Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 157 of 332
Found at i:51605740 original size:17 final size:15
Alignment explanation
Indices: 51605711--51605746 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
51605701 GTTAGAATCT
51605711 GAAAAAAAAAAAAAG
1 GAAAAAAAAAAAAAG
51605726 GAAAAGAAAAGAAAAAG
1 GAAAA-AAAA-AAAAAG
51605743 GAAA
1 GAAA
51605747 TGATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 4 0.21
17 10 0.53
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAAAAAAG
Found at i:51618456 original size:40 final size:40
Alignment explanation
Indices: 51618362--51618506 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
51618352 TACTCGAATG
*
51618362 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
51618403 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
51618443 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
51618483 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51618507 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:51626499 original size:40 final size:41
Alignment explanation
Indices: 51626389--51626574 Score: 209
Period size: 41 Copynumber: 4.6 Consensus size: 41
51626379 TACTCGAATG
* * *
51626389 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAACAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
51626430 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* *
51626470 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* * * *
51626511 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGTGACC
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* *
51626551 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51626575 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 56 0.46
41 62 0.51
42 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:51626529 original size:81 final size:81
Alignment explanation
Indices: 51626389--51626574 Score: 309
Period size: 81 Copynumber: 2.3 Consensus size: 81
51626379 TACTCGAATG
51626389 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAACAACTACATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAACAACTACATCCGGACTAAGATCCGAAGGC
*
51626454 ATTTGTGCTAGCGACT
66 ATTTGTGCTAGCGACC
* * *
51626470 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAACAACTACATCCGGACTAAGATCCGAAGGC
*
51626535 ATTTGTGCTAGTGACC
66 ATTTGTGCTAGCGACC
* *
51626551 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51626575 CTTGTGCGAG
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 97 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAACAACTACATCCGGACTAAGATCCGAAGGC
ATTTGTGCTAGCGACC
Found at i:51629636 original size:43 final size:42
Alignment explanation
Indices: 51629481--51629637 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
51629471 TGTGTTTTTG
** *
51629481 TGTAAGACCACATCTGGGACGTTGGCATCA-ATTTATGATTTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATCATA-TT-TGA-TTACA
* * * *
51629525 TGTAAGACCATGCCTGGGACATCGAG-ATCATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACGTTG-GCATCATATTTGATTACA
*
51629567 TGTAAGACCCTGTCTAGGAGA-G-TGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCT-GG-GACGTTGGCATC-ATATTTGATTACA
*
51629610 TGTAAGACCAGGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
51629638 TGTACGAGCA
Statistics
Matches: 91, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 3 0.03
42 23 0.25
43 36 0.40
44 27 0.30
45 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCATATTTGATTACA
Found at i:51640627 original size:16 final size:16
Alignment explanation
Indices: 51640589--51640628 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
51640579 TTTCCAACCG
51640589 ATTTGATGCTATTGCC
1 ATTTGATGCTATTGCC
* *
51640605 ATATGATGCTATTGCT
1 ATTTGATGCTATTGCC
51640621 ATTTGATG
1 ATTTGATG
51640629 AGTTTCATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.45
Consensus pattern (16 bp):
ATTTGATGCTATTGCC
Found at i:51647447 original size:28 final size:28
Alignment explanation
Indices: 51647415--51647479 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
51647405 ATTTACTAGA
*
51647415 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATAACC-TCT
51647443 ATACCCCTATGTATGCAAAATAACCTCT
1 ATACCCCTATGTATGCAAAATAACCTCT
51647471 ATACCCCTA
1 ATACCCCTA
51647480 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATAACCTCT
Found at i:51647643 original size:27 final size:28
Alignment explanation
Indices: 51647585--51647674 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
51647575 AGGAAGCGTC
*
51647585 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
**
51647613 CTGGTGGC-CTTGCCAC-GTATATCTGTT
1 CTGGTGGCAC-TGCCACAAAATATCTGTT
51647640 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
51647669 CTGGTG
1 CTGGTG
51647675 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:51647685 original size:29 final size:28
Alignment explanation
Indices: 51647595--51647685 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 28
51647585 CTGGTGGCTA
* *
51647595 TGCCACAAATTATCTGTTCTGGTGGC-C
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
51647622 TTGCCAC-GTATATCTGTTCTGGTGGCAC
1 -TGCCACAAAATATCTGTTCTGGTGACAC
*
51647650 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
51647679 TGTCACA
1 TGCCACA
51647686 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.42
28 15 0.29
29 15 0.29
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:51655501 original size:26 final size:28
Alignment explanation
Indices: 51655444--51655531 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
51655434 AGGAAGCGTC
*
51655444 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
**
51655472 -TGGTGGC-CTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
51655497 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
51655526 CTGGTG
1 CTGGTG
51655532 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
25 8 0.16
26 13 0.26
27 14 0.28
28 8 0.16
29 7 0.14
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:51655542 original size:29 final size:28
Alignment explanation
Indices: 51655454--51655542 Score: 85
Period size: 29 Copynumber: 3.2 Consensus size: 28
51655444 CTGGTGGCTA
* *
51655454 TGCCACAAATTATCTGTT-TGGTGGC-C
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
51655480 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
51655507 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
51655536 TGTCACA
1 TGCCACA
51655543 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
25 8 0.16
26 13 0.25
27 7 0.14
28 8 0.16
29 15 0.29
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:51659441 original size:112 final size:112
Alignment explanation
Indices: 51659244--51659468 Score: 432
Period size: 112 Copynumber: 2.0 Consensus size: 112
51659234 CTATAACCAT
51659244 TAGCTCATTTTCTTAAATCATCAACTATTTGTCACCAGGAAAAGTTTACTATTAACAAAACATAA
1 TAGCTCATTTTCTTAAATCATCAACTATTTGTCACCAGGAAAAGTTTACTATTAACAAAACATAA
51659309 TCCATACTTCTATCTACTATATCATGGTCAATTTTCCCTTATTATTG
66 TCCATACTTCTATCTACTATATCATGGTCAATTTTCCCTTATTATTG
* *
51659356 TAGCTCATTTTCTTAAATCATCAACTGTTTGTCACCAGGAATAGTTTACTATTAACAAAACATAA
1 TAGCTCATTTTCTTAAATCATCAACTATTTGTCACCAGGAAAAGTTTACTATTAACAAAACATAA
51659421 TCCATACTTCTATCTACTATATCATGGTCAATTTTCCCTTATTATTG
66 TCCATACTTCTATCTACTATATCATGGTCAATTTTCCCTTATTATTG
51659468 T
1 T
51659469 TTCATCAGTG
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 111 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (112 bp):
TAGCTCATTTTCTTAAATCATCAACTATTTGTCACCAGGAAAAGTTTACTATTAACAAAACATAA
TCCATACTTCTATCTACTATATCATGGTCAATTTTCCCTTATTATTG
Found at i:51666977 original size:37 final size:37
Alignment explanation
Indices: 51666926--51667001 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
51666916 ATGATCGATG
*
51666926 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
51666963 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
51667000 TT
1 TT
51667002 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:51676717 original size:50 final size:50
Alignment explanation
Indices: 51676639--51676739 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
51676629 TGATTCAGAG
*
51676639 TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCCAATT
1 TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCAAATT
* * *
51676689 TTAGGTATTATCCAAATCATTCAGTTTTCCCAAAATTTATTTCCCAAATT
1 TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCAAATT
51676739 T
1 T
51676740 ACTTCCTGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.41
Consensus pattern (50 bp):
TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCAAATT
Found at i:51682225 original size:25 final size:26
Alignment explanation
Indices: 51682190--51682247 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
51682180 CACTTTTATC
51682190 TTTA-TTTATCTTC-TTTAAGTACT-T
1 TTTATTTTATCTTCATTTAA-TACTAT
51682214 TTTATTTTATCTTCATTTAATACTAT
1 TTTATTTTATCTTCATTTAATACTAT
*
51682240 TTCATTTT
1 TTTATTTT
51682248 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 13 0.43
26 13 0.43
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTTATCTTCATTTAATACTAT
Found at i:51686083 original size:48 final size:45
Alignment explanation
Indices: 51685980--51686290 Score: 185
Period size: 46 Copynumber: 6.5 Consensus size: 45
51685970 TATGCGCGCT
* * * * * * *
51685980 AGTGTAAGACATGTCTGGGACATGTATCAGTCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-AAAGCC
* *
51686026 AGTGTAAGACATTTTTGGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA---AAGCC
* * * * * *
51686074 AGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TAAAGCC
* *
51686120 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATACACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT--A-AAGCC
* * *
51686168 AGTGTAAGA-ACTATCTGGGACATGTCATCGACACT-GATAGATGAGAGCC
1 AGTGTAAGACA-TGTCTGGGACATG-CATCGGC-CTCG--AGAT-AAAGCC
* * * * * * *
51686217 AGTGTAAGGCCTATCTTGGACATGGGATCGGCCTCACTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCT--CGAGAT-AAAGCC
*
51686266 AGAGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
51686291 GCGTCGGCAT
Statistics
Matches: 205, Mismatches: 42, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
45 1 0.00
46 68 0.33
47 2 0.01
48 64 0.31
49 52 0.25
50 15 0.07
51 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAAAGCC
Found at i:51686129 original size:94 final size:95
Alignment explanation
Indices: 51685980--51686300 Score: 276
Period size: 94 Copynumber: 3.3 Consensus size: 95
51685970 TATGCGCGCT
* * * * *
51685980 AGTGTAAGACATGTCTGGGACATGTATCAGTCA--CAATATGAGAGCCAGTGTAAGACATTTTTG
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATTGAAGACGAGAGCCAGTGTAAGACATTTTTG
**
51686043 GGACATGCATCGGCCTCGAGATATTTAAGCC
65 GGACATGCATCGGCCTCGAGATATAAAAGCC
* * * *
51686074 AGTGTAAGACATGTCTAGGACATGCATCGGCATTG-AGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAAGACGAGAGCCAGTGTAAGACATTTTTGG
* * * *
51686138 GACATGCATCGGCCTCGCGATACACAAGCT
66 GACATGCATCGGCCTCGAGATATAAAAGCC
* * * * * * *
51686168 AGTGTAAGA-ACTATCTGGGACATGTCATCGACACTGATAGATGAGAGCCAGTGTAAGGCCTATC
1 AGTGTAAGACA-TGTCTGGGACATG-CATCGGCATTGA-AGACGAGAGCCAGTGTAAGACAT-TT
* * *
51686232 TT-GGACATGGGATCGGCCTC-ACTATATGAAAGCC
62 TTGGGACAT-GCATCGGCCTCGA-GATATAAAAGCC
* *
51686266 AGAGTAAGACCATGTCTGGGACATGGCGTCGGCAT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAT
51686301 CTTAACCCAT
Statistics
Matches: 178, Mismatches: 37, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
93 4 0.02
94 95 0.53
95 9 0.05
97 25 0.14
98 26 0.15
99 17 0.10
100 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAAGACGAGAGCCAGTGTAAGACATTTTTGG
GACATGCATCGGCCTCGAGATATAAAAGCC
Found at i:51688253 original size:93 final size:93
Alignment explanation
Indices: 51688145--51688315 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
51688135 GCCCCTAAGT
* * * *
51688145 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
51688210 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
51688238 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
51688303 CGAGTTCAGATGC
66 CGAGTTCAGATGC
51688316 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:51688305 original size:46 final size:45
Alignment explanation
Indices: 51688142--51688309 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 45
51688132 CCCGCCCCTA
* * * *
51688142 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
* *
51688187 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
* *
51688235 CA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
51688280 AGGTGAACTCGGACTCAACTCAACGAGTTC
1 A-GTGAACTCGGACTCAACTCAACGAGTTC
51688310 AGATGCTCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 53 0.54
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:51688769 original size:30 final size:30
Alignment explanation
Indices: 51688735--51688794 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51688725 ATTTAATACG
51688735 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
51688765 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
51688795 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:51695727 original size:198 final size:197
Alignment explanation
Indices: 51695480--51696074 Score: 1118
Period size: 198 Copynumber: 3.0 Consensus size: 197
51695470 GTATGAAATT
* *
51695480 TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAATTTATTCCTAG
1 TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAAGTTATTCATAG
51695545 ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
66 ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
51695610 TAAAACCCATGGAAAATTTTGAAATTTATGAAATGTATGTACTGTAAATGTAGTATATAAATTTC
131 TAAAACCCATGGAAAATTTT-AAATTTATGAAATGTATGTACTGTAAATGTAGTATATAAATTTC
51695675 AGC
195 AGC
51695678 TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAAGTTATTCATAG
1 TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAAGTTATTCATAG
51695743 ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
66 ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
51695808 TAAAACCCATGGAAAATTCTTAAATTTATGAAATGTATGTACTGTAAATGTAGTATATAAATTTC
131 TAAAACCCATGGAAAATT-TTAAATTTATGAAATGTATGTACTGTAAATGTAGTATATAAATTTC
51695873 AGC
195 AGC
51695876 TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAAGTTATTCATAG
1 TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAAGTTATTCATAG
51695941 ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
66 ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
* * *
51696006 TAAAACCCATGGAAAATTCTAAAATTTATAAAATGTATGTACTGTAAATGTAGTATATAAAATTC
131 TAAAACCCATGGAAAATT-TTAAATTTATGAAATGTATGTACTGTAAATGTAGTATATAAATTTC
51696071 AGC
195 AGC
51696074 T
1 T
51696075 AGTTTTGGAA
Statistics
Matches: 391, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
198 389 0.99
199 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.33
Consensus pattern (197 bp):
TGGGTCATGGTTGAATATGCTAAAAATTTGAAATTTATGGTAGAAAAATGAAAAGTTATTCATAG
ATAAACAACTTTTACAAAGCAATTTTTGATGAAAACTTGATTCAATGACTAAAATGAAAAAGTGG
TAAAACCCATGGAAAATTTTAAATTTATGAAATGTATGTACTGTAAATGTAGTATATAAATTTCA
GC
Found at i:51698512 original size:39 final size:39
Alignment explanation
Indices: 51698469--51698600 Score: 210
Period size: 39 Copynumber: 3.4 Consensus size: 39
51698459 AGTCTTTAAC
* ** * *
51698469 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
51698508 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
51698547 CTGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
51698586 CCGGATATATTTCCA
1 CCGGATATATTTCCA
51698601 ATCTCATATA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:51706563 original size:38 final size:39
Alignment explanation
Indices: 51706445--51706575 Score: 192
Period size: 39 Copynumber: 3.4 Consensus size: 39
51706435 GGTCTTTAAC
* ** * *
51706445 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGG
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
51706484 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
* *
51706523 CCGGATATATTTCTAGCATATAG-CTGTGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
51706561 CCGGATATATTTCCA
1 CCGGATATATTTCCA
51706576 ATCTCATATA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 28 0.33
39 56 0.67
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:51707748 original size:14 final size:14
Alignment explanation
Indices: 51707714--51707751 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
51707704 CACATAAAAT
51707714 CTATATATATATAG
1 CTATATATATATAG
*
51707728 CTTTATATATATA-
1 CTATATATATATAG
51707741 C-ATATATATAT
1 CTATATATATAT
51707752 TTATATAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 9 0.41
13 1 0.05
14 12 0.55
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (14 bp):
CTATATATATATAG
Found at i:51731899 original size:27 final size:27
Alignment explanation
Indices: 51731869--51731926 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
51731859 TTCATTTTTG
51731869 TAGATCGCCACAAAAGCTTCCTTATCA
1 TAGATCGCCACAAAAGCTTCCTTATCA
** *
51731896 TAGATTTCCACAAAGGCTTCCTTATCA
1 TAGATCGCCACAAAAGCTTCCTTATCA
51731923 TAGA
1 TAGA
51731927 CTGCCATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (27 bp):
TAGATCGCCACAAAAGCTTCCTTATCA
Found at i:51731937 original size:27 final size:27
Alignment explanation
Indices: 51731875--51731942 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
51731865 TTTGTAGATC
* *
51731875 GCCACAAAAGCTTCCTTATCATAGATT
1 GCCACAAAGGCTTCCTTATCATAGACT
*
51731902 TCCACAAAGGCTTCCTTATCATAGACT
1 GCCACAAAGGCTTCCTTATCATAGACT
*
51731929 GCCATAAAGGCTTC
1 GCCACAAAGGCTTC
51731943 ATTTTTCTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
GCCACAAAGGCTTCCTTATCATAGACT
Found at i:51734443 original size:28 final size:27
Alignment explanation
Indices: 51734398--51734452 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
51734388 GAACAGCTTG
*
51734398 CTAAGGAGATAGGAGCCCTAACCATCCA
1 CTAAGGAGATAGAAGCCC-AACCATCCA
*
51734426 CTAAGGAGA-AGAAGGCCCAACCGTCCA
1 CTAAGGAGATAGAA-GCCCAACCATCCA
51734453 TAAAGGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.36, C:0.29, G:0.24, T:0.11
Consensus pattern (27 bp):
CTAAGGAGATAGAAGCCCAACCATCCA
Found at i:51738030 original size:12 final size:12
Alignment explanation
Indices: 51738013--51738040 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
51738003 TTACAAGCAA
51738013 AAATAAATAAAC
1 AAATAAATAAAC
51738025 AAATAAATAAAC
1 AAATAAATAAAC
51738037 AAAT
1 AAAT
51738041 GAATGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (12 bp):
AAATAAATAAAC
Found at i:51749540 original size:22 final size:22
Alignment explanation
Indices: 51749515--51749557 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
51749505 GACTATGCAA
51749515 TCTGAGCTCATGAGT-TATGTGG
1 TCTGAGCTCATGA-TATATGTGG
51749537 TCTGAGCTCATGATATATGTG
1 TCTGAGCTCATGATATATGTG
51749558 ACACATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGATATATGTGG
Found at i:51758410 original size:47 final size:49
Alignment explanation
Indices: 51758339--51758465 Score: 152
Period size: 47 Copynumber: 2.6 Consensus size: 49
51758329 AGGGTCTAAT
* * **
51758339 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCA-T-CCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGACT-ATTGAAATCGAA
* * *
51758386 GTCGATGCCATGTCCCAGACATGGTCTTACGTTGACTATTGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGACTATTGAAATCGAA
*
51758435 GCCGATGCCATATCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
51758466 CTAGCTCTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 34 0.51
48 3 0.04
49 29 0.43
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACATTGACTATTGAAATCGAA
Found at i:51761257 original size:10 final size:10
Alignment explanation
Indices: 51761230--51761289 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
51761220 TGAAATTCTA
51761230 AAAGATAAAT
1 AAAGATAAAT
*
51761240 ACAA-ATAATT
1 A-AAGATAAAT
*
51761250 AACGATAAAT
1 AAAGATAAAT
51761260 AAAGATAAAT
1 AAAGATAAAT
51761270 AAAGATAAAT
1 AAAGATAAAT
51761280 GAAA-ATAAAT
1 -AAAGATAAAT
51761290 CCTAAAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 1 0.02
10 37 0.86
11 5 0.12
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:51762840 original size:11 final size:11
Alignment explanation
Indices: 51762805--51762842 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
51762795 AGGAAAAAAT
*
51762805 AAATAAAATTA
1 AAATAAAATAA
51762816 AAATAAAATAA
1 AAATAAAATAA
51762827 AAATAAAAATAA
1 AAAT-AAAATAA
51762839 AAAT
1 AAAT
51762843 TGGGTTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:51766392 original size:40 final size:40
Alignment explanation
Indices: 51766308--51766529 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
51766298 TTGAATGATG
* * * *
51766308 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51766348 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51766388 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51766426 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51766466 TCCGGGTTAAGTCCCGAAGG-ATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51766506 -CC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51766530 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 39 0.24
39 43 0.27
40 72 0.44
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51766447 original size:78 final size:79
Alignment explanation
Indices: 51766308--51766529 Score: 274
Period size: 78 Copynumber: 2.8 Consensus size: 79
51766298 TTGAATGATG
* * * * * *
51766308 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
51766372 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
*
51766388 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
51766452 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* *
51766466 TCCGGGTTAAGTCCCGAAGG-ATTTGTGCGAGTTACTATAA-CC-GGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
51766528 TG
64 TG
51766530 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 72 0.57
79 40 0.32
80 13 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:51774282 original size:40 final size:40
Alignment explanation
Indices: 51774198--51774421 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
51774188 TTGAATGATG
* * * *
51774198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51774238 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51774278 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51774316 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51774356 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51774397 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51774422 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51774416 original size:80 final size:80
Alignment explanation
Indices: 51774198--51774421 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
51774188 TTGAATGATG
* * * * *
51774198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
51774261 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
51774278 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
51774340 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
51774356 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
51774421 G
66 G
51774422 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:51780278 original size:20 final size:20
Alignment explanation
Indices: 51780255--51780314 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
51780245 TGAAATTCTA
*
51780255 AAAGACAAATACAA-ATAATT
1 AAAGACAAATA-AAGATAAAT
*
51780275 AAAGACAATTAAAGATAAAT
1 AAAGACAAATAAAGATAAAT
*
51780295 AAAGATAAATGAAA-ATAAAT
1 AAAGACAAAT-AAAGATAAAT
51780315 CCTAAAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.85
21 3 0.09
ACGTcount: A:0.67, C:0.05, G:0.08, T:0.20
Consensus pattern (20 bp):
AAAGACAAATAAAGATAAAT
Found at i:51780300 original size:10 final size:10
Alignment explanation
Indices: 51780255--51780314 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
51780245 TGAAATTCTA
*
51780255 AAAGACAAAT
1 AAAGATAAAT
*
51780265 ACAA-ATAATT
1 A-AAGATAAAT
* *
51780275 AAAGACAATT
1 AAAGATAAAT
51780285 AAAGATAAAT
1 AAAGATAAAT
51780295 AAAGATAAAT
1 AAAGATAAAT
51780305 GAAA-ATAAAT
1 -AAAGATAAAT
51780315 CCTAAAATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
9 2 0.05
10 35 0.83
11 5 0.12
ACGTcount: A:0.67, C:0.05, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:51785507 original size:79 final size:81
Alignment explanation
Indices: 51785371--51785555 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
51785361 TTGAATGATG
*
51785371 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51785435 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51785450 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51785512 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51785530 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51785556 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51785569 original size:40 final size:40
Alignment explanation
Indices: 51785372--51785555 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
51785362 TGAATGATGT
* * * *
51785372 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51785412 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
51785452 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51785490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51785531 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51785556 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51785577 original size:79 final size:79
Alignment explanation
Indices: 51785372--51785588 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
51785362 TGAATGATGT
** * * * **
51785372 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
51785435 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
51785452 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
51785517 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
51785531 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
51785589 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:51792671 original size:21 final size:20
Alignment explanation
Indices: 51792613--51792673 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
51792603 TTATACTCTA
51792613 AATTGCACTTACGTGCCCCT
1 AATTGCACTTACGTGCCCCT
** *
51792633 -ATTTTACTT-CAGTACCCCT
1 AATTGCACTTAC-GTGCCCCT
51792652 GAATTGCACTTACGTGCCCCT
1 -AATTGCACTTACGTGCCCCT
51792673 A
1 A
51792674 TTTGTACTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
18 1 0.03
19 14 0.45
20 1 0.03
21 14 0.45
22 1 0.03
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (20 bp):
AATTGCACTTACGTGCCCCT
Found at i:51806643 original size:104 final size:105
Alignment explanation
Indices: 51806397--51806664 Score: 441
Period size: 104 Copynumber: 2.6 Consensus size: 105
51806387 TTGTATATAA
** *
51806397 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
51806461 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
51806502 AGGGTTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
51806567 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
51806606 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
51806665 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
104 84 0.55
105 67 0.44
106 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:51810276 original size:33 final size:33
Alignment explanation
Indices: 51810239--51810305 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
51810229 GTTGTAAGAG
51810239 TTGACAGACAAGGGTTTTACTCAACCCAGTTTT
1 TTGACAGACAAGGGTTTTACTCAACCCAGTTTT
* * * *
51810272 TTGACAGGCAGGGGTTTTCCTCAACCCGGTTTT
1 TTGACAGACAAGGGTTTTACTCAACCCAGTTTT
51810305 T
1 T
51810306 CTCATTGGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (33 bp):
TTGACAGACAAGGGTTTTACTCAACCCAGTTTT
Found at i:51814145 original size:19 final size:19
Alignment explanation
Indices: 51814118--51814176 Score: 50
Period size: 19 Copynumber: 3.0 Consensus size: 19
51814108 TATACATTGA
51814118 ATTGCACTTACATGCCCCT
1 ATTGCACTTACATGCCCCT
* *
51814137 ATTGTACTT-CGATACCCCT
1 ATTGCACTTAC-ATGCCCCT
51814156 AAATTGCACTTA-AGTGCCCCT
1 --ATTGCACTTACA-TGCCCCT
51814177 GTTGTACTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 1 0.03
21 14 0.45
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (19 bp):
ATTGCACTTACATGCCCCT
Found at i:51814166 original size:21 final size:20
Alignment explanation
Indices: 51814117--51814245 Score: 59
Period size: 21 Copynumber: 6.4 Consensus size: 20
51814107 TTATACATTG
*
51814117 AATTGCACTTAC-ATGCCCCT
1 AATTGCACTT-CGATACCCCT
*
51814137 -ATTGTACTTCGATACCCCT
1 AATTGCACTTCGATACCCCT
* *
51814156 AAATTGCACTT-AAGTGCCCCT
1 -AATTGCACTTCGA-TACCCCT
* * *
51814177 -GTTGTACTTCGGTACCCCT
1 AATTGCACTTCGATACCCCT
*** *
51814196 AAATTGCACTTATCTGCCCCT
1 -AATTGCACTTCGATACCCCT
* * *
51814217 ATTTGTACTTTGATACCCCT
1 AATTGCACTTCGATACCCCT
51814237 GAATTGCAC
1 -AATTGCAC
51814246 ATAGTGCCCC
Statistics
Matches: 77, Mismatches: 24, Indels: 15
0.66 0.21 0.13
Matches are distributed among these distances:
18 1 0.01
19 28 0.36
20 15 0.19
21 33 0.43
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.34
Consensus pattern (20 bp):
AATTGCACTTCGATACCCCT
Found at i:51814174 original size:40 final size:40
Alignment explanation
Indices: 51814117--51814256 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
51814107 TTATACATTG
51814117 AATTGCACTTACA-TGCCCCTATTGTACTTCGATACCCCTA
1 AATTGCACTTA-AGTGCCCCTATTGTACTTCGATACCCCTA
* *
51814157 AATTGCACTTAAGTGCCCCTGTTGTACTTCGGTACCCCTA
1 AATTGCACTTAAGTGCCCCTATTGTACTTCGATACCCCTA
** * *
51814197 AATTGCACTTATCTGCCCCTATTTGTACTTTGATACCCCTG
1 AATTGCACTTAAGTGCCCCTA-TTGTACTTCGATACCCCTA
*
51814238 AATTGCACAT-AGTGCCCCT
1 AATTGCACTTAAGTGCCCCT
51814257 GTTTACACTG
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 61 0.70
41 25 0.29
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.34
Consensus pattern (40 bp):
AATTGCACTTAAGTGCCCCTATTGTACTTCGATACCCCTA
Found at i:51817568 original size:201 final size:201
Alignment explanation
Indices: 51817223--51817618 Score: 657
Period size: 201 Copynumber: 2.0 Consensus size: 201
51817213 TAAATGATGT
51817223 TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
1 TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
* * * *
51817288 TTTTTAGAAATTTGACCATATATGCAGCACTGTTAGCTACGCAAGTATTCCACGGAGACTATCAA
66 TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
* * *
51817353 ATTATTATTGATTCCATTTGCGTTAGAGGGGAAAGCAATTATGTGGTTAAAGAAACTTCTTCCAA
131 ATTATTATTGATTCCATTTACGTTAGAGGGGAAAGCAAATATGTGGTTAAAGAAACTTCCTCCAA
51817418 ACATCA
196 ACATCA
* * *
51817424 TTTATTAACATGGATCACTAATAAAGTTAGATTTGCTGACCATATAAATGAAGATCCCATAGCAT
1 TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
51817489 TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
66 TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
* * * * *
51817554 ATTATTATTGATTCCATTTATGTTAGAGGGGTAAGTAAATATGTGGTTAGAGACACTTCCTCCAA
131 ATTATTATTGATTCCATTTACGTTAGAGGGGAAAGCAAATATGTGGTTAAAGAAACTTCCTCCAA
51817619 GCACCATCAC
Statistics
Matches: 180, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
201 180 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (201 bp):
TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
ATTATTATTGATTCCATTTACGTTAGAGGGGAAAGCAAATATGTGGTTAAAGAAACTTCCTCCAA
ACATCA
Found at i:51825362 original size:93 final size:93
Alignment explanation
Indices: 51825247--51825418 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51825237 CGCCCATAAG
* * *
51825247 CGAACTCGGACTCAACTCAACGACCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51825312 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
** *
51825340 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51825405 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51825419 TCAACAATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:51825415 original size:46 final size:46
Alignment explanation
Indices: 51825240--51825415 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
51825230 TGTAACCCGC
** * * *
51825240 CCATAAGCGAACTCGGACTCAACTCAACGACCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
51825286 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
51825336 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
51825379 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51825416 TGCTCAACAA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 61 0.56
47 29 0.27
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:51825434 original size:46 final size:46
Alignment explanation
Indices: 51825248--51825434 Score: 150
Period size: 46 Copynumber: 4.0 Consensus size: 46
51825238 GCCCATAAGC
** ** * *
51825248 GAACTCGGACTCAACTCAACGACCTCGGGCGTTC-GCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCATA-GT
* ** * **
51825294 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATCTCT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCAT-AGT
***
51825340 CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACATCCAT-AGT
51825387 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAATCC-TAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC-ATCCATAGT
51825433 GA
1 GA
51825435 CATGTCACTT
Statistics
Matches: 111, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 66 0.59
47 38 0.34
48 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCATAGT
Found at i:51829117 original size:40 final size:40
Alignment explanation
Indices: 51829016--51829195 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
51829006 TCTATATTCA
* *
51829016 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT--
1 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC
* *
51829054 AGGCTAAGA-CCGAAGGCATTTGTGCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC
51829093 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC
* * *
51829133 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATACCC
1 GGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATATATCC
*
51829173 GGGTTAAGACCCGAAGGCAATTG
1 GGGCTAAGACCCGAAGGCAATTG
51829196 AGCTTGTGGT
Statistics
Matches: 129, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
37 27 0.21
38 8 0.06
39 11 0.09
40 80 0.62
41 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC
Found at i:51829210 original size:80 final size:78
Alignment explanation
Indices: 51829016--51829218 Score: 246
Period size: 80 Copynumber: 2.6 Consensus size: 78
51829006 TCTATATTCA
* * * * * *
51829016 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT-AGGCTAAGACCGAAGGCATTTGTGCA
1 GGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATATATCCGGCTAAGACCGAAGGCATTCGTGCA
*
51829080 AGTTGATATATCC
66 AGTTGATATACCC
* *
51829093 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTG
1 GGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATATATCC-GGCTAAGA-CCGAAGGCATTCGTG
* *
51829158 CGAGTTGCTATACCC
64 CAAGTTGATATACCC
* ** *
51829173 GGGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTATATCCGGCTAA
1 GGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATATATCCGGCTAA
51829219 ATTCCAAAGA
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
77 36 0.33
79 14 0.13
80 60 0.55
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (78 bp):
GGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATATATCCGGCTAAGACCGAAGGCATTCGTGCA
AGTTGATATACCC
Found at i:51836677 original size:40 final size:40
Alignment explanation
Indices: 51836619--51836800 Score: 294
Period size: 40 Copynumber: 4.6 Consensus size: 40
51836609 ATTTGAATAC
*
51836619 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51836659 ATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
51836699 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
51836738 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
51836778 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
51836801 ATTGAGCTTG
Statistics
Matches: 133, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.29
40 94 0.71
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:51836751 original size:79 final size:80
Alignment explanation
Indices: 51836619--51836800 Score: 294
Period size: 79 Copynumber: 2.3 Consensus size: 80
51836609 ATTTGAATAC
*
51836619 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATACGGGCTAAGACCCGAAGGCATT
*
51836684 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
*
51836699 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATACGGGCTAAGACCCGAAGGCATT
* *
51836763 CGTGCGAGTTGCTAT
66 CGTGCAAGTTGATAT
* *
51836778 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
51836801 ATTGAGCTTG
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 72 0.76
80 23 0.24
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATACGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:51836826 original size:79 final size:79
Alignment explanation
Indices: 51836621--51836827 Score: 272
Period size: 79 Copynumber: 2.6 Consensus size: 79
51836611 TTGAATACAT
* * * *
51836621 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT-CCGGCTAAGACCCGAAGGCATTCG
*
51836686 TGCAAGTTGATATAT
65 TGCAAGTTGATATAC
51836701 CCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC-GGCTAAGACCCGAAGGCATTCG
* *
51836765 TGCGAGTTGCTATAC
65 TGCAAGTTGATATAC
* * ** * *
51836780 CCGGGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTATATCCGGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGCTAA
51836828 ATTCCAAAGA
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 75 0.67
80 36 0.32
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGCTAAGACCCGAAGGCATTCGT
GCAAGTTGATATAC
Found at i:51838407 original size:15 final size:15
Alignment explanation
Indices: 51838374--51838453 Score: 81
Period size: 15 Copynumber: 5.4 Consensus size: 15
51838364 CAAAGATAAC
*
51838374 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
51838388 AAGAAATCCAAAATA
1 AAGAAATCCAGAATA
* * *
51838403 GAGAAACCCGGAATA
1 AAGAAATCCAGAATA
51838418 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
51838433 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
51838448 AAGAAA
1 AAGAAA
51838454 CCCAAGATAC
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
14 8 0.15
15 44 0.85
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51838462 original size:15 final size:15
Alignment explanation
Indices: 51838385--51838462 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
51838375 AGAAAACCGA
*
51838385 ATAAAGAAATCCAAA
1 ATAAAGAAATCCAAG
* **
51838400 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
51838414 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
51838429 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
51838445 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51838460 ATA
1 ATA
51838463 CGATACTATG
Statistics
Matches: 47, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
14 2 0.04
15 42 0.89
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51841523 original size:93 final size:93
Alignment explanation
Indices: 51841408--51841579 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51841398 CGCCCATAAG
* * *
51841408 CGAACTCGGACTCAACTCAACGACCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51841473 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
** *
51841501 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51841566 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51841580 TCAACAATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:51841576 original size:46 final size:46
Alignment explanation
Indices: 51841401--51841576 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
51841391 TGTAACCCGC
** * * *
51841401 CCATAAGCGAACTCGGACTCAACTCAACGACCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
51841447 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
51841497 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
51841540 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51841577 TGCTCAACAA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 61 0.56
47 29 0.27
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:51841595 original size:46 final size:46
Alignment explanation
Indices: 51841409--51841595 Score: 150
Period size: 46 Copynumber: 4.0 Consensus size: 46
51841399 GCCCATAAGC
** ** * *
51841409 GAACTCGGACTCAACTCAACGACCTCGGGCGTTC-GCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCATA-GT
* ** * **
51841455 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATCTCT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCAT-AGT
***
51841501 CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACATCCAT-AGT
51841548 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAATCC-TAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC-ATCCATAGT
51841594 GA
1 GA
51841596 CATGTCACTT
Statistics
Matches: 111, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 66 0.59
47 38 0.34
48 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCATAGT
Found at i:51863564 original size:40 final size:40
Alignment explanation
Indices: 51863520--51863744 Score: 257
Period size: 40 Copynumber: 5.7 Consensus size: 40
51863510 GCTCCTCGTT
* *
51863520 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
51863560 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
51863600 CAAATGCCTTCGGGA-TTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
51863639 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTATCTCGCA
* * * *
51863679 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ATC-TCGCA
51863720 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51863745 CACCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 33 0.20
40 115 0.70
41 14 0.08
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:51863638 original size:79 final size:80
Alignment explanation
Indices: 51863520--51863744 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 80
51863510 GCTCCTCGTT
* *
51863520 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAATTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTC-GGATCTTAACCCG
51863584 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* **
51863600 CAAATGCCTTCGGGA-TTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGATCTTAACCC
*
51863662 GGATTTAGTATCTCGCA
64 GGATTTAGTAACTCGCA
* * * * * *
51863679 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGT-AATTCGCACAAATGCCTTC-GGATCTTAACC
51863741 CGGA
63 CGGA
51863745 CACCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
78 9 0.07
79 60 0.48
80 43 0.34
81 12 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGATCTTAACCCGG
ATTTAGTAACTCGCA
Found at i:51869783 original size:33 final size:33
Alignment explanation
Indices: 51869723--51869851 Score: 186
Period size: 33 Copynumber: 3.8 Consensus size: 33
51869713 TTTTAAAAAA
*
51869723 TAAATCAGGGTTTAGGACTTTTTAAAAAATAAAT
1 TAAATTAGGGTTTAGGA-TTTTTAAAAAATAAAT
*
51869757 TAAATTAGGATTTAGGATTTTTAAAAAGAATAAAT
1 TAAATTAGGGTTTAGGATTTTT-AAAA-AATAAAT
* *
51869792 TAAATTAGGGTTTAGAATTTTTTAAAAATAAAT
1 TAAATTAGGGTTTAGGATTTTTAAAAAATAAAT
*
51869825 TAAATTAGGGTTTAGGTTTTTTAAAAA
1 TAAATTAGGGTTTAGGATTTTTAAAAA
51869852 TAATTTTATG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
33 36 0.42
34 22 0.26
35 27 0.32
ACGTcount: A:0.44, C:0.02, G:0.15, T:0.40
Consensus pattern (33 bp):
TAAATTAGGGTTTAGGATTTTTAAAAAATAAAT
Found at i:51869827 original size:68 final size:69
Alignment explanation
Indices: 51869723--51869851 Score: 206
Period size: 68 Copynumber: 1.9 Consensus size: 69
51869713 TTTTAAAAAA
*
51869723 TAAATCAGGGTTTAGGACTTTTTAAAAAATAAATTAAATTAGGATTTAGGATTTTTAAAAAGAAT
1 TAAATCAGGGTTTAGGAATTTTTAAAAAATAAATTAAATTAGGATTTAGGATTTTTAAAAAGAAT
51869788 AAAT
66 AAAT
* * * *
51869792 TAAATTAGGGTTTA-GAATTTTTTAAAAATAAATTAAATTAGGGTTTAGGTTTTTTAAAAA
1 TAAATCAGGGTTTAGGAATTTTTAAAAAATAAATTAAATTAGGATTTAGGATTTTTAAAAA
51869852 TAATTTTATG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
68 42 0.76
69 13 0.24
ACGTcount: A:0.44, C:0.02, G:0.15, T:0.40
Consensus pattern (69 bp):
TAAATCAGGGTTTAGGAATTTTTAAAAAATAAATTAAATTAGGATTTAGGATTTTTAAAAAGAAT
AAAT
Found at i:51870388 original size:124 final size:126
Alignment explanation
Indices: 51869950--51870574 Score: 803
Period size: 124 Copynumber: 5.0 Consensus size: 126
51869940 ATTTTTATCT
* * * *
51869950 AGTAGTTTCTGAAAAAATAATTTTGAAAAGATGTTTCTAAAAAAATAGTGTAAAAAATGCTTCAA
1 AGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA
* * * * * * *
51870015 ACAAGATGCACTGTCAGCAAAAATATTTAAAAAAGCTCCCATATGGACGCTCTTTTTCTAC
66 GCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACGCTCTTTTTCTAC
** * **
51870076 AGTAGTTTCTGAAAAAATAATTTTGAG-AGACAGTTCTGAAAAAATAATGTCAAAAGCGCTTCAA
1 AGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA
* * * * *
51870140 GGAGAATGCACTATCAACAAAAGTACTGAAAAAAAGCTCCCACTTGGATGCTCTTTTTCTAC
66 GCAGGATGCACTATCAGCAAAAGTACT-AAAAAAAGCTCCCACATGGACGCTCTTTTTCTAC
*
51870202 AGTAGTTTCTGAAAAAAATAATTTTGAGAAGATGGTTTTGAAAAAATAGTGTCAAAAATGCTTCA
1 AGTAGTTTCTG-AAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCA
* *
51870267 AGCAGGATGCACTACCAGCAAAAGTACTAAAAAAAGCTCCCGCATGGACGCTCTTTTTCTAC
65 AGCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACGCTCTTTTTCTAC
* * * *
51870329 A-TAGTTTCTG-AAAAATAATTTTGAGAAGATGGTTCCGAAAAAATGGTGCCAAAATTGCTTCAA
1 AGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA
* * * * *
51870392 GCAGGATGCACTATCAGCAAAAGTATTGAAAAAAGCTCCCACGTTGATGCTCTTTTTCTAC
66 GCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACGCTCTTTTTCTAC
* * * * *
51870453 AGTAGTTTTTG-AAAAATAATTTTGAGAAAACGATTCTGAAAAAATA--GTAAAAAATGCTTCAA
1 AGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA
* * * * *
51870515 TCAGAATGCACTATCAGCAAAAGTACTAAAAAAAGCTTCCACGTGGACGCTCTTTCTCTA
66 GCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACGCTCTTTTTCTA
51870575 AAATAGTTCC
Statistics
Matches: 432, Mismatches: 63, Indels: 11
0.85 0.12 0.02
Matches are distributed among these distances:
123 65 0.15
124 103 0.24
125 86 0.20
126 76 0.18
127 48 0.11
128 54 0.12
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (126 bp):
AGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAA
GCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACGCTCTTTTTCTAC
Found at i:51873128 original size:40 final size:40
Alignment explanation
Indices: 51873061--51873232 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
51873051 ACTCAATTAT
* *
51873061 CTTCGGGAT-TTAG-CCGGATATAACAACTCCCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
51873100 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
51873140 CTTCGAGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
51873180 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
51873220 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
51873233 TTCGGTTATC
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 97 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:51877612 original size:18 final size:18
Alignment explanation
Indices: 51877586--51877628 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51877576 GACTGGGAAA
* * *
51877586 AGGAAACATATAGGGGTT
1 AGGATACATATAAGGGCT
51877604 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
51877622 AGGATAC
1 AGGATAC
51877629 GCAGCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:51878225 original size:7 final size:7
Alignment explanation
Indices: 51878215--51878257 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
51878205 TTATATACAT
51878215 AATACTA
1 AATACTA
51878222 AATACTA
1 AATACTA
51878229 AATACTA
1 AATACTA
51878236 AATACTA
1 AATACTA
*
51878243 AATACGA
1 AATACTA
51878250 AATGACTA
1 AAT-ACTA
51878258 TGTTATGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 30 0.91
8 3 0.09
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:51879214 original size:25 final size:24
Alignment explanation
Indices: 51879165--51879214 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
51879155 ACTTTGATAA
* *
51879165 AAAAATTATAAAATAAAAATTAAT
1 AAAAATTACAAAATAAAAATAAAT
51879189 AAAAATTACATAAATGAAAAA-AAAT
1 AAAAATTACA-AAAT-AAAAATAAAT
51879214 A
1 A
51879215 TTATTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 9 0.41
25 8 0.36
26 5 0.23
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAAATTACAAAATAAAAATAAAT
Found at i:51895824 original size:6 final size:6
Alignment explanation
Indices: 51895807--51895841 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
51895797 TGGTGTTAAC
*
51895807 CCTGCA CTTGCA CCTGCA CCTGCA CCTGCA CCTGC
1 CCTGCA CCTGCA CCTGCA CCTGCA CCTGCA CCTGC
51895842 CAATCCTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.14, C:0.49, G:0.17, T:0.20
Consensus pattern (6 bp):
CCTGCA
Found at i:51904135 original size:76 final size:76
Alignment explanation
Indices: 51903964--51904175 Score: 230
Period size: 76 Copynumber: 2.8 Consensus size: 76
51903954 ATAATAGGTG
* ** * ** ** * *
51903964 TGCCCTACACTAGTTGGATAAAACAACAATGAGTTGTTCATAGCGCTATTCAGGTAAACCGACGA
1 TGCCCAACACTAGTTGGATGTACCAACAATGAGTTGCACCCAGCACTAGTCAGGTAAACCGACGA
*
51904029 TATCAAATGTG
66 TATCAAATGTC
* * * *
51904040 TGTCGAACACTAGTTGGATGTACCAACAATGAGTTGCACCCAGCACTAGTCGGGTAAATCGACGA
1 TGCCCAACACTAGTTGGATGTACCAACAATGAGTTGCACCCAGCACTAGTCAGGTAAACCGACGA
51904105 TATCAAATGTC
66 TATCAAATGTC
* * *
51904116 TGCCCAACACTAGTTGGATGTACCGAA-AATGCA-TTGCGCCCAGCACTAGTCTGATAAACC
1 TGCCCAACACTAGTTGGATGTACC-AACAATG-AGTTGCACCCAGCACTAGTCAGGTAAACC
51904176 AAAAAGTACA
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
76 110 0.97
77 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (76 bp):
TGCCCAACACTAGTTGGATGTACCAACAATGAGTTGCACCCAGCACTAGTCAGGTAAACCGACGA
TATCAAATGTC
Found at i:51906041 original size:43 final size:43
Alignment explanation
Indices: 51905935--51906104 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
51905925 ATAAAGCTCG
* * * **
51905935 TACAGTGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATATCCCAGACATGGTCTTACACGAAATCACAA
* * * * *
51905976 TATCGATGCCATTTTCCTAGACA-GAGTCTTACACGAAATC-GAA
1 TA-CAATGCCAATATCCCAGACATG-GTCTTACACGAAATCACAA
* * *
51906019 TAACGATGCCAATATCTCAGACATGGTCTTACACGTAATCACAA
1 T-ACAATGCCAATATCCCAGACATGGTCTTACACGAAATCACAA
* * *
51906063 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGAAATCACA
51906105 TCTCCGTACC
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 89 0.87
44 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGAAATCACAA
Found at i:51914230 original size:47 final size:47
Alignment explanation
Indices: 51914179--51914638 Score: 769
Period size: 47 Copynumber: 9.7 Consensus size: 47
51914169 TTAGGATTCT
* * *
51914179 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
51914226 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51914273 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51914322 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51914369 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
51914416 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51914463 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51914510 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
51914557 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
51914604 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51914639 TCCTGAAGGG
Statistics
Matches: 393, Mismatches: 17, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 346 0.88
49 46 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51914901 original size:37 final size:37
Alignment explanation
Indices: 51914757--51914894 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
51914747 CCGAGCTCTA
*
51914757 AAGACCCGATGACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
51914794 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
51914831 AAGACCCGATGACTACGTGTGGAGATTTTGTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
51914868 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
51914895 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:51916232 original size:40 final size:40
Alignment explanation
Indices: 51916174--51916532 Score: 504
Period size: 40 Copynumber: 9.0 Consensus size: 40
51916164 GAGTGAAATG
* *
51916174 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
**
51916214 TCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
51916254 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
51916294 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
51916334 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
51916374 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
51916414 TCCAGG-CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCC-GGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * *
51916454 TCCGGGCTAAGTCCCGAAGAGCATTTATGCTGGTGTTATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * * *
51916494 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
51916533 GTATTCGGGC
Statistics
Matches: 295, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 291 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:51916719 original size:25 final size:25
Alignment explanation
Indices: 51916691--51916740 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51916681 TGTAACAACA
*
51916691 AATGAATAGGGGCACTATGTATGTG
1 AATGAATAGAGGCACTATGTATGTG
* * *
51916716 AATGATTAGAGGCACTGTGTGTGTG
1 AATGAATAGAGGCACTATGTATGTG
51916741 CGAATTCCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.30
Consensus pattern (25 bp):
AATGAATAGAGGCACTATGTATGTG
Found at i:51920936 original size:40 final size:40
Alignment explanation
Indices: 51920804--51920988 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
51920794 TTGAATGATG
* * * *
51920804 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51920844 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51920883 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51920923 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51920964 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51920989 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.26
40 84 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51920940 original size:79 final size:81
Alignment explanation
Indices: 51920804--51920988 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 81
51920794 TTGAATGATG
*
51920804 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51920868 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51920883 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
51920946 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
51920963 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51920989 AACGAGGAGC
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 61 0.65
80 32 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51921010 original size:79 final size:79
Alignment explanation
Indices: 51920805--51921021 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 79
51920795 TGAATGATGT
** * * * **
51920805 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
51920868 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
** * *
51920884 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTG
*
51920949 TGCGAGTTACTATAA
66 TGCGAGATACTA-AA
* * *
51920964 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
51921022 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 74 0.63
80 43 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:51928837 original size:40 final size:40
Alignment explanation
Indices: 51928753--51928938 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
51928743 TTGAATGGTG
* * * * *
51928753 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
51928793 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51928833 TCCGGGTTAAGTCCCGATGGCATTTGTGGGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51928873 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
51928914 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
51928939 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51928956 original size:80 final size:79
Alignment explanation
Indices: 51928754--51928961 Score: 190
Period size: 80 Copynumber: 2.6 Consensus size: 79
51928744 TGAATGGTGT
** * * * *
51928754 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAAG-TCCCGAAGGCATT
*
51928817 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* * *** *
51928834 CCGGGTTAAGTCCCGATGGCATTTGTGGGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAGTCCCGAAGGCATTTG
*
51928899 TGCGAGTTACT-ATAA
65 TGCGAGATACTAAT-A
* *
51928914 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAA
51928962 ATTCTGAAGG
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
79 10 0.10
80 87 0.83
81 8 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:51931456 original size:47 final size:47
Alignment explanation
Indices: 51931405--51931721 Score: 474
Period size: 47 Copynumber: 6.7 Consensus size: 47
51931395 TTAGGATTCT
* * *
51931405 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
51931452 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51931499 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51931546 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
51931593 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
51931640 ACGTGATGGATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
51931687 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51931722 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 255 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51931978 original size:37 final size:37
Alignment explanation
Indices: 51931840--51931977 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
51931830 CCGAGCTCTA
51931840 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
51931877 AAGACCCAATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
51931914 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
51931951 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
51931978 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:51947806 original size:40 final size:40
Alignment explanation
Indices: 51947761--51947943 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
51947751 TCGCACAAGG
* * *
51947761 CCTTCGGGTCTTAGCCCGAATATGGTCACTAGCATAAATA
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
* * *
51947801 CCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
* * *
51947841 CCTTCGGGTCTTAGCCCGGATATAG-CAACTCGGACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATA
* * *
51947881 CCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAA-A
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
*
51947920 GCCTTCGGGACTTAGCCCGGATAT
1 -CCTTCGGGTCTTAGCCCGGATAT
51947944 CATTCGAATA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 119 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
Found at i:51947885 original size:80 final size:80
Alignment explanation
Indices: 51947724--51947943 Score: 243
Period size: 80 Copynumber: 2.8 Consensus size: 80
51947714 ACCCAAGTAT
** * * * *
51947724 CTTCAGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGAATATGG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
51947786 TCACTAGCATAAATAC
65 TCACTAGCACAAATAC
* *
51947802 CTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
* * *
51947866 -CAACTCGGACAAATGC
65 TC-ACTAGCACAAATAC
* * *
51947882 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
51947944 CATTCGAATA
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
78 11 0.09
79 20 0.17
80 89 0.74
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATAC
Found at i:51958856 original size:49 final size:48
Alignment explanation
Indices: 51958783--51959026 Score: 328
Period size: 49 Copynumber: 5.0 Consensus size: 48
51958773 GCTTTATTAT
* * *
51958783 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAATCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
51958832 ATAATTAGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC-TTTTA
* * * * *
51958882 ATAACTGGAGCGTAAGCCCTTTTGATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
51958930 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
51958978 ATAACTGGGGCGTAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTA
51959027 CACTTCCTCC
Statistics
Matches: 173, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
48 71 0.41
49 82 0.47
50 20 0.12
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:51958867 original size:25 final size:24
Alignment explanation
Indices: 51958783--51959026 Score: 328
Period size: 24 Copynumber: 10.0 Consensus size: 24
51958773 GCTTTATTAT
*
51958783 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
51958808 ATAACTGGGGCAAAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
51958832 ATAATTAGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
51958857 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
* * *
51958882 ATAACTGGAGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
51958906 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
51958930 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
51958954 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
51958978 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
51959003 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51959027 CACTTCCTCC
Statistics
Matches: 195, Mismatches: 21, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
24 117 0.60
25 78 0.40
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51959100 original size:20 final size:20
Alignment explanation
Indices: 51959075--51959141 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
51959065 TTATGAATAC
51959075 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
51959095 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51959115 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51959135 ACCATGT
1 ATCATGT
51959142 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:51959106 original size:11 final size:11
Alignment explanation
Indices: 51959075--51959130 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
51959065 TTATGAATAC
51959075 ATCATGTGCAT
1 ATCATGTGCAT
*
51959086 ATCA--TACAT
1 ATCATGTGCAT
51959095 ATCATGTGCAT
1 ATCATGTGCAT
*
51959106 ATCA--TACAT
1 ATCATGTGCAT
*
51959115 GTCATGTGCAT
1 ATCATGTGCAT
51959126 ATCAT
1 ATCAT
51959131 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:51959220 original size:25 final size:25
Alignment explanation
Indices: 51959178--51959225 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51959168 ATATTTAAAC
* * *
51959178 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51959203 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
51959226 CATTTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:51960414 original size:27 final size:27
Alignment explanation
Indices: 51960379--51960479 Score: 125
Period size: 27 Copynumber: 3.7 Consensus size: 27
51960369 GGGCATATTC
* *
51960379 GTCATTTTACCATATAGGGG-TATTACG
1 GTCACTTTACCCTATAGGGGCT-TTACG
*
51960406 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
51960433 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
**
51960460 GTCTTTTTA-CCTAATAGGGG
1 GTCACTTTACCCT-ATAGGGG
51960480 TATTTTAGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 3 0.05
27 62 0.94
28 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (27 bp):
GTCACTTTACCCTATAGGGGCTTTACG
Found at i:51960554 original size:27 final size:27
Alignment explanation
Indices: 51960524--51960575 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
51960514 GTAAATCTAC
51960524 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
51960551 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
51960576 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:51960627 original size:27 final size:27
Alignment explanation
Indices: 51960611--51960792 Score: 210
Period size: 27 Copynumber: 6.8 Consensus size: 27
51960601 CTTTGTAAAT
51960611 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
51960637 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
* *
51960665 CAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
51960692 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
51960718 TTGAGGGTATTTCT-GTAATTTTACAAAC
1 TAG-GGGTATTT-TGGTAATTTTACAAAC
* * * *
51960746 CAAGGGTATTTTAGCAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
51960773 TA-GGGTATTTTAGTAATTTT
1 TAGGGGTATTTTGGTAATTTT
51960793 GTAAATCGAG
Statistics
Matches: 133, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
26 22 0.17
27 109 0.82
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:51960706 original size:81 final size:81
Alignment explanation
Indices: 51960611--51960806 Score: 297
Period size: 81 Copynumber: 2.4 Consensus size: 81
51960601 CTTTGTAAAT
51960611 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATT
* *
51960675 TTGGTAATTTTACAAAC
65 TTAGCAATTTTACAAAC
* *
51960692 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
51960757 TAGCAATTTTACAAAC
66 TAGCAATTTTACAAAC
* ** *
51960773 TA-GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
51960807 AAACAGTAAT
Statistics
Matches: 106, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
80 28 0.26
81 76 0.72
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
TAGCAATTTTACAAAC
Found at i:51960814 original size:27 final size:27
Alignment explanation
Indices: 51960784--51960995 Score: 239
Period size: 27 Copynumber: 7.9 Consensus size: 27
51960774 AGGGTATTTT
*
51960784 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
51960811 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
51960838 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
51960865 GGTAATTCAGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
51960892 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
51960919 -GATAATTATTTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
51960946 GGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
51960973 -GATAATTCTATAAATCGGGGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
51960996 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 161 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:51960830 original size:80 final size:81
Alignment explanation
Indices: 51960611--51960833 Score: 227
Period size: 81 Copynumber: 2.8 Consensus size: 81
51960601 CTTTGTAAAT
* * *** *
51960611 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATT-TCACAAACC-AGTGGTAT
1 TAGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAACCAAG-GGTAT
* *
51960674 TTTGGTAATTTTACAAAC
64 TTTAGCAATTTTACAAAC
* * *** * *
51960692 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTT
1 TAGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTT
51960757 TAGCAATTTTACAAAC
66 TAGCAATTTTACAAAC
** ** *
51960773 TA-GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
1 TAGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTA
51960834 AAACAGTAAT
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
80 47 0.38
81 75 0.60
82 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
TAGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTT
TAGCAATTTTACAAAC
Found at i:51960995 original size:81 final size:81
Alignment explanation
Indices: 51960785--51960995 Score: 266
Period size: 81 Copynumber: 2.6 Consensus size: 81
51960775 GGGTATTTTA
* * *
51960785 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACAGTAATTATAT
51960849 AAATCAAGGGTAAAACG
65 AAATCAAGGGTAAAACG
* * * *
51960866 GTAATTCA-GTAAATCGAGGGTAAAATGGTAATTCTGTAAGTCGAGGGTAAAAC-GATAATTATT
1 GTAATT-ATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAG-TAATTATA
**
51960929 TAAATCGGGGGTAAAACG
64 TAAATCAAGGGTAAAACG
* * *
51960947 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTATAAATCGGGGGTA
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
51960996 CTTTGGTAAT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.02
81 109 0.98
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTATATA
AATCAAGGGTAAAACG
Found at i:51961049 original size:27 final size:27
Alignment explanation
Indices: 51960975--51961090 Score: 85
Period size: 27 Copynumber: 4.3 Consensus size: 27
51960965 GGTAAAACGA
* * * *
51960975 TAATTCTATAAATCGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTAAG
* * *
51961002 TAATTTTACAAGTTGAAGGTATTTAAG
1 TAATTTTACAAATCGAGGGTATTTAAG
51961029 TAATTTTACAAATCGAGGGTATTTCAA-
1 TAATTTTACAAATCGAGGGTATTT-AAG
* * **
51961056 TATTTTTACAAA-CTAAGGGTATTTCGG
1 TAATTTTACAAATC-GAGGGTATTTAAG
51961083 TAATTTTA
1 TAATTTTA
51961091 GTAAACTAAA
Statistics
Matches: 70, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
26 4 0.06
27 64 0.91
28 2 0.03
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTAAG
Found at i:51964826 original size:46 final size:45
Alignment explanation
Indices: 51964678--51964900 Score: 209
Period size: 46 Copynumber: 4.8 Consensus size: 45
51964668 TATCGATGCC
* * * * * *
51964678 GATGCTATATCCCAGATATGGTCTTACACTAGCTCTCATATATCCGTGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCT-T-ACATCT-CGAGCT
51964728 GATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCG-AGCT
* * *
51964772 GATGCATGTCCTATACATGTCTTACACTAGCTTATATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA-GCT
* * * *
51964818 GATGCATGTCCCAGACATGTCTTACACTAACTCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA-GCT
* *
51964864 GATGCATGTCCCAGACATGTTTTACACTAGCTCACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACAT
51964901 AACAGTAGTG
Statistics
Matches: 146, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
43 2 0.01
44 35 0.24
45 1 0.01
46 78 0.53
47 1 0.01
48 13 0.09
49 11 0.08
50 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGCT
Found at i:51964882 original size:92 final size:92
Alignment explanation
Indices: 51964662--51964901 Score: 260
Period size: 92 Copynumber: 2.6 Consensus size: 92
51964652 CAGGAAATCT
* * * *
51964662 TACACATATCG-ATGCCGATGCTATATCCCAGATATGGTCTTACACTAGCTCTCATATATCCGTG
1 TACACATCTCGTATGCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCATATATCCGGG
51964726 CCGATGCATGTCCCAGACATGTCTTACAC
64 CCGATGCATGTCCCAGACATGTCTTACAC
* * * *
51964755 TAGCACATCTCGTA-GCTGATGCATGTCCTATACATGTCTTACACTAGCT-T-ATATCT-CGAGG
1 TA-CACATCTCGTATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCG-GG
*
51964816 CTGATGCATGTCCCAGACATGTCTTACAC
64 CCGATGCATGTCCCAGACATGTCTTACAC
* *
51964845 TA-AC-TCTCGTCTCAATGCCGATGCATGTCCCAGACATGTTTTACACTAGCTCACATA
1 TACACATCTCG--T--ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
51964902 ACAGTAGTGT
Statistics
Matches: 123, Mismatches: 14, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
87 5 0.04
88 2 0.02
89 3 0.02
90 36 0.29
91 2 0.02
92 45 0.37
93 11 0.09
94 18 0.15
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (92 bp):
TACACATCTCGTATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCCGGGCC
GATGCATGTCCCAGACATGTCTTACAC
Found at i:51967222 original size:46 final size:46
Alignment explanation
Indices: 51967154--51967255 Score: 118
Period size: 46 Copynumber: 2.2 Consensus size: 46
51967144 CCCATAAATG
** *
51967154 GTCTTACACTGACTATTATCTTATA-GCCGGTGCATGTCCTAGACAT
1 GTCTTACACTGACTATTATCTTA-AGGCCAATACATGTCCTAGACAT
* * *
51967200 GTCTTACACTGGCT-TATGTCTTAAGGTCAATACATGTCCTAGACAT
1 GTCTTACACTGACTAT-TATCTTAAGGCCAATACATGTCCTAGACAT
51967246 GTCTTACACT
1 GTCTTACACT
51967256 AGCTCTTATC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
45 2 0.04
46 46 0.96
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (46 bp):
GTCTTACACTGACTATTATCTTAAGGCCAATACATGTCCTAGACAT
Found at i:51972932 original size:18 final size:20
Alignment explanation
Indices: 51972896--51972942 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
51972886 TTTTAAGTAT
51972896 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
51972916 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
51972935 ATGATATA
1 AT-ATATA
51972943 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:51973419 original size:50 final size:50
Alignment explanation
Indices: 51973297--51973623 Score: 377
Period size: 50 Copynumber: 6.5 Consensus size: 50
51973287 GTGAGTCATG
* * * * * ** *
51973297 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCG-TTAACTTTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAAGTCACA
* * * *
51973348 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * *
51973398 TGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTAATATGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * * * *
51973448 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * * * *
51973498 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGATTAATATGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
* * *
51973548 TGTGTAGTACTAAGTTCAGGCTACTACATGTACCAGATTGATAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
51973598 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51973624 TGCGTATCAG
Statistics
Matches: 231, Mismatches: 44, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
50 200 0.87
51 30 0.13
52 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACA
Found at i:51973472 original size:100 final size:100
Alignment explanation
Indices: 51973297--51973634 Score: 482
Period size: 100 Copynumber: 3.4 Consensus size: 100
51973287 GTGAGTCATG
* * * * * *
51973297 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCG-TTAACTTTGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGATTAA-TAT-GTCACATGTGTAGTACTAA
51973361 GTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACA
64 GTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACA
*
51973398 TGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTAATATGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGATTAATATGTCACATGTGTAGTACTAAGT
*
51973463 GTAGGCTACTACGTGTATCAGATGGTTAAGTCACG
66 GTAGGCTACTACGTGTATCAGATGGTTAAGTCACA
*
51973498 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGATTAATATGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGATTAATATGTCACATGTGTAGTACTAAGT
* * * * *
51973563 -TCAGGCTACTACATGTACCAGATTGATAAGTCGCA
66 GT-AGGCTACTACGTGTATCAGATGGTTAAGTCACA
* * *
51973598 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGA
51973635 GAGCTTCGGT
Statistics
Matches: 216, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
99 1 0.00
100 178 0.82
101 33 0.15
102 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAATGCAGGCTACTATGTGTACCAGATTAATATGTCACATGTGTAGTACTAAGT
GTAGGCTACTACGTGTATCAGATGGTTAAGTCACA
Found at i:51973569 original size:150 final size:150
Alignment explanation
Indices: 51973297--51973634 Score: 424
Period size: 150 Copynumber: 2.2 Consensus size: 150
51973287 GTGAGTCATG
* * * * * ** ** *
51973297 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGTTAACTTTGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT-GGTTAAGTCACGTGTGTAGTACTAAA
* * ** *
51973362 TGTAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAATGCAGGCTACTACGT
65 TGCAGGCTACTACGTGTACCAGATGAATAAGTCACATGTGTAGTACTAAATGCAGGCTACTACAT
*
51973427 GTACCAGATTAATATGTCACA
130 GTACCAGATTAATAAGTCACA
* *
51973448 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAAAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAAGTCACGTGTGTAGTACTAAAT
* * * * * *
51973513 GCAGGCTACTATGTGTACCAGATTAATATGTCGCATGTGTAGTACTAAGTTCAGGCTACTACATG
66 GCAGGCTACTACGTGTACCAGATGAATAAGTCACATGTGTAGTACTAAATGCAGGCTACTACATG
* *
51973578 TACCAGATTGATAAGTCGCA
131 TACCAGATTAATAAGTCACA
*
51973598 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGA
51973635 GAGCTTCGGT
Statistics
Matches: 158, Mismatches: 29, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
150 127 0.80
151 31 0.20
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAAGTCACGTGTGTAGTACTAAAT
GCAGGCTACTACGTGTACCAGATGAATAAGTCACATGTGTAGTACTAAATGCAGGCTACTACATG
TACCAGATTAATAAGTCACA
Found at i:51973713 original size:16 final size:16
Alignment explanation
Indices: 51973692--51973723 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51973682 ATAATGGAGT
51973692 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
51973708 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
51973724 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:51979907 original size:12 final size:12
Alignment explanation
Indices: 51979890--51979916 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51979880 ATTTGTAAGT
51979890 TTCCTGAACTTA
1 TTCCTGAACTTA
51979902 TTCCTGAACTTA
1 TTCCTGAACTTA
51979914 TTC
1 TTC
51979917 AAGTAGCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.44
Consensus pattern (12 bp):
TTCCTGAACTTA
Found at i:51981894 original size:40 final size:40
Alignment explanation
Indices: 51981669--51981894 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
51981659 GCTCCTCGTT
*
51981669 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
51981709 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
51981749 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
51981789 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51981829 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51981870 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51981895 CATCATTCAA
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 155 0.91
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51984047 original size:29 final size:29
Alignment explanation
Indices: 51984007--51984072 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
51983997 ACCAACCACG
51984007 CACACTTAGTGCCATGCACTTTAAAG-TCA
1 CACACTTAGTGCCATGCA-TTTAAAGTTCA
* *
51984036 CACACTTAGTGCCATGCATTTCAAGTTCG
1 CACACTTAGTGCCATGCATTTAAAGTTCA
51984065 CACACTTA
1 CACACTTA
51984073 CCTTTTTCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 6 0.18
29 28 0.82
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTAAAGTTCA
Found at i:51984216 original size:29 final size:30
Alignment explanation
Indices: 51984177--51984255 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
51984167 CTTAATAATC
51984177 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
51984207 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
51984236 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51984256 ATCTCATGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:51993347 original size:117 final size:120
Alignment explanation
Indices: 51993165--51993387 Score: 303
Period size: 117 Copynumber: 1.9 Consensus size: 120
51993155 GCTCCTCGTT
*
51993165 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
51993230 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
51993285 CAAATGCCTTC-GG-CTTAGCCCGGAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
51993346 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51993388 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
116 3 0.03
117 57 0.63
118 18 0.20
119 2 0.02
120 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51993387 original size:40 final size:40
Alignment explanation
Indices: 51993165--51993387 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
51993155 GCTCCTCGTT
* *
51993165 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51993205 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51993245 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51993285 CAAATGCCTTC-GG-CTTAGCCCGGAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
51993322 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51993363 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51993388 CATCATTCAA
Statistics
Matches: 166, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
37 24 0.14
38 11 0.07
39 13 0.08
40 107 0.64
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:52000519 original size:40 final size:40
Alignment explanation
Indices: 52000473--52000698 Score: 230
Period size: 40 Copynumber: 5.7 Consensus size: 40
52000463 GCTCCTCGTT
* *
52000473 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAATTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-GAGTAACTCACA
* * *
52000513 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTGAGTAACTCACA
* *
52000553 CAAATGCCTTCGGGACTTAGCCCGGAATT-AGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTGAGTAACTCACA
* * * *
52000593 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTGAGTAACTCACA
* * *
52000633 CAAATGCCTTC-GGATCTTAGTCCGGATATG-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TGAGTAACTCA-CA
52000674 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
52000699 CATCATTCAA
Statistics
Matches: 165, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 6 0.04
40 144 0.87
41 15 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTGAGTAACTCACA
Found at i:52004660 original size:133 final size:133
Alignment explanation
Indices: 52004418--52004678 Score: 450
Period size: 133 Copynumber: 2.0 Consensus size: 133
52004408 TCAAACTCTA
* * *
52004418 ATAACCCTCATGCAGAGTATTATACTTACAACTTACTGTTCATATACCACATATAAACTCATTCT
1 ATAACCCTCATGCAAAATATTATACTTACAACTTACTATTCATATACCACATATAAACTCATTCT
*
52004483 TTCAAAACATCTAACATGCAGAACTGTAATACTTACCTAGAGATGGAATGATCACTAATTAAAAC
66 TTCAAAACATCTAACATGCAGAACTGTAATACTTACCTAAAGATGGAATGATCACTAATTAAAAC
52004548 TTG
131 TTG
* * *
52004551 ATAACCCTCATGCAAAATCTTATATTTACAACTTACTATTCATATACCACATATAAACTCATTTT
1 ATAACCCTCATGCAAAATATTATACTTACAACTTACTATTCATATACCACATATAAACTCATTCT
*
52004616 TTCAAAACATCTAACATGCAGAGCTGTAATACTTACCTAAAGATGGAATGATCACTAATTAAA
66 TTCAAAACATCTAACATGCAGAACTGTAATACTTACCTAAAGATGGAATGATCACTAATTAAA
52004679 CCAATAATCC
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 120 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (133 bp):
ATAACCCTCATGCAAAATATTATACTTACAACTTACTATTCATATACCACATATAAACTCATTCT
TTCAAAACATCTAACATGCAGAACTGTAATACTTACCTAAAGATGGAATGATCACTAATTAAAAC
TTG
Found at i:52006474 original size:24 final size:23
Alignment explanation
Indices: 52006440--52006493 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
52006430 TATGAATCCG
* *
52006440 CAAAAGACGAAATGCC-GAAATGC
1 CAAAAGTCGAAAT-CCTGAAAAGC
52006463 CGAAAAGTCGAAATCCTGAAAAGC
1 C-AAAAGTCGAAATCCTGAAAAGC
52006487 CAAAAGT
1 CAAAAGT
52006494 TTAGCTACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.11
Consensus pattern (23 bp):
CAAAAGTCGAAATCCTGAAAAGC
Found at i:52006757 original size:29 final size:29
Alignment explanation
Indices: 52006717--52006791 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
52006707 AATGTGACTG
* *
52006717 GGCCTAACGGGCCATATAAATGTGATTTA
1 GGCCTAATGGGCCATATAAAGGTGATTTA
* *
52006746 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTA
52006775 GGCCTAATGGGCCATAT
1 GGCCTAATGGGCCATAT
52006792 GAATATGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAAGGTGATTTA
Found at i:52007911 original size:17 final size:18
Alignment explanation
Indices: 52007878--52007912 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
52007868 TTTTAAGAAT
52007878 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
52007896 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
52007913 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:52017460 original size:28 final size:28
Alignment explanation
Indices: 52017424--52017498 Score: 123
Period size: 28 Copynumber: 2.7 Consensus size: 28
52017414 TCAAATATGG
*
52017424 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
*
52017452 CACTTAGTGTACGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
*
52017480 CACTTAGTGTGCGAAATAT
1 CACTTAGTGTACGAAATAT
52017499 CGAATGATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:52017929 original size:21 final size:22
Alignment explanation
Indices: 52017898--52017938 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
52017888 GAATGTATTG
*
52017898 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
52017920 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
52017939 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Done.