Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 160 of 332
Found at i:52741344 original size:46 final size:46
Alignment explanation
Indices: 52741294--52741464 Score: 288
Period size: 46 Copynumber: 3.7 Consensus size: 46
52741284 ATGTGGCGAC
*
52741294 GCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAA
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
52741340 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
*
52741386 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATAAGGTAAA
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
* * **
52741432 GCCGAATGGCTAATGTGAGATATGTATGAGATG
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATG
52741465 TGTATATATA
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.35, C:0.10, G:0.32, T:0.23
Consensus pattern (46 bp):
GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
Found at i:52744563 original size:34 final size:34
Alignment explanation
Indices: 52744517--52744596 Score: 144
Period size: 34 Copynumber: 2.4 Consensus size: 34
52744507 AAACAAAGTA
*
52744517 CCCC-TTCGCTATTCAATCCAAAATCTAAAGTTT
1 CCCCATTCTCTATTCAATCCAAAATCTAAAGTTT
52744550 CCCCATTCTCTATTCAATCCAAAATCTAAAGTTT
1 CCCCATTCTCTATTCAATCCAAAATCTAAAGTTT
52744584 CCCCATTCTCTAT
1 CCCCATTCTCTAT
52744597 CTGCCAGAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
33 4 0.09
34 41 0.91
ACGTcount: A:0.29, C:0.33, G:0.04, T:0.35
Consensus pattern (34 bp):
CCCCATTCTCTATTCAATCCAAAATCTAAAGTTT
Found at i:52748938 original size:27 final size:27
Alignment explanation
Indices: 52748888--52748976 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
52748878 TGGAGGAAGC
*
52748888 GTTT-TGGTGGCTATGCCACAAATATCT
1 GTTTCTGGTGGCTCTGCCAC-AATATCT
52748915 GTTTCTGGTGGCTCTGCCACAATATCT
1 GTTTCTGGTGGCTCTGCCACAATATCT
* * *
52748942 GTATCTGGTGACTCTGTCACAATATCT
1 GTTTCTGGTGGCTCTGCCACAATATCT
52748969 G-TTCTGGT
1 GTTTCTGGT
52748977 AGTCATGCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
26 6 0.11
27 36 0.64
28 14 0.25
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
GTTTCTGGTGGCTCTGCCACAATATCT
Found at i:52754904 original size:29 final size:28
Alignment explanation
Indices: 52754869--52754946 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
52754859 TCATGAGATT
52754869 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
52754899 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
52754926 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
52754947 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:52755220 original size:173 final size:174
Alignment explanation
Indices: 52754899--52755225 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
52754889 AAATTGTACA
* *
52754899 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
52754964 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
52755029 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
52755073 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
52755138 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
52755202 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
52755226 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:52761366 original size:40 final size:40
Alignment explanation
Indices: 52761125--52761354 Score: 343
Period size: 40 Copynumber: 5.8 Consensus size: 40
52761115 GCGTATAGAT
*
52761125 TGATATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
52761165 TGATATATCCGGGCTAAGTCCCGATGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
52761205 TGATGTATCCGGGCTAAGACCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
52761245 TGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGTTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* ** *
52761285 TGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
52761325 TGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCA
52761355 ATCATGCTGG
Statistics
Matches: 171, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:52761635 original size:58 final size:57
Alignment explanation
Indices: 52761566--52761674 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
52761556 CGAATGATTA
* *
52761566 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
** * *
52761624 GAGGCACTGTGTGTGTGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCG
52761675 ATCAGTGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 26 0.58
58 19 0.42
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:52763265 original size:85 final size:85
Alignment explanation
Indices: 52763122--52763301 Score: 351
Period size: 85 Copynumber: 2.1 Consensus size: 85
52763112 GGCCGGCCAT
52763122 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
52763187 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
52763207 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
52763272 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
52763292 GGGCATGGGT
1 GAGCATGGGT
52763302 AATAAAATAT
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:52765538 original size:47 final size:47
Alignment explanation
Indices: 52765487--52766071 Score: 729
Period size: 47 Copynumber: 12.1 Consensus size: 47
52765477 TTAGGATTTT
* *
52765487 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
52765534 ATGTGATGAATGTGAACTCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
52765585 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
52765632 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* **
52765679 ATATGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
52765730 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
52765777 CTGTGATGGATGTGAACATGCGTATGTCTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* ** * *
52765824 ATGCGATGAATGTGAACCTGTATATATATGAGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
*
52765875 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
52765922 ATGTGATGAATGTGAACCTGTATATATATATACGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGT--GTGATAAGGCCGAATGGCCA
* *
52765975 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
52766022 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
52766069 ATG
1 ATG
52766072 CGAAACATGT
Statistics
Matches: 472, Mismatches: 48, Indels: 36
0.85 0.09 0.06
Matches are distributed among these distances:
47 290 0.61
48 2 0.00
49 12 0.03
50 1 0.00
51 130 0.28
52 1 0.00
53 36 0.08
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:52765598 original size:98 final size:96
Alignment explanation
Indices: 52765487--52766071 Score: 779
Period size: 98 Copynumber: 6.0 Consensus size: 96
52765477 TTAGGATTTT
*
52765487 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACT
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-
52765552 CGTATATATATGTGTGATAAGGCCGAATGGCCA
65 CG-ATATATATGTGTGATAAGGCCGAATGGCCA
* *
52765585 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
52765649 -ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 GATATATATGTGTGATAAGGCCGAATGGCCA
* ***
52765679 ATATGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
***
52765744 AA-C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACCGATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
52765777 CTGTGATGGATGTGAACATGCGTATGTCTGATAAGGCCGAATGGCCAATGCGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
52765842 TGTATATATATGAGTGATAAGGCTGAATGGCCA
66 -G-ATATATATGTGTGATAAGGCCGAATGGCCA
52765875 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
52765940 TGTATATATATATACGTGATAAGGCCGAATGGCCA
66 -G-ATATATATGT--GTGATAAGGCCGAATGGCCA
* * *
52765975 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-
* *
52766040 TGA-ATATATGTG-G-TAAGGCCGAATGGCTA
65 CGATATATATGTGTGATAAGGCCGAATGGCCA
52766069 ATG
1 ATG
52766072 CGAAACATGT
Statistics
Matches: 438, Mismatches: 38, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
94 101 0.23
95 2 0.00
96 4 0.01
98 249 0.57
99 1 0.00
100 81 0.18
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (96 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
GATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:52765637 original size:145 final size:145
Alignment explanation
Indices: 52765488--52766066 Score: 882
Period size: 145 Copynumber: 4.0 Consensus size: 145
52765478 TAGGATTTTA
52765488 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTC
1 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTC
52765553 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
52765618 AGGCCGAATGGCCAC
131 AGGCCGAATGGCCAC
* *
52765633 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACCC
1 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTC
52765698 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
52765763 AGGCCGAATGGCCAC
131 AGGCCGAATGGCCAC
* *
52765778 TGTGATGGATGTGAACATGCGTATGTCTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAC-C
1 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTC
* *
52765842 TGTATATATATGAGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 -GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
52765907 AAGGCCGAATGGCCAA
130 AAGGCCGAATGGCCAC
* *** *
52765923 TGTGATGAATGTGAACCTGTATATATATATACGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 TGTGATGGATGTGAA-C---ATGCGTATGT--GTGATAAGGCCGAATGGCCAATGTGATGAATGT
* * ** *
52765988 GAACAT-G--CATATA--TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATA
60 GAAC-TCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
*
52766048 TGTGGTAAGGCCGAATGGC
124 TGTGATAAGGCCGAATGGC
52766067 TAATGCGAAA
Statistics
Matches: 402, Mismatches: 23, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
144 1 0.00
145 294 0.73
146 1 0.00
147 59 0.15
149 11 0.03
151 36 0.09
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (145 bp):
TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTC
GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCCAC
Found at i:52766111 original size:46 final size:46
Alignment explanation
Indices: 52766045--52766135 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
52766035 GAACATGAAT
* * *
52766045 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
52766091 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
52766136 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:52766330 original size:37 final size:37
Alignment explanation
Indices: 52766280--52766351 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
52766270 GGAAATATAT
* *
52766280 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACATGTGGAGATTTTG
*
52766317 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACATGTGGAGATTT
52766352 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACATGTGGAGATTTTG
Found at i:52777032 original size:22 final size:22
Alignment explanation
Indices: 52777007--52777051 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
52776997 CTGCAAATAA
52777007 ATAAATGGAGGATCTTGACTTT
1 ATAAATGGAGGATCTTGACTTT
52777029 ATAAATGGAGGATCTTGACTTT
1 ATAAATGGAGGATCTTGACTTT
52777051 A
1 A
52777052 CTTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (22 bp):
ATAAATGGAGGATCTTGACTTT
Found at i:52779726 original size:48 final size:48
Alignment explanation
Indices: 52779655--52779802 Score: 206
Period size: 48 Copynumber: 3.1 Consensus size: 48
52779645 TTGATGTACA
* *
52779655 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATTTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
52779703 AGATATATATATGTGGTAAAGCCGAAAGGCTAGTGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
52779751 AGCCATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
52779799 AGAT
1 AGAT
52779803 TTGTATATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:52781407 original size:40 final size:40
Alignment explanation
Indices: 52781352--52781470 Score: 195
Period size: 40 Copynumber: 3.0 Consensus size: 40
52781342 AAGTTCAGTA
*
52781352 TGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
52781392 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* * *
52781432 TGATGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
52781471 GACAAAATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.17
40 62 0.83
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:52781859 original size:57 final size:58
Alignment explanation
Indices: 52781750--52781860 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
52781740 CGAATGATTA
* *
52781750 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCTTTCAAACGAGCACTATGTGTGCGAAATCGGTAATT
* * *
52781808 GAGGCACTGTGTGTGCGAGTTC-TTCAAACGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCTTTCAAACGAGCACTATGTGTGCGAAATCGGT
52781861 CAGTGGGCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 28 0.58
58 20 0.42
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCTTTCAAACGAGCACTATGTGTGCGAAATCGGTAATT
Found at i:52781870 original size:28 final size:28
Alignment explanation
Indices: 52781782--52781878 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 28
52781772 TTTTAACCGA
*
52781782 GCACTATGTGTGCGAAATCGGT-AATTGAG
1 GCACTATGTGTGCGAGATCGGTCAA-TG-G
* * * * *
52781811 GCACTGTGTGTGCGAGTTC-TTCAAACGA
1 GCACTATGTGTGCGAGATCGGTC-AATGG
*
52781839 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAATGG
*
52781867 GCACTAAGTGTG
1 GCACTATGTGTG
52781879 TGAAATGAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
28 31 0.60
29 19 0.37
30 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAATGG
Found at i:52784827 original size:48 final size:48
Alignment explanation
Indices: 52784763--52784910 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
52784753 TTGATGTACA
*
52784763 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
52784811 AGATATATATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
52784859 AGCCATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
52784907 AGAT
1 AGAT
52784911 GTGTATATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:52793604 original size:151 final size:151
Alignment explanation
Indices: 52793330--52793635 Score: 558
Period size: 151 Copynumber: 2.0 Consensus size: 151
52793320 TCACTTTTCT
* *
52793330 CCCCCAACACTCCTAAAATTACTCCACCATTATCTTCTCAACCACCCATTCAAACACTTTTCAAA
1 CCCCCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCCATTCAAACACTTTTCAAA
* *
52793395 CACCTCAATTTAGGTCAATTTGGATACTTCCACGACATATAGAAAAATAAAATGCTTTTATGCAC
66 CACCTCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGCAC
*
52793460 TGCTGAGCCTTGAACCTTTTA
131 TGCTGAGCCTTGAACCTTATA
*
52793481 CCCCCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCTATTCAAACACTTTTCAAA
1 CCCCCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCCATTCAAACACTTTTCAAA
52793546 CACCTCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGCAC
66 CACCTCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGCAC
52793611 TGCTGAGCCTTGAACCTTATA
131 TGCTGAGCCTTGAACCTTATA
52793632 CCCC
1 CCCC
52793636 AAGAACACTC
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
151 149 1.00
ACGTcount: A:0.33, C:0.31, G:0.08, T:0.28
Consensus pattern (151 bp):
CCCCCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCCATTCAAACACTTTTCAAA
CACCTCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGCAC
TGCTGAGCCTTGAACCTTATA
Found at i:52806851 original size:39 final size:33
Alignment explanation
Indices: 52806772--52806837 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
52806762 ATGCAGAACC
52806772 CTCAAAATAGTTATAATGTTCTTAACTTTAACT
1 CTCAAAATAGTTATAATGTTCTTAACTTTAACT
52806805 CTCAAAATAGTTATAATGTTCTTAACTTTAACT
1 CTCAAAATAGTTATAATGTTCTTAACTTTAACT
52806838 TACATATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.42
Consensus pattern (33 bp):
CTCAAAATAGTTATAATGTTCTTAACTTTAACT
Found at i:52810490 original size:18 final size:18
Alignment explanation
Indices: 52810467--52810502 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
52810457 TTTTGTCCTA
52810467 GGCATCGAAGCGGATGAT
1 GGCATCGAAGCGGATGAT
*
52810485 GGCATCGAAGTGGATGAT
1 GGCATCGAAGCGGATGAT
52810503 TCCCAGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.14, G:0.39, T:0.19
Consensus pattern (18 bp):
GGCATCGAAGCGGATGAT
Found at i:52812604 original size:21 final size:21
Alignment explanation
Indices: 52812580--52812619 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
52812570 ATAGATCTTG
* *
52812580 AATCAGTTTTACCAGATTCCC
1 AATCACTTTTACCAAATTCCC
*
52812601 AATCTCTTTTACCAAATTC
1 AATCACTTTTACCAAATTC
52812620 AGACCCAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.38
Consensus pattern (21 bp):
AATCACTTTTACCAAATTCCC
Found at i:52816748 original size:48 final size:46
Alignment explanation
Indices: 52816680--52816802 Score: 158
Period size: 48 Copynumber: 2.6 Consensus size: 46
52816670 GTCTCAATGT
* *
52816680 CGATGCATATCCCAGCCATGTCTTACACTGGCAT-AAATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TCAAATAT-T-GAGGC
* ** *
52816728 CGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATATTGTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCAAATATTGAGGC
52816774 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
52816803 AGCACTCATA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 32 0.48
47 2 0.03
48 33 0.49
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCAAATATTGAGGC
Found at i:52816791 original size:46 final size:48
Alignment explanation
Indices: 52816586--52816814 Score: 175
Period size: 46 Copynumber: 4.8 Consensus size: 48
52816576 GCAACAAGAT
* * * * * *
52816586 GATGCCATGTCCTAGACAGGTCTTACACTAGCTTGTC-CATCGT-GAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTGGC-TCTCATATC-TCGAGGCC
* * * * * * * *
52816635 GATGCATGTCTCAGACATGTCATACACTAGCTTTC--GTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCGAGGCC
* * **
52816681 GATGCATATCCCAGCCATGTCTTACACTGGCAT-AAATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TCTCATATCTCGAGGCC
* *
52816729 GATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAT-T-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCGAGGCC
* *
52816775 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATATC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATC
52816815 ACCCAATATT
Statistics
Matches: 144, Mismatches: 30, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.49
47 6 0.04
48 62 0.43
49 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCGAGGCC
Found at i:52817910 original size:54 final size:54
Alignment explanation
Indices: 52817846--52817954 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
52817836 TGCGATTTAG
52817846 TCATTTTTCTCAATTAAGCTCAAAAACGCTAAAATTACTTCACAAAATTTTTCA
1 TCATTTTTCTCAATTAAGCTCAAAAACGCTAAAATTACTTCACAAAATTTTTCA
52817900 TCATTTTTCTCAATTAAGCTCAAAAACGCTAAAATTACTTCACAAAATTTTTCA
1 TCATTTTTCTCAATTAAGCTCAAAAACGCTAAAATTACTTCACAAAATTTTTCA
52817954 T
1 T
52817955 GTACTAATAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.38
Consensus pattern (54 bp):
TCATTTTTCTCAATTAAGCTCAAAAACGCTAAAATTACTTCACAAAATTTTTCA
Found at i:52820193 original size:46 final size:43
Alignment explanation
Indices: 52820102--52820227 Score: 110
Period size: 46 Copynumber: 2.8 Consensus size: 43
52820092 CAGGTTATTG
* * * *
52820102 TGAGCTAGTGTAAGACATGTCTGGGAAATGTATCAGCCTCGAGA
1 TGAGCCAGTGTAAGACATGTCT-GGACATGCATCAGCCTCAAGA
* *
52820146 TGTAAGCCAGTGTAAGACATGTCTGTGACATGCAT-TGGCTACAAGA
1 TG--AGCCAGTGTAAGACATGTCTG-GACATGCATCAGCCT-CAAGA
*
52820192 TGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
1 TGAGCCAGTGTAAGA-CATGTCT-GGACAT-GCATC
52820228 GGCATCCTAC
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
44 14 0.21
45 16 0.24
46 37 0.55
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (43 bp):
TGAGCCAGTGTAAGACATGTCTGGACATGCATCAGCCTCAAGA
Found at i:52824876 original size:46 final size:44
Alignment explanation
Indices: 52824817--52824942 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 44
52824807 TGGGTTATTG
*
52824817 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCTACCT-CGAGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATC-ACCTACGAGA
* * *
52824861 TGTAAGCCAGTGTAAGATATGTCTGGGACATGCATCAGCTACTAGA
1 TG--AGCCAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
52824907 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
52824943 GATATCCTAC
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
44 15 0.21
45 16 0.22
46 41 0.57
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (44 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
Found at i:52826869 original size:40 final size:41
Alignment explanation
Indices: 52826810--52826961 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
52826800 CATTTGAATG
* * *
52826810 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
52826850 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
52826890 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
52826930 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
52826962 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:52826973 original size:80 final size:80
Alignment explanation
Indices: 52826810--52826981 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
52826800 CATTTGAATG
* * * * *
52826810 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
52826875 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
52826890 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
52826954 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
52826970 ATATCC-GGCTAA
1 ATATCCGGGCTAA
52826982 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:52830394 original size:40 final size:39
Alignment explanation
Indices: 52830337--52830523 Score: 168
Period size: 39 Copynumber: 4.7 Consensus size: 39
52830327 TTGAATGATG
*
52830337 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCA-A
* *
52830377 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* *
52830416 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* * * * *
52830455 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATAC-CAA
**
52830495 TCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC
52830524 GAATTACTAT
Statistics
Matches: 132, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 72 0.55
40 51 0.39
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
Found at i:52830497 original size:79 final size:79
Alignment explanation
Indices: 52830337--52830560 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 79
52830327 TTGAATGATG
* * * * * *
52830337 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
52830400 TTGTGCGAGATACTAA
64 TTGTGCGAGATACTAA
*
52830416 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
52830477 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACT-AA
** *
52830495 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
52830560 G
66 G
52830561 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
78 26 0.21
79 74 0.59
80 24 0.19
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:52830524 original size:40 final size:40
Alignment explanation
Indices: 52830337--52830560 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
52830327 TTGAATGATG
* * * *
52830337 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
52830377 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
52830416 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
52830456 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
52830495 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
52830536 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
52830561 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
39 73 0.45
40 81 0.49
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52830582 original size:79 final size:77
Alignment explanation
Indices: 52830344--52830593 Score: 233
Period size: 79 Copynumber: 3.2 Consensus size: 77
52830334 ATGTCCGGGC
* * * *
52830344 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
52830407 AGATACTAATCCGGAC
64 AG-GACTAATCCGG-T
52830423 TAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 TAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
52830484 GAGTTACTAAATCCGGGT
63 GAG-GACT-AATCC-GGT
* * **
52830502 TAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
52830567 GAGCTATATCCGGT
66 GA-CTA-ATCCGGT
* *
52830581 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
52830594 TACGTGATTT
Statistics
Matches: 145, Mismatches: 13, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
78 26 0.18
79 82 0.57
80 36 0.25
81 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (77 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAATCCGGT
Found at i:52838341 original size:39 final size:39
Alignment explanation
Indices: 52838243--52838465 Score: 249
Period size: 39 Copynumber: 5.6 Consensus size: 39
52838233 TTGAATGATG
* * *
52838243 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
52838283 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
*
52838323 TCC-GGCTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
52838362 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* *
52838401 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATACTA-AA
*
52838441 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
52838466 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 101 0.62
40 52 0.32
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:52838431 original size:79 final size:79
Alignment explanation
Indices: 52838243--52838465 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
52838233 TTGAATGATG
* * * *
52838243 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-T-ACTATATCCGGGCTAAGACCCGAAGGCATT
52838307 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
52838323 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
52838384 TTGTGCGAGTTACTAAA
63 TTGTGCGAGATACTAAA
* * * * *
52838401 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGATTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATACTATATCCGGGCTAAGACCCGAAGGCATTTG
52838466 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
78 45 0.36
79 67 0.53
80 13 0.10
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:52838457 original size:118 final size:119
Alignment explanation
Indices: 52838243--52838465 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 119
52838233 TTGAATGATG
*
52838243 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
52838308 GTGCGAGATACTAAATCCGGCTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGCTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
52838362 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
52838424 TTGTGCGA-TTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTA-AATCC-GGCTAAGAT-CCGAAGGCATTTG
52838466 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
117 9 0.10
118 64 0.70
119 18 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGCTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:52838483 original size:79 final size:78
Alignment explanation
Indices: 52838296--52838498 Score: 209
Period size: 78 Copynumber: 2.6 Consensus size: 78
52838286 GGACTAAGAT
** *
52838296 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGCTAAGAT-CCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACT
*
52838359 AATTCCGGGCTAAGC
64 AATACCGGGCTAAGC
** * * *
52838374 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
52838437 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
* *
52838453 CCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
52838499 TACGTGATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
77 3 0.03
78 57 0.53
79 48 0.44
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:52849265 original size:43 final size:42
Alignment explanation
Indices: 52849218--52849333 Score: 153
Period size: 41 Copynumber: 2.7 Consensus size: 42
52849208 TCCCAAACAT
* * *
52849218 GGTCTTACATGCAATCACATATCGATGCCACTATTCTAGACAA
1 GGTCTTACACG-AATCACATATCGATGCCAATATCCTAGACAA
* * *
52849261 GGTCTTACACGAATCAAATA-CGATGCCAATGTCCTAGACAT
1 GGTCTTACACGAATCACATATCGATGCCAATATCCTAGACAA
52849302 GGTCTTACACGTAATCACATATCGATGCCAAT
1 GGTCTTACACG-AATCACATATCGATGCCAAT
52849334 GTCCCAAATG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
41 28 0.44
42 16 0.25
43 20 0.31
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGAATCACATATCGATGCCAATATCCTAGACAA
Found at i:52849298 original size:41 final size:43
Alignment explanation
Indices: 52849199--52849337 Score: 174
Period size: 43 Copynumber: 3.3 Consensus size: 43
52849189 ATAACTTATA
* * * *
52849199 ATGCCAACGTCCCAAACATGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCTAGACATGGTCTTACACGCAATCACATATCG
* * * * *
52849242 ATGCCACTATTCTAGACAAGGTCTTACACG-AATCAAATA-CG
1 ATGCCAATGTCCTAGACATGGTCTTACACGCAATCACATATCG
*
52849283 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCTAGACATGGTCTTACACGCAATCACATATCG
52849326 ATGCCAATGTCC
1 ATGCCAATGTCC
52849338 CAAATGTGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 28 0.35
42 16 0.20
43 36 0.45
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACATGGTCTTACACGCAATCACATATCG
Found at i:52849348 original size:43 final size:42
Alignment explanation
Indices: 52849199--52849369 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 42
52849189 ATAACTTATA
* *
52849199 ATGCCAACGTCCCAAACATGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACG-AATCACATATCG
* * * * * * *
52849242 ATGCCACTATTCTAGACAAGGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAATCACATATCG
* *
52849283 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACG-AATCACATATCG
** *
52849326 ATGCCAATGTCCCAAATGTGGTCTTACTCAAGAA-CACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTA--CACGAATCACATATCG
52849369 A
1 A
52849370 AAATCCTATG
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 28 0.27
42 16 0.15
43 56 0.53
44 2 0.02
45 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGAATCACATATCG
Found at i:52855553 original size:16 final size:16
Alignment explanation
Indices: 52855515--52855553 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
52855505 TCGACAAATC
*
52855515 CCAAAATGCCGAAAAG
1 CCAAAATGCCAAAAAG
* *
52855531 TCGAAATGCCAAAAAG
1 CCAAAATGCCAAAAAG
52855547 CCAAAAT
1 CCAAAAT
52855554 TTTGGCTACA
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.23, G:0.15, T:0.10
Consensus pattern (16 bp):
CCAAAATGCCAAAAAG
Found at i:52855807 original size:29 final size:29
Alignment explanation
Indices: 52855765--52855838 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
52855755 CATGACTATA
52855765 AATGTGATTTGGGCCTAATAGG-CCATACG
1 AATGTGATTTGGGCCTAAT-GGACCATACG
**
52855794 AATGTGATTTGGGCCTAATGGACCATGTG
1 AATGTGATTTGGGCCTAATGGACCATACG
*
52855823 AATGAGA-TTGGGCCTA
1 AATGTGATTTGGGCCTA
52855839 GTGGGTCATA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
28 11 0.27
29 30 0.73
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGACCATACG
Found at i:52858765 original size:64 final size:64
Alignment explanation
Indices: 52858664--52858784 Score: 215
Period size: 64 Copynumber: 1.9 Consensus size: 64
52858654 TTCTTTGATG
* *
52858664 AAGATTAATATGGCCTACTCATCGATTTTTTTCTCGAGTCTCTAGCTTCTAAATCTGTTTATCA
1 AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTGTTTATCA
*
52858728 AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTGAATCTG
1 AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTG
52858785 CTTTTCTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (64 bp):
AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTGTTTATCA
Found at i:52863132 original size:40 final size:41
Alignment explanation
Indices: 52863077--52863243 Score: 196
Period size: 40 Copynumber: 4.1 Consensus size: 41
52863067 GCCCGGACTA
* *
52863077 GGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCC
1 GGATATAATCAGCTAGCACAAATGCCTTCGGGTCTTAGCCC
52863117 GGATATAATC-GCTAGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAATCAGCTAGCACAAATGCCTTCGGGTCTTAGCCC
* * * * * *
52863157 GGATAT-AGCAACTCGCACGAATGCCTTCGGATCTTAGTCC
1 GGATATAATCAGCTAGCACAAATGCCTTCGGGTCTTAGCCC
* * * * *
52863197 GGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCC
1 GGATATAATCAGCTAGCACAAATGCCTTCGGGTCTTAGCCC
52863238 GGATAT
1 GGATAT
52863244 CATTCGAATA
Statistics
Matches: 106, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.02
40 74 0.70
41 30 0.28
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (41 bp):
GGATATAATCAGCTAGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:52863228 original size:81 final size:80
Alignment explanation
Indices: 52863091--52863243 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 80
52863081 ATAGTCGCTA
* * * * *
52863091 GCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGATCTTAGCCCGGATATAATCCCTAGCACAAAAGCCTTCGGGACTTAGCC
52863156 CGGATATAGCAACTC
66 CGGATATAGCAACTC
* * * *
52863171 GCACGAATGCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGATCTTAGCCCGGATATAATC-CCTAGCACAAAAGCCTTCGGGACTTAGC
52863236 CCGGATAT
65 CCGGATAT
52863244 CATTCGAATA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
80 30 0.48
81 33 0.52
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGATATAATCCCTAGCACAAAAGCCTTCGGGACTTAGCC
CGGATATAGCAACTC
Found at i:52871222 original size:40 final size:40
Alignment explanation
Indices: 52871177--52871438 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
52871167 CTTGCGCAAG
* * * *
52871177 GCCTTCTGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
52871217 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
52871257 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
52871297 GCCTTCGGGTTTTAG-CCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
52871336 GCCTTC-GGTCTTAG-CCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
52871374 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
52871415 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
52871439 CATTCGAATA
Statistics
Matches: 194, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 31 0.16
39 36 0.19
40 97 0.50
41 29 0.15
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:52871400 original size:117 final size:121
Alignment explanation
Indices: 52871177--52871438 Score: 311
Period size: 117 Copynumber: 2.2 Consensus size: 121
52871167 CTTGCGCAAG
* * * ** * *
52871177 GCCTTCTGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* * *
52871242 GTCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAAT
66 GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAA
** *
52871297 GCCTTCGGGTTTTAG-CCGGATATAATCGCTAGCACAAATGCCTTC-GGTCTTAG-CCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* * * *
52871359 G-CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
66 GTC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAA
52871415 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
52871439 CATTCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
116 4 0.03
117 41 0.34
118 30 0.25
119 33 0.27
120 13 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAA
Found at i:52876182 original size:39 final size:39
Alignment explanation
Indices: 52876139--52876297 Score: 230
Period size: 39 Copynumber: 4.1 Consensus size: 39
52876129 GGATTCCATT
* *
52876139 CCAGCATGTAGCCTGTGGACTTCAAGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
52876178 CCAGCATATAGCTTGCGGCCTTCAAGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
52876217 CCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
52876256 CCAACATATAGCCTGCGGA-TCTCATGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACT-TCAAGTCCGGATATATTC
52876295 CCA
1 CCA
52876298 ATATCATGCA
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (39 bp):
CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
Found at i:52879928 original size:39 final size:40
Alignment explanation
Indices: 52879883--52879970 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
52879873 CGGGGTTTAG
* *
52879883 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATCAAGGCCTTCGGGACTTAAC
*** * * *
52879922 CCGGATATGGTCACTAGCATGAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATCAAGGCCTTCGGGACTTAAC
52879962 CCGGATATA
1 CCGGATATA
52879971 GTTGCTAGCA
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
39 15 0.38
40 24 0.62
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATCAAGGCCTTCGGGACTTAAC
Found at i:52879953 original size:40 final size:40
Alignment explanation
Indices: 52879906--52880050 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
52879896 CTCGCACAAG
* * * * **
52879906 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
52879946 GCCTTCGGGACTTAGCCCGGATATAGTTGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
52879986 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
52880027 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
52880051 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:52899872 original size:42 final size:42
Alignment explanation
Indices: 52899693--52899897 Score: 148
Period size: 42 Copynumber: 4.7 Consensus size: 42
52899683 AGTAAGATGC
* *
52899693 CAATGACATATCCCAGATATCGTCTTACATGGGATCACATA-
1 CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
* * * * *
52899734 CGATGCCAATAGCCCA-ACTATGGTCTTACAAGATG-TCTCATAT
1 CAATGCC-ATATCCCAGA-TATGGTCTTACATG-GGATCACATAT
* * * * * **
52899777 CGATGCCAT-GCCCGAGACATGGTATTACACGAAATCACATATTGAT
1 CAATGCCATATCCC-AGATATGGTCTTACATGGGATCAC--A-T-AT
52899823 GCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
1 --CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
* *
52899867 CAATGCCATATCTCAGATATTGTCTTACATG
1 CAATGCCATATCCCAGATATGGTCTTACATG
52899898 AAACAATACA
Statistics
Matches: 128, Mismatches: 22, Indels: 27
0.72 0.12 0.15
Matches are distributed among these distances:
41 10 0.08
42 71 0.55
43 9 0.07
44 3 0.02
45 2 0.02
46 3 0.02
48 27 0.21
49 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
Found at i:52901842 original size:21 final size:21
Alignment explanation
Indices: 52901818--52901868 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
52901808 TTAGGGATAG
52901818 TTTGGAAACAAAA-TAGAAAAT
1 TTTGGAAACAAAATTA-AAAAT
*
52901839 TTT-GAAATAAAATTAAAAAT
1 TTTGGAAACAAAATTAAAAAT
52901859 TTTGGAAACA
1 TTTGGAAACA
52901869 TGGGTCACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.55, C:0.04, G:0.12, T:0.29
Consensus pattern (21 bp):
TTTGGAAACAAAATTAAAAAT
Found at i:52904159 original size:21 final size:20
Alignment explanation
Indices: 52904121--52904159 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
52904111 CTCTTGAAAC
*
52904121 AGGGCACACACCCGTGTGGA
1 AGGGCACACACCCATGTGGA
*
52904141 AGGGCAACACGCCCATGTG
1 AGGGC-ACACACCCATGTG
52904160 TTCATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCATGTGGA
Found at i:52904330 original size:28 final size:28
Alignment explanation
Indices: 52904279--52904334 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
52904269 ACAAGGCTTT
*
52904279 TCACACGGCATGACACACTCCCGTGTCCC
1 TCACACGGCATGA-ACACGCCCGTGTCCC
52904308 TCACACGGCCATG-ACACGCCCGTGTCC
1 TCACACGG-CATGAACACGCCCGTGTCC
52904335 TAGCCCTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 13 0.52
29 8 0.32
30 4 0.16
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.16
Consensus pattern (28 bp):
TCACACGGCATGAACACGCCCGTGTCCC
Found at i:52905466 original size:48 final size:48
Alignment explanation
Indices: 52905410--52905575 Score: 194
Period size: 48 Copynumber: 3.5 Consensus size: 48
52905400 AATCTGACAC
* * * * *
52905410 CATGTCCCAGATA-GCTCTTACACTAGCTTGTATATCGCGAGGCCGATG
1 CATGTCCCAGACATG-TCTTACACTAGCTTATAAATCTCAAGGCCGATG
* * * *
52905458 CATGTCCCAGTCATGTCTTACACTAGC-TCT-CATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATAAATCTCAAGGCCGATG
* * *
52905504 CATGTCCTAAACATGTCTTACACTAGCTTAAAAATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATAAATCTCAAGGCCGATG
52905552 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
52905576 GGCTCTCATG
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
46 36 0.36
47 3 0.03
48 59 0.60
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATAAATCTCAAGGCCGATG
Found at i:52905481 original size:92 final size:94
Alignment explanation
Indices: 52905309--52905481 Score: 244
Period size: 93 Copynumber: 1.9 Consensus size: 94
52905299 GGTTAAGATG
* * *
52905309 CTGACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCAAGGCCGATGCTATGTCCC
1 CTGACACCATGTCCCAGACATGCTCTTACACTAGCTTTCATATAGCAAGGCCGATGCTATGTCCC
52905374 AGACAAGTCTTACACTGACACACAAAAAT
66 AGACAAGTCTTACACTGACACACAAAAAT
* * *
52905403 CTGACACCATGTCCCAGATA-GCTCTTACACTAGCTTGT-ATATCGCGAGGCCGATGC-ATGTCC
1 CTGACACCATGTCCCAGACATGCTCTTACACTAGCTT-TCATATAGCAAGGCCGATGCTATGTCC
* *
52905465 CAGTCATGTCTTACACT
65 CAGACAAGTCTTACACT
52905482 AGCTCTCATC
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 21 0.30
93 30 0.43
94 19 0.27
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (94 bp):
CTGACACCATGTCCCAGACATGCTCTTACACTAGCTTTCATATAGCAAGGCCGATGCTATGTCCC
AGACAAGTCTTACACTGACACACAAAAAT
Found at i:52905510 original size:94 final size:94
Alignment explanation
Indices: 52905425--52905624 Score: 251
Period size: 94 Copynumber: 2.1 Consensus size: 94
52905415 CCCAGATAGC
** * * *
52905425 TCTTACACTAGCTTGTATATCGCGAGGCCGATGCATGTCCCAGTCATGTCTTACACTAGCTCTCA
1 TCTTACACTAGCTTAAAAATCGCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA
*
52905490 TCTCAATGCCGATGCATGTCCTAAACATG
66 TCTCAATGCCGATGCATGTCCCAAACATG
* *
52905519 TCTTACACTAGCTTAAAAATCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA
1 TCTTACACTAGCTTAAAAATCGCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA
* * * **
52905584 TGCT--GTGGCTGATGCATTTCCCAGTCATG
66 T-CTCAAT-GCCGATGCATGTCCCAAACATG
52905613 TCTTACACTAGC
1 TCTTACACTAGC
52905625 ACACATATCA
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
93 1 0.01
94 88 0.97
95 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (94 bp):
TCTTACACTAGCTTAAAAATCGCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA
TCTCAATGCCGATGCATGTCCCAAACATG
Found at i:52905519 original size:46 final size:46
Alignment explanation
Indices: 52905316--52905624 Score: 207
Period size: 46 Copynumber: 6.6 Consensus size: 46
52905306 ATGCTGACGC
* * *
52905316 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCAAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCT--CAAGGCCGATG
* * * ** ** * **
52905365 CTATGTCCCAGACAAGTCTTACACT-G-ACACA-CAAAAATCTGACAC
1 C-ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGA-TG
* * * * *
52905410 CATGTCCCAGATA-GCTCTTACACTAGCTTGTATATCGCGAGGCCGATG
1 CATGTCCCAGACATG-TCTTACACTAGC-TCT-CATCTCAAGGCCGATG
* *
52905458 CATGTCCCAGTCATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG
* * *
52905504 CATGTCCTAAACATGTCTTACACTAGCT-TAAAAATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT---CATCTCAAGGCCGATG
* ** *
52905552 CATGTCCCAGACATGTCTTACACTGGCTCTCATGCT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAGGCCGATG
* *
52905598 CATTTCCCAGTCATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
52905625 ACACATATCA
Statistics
Matches: 199, Mismatches: 47, Indels: 31
0.72 0.17 0.11
Matches are distributed among these distances:
43 1 0.01
44 25 0.13
45 3 0.02
46 70 0.35
47 6 0.03
48 64 0.32
49 18 0.09
50 12 0.06
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG
Found at i:52914760 original size:42 final size:42
Alignment explanation
Indices: 52914714--52914808 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 42
52914704 TAGCCCAGCT
* *
52914714 ATGGTCTTATAAGAATCTCATATCAATGCCAATGTCCCAAAC
1 ATGGTCTTACAACAATCTCATATCAATGCCAATGTCCCAAAC
* * * *
52914756 ATGGTCTTACACCAATTTCATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACAACAATCTCATATCAATGCCAATGTCCCAAAC
*
52914798 ATGATCTTACA
1 ATGGTCTTACA
52914809 TGAAATCACA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACAACAATCTCATATCAATGCCAATGTCCCAAAC
Found at i:52917743 original size:42 final size:42
Alignment explanation
Indices: 52917633--52917785 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 42
52917623 AGTTTGTACA
* * * *
52917633 ATGCCAACGTTCCGGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATAT-G
*
52917676 ATGTC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATG
* *
52917718 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-GAAATCA-AA-TATG
* *
52917762 ATGCTAACATCCCAGACGTGGTCT
1 ATGCCAACGTCCCAGACGTGGTCT
52917786 GACATGATAT
Statistics
Matches: 93, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 39 0.42
44 26 0.28
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATG
Found at i:52930408 original size:44 final size:43
Alignment explanation
Indices: 52930350--52930503 Score: 159
Period size: 44 Copynumber: 3.5 Consensus size: 43
52930340 GACTATATAA
52930350 ATATATTGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTAT
1 ATATATTGGCACTTAGTGTGCGAGA-TGAGATAGCTTCGGCTAT
* * *
52930394 ATATATTGGTACTTAGTGTGC-ATGTTTGAGATAGCTTCGACTATAT
1 ATATATTGGCACTTAGTGTGCGA-G-ATGAGATAGCTTCGGC--TAT
* **
52930440 ATATATTGGCACTTAGTGTGTGAGATCGATTTAGCTTCGGCTAT
1 ATATATTGGCACTTAGTGTGCGAGAT-GAGATAGCTTCGGCTAT
* * *
52930484 TTAT-TTGACACTTATTGTGC
1 ATATATTGGCACTTAGTGTGC
52930504 AGGTTTCCTG
Statistics
Matches: 91, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
43 14 0.15
44 41 0.45
45 1 0.01
46 34 0.37
47 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
ATATATTGGCACTTAGTGTGCGAGATGAGATAGCTTCGGCTAT
Found at i:52930451 original size:90 final size:90
Alignment explanation
Indices: 52930325--52930509 Score: 239
Period size: 90 Copynumber: 2.0 Consensus size: 90
52930315 CTTGGTGCGA
*
52930325 GTTTGAAATAGTTTCGACTATATAAATATATTGGCACTTAGTGTGCGAGA-CTGAGATAGCTTCG
1 GTTTGAAATAGCTTCGACTATAT-AATATATTGGCACTTAGTGTGCGAGATC-GAGATAGCTTCG
** *
52930389 GCTATATATATTGGTACTTAGTGTGCAT
64 GCTATATAT-TTGACACTTAGTGTGCAG
* * **
52930417 GTTTGAGATAGCTTCGACTATAT-ATATATTGGCACTTAGTGTGTGAGATCGATTTAGCTTCGGC
1 GTTTGAAATAGCTTCGACTATATAATATATTGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC
* *
52930481 TATTTATTTGACACTTATTGTGCAG
66 TATATATTTGACACTTAGTGTGCAG
52930506 GTTT
1 GTTT
52930510 CCTGAGTATC
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
89 18 0.22
90 42 0.51
91 1 0.01
92 21 0.26
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.39
Consensus pattern (90 bp):
GTTTGAAATAGCTTCGACTATATAATATATTGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC
TATATATTTGACACTTAGTGTGCAG
Found at i:52930458 original size:46 final size:46
Alignment explanation
Indices: 52930307--52930459 Score: 190
Period size: 46 Copynumber: 3.4 Consensus size: 46
52930297 TTCGGTTCCG
* *
52930307 TATTGGCACTT-G-GTGCGAGTTTGAAATAGTTTCGACTATATAAATA
1 TATTGGCACTTAGTGTGCGAGTTTGAGATAGCTTCGACTATAT--ATA
** *
52930353 TATTGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGC--TATATA
1 TATTGGCACTTAGTGTGCGAGTTTGAGATAGCTTCGACTATATATA
*
52930397 TATTGGTACTTAGTGTGC-ATGTTTGAGATAGCTTCGACTATATATA
1 TATTGGCACTTAGTGTGCGA-GTTTGAGATAGCTTCGACTATATATA
52930443 TATTGGCACTTAGTGTG
1 TATTGGCACTTAGTGTG
52930460 TGAGATCGAT
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.01
44 35 0.38
46 36 0.39
47 1 0.01
48 19 0.21
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.37
Consensus pattern (46 bp):
TATTGGCACTTAGTGTGCGAGTTTGAGATAGCTTCGACTATATATA
Found at i:52930475 original size:46 final size:45
Alignment explanation
Indices: 52930307--52930483 Score: 148
Period size: 46 Copynumber: 3.9 Consensus size: 45
52930297 TTCGGTTCCG
* * * *
52930307 TATTGGCACTT-G-GTGCGAGTTTGAAATAGTTTCGACTATATAAATA
1 TATTGGCACTTAGTGTG-GAGATCGAGATAGCTTCGACTATAT--ATA
*
52930353 TATTGGCACTTAGTGTGCGAGA-CTGAGATAGCTTCGGC--TATATA
1 TATTGGCACTTAGTGTG-GAGATC-GAGATAGCTTCGACTATATATA
* * * *
52930397 TATTGGTACTTAGTGTGCATGTTTGAGATAGCTTCGACTATATATA
1 TATTGGCACTTAGTGTGGA-GATCGAGATAGCTTCGACTATATATA
** *
52930443 TATTGGCACTTAGTGTGTGAGATCGATTTAGCTTCGGCTAT
1 TATTGGCACTTAGTGTG-GAGATCGAGATAGCTTCGACTAT
52930484 TTATTTGACA
Statistics
Matches: 106, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 33 0.31
46 52 0.49
47 2 0.02
48 18 0.17
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.37
Consensus pattern (45 bp):
TATTGGCACTTAGTGTGGAGATCGAGATAGCTTCGACTATATATA
Found at i:52933846 original size:43 final size:42
Alignment explanation
Indices: 52933710--52933868 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
52933700 TATGTGTTAT
* * *
52933710 CATGTAAGACCACATCTGAGACATTGGCATCG-ACTTATGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGA-TTA
* * *
52933754 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTTATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTA
*
52933796 CATGTAAGACC-CTTTCTGGGACAG-TGGCATCGGTATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATC-GTATTTGATTA
*
52933839 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
52933869 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 36 0.37
44 31 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTA
Found at i:52944545 original size:29 final size:29
Alignment explanation
Indices: 52944487--52944643 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
52944477 ATAGTAAGTC
*
52944487 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
52944515 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
52944544 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
52944573 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
52944601 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
52944630 CGCACACTTAGTGC
1 CGCACACTTAGTGC
52944644 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:52944594 original size:57 final size:58
Alignment explanation
Indices: 52944487--52944643 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
52944477 ATAGTAAGTC
*
52944487 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
52944544 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
52944601 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
52944644 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:52950253 original size:39 final size:39
Alignment explanation
Indices: 52950059--52950241 Score: 303
Period size: 39 Copynumber: 4.7 Consensus size: 39
52950049 CATGGTATTT
*
52950059 GAAATATATCCGGACATGAGGTCTGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
52950098 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
*
52950137 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
52950176 GGAATATATCCAGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * *
52950215 AAAATATATCCGGACTTGAAGTCCGCA
1 GAAATATATCCGGACATGAGGTCCGCA
52950242 AGCCACGTGC
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (39 bp):
GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:52958042 original size:14 final size:14
Alignment explanation
Indices: 52958023--52958054 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
52958013 TCCAATCACC
52958023 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
52958037 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
52958051 GGGC
1 GGGC
52958055 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:52963155 original size:14 final size:14
Alignment explanation
Indices: 52963136--52963167 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
52963126 TCCAATCACC
52963136 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
52963150 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
52963164 GGGC
1 GGGC
52963168 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:52965169 original size:40 final size:39
Alignment explanation
Indices: 52965087--52965307 Score: 234
Period size: 40 Copynumber: 5.6 Consensus size: 39
52965077 TATTCGGATG
* *
52965087 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATAT-CGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
52965126 ATATTCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATA-TCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
52965166 ATATCTGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATC-GGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
52965206 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATC-GGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * * *
52965246 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTG-CT
1 ATAT-CGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
* *
52965286 ATATCCGGCTAAATCCCGAAGG
1 ATATCGGGCTAAGTCCCGAAGG
52965308 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
39 42 0.27
40 110 0.70
41 6 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
ATATCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:52965228 original size:80 final size:79
Alignment explanation
Indices: 52965087--52965307 Score: 286
Period size: 80 Copynumber: 2.8 Consensus size: 79
52965077 TATTCGGATG
* * *
52965087 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAG-TGACTATAT-TCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCT-GGGCTAAGTCCCGAAGGC
*
52965150 AGTTGTGCTATTGACT
64 AGTTGTGCTAGTGACT
* *
52965166 ATATCTGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCA
*
52965231 TTTGTGCTAGTGACT
65 GTTGTGCTAGTGACT
* * * *
52965246 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCTATATC-CGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGG
52965308 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 38 0.30
80 85 0.67
81 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCAG
TTGTGCTAGTGACT
Found at i:52973659 original size:40 final size:40
Alignment explanation
Indices: 52973571--52973791 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 40
52973561 TATTCGGATG
* * * * *
52973571 ATATTCGGGCTAAGTCCCGAGGGCA-TGGTGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
52973610 ATATTCGGGCTAAGTCCCGAAGCCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
52973650 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* * *
52973690 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
52973730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
52973770 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
52973792 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 39 0.25
40 114 0.72
41 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:52973720 original size:80 final size:80
Alignment explanation
Indices: 52973571--52973791 Score: 288
Period size: 80 Copynumber: 2.8 Consensus size: 80
52973561 TATTCGGATG
* * * * * *
52973571 ATATTCGGGCTAAGTCCCGAGGGCA-TGGTGCTAG-TGACGATAT-TCGGGCTAAGTCCCGAAGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCT-GGGCTAAGTCCCGAAGG
*
52973633 CAGTTGTGCTATTGACT
64 CAGTTGTGCTAGTGACT
*
52973650 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCA
*
52973715 TTTGTGCTAGTGACT
66 GTTGTGCTAGTGACT
* * *
52973730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATC-CGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGG
52973792 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 38 0.30
80 86 0.68
81 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCA
GTTGTGCTAGTGACT
Found at i:52975997 original size:40 final size:40
Alignment explanation
Indices: 52975901--52976118 Score: 230
Period size: 40 Copynumber: 5.5 Consensus size: 40
52975891 TGGATGATAA
*
52975901 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
52975942 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
52975982 CCGGGTTAAGTCCCGAAGACATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
52976022 CTGGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** *
52976062 CCGGGCTGTGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
52976101 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
52976119 TACTTGGCTT
Statistics
Matches: 150, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
38 14 0.09
39 14 0.09
40 95 0.63
41 23 0.15
42 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:52979080 original size:39 final size:39
Alignment explanation
Indices: 52979003--52979083 Score: 99
Period size: 39 Copynumber: 2.1 Consensus size: 39
52978993 CGTGGTATTT
* * * *
52979003 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAAGTCCGCAAGCCACATGCTG
* * *
52979042 GAAATATATCTGGACTTGAAGTCCGCAAGCCACGTGCTG
1 GAAATATATCCGGACATGAAGTCCGCAAGCCACATGCTG
52979081 GAA
1 GAA
52979084 TGGTGTACAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (39 bp):
GAAATATATCCGGACATGAAGTCCGCAAGCCACATGCTG
Found at i:52993007 original size:16 final size:16
Alignment explanation
Indices: 52992988--52993019 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
52992978 AATTGTTTTA
52992988 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
52993004 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
52993020 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:52993346 original size:50 final size:49
Alignment explanation
Indices: 52993281--52993607 Score: 248
Period size: 50 Copynumber: 6.5 Consensus size: 49
52993271 GGTACATGTT
* *
52993281 GTAGCTTGCACTTAGTACTACACACATGACTTAATCATCTTATACAAGTA
1 GTAGCCTGCACTTAGTACTACACACATGA-TTAATCATCTGATACAAGTA
* * * * * * *
52993331 GTATCCTACACTTAGTACTACACACGTGATTGAAGTTATCAGGTACGCA-TA
1 GTAGCCTGCACTTAGTACTACACACATGATT-AA-TCATCTGATAC-AAGTA
** * *
52993382 GTAGCCTGCACTTAGTACTACACATGTGATCT-ATCTATCTGGTACACGTA
1 GTAGCCTGCACTTAGTACTACACACATGAT-TAATC-ATCTGATACAAGTA
* * *
52993432 CTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTA
1 GTAGCCTGCACTTAGTACTACACACATGA-TTAATCATCTGATACAAGTA
* * * * * * *
52993482 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCA-TA
1 GTAGCCTGCACTTAGTACTACACACATGAT-TAA-TCATCTGATAC-AAGTA
*** * * * *
52993533 GTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAATCTGGTCCATGTA
1 GTAGCCTGCACTTAGTACTACACACATGA-TTAATC-ATCTGATACAAGTA
52993583 GTAGCCTGCACTTAGTACTACACAC
1 GTAGCCTGCACTTAGTACTACACAC
52993608 GTGACTCATA
Statistics
Matches: 221, Mismatches: 42, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
49 5 0.02
50 140 0.63
51 74 0.33
52 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (49 bp):
GTAGCCTGCACTTAGTACTACACACATGATTAATCATCTGATACAAGTA
Found at i:52993403 original size:101 final size:100
Alignment explanation
Indices: 52993281--52993512 Score: 254
Period size: 101 Copynumber: 2.3 Consensus size: 100
52993271 GGTACATGTT
* * * *
52993281 GTAGCTTGCACTTAGTACTACACACATGA-CTTAATC-ATCTTATACAAGTAGTATCCTACACTT
1 GTAGCCTGCACTTAGTACTACACACATGATC-T-ATCTATCTGATACAAGTACTAGCCTACACTT
* ** * *
52993344 AGTACTACACACGTGA-TTGAAGTTATCAGGTACGCATA
64 AGTACTACACACATGACTT-AA-CCATCAGATACACATA
** * * *
52993382 GTAGCCTGCACTTAGTACTACACATGTGATCTATCTATCTGGTACACGTACTAGCCTGCACTTAG
1 GTAGCCTGCACTTAGTACTACACACATGATCTATCTATCTGATACAAGTACTAGCCTACACTTAG
* *
52993447 TACTACACACATGACTTAACCATCTGATACACGTA
66 TACTACACACATGACTTAACCATCAGATACACATA
*
52993482 GTAGCCTGCACTTAGTACTACACACGTGATC
1 GTAGCCTGCACTTAGTACTACACACATGATC
52993513 GAAGTTAACG
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
100 43 0.39
101 65 0.59
102 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (100 bp):
GTAGCCTGCACTTAGTACTACACACATGATCTATCTATCTGATACAAGTACTAGCCTACACTTAG
TACTACACACATGACTTAACCATCAGATACACATA
Found at i:52993495 original size:151 final size:151
Alignment explanation
Indices: 52993222--52993613 Score: 588
Period size: 151 Copynumber: 2.6 Consensus size: 151
52993212 GAAGCTCTCT
* * * * *
52993222 GGTACGCATAGTAGCTTGCACTTAGTAATACACATGCCACCTATCAAGC-GGTACATGTTGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
* * * *
52993286 TTGCACTTAGTACTACACACATGACTTAATCATCTTATACAAGTAGTATCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTACACTTAGTACTA
* *
52993351 CACACGTGATTGAAGTTATCA
131 CACACGTGATCGAAGTTAACA
* * * * *
52993372 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCTATCTATCTGGTACACGTACTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
* *
52993437 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTACACTTAGTACTA
*
52993502 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACA
*
52993523 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTCCATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
*
52993588 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACATGACT
52993614 CATAATGGAT
Statistics
Matches: 215, Mismatches: 26, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
150 42 0.20
151 173 0.80
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
CTGCACTTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACA
Found at i:52993543 original size:101 final size:100
Alignment explanation
Indices: 52993380--52993611 Score: 295
Period size: 101 Copynumber: 2.3 Consensus size: 100
52993370 CAGGTACGCA
* * * * *
52993380 TAGTAGCCTGCACTTAGTACTACACATGTGATCTATCTATCTGGTACACGTACTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAATCTAACGGGTACACATACTAGCCTGCACTT
* * *
52993445 AGTACTACACACATGACTTAACCATCTGATACACG
66 AGTACTACACACACGACCTAACAATCTGATACACG
* *
52993480 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT-TAACGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATC-AA-TCTAACGGGTACACATACTAGCCTGCAC
** * * * *
52993544 TTAGTACTACACATGCGACCTATCAATCTGGTCCATG
64 TTAGTACTACACACACGACCTAACAATCTGATACACG
52993581 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
52993612 CTCATAATGG
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
100 32 0.28
101 81 0.71
102 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCAATCTAACGGGTACACATACTAGCCTGCACTT
AGTACTACACACACGACCTAACAATCTGATACACG
Found at i:52996310 original size:43 final size:43
Alignment explanation
Indices: 52996244--52996410 Score: 180
Period size: 43 Copynumber: 3.9 Consensus size: 43
52996234 AGCTCATAAA
* * *
52996244 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * *
52996286 ATGCCACTGTCCTAGACAGGGTCTTACATGAAATC-CAATAGT-G
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAC-ATA-TCG
* * *
52996329 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAGA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
52996372 ATGCCAATGTCCCAGACATGGTTTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
52996411 CTCGGTAACC
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 92 0.91
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:52996399 original size:86 final size:85
Alignment explanation
Indices: 52996244--52996406 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 85
52996234 AGCTCATAAA
* * * * * * *
52996244 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGACAGGGTC
1 ATGCCATATCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACAGGGTC
52996309 TTACATGAAATCCAATAGTG
66 TTACATGAAATCCAATAGTG
* *
52996329 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAGAATA-CAATGCCAATGTCCCAGACATGG
1 ATGCC-ATATCCCAGACATGGTCTTACACGTAATCA-AATATCAATGCCAATGTCCCAGACAGGG
* *
52996393 TTTTACATGTAATC
64 TCTTACATGAAATC
52996407 ACATCTCGGT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 5 0.08
86 57 0.88
87 3 0.05
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACAGGGTC
TTACATGAAATCCAATAGTG
Found at i:53001169 original size:48 final size:49
Alignment explanation
Indices: 53000994--53001169 Score: 245
Period size: 48 Copynumber: 3.7 Consensus size: 49
53000984 AGTACCAATT
* ** * *
53000994 CCATGTCCCCGACATGGTCTTACA-TGAATC-CACATATCATCATCAATG
1 CCATGTCCCAGACATGGTCTTACACT-AGGCACACATATCATCGTCGATG
53001042 CCATGTCCCAGACATGGTCTTACACT-GGCACACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGGCACACATATCATCGTCGATG
* *
53001090 CCATGTCCCAGACATGGTCTTAAACTA-GCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGGCACACATATCATCGTCGATG
53001138 CCATGTCCCAGACATGGTCTTACA-TAGGCACA
1 CCATGTCCCAGACATGGTCTTACACTAGGCACA
53001170 TTTAGCACGG
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 3 0.03
48 112 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.24
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTAGGCACACATATCATCGTCGATG
Found at i:53014707 original size:54 final size:54
Alignment explanation
Indices: 53014578--53014707 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 54
53014568 AGGATACCAA
* * * ** *
53014578 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATTGATAACTAATACAAGGCAAAGAAATCAT
* * * ** *
53014632 GTAAGACAATGTCAAGACATGGCATTGATAAACTAATATAAGGCAAAGATCTCCT
1 GTAAGACCATGCCAAGACATGGCATTGAT-AACTAATACAAGGCAAAGAAATCAT
*
53014687 GT-AGACCATGCCAAGTCATGG
1 GTAAGACCATGCCAAGACATGG
53014708 AAATGGTGAG
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 41 0.68
55 19 0.32
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (54 bp):
GTAAGACCATGCCAAGACATGGCATTGATAACTAATACAAGGCAAAGAAATCAT
Found at i:53014727 original size:52 final size:53
Alignment explanation
Indices: 53014669--53014772 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 53
53014659 ATAAACTAAT
* *
53014669 ATAAGGCAAAGAT-CTC-CTGTA-GACCATGCCAAGTCATGGAAATGGTGAGTTC
1 ATAAGGCAAAGATAC-CAC-GTAGGACCATGCCAAGACATGGAAATGGTAAGTTC
* *
53014721 ATAAGGCAAGGATACCACGTAGGACCATGTCAAGACATGGAAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAGGACCATGCCAAGACATGGAAATGGTAAGTT
53014773 TAAAAAGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
52 16 0.36
53 29 0.64
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAGGACCATGCCAAGACATGGAAATGGTAAGTTC
Found at i:53017917 original size:48 final size:48
Alignment explanation
Indices: 53017846--53018166 Score: 400
Period size: 48 Copynumber: 6.7 Consensus size: 48
53017836 TAAAGTACCA
*
53017846 ATGCCATGTCCTC-GACATGGTCTTACA-T-GAATCCACATATCATCGCTG
1 ATGCCATGTCC-CAGACATGGTCTTACACTGGCA--CACATATCATCGCTG
* * **
53017894 ATGCCACGTCACAGACATGGTCTTACACTGGCACACATATCATCATTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
* * * *
53017942 ATTCCATGTACCAGACATGGTCTTACACTGGCACACATATCATCCCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
* * *
53017990 ATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCATTGCCT-
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG-CTG
* * * *
53018038 ATGTCATGTCCCAGACGTGGTCTTGCACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
*
53018086 ATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCT-G
*
53018134 ATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA
53018167 TATTTACCAC
Statistics
Matches: 234, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
47 2 0.01
48 228 0.97
49 2 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
Found at i:53021509 original size:40 final size:40
Alignment explanation
Indices: 53021415--53021559 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
53021405 TACTCGAATG
* *
53021415 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
53021456 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
53021496 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
53021536 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
53021560 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:53027071 original size:40 final size:39
Alignment explanation
Indices: 53027027--53027266 Score: 239
Period size: 40 Copynumber: 6.1 Consensus size: 39
53027017 TGACTAGTTT
*
53027027 CGGGC-AAGTCCGAGGGCATTTGTGCGAGTTTGACTATATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAG-TT-ACTATATC
* *
53027067 CGGGCTAAGTCTCGTAAGGCA-TGGTGAGAGTTACTATATATC
1 CGGGCTAAGTC-CG-AAGGCATTTGTGCGAGTTAC--TATATC
*
53027109 CGGGCTAAGTCCGCGAAGGCATTTGTACGAG-TACTATAT-
1 CGGGCTAAGT-C-CGAAGGCATTTGTGCGAGTTACTATATC
53027148 CGGGCTATAGTCCCGAAGGGCATTTGTGCGAGTTACTATA-C
1 CGGGCTA-AGT-CCGAA-GGCATTTGTGCGAGTTACTATATC
*
53027189 CGGGCTAA-TCCGAAGGCATTTGTTGGCGAGTTACTAT-CC
1 CGGGCTAAGTCCGAAGGCATTTG-T-GCGAGTTACTATATC
53027228 CGGGCTAAGTCCGAAGGCATTTG-GC-AG-TAGCTATATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTA-CTATATC
53027265 CG
1 CG
53027267 CTAAAACCCG
Statistics
Matches: 174, Mismatches: 9, Indels: 37
0.79 0.04 0.17
Matches are distributed among these distances:
35 2 0.01
36 6 0.03
37 13 0.07
38 6 0.03
39 33 0.19
40 45 0.26
41 21 0.12
42 34 0.20
43 14 0.08
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:53027128 original size:42 final size:41
Alignment explanation
Indices: 53027061--53027187 Score: 113
Period size: 42 Copynumber: 3.0 Consensus size: 41
53027051 CGAGTTTGAC
*
53027061 TATATCCGGGCTAAGTCTCG-TAAGGCATGGTGAGAGTTACTA
1 TATATCCGGGCTAAGTC-CGCGAAGGCAT-GTGAGAGTTACTA
*
53027103 TATATCCGGGCTAAGTCCGCGAAGGCATTTGTACGAG-TAC--
1 TATATCCGGGCTAAGTCCGCGAAGGCATGTG-A-GAGTTACTA
*
53027143 TATAT-CGGGCTATAGTCC-CGAAGGGCATTTGTGCGAGTTACTA
1 TATATCCGGGCTA-AGTCCGCGAA-GGCA--TGTGAGAGTTACTA
53027186 TA
1 TA
53027188 CCGGGCTAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
39 11 0.15
40 17 0.24
41 7 0.10
42 31 0.44
43 5 0.07
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (41 bp):
TATATCCGGGCTAAGTCCGCGAAGGCATGTGAGAGTTACTA
Found at i:53038755 original size:36 final size:38
Alignment explanation
Indices: 53038721--53038832 Score: 131
Period size: 40 Copynumber: 2.9 Consensus size: 38
53038711 TTCAAAATGC
*
53038721 TCGGACATAGCCCGTTATAGTAACTCGCACAAATGCCT
1 TCGGACTTAGCCCGTTATAGTAACTCGCACAAATGCCT
*
53038759 TCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCT
1 TC-GGACTTAGCCC-G-TTATAGTAACTCGCACAAATGCCT
* * *
53038799 TCGG-CTTAGCCCG-AATTGTATCTCGCACAAATGC
1 TCGGACTTAGCCCGTTATAGTAACTCGCACAAATGC
53038833 TCGGCTTACC
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
36 17 0.27
37 1 0.02
38 9 0.14
39 11 0.17
40 24 0.38
41 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (38 bp):
TCGGACTTAGCCCGTTATAGTAACTCGCACAAATGCCT
Found at i:53038783 original size:40 final size:37
Alignment explanation
Indices: 53038738--53038869 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 37
53038728 TAGCCCGTTA
*
53038738 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GG-CTTAACCC-GAAT
*
53038778 TAGTAACTCGCACAAATGCCTTCGGCTTAGCCCGAAT
1 TAGTAACTCGCACAAATGCCTTCGGCTTAACCCGAAT
*
53038815 T-GTATCTCGCACAAATG-C-TCGGCTT-ACCCGAAT
1 TAGTAACTCGCACAAATGCCTTCGGCTTAACCCGAAT
53038848 TAGT-ACTCTGC-C-AATGCCTTCG
1 TAGTAACTC-GCACAAATGCCTTCG
53038870 ATCTTAGTCG
Statistics
Matches: 83, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
32 4 0.05
33 13 0.16
34 14 0.17
35 1 0.01
36 15 0.18
37 4 0.05
38 7 0.08
39 2 0.02
40 23 0.28
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
TAGTAACTCGCACAAATGCCTTCGGCTTAACCCGAAT
Found at i:53039838 original size:205 final size:205
Alignment explanation
Indices: 53039483--53039881 Score: 652
Period size: 205 Copynumber: 1.9 Consensus size: 205
53039473 AATCACTAGT
53039483 AAAGCATCCTCTCCCTTTCCCATCAATTTAACACACATGCATTGCTCATTAACATACAAAAAGTT
1 AAAGCATCCTCTCCCTTTCCCATCAATTTAACACACATGCATTGCTCATTAACATACAAAAAGTT
53039548 ATTTCGCTTAGCACACAACTTGCTAGCCGATTCTTCCCATCTAGAAACCATGCACTATGTGCTCA
66 ATTTCGCTTAG-ACACAACTTGCTAGCCGATTCTTCCCATCTAGAAACCATGCACTATGTGCTCA
53039613 CTCAAAAAATGCTAAAAAGAGATGTCAAGAATCATCAATCCACCATCACATGCATCATTAACAAG
130 CTCAAAAAATGCTAAAAAGAGA--TCAAGAATCATCAATCCACCATCACATGCATCATTAACAAG
53039678 CCTTTTAATGGCG
193 CCTTTTAATGGCG
53039691 AAAGCATCCTCTCCCTTT-CCATCAATTT-A-ACACATGCATTGCTCATTAACATAC-AAAAGTT
1 AAAGCATCCTCTCCCTTTCCCATCAATTTAACACACATGCATTGCTCATTAACATACAAAAAGTT
*
53039752 ATATTCGGCCTTAG-CACAACTTGCTAGCCGATTCTTTCCC-TC-AGCAACCAATGCACATATGT
66 AT-TTC-G-CTTAGACACAACTTGCTAGCCGATTC-TTCCCATCTAGAAACC-ATGCAC-TATGT
53039814 GCTCACTC-AAAAATGCTAAAAAGAGATCAAGAATCATCAATCCACCATCACATGCATCATTAAC
125 GCTCACTCAAAAAATGCTAAAAAGAGATCAAGAATCATCAATCCACCATCACATGCATCATTAAC
53039878 AAGC
190 AAGC
53039882 TTCATATTTA
Statistics
Matches: 184, Mismatches: 1, Indels: 17
0.91 0.00 0.08
Matches are distributed among these distances:
203 42 0.23
204 15 0.08
205 74 0.40
206 20 0.11
207 15 0.08
208 18 0.10
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.27
Consensus pattern (205 bp):
AAAGCATCCTCTCCCTTTCCCATCAATTTAACACACATGCATTGCTCATTAACATACAAAAAGTT
ATTTCGCTTAGACACAACTTGCTAGCCGATTCTTCCCATCTAGAAACCATGCACTATGTGCTCAC
TCAAAAAATGCTAAAAAGAGATCAAGAATCATCAATCCACCATCACATGCATCATTAACAAGCCT
TTTAATGGCG
Found at i:53046856 original size:79 final size:77
Alignment explanation
Indices: 53046754--53046977 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 77
53046744 GCTCCTCGTT
* *
53046754 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
53046819 ATTTAGTAACTCGCA
64 A-TTAGTAACTCGCA
* *
53046834 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
53046897 GATTAGTATCTCGCA
63 GATTAGTAACTCGCA
* * * * *
53046912 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
53046976 GA
63 GA
53046978 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
78 31 0.25
79 66 0.53
80 26 0.21
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TAGTAACTCGCA
Found at i:53046871 original size:39 final size:39
Alignment explanation
Indices: 53046754--53046977 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 39
53046744 GCTCCTCGTT
* *
53046754 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGT-ATCTCGCA
* *
53046794 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTATCTCGCA
53046834 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTATCTCGCA
*
53046873 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTATCTCGCA
* * *
53046912 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGT-ATC-TCGCA
53046953 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
53046978 CATCATTCAA
Statistics
Matches: 165, Mismatches: 10, Indels: 18
0.85 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 76 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
Found at i:53054453 original size:28 final size:28
Alignment explanation
Indices: 53054385--53054482 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
53054375 CCTGAGATTG
* * * *
53054385 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
53054414 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
53054442 GCACTAAGTGTGCGAG-CTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
53054469 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
53054483 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:53054493 original size:27 final size:27
Alignment explanation
Indices: 53054413--53054495 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
53054403 TAAATTGTAC
* *
53054413 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTGAATATAT
*
53054441 AGCACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGCTGAATATAT
* *
53054468 AGCACTGAGTGTGCG-GACTTAATATAT
1 AGCACTAAGTGTGCGAG-CTGAATATAT
53054495 A
1 A
53054496 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 32 0.64
28 17 0.34
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGAATATAT
Found at i:53062336 original size:27 final size:28
Alignment explanation
Indices: 53062252--53062349 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
53062242 CATGAGATTG
* * * *
53062252 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
53062281 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
53062309 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
53062336 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
53062350 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:53062360 original size:27 final size:27
Alignment explanation
Indices: 53062280--53062362 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
53062270 TAAATTGTAC
* *
53062280 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
53062308 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
53062335 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
53062362 A
1 A
53062363 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:53062363 original size:29 final size:27
Alignment explanation
Indices: 53062252--53062363 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
53062242 CATGAGATTG
** * *
53062252 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
53062281 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
53062309 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
53062336 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
53062364 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:53070194 original size:27 final size:28
Alignment explanation
Indices: 53070110--53070207 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
53070100 CCTGAGATTG
* * * *
53070110 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
53070139 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
53070167 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
53070194 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
53070208 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:53070218 original size:27 final size:27
Alignment explanation
Indices: 53070138--53070220 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
53070128 TAAATTGTAC
* *
53070138 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
53070166 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
53070193 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
53070220 A
1 A
53070221 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:53070221 original size:29 final size:27
Alignment explanation
Indices: 53070110--53070221 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
53070100 CCTGAGATTG
** * *
53070110 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
53070139 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
53070167 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
53070194 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
53070222 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:53072049 original size:45 final size:45
Alignment explanation
Indices: 53072000--53072108 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 45
53071990 GTATTTTTGA
* *
53072000 GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTCAT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACAT
* *
53072045 GTAAGACCACGTCTGGGACGTTGGGATCGATATATGTGGTTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACAT
* *
53072090 GTAATACCATGTCTGGGAC
1 GTAAGACCACGTCTGGGAC
53072109 ATCAATATTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (45 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACAT
Found at i:53080086 original size:45 final size:45
Alignment explanation
Indices: 53080023--53080198 Score: 239
Period size: 45 Copynumber: 4.0 Consensus size: 45
53080013 TAGGACTTTG
* * * *
53080023 ATATGTATTTTTGAGTAAGACCACGTCTGGGACGTTGGCATTGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
53080068 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCG--
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
53080111 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * * *
53080156 ATATGTGGTTACGTGTAAAACCATGTCTGGGACATCGGCATCG
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG
53080199 TATTAGATTC
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 42 0.36
45 75 0.64
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:53080129 original size:43 final size:43
Alignment explanation
Indices: 53080022--53080280 Score: 222
Period size: 45 Copynumber: 6.0 Consensus size: 43
53080012 ATAGGACTTT
* * * *
53080022 GATATGTATTTTTGAGTAAGACCACGTCTGGGACGTTGGCATT
1 GATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
*
53080065 GATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATC
1 G--ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
53080110 GATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
* * * * * *
53080153 GATATATGTGGTTACGTGTAAAACCATGTCTGGGACATCGGCATC
1 G--ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
53080198 G-TAT-TAG-ATTCGAGGAAGACC-CTGTCTGGGATAG-TGGCATC
1 GATATGT-GTTTTCGTGTAAGACCAC-GTCTGGGA-CGTTGGCATC
* * ** * * *
53080239 GATATGAGATGGCATGTAAAACCACGTCTGGGATGTTGGCAT
1 GATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
53080281 TGTATGACAT
Statistics
Matches: 174, Mismatches: 30, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
41 25 0.14
42 9 0.05
43 64 0.37
44 1 0.01
45 75 0.43
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:53080171 original size:88 final size:88
Alignment explanation
Indices: 53080022--53080243 Score: 281
Period size: 88 Copynumber: 2.5 Consensus size: 88
53080012 ATAGGACTTT
* * * * *
53080022 GATATGTATTTTTGAGTAAGACCACGTCTGGGACGTTGGCATTGATATATGTGTTTTCGTGTAAG
1 GATATGTATTTTCGAGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAA
* *
53080087 ACCATGTCTGGGACGTTGGCATC
66 ACCATGTCTGGGACATCGGCATC
* *
53080110 GATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAA
1 GATATGTATTTTCGAGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAA
53080175 ACCATGTCTGGGACATCGGCATC
66 ACCATGTCTGGGACATCGGCATC
** * *
53080198 G-TAT-TAGATTCGAGGAAGACC-CTGTCTGGGATAG-TGGCATCGATAT
1 GATATGTATTTTCGAGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATAT
53080244 GAGATGGCAT
Statistics
Matches: 117, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
85 1 0.01
86 32 0.27
87 4 0.03
88 80 0.68
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (88 bp):
GATATGTATTTTCGAGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAA
ACCATGTCTGGGACATCGGCATC
Found at i:53080681 original size:17 final size:17
Alignment explanation
Indices: 53080659--53080693 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
53080649 TGAAATTGCA
53080659 AGTTTGATACTAAATGG
1 AGTTTGATACTAAATGG
53080676 AGTTTGATACTAAATGG
1 AGTTTGATACTAAATGG
53080693 A
1 A
53080694 ATTAAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (17 bp):
AGTTTGATACTAAATGG
Found at i:53083100 original size:33 final size:33
Alignment explanation
Indices: 53083058--53083129 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
53083048 ATACATAAGA
53083058 GTAACATCAACCATGACTACAAGGTAGTGCATT
1 GTAACATCAACCATGACTACAAGGTAGTGCATT
*
53083091 GTAACATCAACCATGACTACGAGGTAGTGCATT
1 GTAACATCAACCATGACTACAAGGTAGTGCATT
53083124 -TAACAT
1 GTAACAT
53083130 AGCTCTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.16
33 32 0.84
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (33 bp):
GTAACATCAACCATGACTACAAGGTAGTGCATT
Found at i:53083867 original size:50 final size:51
Alignment explanation
Indices: 53083791--53083918 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
53083781 TGCTAAAGAT
53083791 ATAGTAGCCTGCACTTAGTACTACACACGTGA-CCACA-TCATCTGA-TACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGTGATCCA-AGTCAT-TGAGTACAC
* *
53083841 TTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGTGATCCAAGTCATTGAGTACAC
* *
53083892 ATAGCAGCATGCACTTAGTACTACACA
1 ATAGTAGCCTGCACTTAGTACTACACA
53083919 GGCAACTTAA
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
50 35 0.50
51 35 0.50
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (51 bp):
ATAGTAGCCTGCACTTAGTACTACACACGTGATCCAAGTCATTGAGTACAC
Found at i:53088016 original size:22 final size:21
Alignment explanation
Indices: 53087986--53088026 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
53087976 GTTGAAATGT
*
53087986 CACACGGGCGTGTTGCCCTTCC
1 CACACGGGCCTG-TGCCCTTCC
*
53088008 CACATGGGCCTGTGCCCTT
1 CACACGGGCCTGTGCCCTT
53088027 GTGTTAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.10, C:0.39, G:0.27, T:0.24
Consensus pattern (21 bp):
CACACGGGCCTGTGCCCTTCC
Found at i:53089526 original size:34 final size:33
Alignment explanation
Indices: 53089488--53089551 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
53089478 TAGCAATAGC
53089488 AGTCTGGGCCTGAGCCCATTTCAGTAACAGTGGT
1 AGTCTGGGCCTGAGCCCATTTCAGT-ACAGTGGT
* *
53089522 AGTCTGGGCCTTAGCCCATTTTAGTACAGT
1 AGTCTGGGCCTGAGCCCATTTCAGTACAGT
53089552 ATGCACACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (33 bp):
AGTCTGGGCCTGAGCCCATTTCAGTACAGTGGT
Found at i:53091345 original size:20 final size:20
Alignment explanation
Indices: 53091316--53091360 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
53091306 AAAAGGGACA
*
53091316 CCCACCTACGACACCACACT
1 CCCACCTACGACACAACACT
* *
53091336 CCCACTTACGGCACAACACT
1 CCCACCTACGACACAACACT
*
53091356 TCCAC
1 CCCAC
53091361 ACTTCTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.51, G:0.07, T:0.13
Consensus pattern (20 bp):
CCCACCTACGACACAACACT
Found at i:53097457 original size:34 final size:34
Alignment explanation
Indices: 53097414--53097486 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
53097404 TTAACCCATC
*
53097414 TTTCAGTAACAGTAGCAGTTTAGGCCTGAGCCCA
1 TTTCAGTAACAGTAGCAGTCTAGGCCTGAGCCCA
* * *
53097448 TTTCAGTAACAGTGGCAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAGCAGTCTAGGCCTGAGCCCA
53097482 TTTCA
1 TTTCA
53097487 TTACACTATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAGTCTAGGCCTGAGCCCA
Found at i:53104724 original size:40 final size:40
Alignment explanation
Indices: 53104669--53104809 Score: 237
Period size: 40 Copynumber: 3.5 Consensus size: 40
53104659 TTGGCTCGGA
* * * *
53104669 TATAACAACCAGCACGAATGCCTTCAGGACTTAACCCAGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
53104709 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
53104749 TATAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
53104789 TATAATAACCCGCACGAATGC
1 TATAATAACCCGCACGAATGC
53104810 TATGCACATA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:53108759 original size:40 final size:39
Alignment explanation
Indices: 53108688--53108773 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
53108678 TAATGACTTA
* **
53108688 TCGGCTAAAATGGCTCTTAGTGTGCGGTTTGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCT
* *
53108727 TCGGCTAAAAGTGGCACTTAGTGTTCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTTGAAATAGCT
53108767 TCGGCTA
1 TCGGCTA
53108774 CATATATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 10 0.24
40 31 0.76
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCT
Found at i:53110008 original size:54 final size:54
Alignment explanation
Indices: 53109949--53110060 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
53109939 TACTGAAATG
* *
53109949 CCCTCAAATTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTATTGTTTTA
1 CCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACTGTTTTA
* * *** *
53110003 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACTGTTTTA
53110057 CCCT
1 CCCT
53110061 TGATTTTTAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (54 bp):
CCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACTGTTTTA
Found at i:53110104 original size:27 final size:27
Alignment explanation
Indices: 53109974--53110104 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
53109964 ATTACCAAAG
* *
53109974 TACCCTCAATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* **
53110001 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
53110028 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
53110055 TACCCTTGATTTTTAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
53110082 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
53110105 ATAATACCCT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:53110113 original size:54 final size:54
Alignment explanation
Indices: 53110009--53110132 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
53109999 TTTACCCTCA
* * * **
53110009 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
* **
53110063 ATTTTTAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
* * *
53110117 GTTTACAAAATTACCA
1 ATTTATAGAATTACCA
53110133 AAATACCCTC
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (54 bp):
ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
Done.