTCAATTTGTTCTTGGGTGACAAAAAGAGAGTTACACGGGTTCG
66 CGTGTGACTTGGCTATGTGACTTCAATTTGTTCTTGGGTGACAAAAAGAGAGTTACACGGGTTCG
*
50947266 AGACATGGGTGTGTGTGACCACACGGCCTGCCCACACAGGCGTGTCCCAGGCCACACGGACATGT
131 AGACACGGGTGTGTGTGACCACACGGCCTGCCCACACAGGCGTGTCCCAGGCCACACGGACATGT
*
50947331 GACCCCTGTTTAGGCAAAAATCTTCTAAGTGTTGTAAAATTTTCTAAAGTTCTCGATTTAGTCTC
196 GACCCCTGTTTAGGCAAAAATCTTCTAAGTGTTGTAAAATTTTCTAAAGTTCTCGATTTAGTCCC
50947396 GAATCACTTCCAAAGCACATTTTGGGTCTCGTAAGCTCGAATTAGGGACTTGATGCTTGATTTCA
261 GAATCACTTCCAAAGCACATTTTGGGTCTCGTAAGCTCGAATTAGGGACTTGATGCTTGATTTCA
*
50947461 AAAAGTTTTAATTTGGACGAAAATTTATGACTCGGAAATGCATGTTTGCTTGTGTTTAAG
326 AAAAGTTTTAATTTGGACGAAAATTTATGACTCGAAAATGCATGTTTGCTTGTGTTTAAG
50947521 TCCG
1 TCCG
50947525 GTAATGCCTC
Statistics
Matches: 381, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
385 381 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (385 bp):
TCCGATTGTGTGTCCCCTGCACCTAAATTGTTGCAAAACAGAATGCTCAGTATCGAGCACACGGG
CGTGTGACTTGGCTATGTGACTTCAATTTGTTCTTGGGTGACAAAAAGAGAGTTACACGGGTTCG
AGACACGGGTGTGTGTGACCACACGGCCTGCCCACACAGGCGTGTCCCAGGCCACACGGACATGT
GACCCCTGTTTAGGCAAAAATCTTCTAAGTGTTGTAAAATTTTCTAAAGTTCTCGATTTAGTCCC
GAATCACTTCCAAAGCACATTTTGGGTCTCGTAAGCTCGAATTAGGGACTTGATGCTTGATTTCA
AAAAGTTTTAATTTGGACGAAAATTTATGACTCGAAAATGCATGTTTGCTTGTGTTTAAG
Found at i:50950640 original size:14 final size:14
Alignment explanation
Indices: 50950621--50950650 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50950611 ATTTTATTCC
50950621 AAAATTTCGAAAAT
1 AAAATTTCGAAAAT
*
50950635 AAAATTTCTAAAAT
1 AAAATTTCGAAAAT
50950649 AA
1 AA
50950651 TTATTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (14 bp):
AAAATTTCGAAAAT
Found at i:50950751 original size:18 final size:18
Alignment explanation
Indices: 50950724--50950761 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
50950714 TTTGAAATTA
*
50950724 TTTATTAATTTAT-TATTT
1 TTTATGAATTT-TCTATTT
50950742 TTTATGAATTTTCTATTT
1 TTTATGAATTTTCTATTT
50950760 TT
1 TT
50950762 ATAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTATGAATTTTCTATTT
Found at i:50950927 original size:16 final size:16
Alignment explanation
Indices: 50950877--50950930 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
50950867 GTTTGGTTCA
* *
50950877 CTGTAATGAAATAGGG
1 CTGTAATGGAATAGAG
* *
50950893 CTATAATTGAATAGAG
1 CTGTAATGGAATAGAG
50950909 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
50950925 CTGTAA
1 CTGTAA
50950931 CCAGTAATTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:50950999 original size:44 final size:46
Alignment explanation
Indices: 50950913--50951006 Score: 147
Period size: 44 Copynumber: 2.1 Consensus size: 46
50950903 ATAGAGCTGT
50950913 AATGGAATAGAGCTGTAACCAGTAATTCAAATGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAACCAGTAATTCAAATGTTTGGTTGAATGG
* **
50950959 AATGGAATAGAGCTGTAA-TAG-AATTCTTATGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAACCAGTAATTCAAATGTTTGGTTGAATGG
50951003 AATG
1 AATG
50951007 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 25 0.56
45 2 0.04
46 18 0.40
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAACCAGTAATTCAAATGTTTGGTTGAATGG
Found at i:50951109 original size:25 final size:26
Alignment explanation
Indices: 50951077--50951127 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
50951067 TTTGGTAGAT
*
50951077 GATTATTGTT-ATTAAATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
*
50951102 GATTATTGTTAAATATATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
50951128 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (26 bp):
GATTATTGTTAAATAAATTTTAATAA
Found at i:50951217 original size:12 final size:12
Alignment explanation
Indices: 50951191--50951289 Score: 84
Period size: 12 Copynumber: 8.4 Consensus size: 12
50951181 TTTAATAAAA
50951191 TAATATATATT-T
1 TAATA-ATATTAT
*
50951203 TAATAACATTAT
1 TAATAATATTAT
50951215 TAAT-ATAATTAT
1 TAATAAT-ATTAT
50951227 TAATAATATTTAT
1 TAATAATA-TTAT
* *
50951240 TAATAATTTTAA
1 TAATAATATTAT
*
50951252 T-ATAAAATTAT
1 TAATAATATTAT
50951263 TAATAATA-T-T
1 TAATAATATTAT
50951273 TAATAATAATT-T
1 TAATAAT-ATTAT
50951285 TAATA
1 TAATA
50951290 TAAAATTATT
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
10 8 0.11
11 15 0.21
12 36 0.50
13 13 0.18
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATAATATTAT
Found at i:50951229 original size:24 final size:22
Alignment explanation
Indices: 50951167--50951292 Score: 72
Period size: 23 Copynumber: 5.6 Consensus size: 22
50951157 TAACATAATT
*
50951167 ATTATTAA-ATACAATTTAATAA
1 ATTATTAATATA-ATTTTAATAA
50951189 A--A-TAATATATATTTTAATAA
1 ATTATTAATATA-ATTTTAATAA
50951209 CATTATTAATATAATTATTAATAA
1 -ATTATTAATATAATT-TTAATAA
50951233 TATTTATT-A-ATAATTTTAATATAAA
1 -A-TTATTAATATAATTTT-A-AT-AA
50951258 ATTATT-A-ATAATATTTAATAATA
1 ATTATTAATATAAT-TTTAAT-A-A
50951281 ATT-TTAATATAA
1 ATTATTAATATAA
50951293 AATTATTATT
Statistics
Matches: 87, Mismatches: 3, Indels: 26
0.75 0.03 0.22
Matches are distributed among these distances:
19 3 0.03
20 13 0.15
21 1 0.01
22 9 0.10
23 28 0.32
24 26 0.30
25 7 0.08
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
ATTATTAATATAATTTTAATAA
Found at i:50951261 original size:36 final size:36
Alignment explanation
Indices: 50951221--50951300 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
50951211 TTATTAATAT
*
50951221 AATTATTAATAATATTTATTAATAATTTTAATATAA
1 AATTATTAATAATATTTAATAATAATTTTAATATAA
50951257 AATTATTAATAATATTTAATAATAATTTTAATATAA
1 AATTATTAATAATATTTAATAATAATTTTAATATAA
50951293 AATTATTA
1 AATTATTA
50951301 TTAAGAACAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (36 bp):
AATTATTAATAATATTTAATAATAATTTTAATATAA
Found at i:50951296 original size:13 final size:13
Alignment explanation
Indices: 50951244--50951296 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 13
50951234 ATTTATTAAT
50951244 AATTTTAATATAA
1 AATTTTAATATAA
50951257 AATTATT-A-ATAA
1 AATT-TTAATATAA
* *
50951269 TA-TTTAATA-AT
1 AATTTTAATATAA
50951280 AATTTTAATATAA
1 AATTTTAATATAA
50951293 AATT
1 AATT
50951297 ATTATTAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
10 2 0.06
11 4 0.13
12 13 0.42
13 10 0.32
14 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTTTAATATAA
Found at i:50951463 original size:14 final size:14
Alignment explanation
Indices: 50951427--50951467 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
50951417 ATTATTAAAT
*
50951427 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
50951440 -TTATTAAAAATAA
1 TTTAATAAAAATAA
50951453 TTTAATAAAAATAA
1 TTTAATAAAAATAA
50951467 T
1 T
50951468 AAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:50951556 original size:58 final size:58
Alignment explanation
Indices: 50951423--50951558 Score: 184
Period size: 58 Copynumber: 2.3 Consensus size: 58
50951413 TATTATTATT
* * *
50951423 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATC
1 AAATTTTAATATAATTATTACTAAAAATAATTTAATAAAAATAATAAATAATTTAATA
* * * * *
50951481 ATATTTTAACATGATTATTACTAAATATAATTTAAT-AAAATAATATATAATTTAATA
1 AAATTTTAATATAATTATTACTAAAAATAATTTAATAAAAATAATAAATAATTTAATA
50951538 AAATTCTTAATATAATTATTA
1 AAATT-TTAATATAATTATTA
50951559 TTATATGAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
57 23 0.35
58 43 0.65
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.43
Consensus pattern (58 bp):
AAATTTTAATATAATTATTACTAAAAATAATTTAATAAAAATAATAAATAATTTAATA
Found at i:50951754 original size:62 final size:62
Alignment explanation
Indices: 50951678--50951803 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
50951668 AAATAATTTG
50951678 ATTATTCTACAATAAAAAGTAAAATATAAGAAGTAATAAATAACTTGAGAATCATATTTCAC
1 ATTATTCTACAATAAAAAGTAAAATATAAGAAGTAATAAATAACTTGAGAATCATATTTCAC
50951740 ATTATTCTACAATAAAAAGTAAAATATAAGAAGTAATAAATAACTTGAGAATCATATTTCAC
1 ATTATTCTACAATAAAAAGTAAAATATAAGAAGTAATAAATAACTTGAGAATCATATTTCAC
50951802 AT
1 AT
50951804 CCAAACATAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.31
Consensus pattern (62 bp):
ATTATTCTACAATAAAAAGTAAAATATAAGAAGTAATAAATAACTTGAGAATCATATTTCAC
Found at i:50959880 original size:16 final size:16
Alignment explanation
Indices: 50959849--50959878 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50959839 TTGATATCTC
50959849 TTTTTTTAAATATTTA
1 TTTTTTTAAATATTTA
50959865 TTTTTTT-AATATTT
1 TTTTTTTAAATATTT
50959879 TACTATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTTTAAATATTTA
Found at i:50969890 original size:27 final size:28
Alignment explanation
Indices: 50969859--50969919 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
50969849 TAAGATGATT
50969859 ATATAAAAATTT-TC-AATATATAAAAGA
1 ATATAAAAATTTATCAAATAT-TAAAAGA
* * *
50969886 ATATATAAATTTATTAAATATTAAAATA
1 ATATAAAAATTTATCAAATATTAAAAGA
50969914 ATATAA
1 ATATAA
50969920 TATAAATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 11 0.39
28 12 0.43
29 5 0.18
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (28 bp):
ATATAAAAATTTATCAAATATTAAAAGA
Found at i:50977804 original size:43 final size:42
Alignment explanation
Indices: 50977727--50977887 Score: 198
Period size: 43 Copynumber: 3.8 Consensus size: 42
50977717 TACCATACCA
* * *
50977727 ATGCCATATCCCAGATATGGCCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
50977769 ATGTCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
50977812 ACGCCATATCCCAAATAAGGTCTTACACGAAATCTCATA-CG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
** *
50977853 ATGCCATATTTCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCT
50977888 TGTAACCCTA
Statistics
Matches: 100, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
41 31 0.31
42 34 0.34
43 35 0.35
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:50980407 original size:13 final size:15
Alignment explanation
Indices: 50980379--50980408 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50980369 TAATGTATTT
50980379 AATTTATATATAAAA
1 AATTTATATATAAAA
50980394 AATTTATAT-TAAAA
1 AATTTATATATAAAA
50980408 A
1 A
50980409 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTTATATATAAAA
Found at i:50980414 original size:63 final size:63
Alignment explanation
Indices: 50980316--50980521 Score: 330
Period size: 61 Copynumber: 3.3 Consensus size: 63
50980306 TGAACTTATG
*
50980316 TAATTTATATA-AAAAAATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
1 TAATTTATATATAAAAAATTTATATTAAAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
50980378 TAATTTATATATAAAAAATTTATATTAAAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
1 TAATTTATATATAAAAAATTTATATTAAAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
* * *
50980441 T-ACTT-TATATAAAAAATTTATATTAAAAAGTTTATTCCAATTTTTAATTTTGTAATGTATT
1 TAATTTATATATAAAAAATTTATATTAAAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
* *
50980502 TAATTTAAAT-TACAAAATTT
1 TAATTTATATATAAAAAATTT
50980522 GTTCCAATTA
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
61 55 0.41
62 26 0.19
63 53 0.40
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (63 bp):
TAATTTATATATAAAAAATTTATATTAAAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
Found at i:50980527 original size:48 final size:49
Alignment explanation
Indices: 50980455--50980558 Score: 149
Period size: 50 Copynumber: 2.1 Consensus size: 49
50980445 TTATATAAAA
* *
50980455 AATTTATATTAAAAAGTTTATTCCAATT-TTTAATTTTGTAATGTATTT
1 AATTTAAATTAAAAAGTTTATTCCAATTAATTAATTTTGTAATGTATTT
*
50980503 AATTTAAATTACAAAA-TTTGTTCCAATTAGATTAATTTTGTAATGTATTT
1 AATTTAAATTA-AAAAGTTTATTCCAATTA-ATTAATTTTGTAATGTATTT
50980553 AATTTA
1 AATTTA
50980559 TATAACAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
48 21 0.42
49 4 0.08
50 25 0.50
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.51
Consensus pattern (49 bp):
AATTTAAATTAAAAAGTTTATTCCAATTAATTAATTTTGTAATGTATTT
Found at i:50984959 original size:52 final size:50
Alignment explanation
Indices: 50984886--50985021 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 50
50984876 AACATGTATA
* * *
50984886 CATCTATAATGAACTTGGACCAACTCAACGAGCTCGGATGTCACATGCATCG
1 CATCCATAATAAACTCGGACCAACTCAACGAGCTCGGATGT-ACATGC-TCG
* * *
50984938 CATCCATAATAAACTCGGACCAACTCAAC--G---GGCT-TAGATGCTTG
1 CATCCATAATAAACTCGGACCAACTCAACGAGCTCGGATGTACATGCTCG
* *
50984982 CATCCATAATTAACTCGGACCAACTCAATGAGCTCGGATG
1 CATCCATAATAAACTCGGACCAACTCAACGAGCTCGGATG
50985022 CTTCACATAT
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
44 29 0.42
45 5 0.07
46 2 0.03
47 3 0.04
49 3 0.04
50 1 0.01
52 26 0.38
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (50 bp):
CATCCATAATAAACTCGGACCAACTCAACGAGCTCGGATGTACATGCTCG
Found at i:50985113 original size:45 final size:44
Alignment explanation
Indices: 50984993--50985114 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 44
50984983 ATCCATAATT
* * *
50984993 AACTCGGACCAACTCAATGAGCTCGGA-TGCTTCACATATATCACG
1 AACTCGGACCAACTCAACGAGTTC-GATTTC-TCACATATATCACG
* * * *
50985038 AACTTGGACCACCTCAACAAGTTTTGATTTCTCACATATATCACG
1 AACTCGGACCAACTCAACGAG-TTCGATTTCTCACATATATCACG
50985083 AACTCGGACCAACTCAACGAGTTCGAATTTCT
1 AACTCGGACCAACTCAACGAGTTCG-ATTTCT
50985115 AAATTCCTAG
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
44 3 0.05
45 57 0.90
46 3 0.05
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (44 bp):
AACTCGGACCAACTCAACGAGTTCGATTTCTCACATATATCACG
Found at i:50986050 original size:28 final size:28
Alignment explanation
Indices: 50986010--50986070 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
50986000 TGGAAGCTTG
*
50986010 AACATAAACCCTACCCATGGCTTCCTCT
1 AACATAAACCCTACCCATAGCTTCCTCT
**
50986038 AACATAAACCCTACCTGTAGCTTCCTCT
1 AACATAAACCCTACCCATAGCTTCCTCT
50986066 AACAT
1 AACAT
50986071 TCGGCTGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.36, G:0.07, T:0.26
Consensus pattern (28 bp):
AACATAAACCCTACCCATAGCTTCCTCT
Found at i:50996881 original size:17 final size:17
Alignment explanation
Indices: 50996859--50996899 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
50996849 CCTCCTATCT
* **
50996859 TTTTATTTTTATTTTTA
1 TTTTATTTTCATTTCAA
50996876 TTTTATTTTCATTTCAA
1 TTTTATTTTCATTTCAA
50996893 TTTTATT
1 TTTTATT
50996900 ATTTTCTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTCATTTCAA
Found at i:50999799 original size:13 final size:13
Alignment explanation
Indices: 50999781--50999808 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50999771 TTAGTTTAAC
50999781 TAGTTAATTAGTT
1 TAGTTAATTAGTT
50999794 TAGTTAATTAGTT
1 TAGTTAATTAGTT
50999807 TA
1 TA
50999809 ATAAACAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (13 bp):
TAGTTAATTAGTT
Found at i:51003851 original size:16 final size:15
Alignment explanation
Indices: 51003830--51003861 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
51003820 TTAACGGAAG
51003830 CTATATCGGTATCGCA
1 CTATATCGGTAT-GCA
51003846 CTATATCGGTATGCA
1 CTATATCGGTATGCA
51003861 C
1 C
51003862 ACTTAGTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (15 bp):
CTATATCGGTATGCA
Found at i:51006056 original size:30 final size:30
Alignment explanation
Indices: 51006022--51006082 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
51006012 TTCCCGAGCC
51006022 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
51006052 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
51006082 T
1 T
51006083 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:51015224 original size:39 final size:39
Alignment explanation
Indices: 51015181--51015263 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
51015171 ATCATTTAAC
*
51015181 ATCATAAAACTCATGAATTCATCAATGGCATCTCATCAA
1 ATCATAAAACTCATGAATTCATCAATGACATCTCATCAA
* *
51015220 ATCATAAAACTCTTGAATTCATCAATGACGTCTCATCAA
1 ATCATAAAACTCATGAATTCATCAATGACATCTCATCAA
51015259 ATCAT
1 ATCAT
51015264 CAACAATTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (39 bp):
ATCATAAAACTCATGAATTCATCAATGACATCTCATCAA
Found at i:51020514 original size:22 final size:22
Alignment explanation
Indices: 51020480--51020521 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51020470 TTTACCTACA
51020480 TAAAAAACAAAAAAAAATATTT
1 TAAAAAACAAAAAAAAATATTT
* * *
51020502 TAAAATACTAAAAATAATAT
1 TAAAAAACAAAAAAAAATAT
51020522 GTCAGTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (22 bp):
TAAAAAACAAAAAAAAATATTT
Found at i:51020865 original size:17 final size:17
Alignment explanation
Indices: 51020843--51020875 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51020833 AAAACATAAA
51020843 ATAAAAT-TTAAGAAAAC
1 ATAAAATCTTAA-AAAAC
51020860 ATAAAATCTTAAAAAA
1 ATAAAATCTTAAAAAA
51020876 TTAAAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.67, C:0.06, G:0.03, T:0.24
Consensus pattern (17 bp):
ATAAAATCTTAAAAAAC
Found at i:51021286 original size:23 final size:23
Alignment explanation
Indices: 51021260--51021305 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
51021250 TAACATTAAT
51021260 CCATTAATTTATAACAAAAATAA
1 CCATTAATTTATAACAAAAATAA
*
51021283 CCATTAATTTTTAACAAAAATAA
1 CCATTAATTTATAACAAAAATAA
51021306 TTAACCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (23 bp):
CCATTAATTTATAACAAAAATAA
Found at i:51022124 original size:33 final size:33
Alignment explanation
Indices: 51022087--51022157 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
51022077 GAAGTCCAAG
*
51022087 GAGCTTGCTTTTGAAGCCTCCAAGAAA-GCCGAT
1 GAGCTTGCTCTTGAAGCCTCCAA-AAAGGCCGAT
*
51022120 GAGCTTGCTCTTGAAGCTTCCAAAAAGGCCGAT
1 GAGCTTGCTCTTGAAGCCTCCAAAAAGGCCGAT
51022153 GAGCT
1 GAGCT
51022158 CAGAGTCGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 32 0.91
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (33 bp):
GAGCTTGCTCTTGAAGCCTCCAAAAAGGCCGAT
Found at i:51023602 original size:6 final size:6
Alignment explanation
Indices: 51023591--51023620 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
51023581 ATTATTCAGT
51023591 TGATGG TGATGG TGATGG TGATGG TGATGG
1 TGATGG TGATGG TGATGG TGATGG TGATGG
51023621 GAGTTTTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
TGATGG
Found at i:51025963 original size:36 final size:36
Alignment explanation
Indices: 51025916--51025993 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
51025906 CCACACACTC
**
51025916 GTGTGGGTCACATGGCCGTGTGGAATGGTTCAGCCG
1 GTGTGGGTCACATGGCCACGTGGAATGGTTCAGCCG
* *
51025952 GTGTGGGTCACATGGCCACGTGGAATGGTTTAGCCT
1 GTGTGGGTCACATGGCCACGTGGAATGGTTCAGCCG
51025988 GTGTGG
1 GTGTGG
51025994 CTCCTGCAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.14, C:0.18, G:0.41, T:0.27
Consensus pattern (36 bp):
GTGTGGGTCACATGGCCACGTGGAATGGTTCAGCCG
Found at i:51029454 original size:48 final size:48
Alignment explanation
Indices: 51029399--51029519 Score: 170
Period size: 48 Copynumber: 2.5 Consensus size: 48
51029389 ATATATTTGT
* *
51029399 GCCGATGCCATGTCTCAAACATGGTCTTATACTAGCAAACATATCAAC
1 GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCAAACATATCAAC
* * * * *
51029447 GCTGATGCCATGTCTCAGACATGGACTTACACTGGCACACATATCAAT
1 GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCAAACATATCAAC
*
51029495 GCCGATGCCATGTCCCAGACATGGT
1 GCCGATGCCATGTCTCAGACATGGT
51029520 TTTTGTGACA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (48 bp):
GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCAAACATATCAAC
Found at i:51031229 original size:41 final size:41
Alignment explanation
Indices: 51031172--51031321 Score: 185
Period size: 41 Copynumber: 3.7 Consensus size: 41
51031162 TCGGGGTTTA
51031172 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
51031213 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCTAGTGTTAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
51031254 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
**
51031294 AATCCGAGCTTGGTCTTTAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
51031322 TGAGTCAGCG
Statistics
Matches: 88, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 30 0.34
41 58 0.66
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:51039459 original size:41 final size:41
Alignment explanation
Indices: 51039402--51039551 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
51039392 TCGGGGTTTA
51039402 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
51039443 AATCCGAGCTTGGTCTCGAAAGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
51039484 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
51039524 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
51039552 TGAGTCAGCA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:51043534 original size:41 final size:38
Alignment explanation
Indices: 51043488--51043708 Score: 192
Period size: 38 Copynumber: 5.7 Consensus size: 38
51043478 ACAGCGGCAT
* *
51043488 AAAGCCTGCTAGGCATAAAGCCTGATATAATACACCAGCAC
1 AAAGCCTGCTAGGCACAAAGCCCGA-AT-AT-CACCAGCAC
* * * *
51043529 GAAGCCTACTAGGCACAGAGCCCGAATATCACCGGCAC
1 AAAGCCTGCTAGGCACAAAGCCCGAATATCACCAGCAC
** * **
51043567 AAAGCCTGCTAGGCACATTGTCTAAATATCACCAGCAC
1 AAAGCCTGCTAGGCACAAAGCCCGAATATCACCAGCAC
* * * * * *
51043605 AAAGCCTGCTAGGTACAGAGCCCAAATATTACGAGCTC
1 AAAGCCTGCTAGGCACAAAGCCCGAATATCACCAGCAC
* * * * * *
51043643 AAAACCTTCTAGGCA-ATAAGCCTGATTATCACCGGCCC
1 AAAGCCTGCTAGGCACA-AAGCCCGAATATCACCAGCAC
51043681 AAAGCCTGCTAGGCACAAAGCCCGAATA
1 AAAGCCTGCTAGGCACAAAGCCCGAATA
51043709 ATGTTACGTT
Statistics
Matches: 141, Mismatches: 37, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
37 1 0.01
38 115 0.82
39 3 0.02
40 2 0.01
41 20 0.14
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.17
Consensus pattern (38 bp):
AAAGCCTGCTAGGCACAAAGCCCGAATATCACCAGCAC
Found at i:51043617 original size:76 final size:76
Alignment explanation
Indices: 51043492--51043708 Score: 215
Period size: 76 Copynumber: 2.8 Consensus size: 76
51043482 CGGCATAAAG
* * *
51043492 CCTGCTAGGC-ATAAAGCCTGATATAATACACCAGCACGAAGCCTACTAGGCACAGAGCCCGAAT
1 CCTGCTAGGCAAT-AAGCCT-AAAT-AT-CACCAGCACAAAGCCTGCTAGGCACAGAGCCCGAAT
*
51043556 ATCACCG-GCACAAAG
62 ATCA-CGAGCACAAAA
* * * * *
51043571 CCTGCTAGGCACAT-TGTCTAAATATCACCAGCACAAAGCCTGCTAGGTACAGAGCCCAAATATT
1 CCTGCTAGGCA-ATAAGCCTAAATATCACCAGCACAAAGCCTGCTAGGCACAGAGCCCGAATATC
*
51043635 ACGAGCTCAAAA
65 ACGAGCACAAAA
* * * * * *
51043647 CCTTCTAGGCAATAAGCCTGATTATCACCGGCCCAAAGCCTGCTAGGCACAAAGCCCGAATA
1 CCTGCTAGGCAATAAGCCTAAATATCACCAGCACAAAGCCTGCTAGGCACAGAGCCCGAATA
51043709 ATGTTACGTT
Statistics
Matches: 114, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
75 4 0.04
76 90 0.79
77 2 0.02
78 3 0.03
79 13 0.11
81 2 0.02
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (76 bp):
CCTGCTAGGCAATAAGCCTAAATATCACCAGCACAAAGCCTGCTAGGCACAGAGCCCGAATATCA
CGAGCACAAAA
Found at i:51045298 original size:36 final size:35
Alignment explanation
Indices: 51045254--51045328 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 35
51045244 TGTTATTATC
51045254 ATAAATTTGCTTGAAAACCAAATCTCCACCACTAT
1 ATAAATTTGCTTGAAAACCAAATCTCCACCACTAT
*
51045289 ATAAGATTTGCTTGAAAACGAAATCTCCACCACTAT
1 ATAA-ATTTGCTTGAAAACCAAATCTCCACCACTAT
51045325 ATAA
1 ATAA
51045329 TGAGATGACA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 4 0.11
36 34 0.89
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (35 bp):
ATAAATTTGCTTGAAAACCAAATCTCCACCACTAT
Found at i:51046603 original size:15 final size:15
Alignment explanation
Indices: 51046583--51046612 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51046573 TATAAGTCCG
*
51046583 ACAAATAGAATAAAA
1 ACAAATAAAATAAAA
51046598 ACAAATAAAATAAAA
1 ACAAATAAAATAAAA
51046613 GATAGTTCGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (15 bp):
ACAAATAAAATAAAA
Found at i:51047173 original size:3 final size:3
Alignment explanation
Indices: 51047165--51047192 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
51047155 AAATGGAAAT
51047165 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
51047193 AACACTCGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:51072605 original size:16 final size:16
Alignment explanation
Indices: 51072573--51072602 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51072563 AGAAACTTAA
51072573 TAATTCAAATATAAAT
1 TAATTCAAATATAAAT
51072589 TAATTC-AATATAAA
1 TAATTCAAATATAAA
51072603 ATTCAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATTCAAATATAAAT
Found at i:51072737 original size:67 final size:68
Alignment explanation
Indices: 51072625--51072752 Score: 161
Period size: 67 Copynumber: 1.9 Consensus size: 68
51072615 AGTTATTAAA
*
51072625 AAATTTATTTAACAAAAGCATTTTAATAAAATCATAATTCCTATTTATAAGCATGATAAATGATA
1 AAATTTATTTAACAAAAGCATTTTAATAAAATCATAATTCCTATTTATAAACATGATAAATGATA
51072690 ATT
66 ATT
* * * * ** *
51072693 AAATTTATTTAACCAAA-TATTTTAGTAAAATTA-AATCTTTTATTTATAAATATGATAAAT
1 AAATTTATTTAACAAAAGCATTTTAATAAAATCATAAT-TCCTATTTATAAACATGATAAAT
51072753 TTTATAAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
66 3 0.06
67 32 0.63
68 16 0.31
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (68 bp):
AAATTTATTTAACAAAAGCATTTTAATAAAATCATAATTCCTATTTATAAACATGATAAATGATA
ATT
Found at i:51072770 original size:18 final size:19
Alignment explanation
Indices: 51072733--51072778 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
51072723 TTAAATCTTT
*
51072733 TATTTATAAATATGATAAA
1 TATTTATAAATATGAAAAA
51072752 T-TTTATAAATAAT-AAAAA
1 TATTTATAAAT-ATGAAAAA
51072770 TATTTATAA
1 TATTTATAA
51072779 TGGTAGATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TATTTATAAATATGAAAAA
Found at i:51078793 original size:47 final size:46
Alignment explanation
Indices: 51078739--51078869 Score: 176
Period size: 46 Copynumber: 2.8 Consensus size: 46
51078729 GGAAATTGAG
*
51078739 ATCCGAACTCGTTGAGTTGCGTTCTGAGTTCACTTATGGATG-CAAGC
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGTCAA-C
* *
51078786 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAAC
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGTCAAC
* *
51078832 ACCCGAGCTCGTTGAGTTGCGTTCCGAGGTT-ATTATGG
1 ATCCGAACTCGTTGAGTTGCGTTCCGA-GTTCATTATGG
51078870 GTGAAATTAT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
46 41 0.54
47 35 0.46
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGTCAAC
Found at i:51083688 original size:30 final size:29
Alignment explanation
Indices: 51083654--51083712 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
51083644 ACATTTCGAG
*
51083654 TACACACATGGTATCGATTTCGATGCAAAA
1 TACACACATGGCATCGATTT-GATGCAAAA
* *
51083684 TACACATATGGCATCGATTTGATTCAAAA
1 TACACACATGGCATCGATTTGATGCAAAA
51083713 CCACTCCCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (29 bp):
TACACACATGGCATCGATTTGATGCAAAA
Found at i:51089758 original size:30 final size:30
Alignment explanation
Indices: 51089724--51089783 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
51089714 TTATTTTTAA
*
51089724 TTAAATTTGACCCTAAATTTTTTAAAAAAG
1 TTAAATTTGACCATAAATTTTTTAAAAAAG
*
51089754 TTAAATTTGACCATCAATTTTTTAAAAAAG
1 TTAAATTTGACCATAAATTTTTTAAAAAAG
51089784 AGTTTGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (30 bp):
TTAAATTTGACCATAAATTTTTTAAAAAAG
Found at i:51091546 original size:14 final size:15
Alignment explanation
Indices: 51091494--51091547 Score: 69
Period size: 14 Copynumber: 3.7 Consensus size: 15
51091484 AGTTTTGACA
51091494 ATTTTATTTAAGTTT
1 ATTTTATTTAAGTTT
51091509 AATTTT-TTTAA-TTT
1 -ATTTTATTTAAGTTT
*
51091523 TTTTTATTTAAGTTT
1 ATTTTATTTAAGTTT
51091538 ATTTT-TTTAA
1 ATTTTATTTAA
51091548 TCAATTTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 4 0.12
14 13 0.38
15 12 0.35
16 5 0.15
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (15 bp):
ATTTTATTTAAGTTT
Found at i:51104326 original size:40 final size:40
Alignment explanation
Indices: 51104271--51104452 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
51104261 TATTCGAATG
* * *
51104271 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
51104311 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51104351 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51104391 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
51104431 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
51104453 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 112 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:51122799 original size:68 final size:68
Alignment explanation
Indices: 51122726--51122867 Score: 158
Period size: 68 Copynumber: 2.1 Consensus size: 68
51122716 TTTCTATGGT
** ** * **
51122726 TGAAGGCTTGGTGGTAGAGAGATGCAAACAGCAGTGGTGCACAATGAAAAGAGAGCGGTGAATGG
1 TGAAGGCTTGGCAGTAGAGAGACACAAACAGCAGTGATGCACAATGAAAAGAGAGCGACGAATGG
51122791 TGG
66 TGG
* * ** * * *
51122794 TGAAGGCTTGGCAGTGGAGGGACACAAACAGTGGTGATGCACAGTGAAAAGGGAGCGACGAATTG
1 TGAAGGCTTGGCAGTAGAGAGACACAAACAGCAGTGATGCACAATGAAAAGAGAGCGACGAATGG
51122859 TGG
66 TGG
51122862 TGAAGG
1 TGAAGG
51122868 TTTGACAATG
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.32, C:0.11, G:0.40, T:0.17
Consensus pattern (68 bp):
TGAAGGCTTGGCAGTAGAGAGACACAAACAGCAGTGATGCACAATGAAAAGAGAGCGACGAATGG
TGG
Found at i:51123087 original size:26 final size:27
Alignment explanation
Indices: 51123049--51123099 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
51123039 GGTGAAGAAG
51123049 AAAAAGAAGAGGGAAAAAAAAGAAAAT
1 AAAAAGAAGAGGGAAAAAAAAGAAAAT
*
51123076 AAAAAGAA-AGGGAAAGAAAAGAAA
1 AAAAAGAAGAGGGAAAAAAAAGAAA
51123100 TAAGGGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (27 bp):
AAAAAGAAGAGGGAAAAAAAAGAAAAT
Found at i:51128184 original size:19 final size:18
Alignment explanation
Indices: 51128144--51128189 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
51128134 AATGGCAAAT
* *
51128144 ATGAGAAATGATTATGAG
1 ATGAGAAATGAATATGAA
51128162 ATGAGAAATGAAATATGAA
1 ATGAGAAATG-AATATGAA
*
51128181 ATGATAAAT
1 ATGAGAAAT
51128190 TGAGATGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (18 bp):
ATGAGAAATGAATATGAA
Found at i:51128467 original size:43 final size:43
Alignment explanation
Indices: 51128404--51128649 Score: 314
Period size: 43 Copynumber: 5.7 Consensus size: 43
51128394 TGAAAAACCT
* * * * *
51128404 CCGCTATAGAACGTGACCTTTAGTGGCGCTTTTCTCATAAACG
1 CCGCTATAGAACGTGGCCTTTAGCGGCGCTTGTCCCACAAACG
* * *
51128447 TCGCTATAGAACGTGGCCTTTAGCGGTGCTTGTCCCATAAACG
1 CCGCTATAGAACGTGGCCTTTAGCGGCGCTTGTCCCACAAACG
** *
51128490 TTGCTATAGAACGTGGCCTTTAGAGGCGCTTGTCCCACAAACG
1 CCGCTATAGAACGTGGCCTTTAGCGGCGCTTGTCCCACAAACG
*
51128533 CCGCTATAGAACGTGGCCTTTAGCGGCACTTGTCCCACAAACG
1 CCGCTATAGAACGTGGCCTTTAGCGGCGCTTGTCCCACAAACG
* * *
51128576 CCGCTATAGAAAGTGGCCTTTAGCAGTGCTT-TCCCCACAAACG
1 CCGCTATAGAACGTGGCCTTTAGCGGCGCTTGT-CCCACAAACG
** *
51128619 CTACTATAGAACGTGGCCTTTAGCGACGCTT
1 CCGCTATAGAACGTGGCCTTTAGCGGCGCTT
51128650 TCACCAAAAA
Statistics
Matches: 178, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 1 0.01
43 177 0.99
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (43 bp):
CCGCTATAGAACGTGGCCTTTAGCGGCGCTTGTCCCACAAACG
Found at i:51128634 original size:129 final size:129
Alignment explanation
Indices: 51128404--51128641 Score: 352
Period size: 129 Copynumber: 1.8 Consensus size: 129
51128394 TGAAAAACCT
* * * * * * *
51128404 CCGCTATAGAACGTGACCTTTAGTGGCGCTTTTCTCATAAACGTCGCTATAGAACGTGGCCTTTA
1 CCGCTATAGAACGTGACCTTTAGCGGCACTTGTCCCACAAACGCCGCTATAGAAAGTGGCCTTTA
* * * *
51128469 GCGGTGCTTGTCCCATAAACGTTGCTATAGAACGTGGCCTTTAGAGGCGCTTGTCCCACAAACG
66 GCAGTGCTTGTCCCACAAACGCTACTATAGAACGTGGCCTTTAGAGGCGCTTGTCCCACAAACG
*
51128533 CCGCTATAGAACGTGGCCTTTAGCGGCACTTGTCCCACAAACGCCGCTATAGAAAGTGGCCTTTA
1 CCGCTATAGAACGTGACCTTTAGCGGCACTTGTCCCACAAACGCCGCTATAGAAAGTGGCCTTTA
51128598 GCAGTGCTT-TCCCCACAAACGCTACTATAGAACGTGGCCTTTAG
66 GCAGTGCTTGT-CCCACAAACGCTACTATAGAACGTGGCCTTTAG
51128642 CGACGCTTTC
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
128 1 0.01
129 95 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (129 bp):
CCGCTATAGAACGTGACCTTTAGCGGCACTTGTCCCACAAACGCCGCTATAGAAAGTGGCCTTTA
GCAGTGCTTGTCCCACAAACGCTACTATAGAACGTGGCCTTTAGAGGCGCTTGTCCCACAAACG
Found at i:51128937 original size:68 final size:68
Alignment explanation
Indices: 51128824--51128955 Score: 246
Period size: 68 Copynumber: 1.9 Consensus size: 68
51128814 ATGTTAAAGG
51128824 TTATAATGTTAAAATATTTTTACATTAAGAAAACAAACGTCTAGGATGGCAGATTCTGCGGCTGC
1 TTATAATGTTAAAATATTTTTACATTAAGAAAACAAACGTCTAGGATGGCAGATTCTGCGGCTGC
51128889 TGA
66 TGA
* *
51128892 TTATAATGTTAAAATATTTTTACATTAAGAAAACAAATGTTTAGGATGGCAGATTCTGCGGCTG
1 TTATAATGTTAAAATATTTTTACATTAAGAAAACAAACGTCTAGGATGGCAGATTCTGCGGCTG
51128956 TTGAAACTCT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (68 bp):
TTATAATGTTAAAATATTTTTACATTAAGAAAACAAACGTCTAGGATGGCAGATTCTGCGGCTGC
TGA
Found at i:51134655 original size:9 final size:9
Alignment explanation
Indices: 51134643--51134714 Score: 65
Period size: 9 Copynumber: 8.0 Consensus size: 9
51134633 GGGTGTAAAC
51134643 TATGTAAGT
1 TATGTAAGT
51134652 TATGTAAGT
1 TATGTAAGT
*
51134661 TATGCAAGT
1 TATGTAAGT
* *
51134670 TATGATATGA
1 TATG-TAAGT
* *
51134680 TATAT-ATT
1 TATGTAAGT
*
51134688 TATGTACGT
1 TATGTAAGT
*
51134697 TATGTAAAT
1 TATGTAAGT
51134706 TATGTAAGT
1 TATGTAAGT
51134715 CCATAGATAT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
8 4 0.09
9 38 0.81
10 5 0.11
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (9 bp):
TATGTAAGT
Found at i:51134709 original size:45 final size:46
Alignment explanation
Indices: 51134643--51134754 Score: 158
Period size: 45 Copynumber: 2.5 Consensus size: 46
51134633 GGGTGTAAAC
*
51134643 TATGTAAGTTATGTAAGTTATGCAAGT-TAT-GATATGATATATATT
1 TATGT-AGTTATGTAAGTTATGCAAGTCCATAGATATGATATATATT
* *
51134688 TATGTACGTTATGTAAATTATGTAAGTCCATAGATATGATATATATT
1 TATGTA-GTTATGTAAGTTATGCAAGTCCATAGATATGATATATATT
51134735 TATGTA-TTATGTAAGTTATG
1 TATGTAGTTATGTAAGTTATG
51134755 ATCTAATGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
44 1 0.02
45 36 0.60
46 2 0.03
47 21 0.35
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.45
Consensus pattern (46 bp):
TATGTAGTTATGTAAGTTATGCAAGTCCATAGATATGATATATATT
Found at i:51135461 original size:41 final size:41
Alignment explanation
Indices: 51135415--51135515 Score: 166
Period size: 41 Copynumber: 2.5 Consensus size: 41
51135405 CCATAGTAGA
* * *
51135415 GAAAATAATAAAATAAATGATAAATATAATAGTATAATAGC
1 GAAAATAATAAAATAAATGACAAATATAAGAGTACAATAGC
*
51135456 GAAAATAATAAAATAAATGACAAATATAAGAGTACAATAGT
1 GAAAATAATAAAATAAATGACAAATATAAGAGTACAATAGC
51135497 GAAAATAATAAAATAAATG
1 GAAAATAATAAAATAAATG
51135516 TAAGAATTAG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.62, C:0.03, G:0.11, T:0.24
Consensus pattern (41 bp):
GAAAATAATAAAATAAATGACAAATATAAGAGTACAATAGC
Found at i:51137654 original size:41 final size:41
Alignment explanation
Indices: 51137605--51137706 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
51137595 AAAGAAACAT
* *
51137605 CACTATTGCTCAACCTTTTGCGGCATTTCGACCAAAAACGC
1 CACTATTGCTCAACCTTTTGCAGCATTTCGACAAAAAACGC
* * *
51137646 CACTATTGCTCAA-CTTTTAGCAGCGTTTTGATAAAAAACGC
1 CACTATTGCTCAACCTTTT-GCAGCATTTCGACAAAAAACGC
*
51137687 CACTATTGCTCAACTTTTTG
1 CACTATTGCTCAACCTTTTG
51137707 TGGCGCTTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 5 0.09
41 44 0.83
42 4 0.08
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (41 bp):
CACTATTGCTCAACCTTTTGCAGCATTTCGACAAAAAACGC
Found at i:51143311 original size:43 final size:43
Alignment explanation
Indices: 51143256--51143527 Score: 289
Period size: 43 Copynumber: 6.3 Consensus size: 43
51143246 GTTTTTTAAA
* * *
51143256 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGTGCTTTTTT
1 AAAAAACGCCGCTATAGACCAGGACCTTTAGCGGCGCTTTTAT
* * *
51143299 AAAAAACGCCGCTATAGACCAAGAACTTTAACGGCGCTTTTAT
1 AAAAAACGCCGCTATAGACCAGGACCTTTAGCGGCGCTTTTAT
* * * * * *
51143342 AAAAAACGCCGCTATAAACCTGTACTTTTAGCGGTGCTTTTGT
1 AAAAAACGCCGCTATAGACCAGGACCTTTAGCGGCGCTTTTAT
* * *
51143385 AAAAAAACGCCGCTATAGACCTA-TACTTTTAGCGGCACTTTTAT
1 -AAAAAACGCCGCTATAGACC-AGGACCTTTAGCGGCGCTTTTAT
* * *
51143429 AAAAAACGCCACTATAGACCAAGAACTTTAGCGGCGCTTTTAT
1 AAAAAACGCCGCTATAGACCAGGACCTTTAGCGGCGCTTTTAT
* * * * *
51143472 -AAAAACGCCGCTATAGACCTGTACTTTTAGCGACG-TTTTTT
1 AAAAAACGCCGCTATAGACCAGGACCTTTAGCGGCGCTTTTAT
51143513 AAAAAAGCGCCGCTA
1 AAAAAA-CGCCGCTA
51143528 ATTTGCCCAG
Statistics
Matches: 191, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
41 5 0.03
42 34 0.18
43 115 0.60
44 37 0.19
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
AAAAAACGCCGCTATAGACCAGGACCTTTAGCGGCGCTTTTAT
Found at i:51143397 original size:130 final size:128
Alignment explanation
Indices: 51143255--51143528 Score: 397
Period size: 130 Copynumber: 2.1 Consensus size: 128
51143245 CGTTTTTTAA
** * *
51143255 AAAAAAACGCCGCTAAAGACC-AGGACCTTTAGCGGTGCTTTTTTAAAAAACGCCGCTATAGACC
1 AAAAAAACGCCGCTAAAGACCTA-GACCTTTAGCGGCACTTTTATAAAAAACGCCACTATAGACC
**
51143319 AAGAACTTTAACGGCGCTTTTATAAAAAACGCCGCTATAAACCTGTACTTTTAGCGGTGCTTTTG
65 AAGAACTTTAACGGCGCTTTTAT-AAAAACGCCGCTATAAACCTGTACTTTTAGCGACG-TTTTG
51143384 T
128 T
* * *
51143385 AAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCACTTTTATAAAAAACGCCACTATAGACCA
1 AAAAAAACGCCGCTAAAGACCTAGACCTTTAGCGGCACTTTTATAAAAAACGCCACTATAGACCA
* * *
51143450 AGAACTTTAGCGGCGCTTTTATAAAAACGCCGCTATAGACCTGTACTTTTAGCGACGTTTTTT
66 AGAACTTTAACGGCGCTTTTATAAAAACGCCGCTATAAACCTGTACTTTTAGCGACGTTTTGT
*
51143513 AAAAAAGCGCCGCTAA
1 AAAAAAACGCCGCTAA
51143529 TTTGCCCAGT
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
128 19 0.15
129 32 0.25
130 77 0.60
131 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (128 bp):
AAAAAAACGCCGCTAAAGACCTAGACCTTTAGCGGCACTTTTATAAAAAACGCCACTATAGACCA
AGAACTTTAACGGCGCTTTTATAAAAACGCCGCTATAAACCTGTACTTTTAGCGACGTTTTGT
Found at i:51143426 original size:87 final size:85
Alignment explanation
Indices: 51143256--51143527 Score: 311
Period size: 87 Copynumber: 3.2 Consensus size: 85
51143246 GTTTTTTAAA
* * *
51143256 AAAAAACGCCGCTA-AAGACCAGGACCTTTAGCGGTGCTTTTTTAAAAAACGCCGCTATAGACCA
1 AAAAAACGCCGCTATAA-ACCA-GAACTTTAGCGGTGCTTTTTAAAAAAACGCCGCTATAGACCT
* * *
51143320 AGAAC-TTTAACGGCGCTTTTAT
64 A-TACTTTTAGCGGCACTTTTAT
* *
51143342 AAAAAACGCCGCTATAAACCTGTACTTTTAGCGGTGCTTTTGTAAAAAAACGCCGCTATAGACCT
1 AAAAAACGCCGCTATAAACCAGAAC-TTTAGCGGTGCTTTT-TAAAAAAACGCCGCTATAGACCT
51143407 ATACTTTTAGCGGCACTTTTAT
64 ATACTTTTAGCGGCACTTTTAT
* * * * *
51143429 AAAAAACGCCACTATAGACCAAGAACTTTAGCGGCGC-TTTTATAAAAACGCCGCTATAGACCTG
1 AAAAAACGCCGCTATAAACC-AGAACTTTAGCGGTGCTTTTTAAAAAAACGCCGCTATAGACCTA
*
51143493 TACTTTTAGC-G-ACGTTTTTT
65 TACTTTTAGCGGCAC-TTTTAT
51143513 AAAAAAGCGCCGCTA
1 AAAAAA-CGCCGCTA
51143528 ATTTGCCCAG
Statistics
Matches: 162, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
83 2 0.01
84 12 0.07
85 41 0.25
86 37 0.23
87 67 0.41
88 3 0.02
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (85 bp):
AAAAAACGCCGCTATAAACCAGAACTTTAGCGGTGCTTTTTAAAAAAACGCCGCTATAGACCTAT
ACTTTTAGCGGCACTTTTAT
Found at i:51143851 original size:21 final size:21
Alignment explanation
Indices: 51143825--51143872 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
51143815 TCCTGTTCTG
* * *
51143825 CTCCGCCTCCTTTGCTGCTGT
1 CTCCGCCTCCCTCGCTGCTGC
51143846 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
51143867 CTCCGC
1 CTCCGC
51143873 TCTAAGTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.00, C:0.52, G:0.19, T:0.29
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:51144460 original size:18 final size:18
Alignment explanation
Indices: 51144428--51144465 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
51144418 TACAATATAG
51144428 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
51144447 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
51144464 TA
1 TA
51144466 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:51149763 original size:21 final size:21
Alignment explanation
Indices: 51149739--51149778 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
51149729 AAATTAATTC
*
51149739 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
51149760 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
51149779 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:51151780 original size:19 final size:20
Alignment explanation
Indices: 51151756--51151795 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
51151746 GACTTCAGTC
51151756 TGCAGAACAAAG-AATCATA
1 TGCAGAACAAAGCAATCATA
*
51151775 TGCAGACCAAAGCAATCATA
1 TGCAGAACAAAGCAATCATA
51151795 T
1 T
51151796 TCTACCTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.17
Consensus pattern (20 bp):
TGCAGAACAAAGCAATCATA
Found at i:51153724 original size:18 final size:19
Alignment explanation
Indices: 51153687--51153725 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51153677 AAATCATATT
51153687 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
51153706 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
51153724 TA
1 TA
51153726 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:51154791 original size:41 final size:41
Alignment explanation
Indices: 51154745--51155045 Score: 417
Period size: 41 Copynumber: 7.4 Consensus size: 41
51154735 GTTATATAAC
* * * *
51154745 TTTTAGTGGCGTTTTAGCAAAAGCGCAGTTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
51154786 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
51154827 CTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
51154868 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAGTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
51154909 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
51154950 CTTTAGCGGCGTTTTACCAACAGCGCCGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * * *
51154990 TTTTAGTGGCGTTTTAACAGAAAACGCCGCTATTGCTC-AGT
1 TTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGGT
*
51155031 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
51155046 TGTTAAAACG
Statistics
Matches: 236, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 17 0.07
41 219 0.93
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:51155065 original size:12 final size:12
Alignment explanation
Indices: 51155050--51155075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51155040 CGTTTTTGTT
51155050 AAAACGCCGCTA
1 AAAACGCCGCTA
51155062 AAAACGCCGCTA
1 AAAACGCCGCTA
51155074 AA
1 AA
51155076 GCCTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:51164113 original size:17 final size:17
Alignment explanation
Indices: 51164067--51164124 Score: 73
Period size: 17 Copynumber: 3.3 Consensus size: 17
51164057 ATAAACTTAT
51164067 TAAAATTA-AAAAATATA
1 TAAAATTATAAAAAT-TA
*
51164084 TAAAAACTTATAAATATTA
1 T-AAAA-TTATAAAAATTA
51164103 TAAAATTATAAAAATTA
1 TAAAATTATAAAAATTA
51164120 TAAAA
1 TAAAA
51164125 AAATTATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 17 0.47
18 8 0.22
19 6 0.17
20 5 0.14
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAATTATAAAAATTA
Found at i:51164126 original size:19 final size:19
Alignment explanation
Indices: 51164068--51164144 Score: 72
Period size: 19 Copynumber: 4.1 Consensus size: 19
51164058 TAAACTTATT
51164068 AAAATTA-AAAAATATATAA
1 AAAATTATAAAAAT-TATAA
* *
51164087 AAACTTATAAATATTAT--
1 AAAATTATAAAAATTATAA
51164104 AAAATTATAAAAATTATAAA
1 AAAATTATAAAAATTAT-AA
*
51164124 AAAATTAT-GAAATTAATAA
1 AAAATTATAAAAATT-ATAA
51164143 AA
1 AA
51164145 CTTATTTGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
17 15 0.31
19 18 0.38
20 15 0.31
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (19 bp):
AAAATTATAAAAATTATAA
Found at i:51164129 original size:11 final size:9
Alignment explanation
Indices: 51164009--51164256 Score: 80
Period size: 9 Copynumber: 26.7 Consensus size: 9
51163999 AGAAAATGAT
*
51164009 TAAAAATCA
1 TAAAAATTA
*
51164018 TAGAAATTTA
1 TA-AAAATTA
**
51164028 TAAAATAAAA
1 TAAAA-ATTA
51164038 TAAAAA-TA
1 TAAAAATTA
* *
51164046 TTAATATTGA
1 TAAAAATT-A
*
51164056 TATAAACTTA
1 TA-AAAATTA
*
51164066 TTAAAATTA
1 TAAAAATTA
51164075 -AAAAATATA
1 TAAAAAT-TA
51164084 TAAAAACTTA
1 TAAAAA-TTA
*
51164094 TAAATATTA
1 TAAAAATTA
51164103 T-AAAATTA
1 TAAAAATTA
51164111 TAAAAATTA
1 TAAAAATTA
51164120 TAAAAAAATTA
1 T--AAAAATTA
*
51164131 T-GAAATTAA
1 TAAAAATT-A
*
51164140 TAAAACTTA
1 TAAAAATTA
*
51164149 TTTGAAATATT-
1 --T-AAAAATTA
51164160 T-AAAATTA
1 TAAAAATTA
*
51164168 -AAAAAATA
1 TAAAAATTA
* * *
51164176 TTAGAATTCT
1 TAAAAATT-A
*
51164186 TAAAAAATA
1 TAAAAATTA
* * *
51164195 TTAGAATTCT
1 TAAAAATT-A
*
51164205 TAAAAAATA
1 TAAAAATTA
*
51164214 TTAAAA-TA
1 TAAAAATTA
*
51164222 TTAAAATTGA
1 TAAAAATT-A
*
51164232 TATAAACTTA
1 TA-AAAATTA
51164242 TAAAAATTA
1 TAAAAATTA
51164251 TAAAAA
1 TAAAAA
51164257 AATCATAATA
Statistics
Matches: 172, Mismatches: 43, Indels: 48
0.65 0.16 0.18
Matches are distributed among these distances:
7 5 0.03
8 36 0.21
9 58 0.34
10 48 0.28
11 20 0.12
12 5 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:51164130 original size:28 final size:26
Alignment explanation
Indices: 51164009--51164149 Score: 86
Period size: 28 Copynumber: 5.0 Consensus size: 26
51163999 AGAAAATGAT
* **
51164009 TAAAAATCATAGAAATTTATAAAATAAAA
1 TAAAAATTATA-AAA-TTATAAAA-ATTA
* *
51164038 TAAAAA-TATTAATATTGATATAAACTTA
1 TAAAAATTA-TAAAATT-ATA-AAAATTA
* *
51164066 TTAAAATTAAAAAATATATAAAAACTTA
1 TAAAAATTATAAAAT-TATAAAAA-TTA
*
51164094 TAAATATTATAAAATTATAAAAATTA
1 TAAAAATTATAAAATTATAAAAATTA
* *
51164120 TAAAAAAATTATGAAATTAATAAAACTTA
1 T--AAAAATTATAAAATT-ATAAAAATTA
51164149 T
1 T
51164150 TTGAAATATT
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
26 4 0.05
27 13 0.15
28 47 0.53
29 24 0.27
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (26 bp):
TAAAAATTATAAAATTATAAAAATTA
Found at i:51164192 original size:19 final size:19
Alignment explanation
Indices: 51164168--51164216 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
51164158 TTTAAAATTA
51164168 AAAAAATATTAGAATTCTT
1 AAAAAATATTAGAATTCTT
51164187 AAAAAATATTAGAATTCTT
1 AAAAAATATTAGAATTCTT
51164206 AAAAAATATTA
1 AAAAAATATTA
51164217 AAATATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAAAATATTAGAATTCTT
Found at i:51164225 original size:18 final size:19
Alignment explanation
Indices: 51164168--51164227 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
51164158 TTTAAAATTA
*
51164168 AAAAAATATTAGAATTCTT
1 AAAAAATATTAGAAATCTT
*
51164187 AAAAAATATTAGAATTCTT
1 AAAAAATATTAGAAATCTT
*
51164206 AAAAAATATTA-AAATATT
1 AAAAAATATTAGAAATCTT
51164224 AAAA
1 AAAA
51164228 TTGATATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
18 9 0.23
19 30 0.77
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAAAATATTAGAAATCTT
Found at i:51164682 original size:9 final size:9
Alignment explanation
Indices: 51164660--51164732 Score: 67
Period size: 9 Copynumber: 7.9 Consensus size: 9
51164650 CATGTTGAAG
*
51164660 TTTTTATGAT
1 TTTTTAT-AA
51164670 TTTTTATAA
1 TTTTTATAA
51164679 TTTTTATAAA
1 TTTTTAT-AA
*
51164689 TTTATATGAA
1 TTTTTAT-AA
*
51164699 TTTTAAT-A
1 TTTTTATAA
*
51164707 TTTTTATCA
1 TTTTTATAA
*
51164716 TTTTTATGA
1 TTTTTATAA
51164725 TTTTTATA
1 TTTTTATA
51164733 TAACTGTAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
8 7 0.13
9 24 0.45
10 22 0.42
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:51164702 original size:29 final size:28
Alignment explanation
Indices: 51164664--51164732 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 28
51164654 TTGAAGTTTT
*
51164664 TATGATTTTTTATAATTTTTATAAATTTA
1 TATGAATTTTTATAATTTTTAT-AATTTA
* * *
51164693 TATGAATTTTAAT-ATTTTTATCATTTT
1 TATGAATTTTTATAATTTTTATAATTTA
51164720 TATG-ATTTTTATA
1 TATGAATTTTTATA
51164733 TAACTGTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.21
27 8 0.24
28 8 0.24
29 11 0.32
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (28 bp):
TATGAATTTTTATAATTTTTATAATTTA
Found at i:51164712 original size:20 final size:19
Alignment explanation
Indices: 51164668--51164754 Score: 58
Period size: 20 Copynumber: 4.6 Consensus size: 19
51164658 AGTTTTTATG
*
51164668 ATTTTT-TATAATTTTTAT
1 ATTTTTATATAATTTTAAT
**
51164686 AAATTTATATGAATTTTAAT
1 ATTTTTATAT-AATTTTAAT
51164706 ATTTTTATCAT--TTTT-AT
1 ATTTTTAT-ATAATTTTAAT
* *
51164723 GATTTTTATATAACTGTAAT
1 -ATTTTTATATAATTTTAAT
51164743 ATGTTTT-TATAA
1 AT-TTTTATATAA
51164755 AAAAATAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
17 4 0.07
18 16 0.30
19 12 0.22
20 20 0.37
21 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTTTTATATAATTTTAAT
Found at i:51164743 original size:37 final size:37
Alignment explanation
Indices: 51164670--51164754 Score: 91
Period size: 37 Copynumber: 2.2 Consensus size: 37
51164660 TTTTTATGAT
* *
51164670 TTTTTATAATTTTTATAAATTTATATGAATTTTAATA
1 TTTTTATAATTTTTATAAATTTATATGAACTGTAATA
* **
51164707 TTTTTATCATTTTTATGATTTTTATAT-AACTGTAATA
1 TTTTTATAATTTTTAT-AAATTTATATGAACTGTAATA
51164744 TGTTTTTATAA
1 --TTTTTATAA
51164755 AAAAATAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 23 0.59
38 8 0.21
39 8 0.21
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (37 bp):
TTTTTATAATTTTTATAAATTTATATGAACTGTAATA
Found at i:51164809 original size:10 final size:10
Alignment explanation
Indices: 51164766--51164839 Score: 55
Period size: 10 Copynumber: 7.6 Consensus size: 10
51164756 AAAATAAATA
51164766 TTTTTATAAT
1 TTTTTATAAT
* *
51164776 TTATTAGAA-
1 TTTTTATAAT
51164785 TTTTTAT-AT
1 TTTTTATAAT
51164794 TCTTTTATAAT
1 T-TTTTATAAT
* *
51164805 TTTTTTTAAG
1 TTTTTATAAT
* *
51164815 TTTATATAAA
1 TTTTTATAAT
*
51164825 TTTTCAT-AT
1 TTTTTATAAT
51164834 TTTTTA
1 TTTTTA
51164840 ATATTTAATT
Statistics
Matches: 48, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
8 1 0.02
9 12 0.25
10 32 0.67
11 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:51164858 original size:25 final size:26
Alignment explanation
Indices: 51164824--51164872 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
51164814 GTTTATATAA
51164824 ATTTTCATATTTTTTAATATTTAATT
1 ATTTTCATATTTTTTAATATTTAATT
* *
51164850 ATTTT-ATATTTTTTTATTTTTAA
1 ATTTTCATATTTTTTAATATTTAA
51164873 AATTTGGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (26 bp):
ATTTTCATATTTTTTAATATTTAATT
Found at i:51167018 original size:20 final size:20
Alignment explanation
Indices: 51166993--51167042 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
51166983 TGGCTTAAAA
51166993 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
51167013 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
51167030 GTGGTAGTGGATT
1 TTGGTAGTGGATT
51167043 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:51171656 original size:20 final size:20
Alignment explanation
Indices: 51171631--51171680 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
51171621 TGGCTTAAAA
51171631 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
51171651 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
51171668 GTGGTAGTGGATT
1 TTGGTAGTGGATT
51171681 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:51173790 original size:14 final size:14
Alignment explanation
Indices: 51173771--51173798 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51173761 CAAATATACA
51173771 AATGACACGTAAAG
1 AATGACACGTAAAG
51173785 AATGACACGTAAAG
1 AATGACACGTAAAG
51173799 TTTAAAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (14 bp):
AATGACACGTAAAG
Found at i:51177223 original size:22 final size:23
Alignment explanation
Indices: 51177198--51177244 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
51177188 TTGAAATAAT
*
51177198 TAATATAAAATAAA-AAATCCAG
1 TAATATAAAACAAATAAATCCAG
* *
51177220 TAATATACAACAAATAAATCGAG
1 TAATATAAAACAAATAAATCCAG
51177243 TA
1 TA
51177245 TGTTATCTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.23
Consensus pattern (23 bp):
TAATATAAAACAAATAAATCCAG
Found at i:51179866 original size:57 final size:57
Alignment explanation
Indices: 51179778--51179891 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
51179768 ATCCAAGGGA
51179778 GAAGGGCAATGGTGGGGAAGACCATGATGAAGAATAGATTAAAAACAACAATAGTGG
1 GAAGGGCAATGGTGGGGAAGACCATGATGAAGAATAGATTAAAAACAACAATAGTGG
51179835 GAAGGGCAATGGTGGGGAAGACCATGATGAAGAATAGATTAAAAACAACAATAGTGG
1 GAAGGGCAATGGTGGGGAAGACCATGATGAAGAATAGATTAAAAACAACAATAGTGG
51179892 AAATGGTGGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.44, C:0.09, G:0.32, T:0.16
Consensus pattern (57 bp):
GAAGGGCAATGGTGGGGAAGACCATGATGAAGAATAGATTAAAAACAACAATAGTGG
Found at i:51185987 original size:21 final size:21
Alignment explanation
Indices: 51185963--51186003 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51185953 TTGCCTAGGA
*
51185963 TATGAATTAAATTAAATTGAG
1 TATGAAATAAATTAAATTGAG
**
51185984 TATGAAATGGATTAAATTGA
1 TATGAAATAAATTAAATTGA
51186004 CATTAAATTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (21 bp):
TATGAAATAAATTAAATTGAG
Found at i:51204082 original size:21 final size:21
Alignment explanation
Indices: 51204043--51204107 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
51204033 GAAAGATGAA
*
51204043 AAAGTAAAAGGAACAAGGAAAG
1 AAAGTAAAA-GAAAAAGGAAAG
*
51204065 AAGAG-AAAAGAAAAAGGAAAT
1 AA-AGTAAAAGAAAAAGGAAAG
* *
51204086 AAAGTATAAGCAAAAGGAAAG
1 AAAGTAAAAGAAAAAGGAAAG
51204107 A
1 A
51204108 GAAAAAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.06
21 26 0.72
22 6 0.17
23 2 0.06
ACGTcount: A:0.66, C:0.03, G:0.25, T:0.06
Consensus pattern (21 bp):
AAAGTAAAAGAAAAAGGAAAG
Found at i:51204177 original size:10 final size:9
Alignment explanation
Indices: 51204138--51204173 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
51204128 AATAAAGTGG
51204138 TTTTT-ATA
1 TTTTTAATA
51204146 TATTTTAATA
1 T-TTTTAATA
51204156 TTTTTAATA
1 TTTTTAATA
51204165 TTTTTAATA
1 TTTTTAATA
51204174 ATTTCTCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 1 0.04
9 21 0.81
10 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTAATA
Found at i:51205830 original size:13 final size:14
Alignment explanation
Indices: 51205795--51205840 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
51205785 TAATACGTGA
*
51205795 AAAATATTA-TTTA
1 AAAATATTATTTTT
51205808 AAAATATTATTTTT
1 AAAATATTATTTTT
*
51205822 AAAAT-TTATTATT
1 AAAATATTATTTTT
51205835 AAAATA
1 AAAATA
51205841 AAATTGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 21 0.72
14 8 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAATATTATTTTT
Found at i:51205831 original size:16 final size:16
Alignment explanation
Indices: 51205799--51205838 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
51205789 ACGTGAAAAA
51205799 TATTATTTAAAAATAT
1 TATTATTTAAAAATAT
51205815 TATT-TTT-AAAAT-T
1 TATTATTTAAAAATAT
51205828 TATTA-TTAAAA
1 TATTATTTAAAA
51205839 TAAAATTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.32
14 8 0.36
15 3 0.14
16 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATTTAAAAATAT
Found at i:51205898 original size:25 final size:26
Alignment explanation
Indices: 51205870--51205919 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
51205860 ATTTTAATAA
* *
51205870 ATTATATTAATT-ATATTAATAATTT
1 ATTATATGAATTAATATAAATAATTT
*
51205895 ATTATATGACTTAATATAAATAATT
1 ATTATATGAATTAATATAAATAATT
51205920 AAATATGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTATATGAATTAATATAAATAATTT
Done.