Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 161 of 332
Found at i:53110121 original size:27 final size:27
Alignment explanation
Indices: 53110082--53110410 Score: 132
Period size: 27 Copynumber: 12.1 Consensus size: 27
53110072 ATTACTGTTT
* *
53110082 TACCCTCGATTTACAAAATTACTATAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
53110109 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
53110136 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * ** * *
53110163 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* ** *
53110189 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
* * **
53110216 TACACTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
53110243 TACCCT-AAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *** * *
53110270 TACCACTAG-TTTGTGAAATTATCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
** **
53110297 TACCCTAAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
53110324 TACCC-CTAATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
* * ***
53110351 AACCCTTGACTTT-CTAAAAATTATGGAAA
1 TACCCTCGA-TTTAC--AAAATTACCAAAA
* * * *
53110380 TACCATCGGTTCACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
53110407 TACC
1 TACC
53110411 TTTGGTTTGT
Statistics
Matches: 235, Mismatches: 52, Indels: 30
0.74 0.16 0.09
Matches are distributed among these distances:
26 25 0.11
27 187 0.80
28 8 0.03
29 15 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:53110129 original size:81 final size:81
Alignment explanation
Indices: 53109982--53110130 Score: 190
Period size: 81 Copynumber: 1.8 Consensus size: 81
53109972 AGTACCCTCA
* * * ** * *
53109982 ATTTATAGAATTATTGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
1 ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCATAATACCCTCGATTTACAAAAT
53110047 TACTGTTTTACCCTTG
66 TACTGTTTTACCCTTG
* * * * *
53110063 ATTTTTAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATAATACCCTTGGTTTACAAAAT
1 ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCATAATACCCTCGATTTACAAAAT
53110128 TAC
66 TAC
53110131 CAAAATACCC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (81 bp):
ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCATAATACCCTCGATTTACAAAAT
TACTGTTTTACCCTTG
Found at i:53110140 original size:81 final size:81
Alignment explanation
Indices: 53109961--53110142 Score: 184
Period size: 81 Copynumber: 2.2 Consensus size: 81
53109951 CTCAAATTGT
* * * *
53109961 AAAATTACCAAAGTACCCTCAATTTATAGAATTATTGTTTTACCCTCAATTTATAGAATTACCAT
1 AAAATTACCAAAATACCCTCAATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCAT
** *
53110026 TTTACCCTCGATTTAT
66 AATACCCTCGATTTAC
* ***** ** * * *
53110042 AGAATTACTGTTTTACCCTTGATTTTTAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAT
1 AAAATTACCAAAATACCCTCAATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCAT
* *
53110107 AATACCCTTGGTTTAC
66 AATACCCTCGATTTAC
53110123 AAAATTACCAAAATACCCTC
1 AAAATTACCAAAATACCCTC
53110143 GATCAGTAAA
Statistics
Matches: 75, Mismatches: 26, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCAT
AATACCCTCGATTTAC
Found at i:53110296 original size:81 final size:80
Alignment explanation
Indices: 53110148--53110328 Score: 272
Period size: 81 Copynumber: 2.2 Consensus size: 80
53110138 CCCTCGATCA
* * * *
53110148 GTAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCG
1 GTAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCG
*
53110213 AAATACACTCAATTT
66 AAATACACTAAATTT
* * *
53110228 GTAAAATTACCAAAATACCCTAAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTATC
1 GTAAAATTACCAAAATACCCT-AGTCTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACC
*
53110293 GAAATACCCTAAATTT
65 GAAATACACTAAATTT
53110309 GTAAAATTACCAAAATACCC
1 GTAAAATTACCAAAATACCC
53110329 CTAATTTACA
Statistics
Matches: 91, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 21 0.23
81 70 0.77
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCG
AAATACACTAAATTT
Found at i:53110327 original size:54 final size:54
Alignment explanation
Indices: 53110123--53110327 Score: 238
Period size: 54 Copynumber: 3.8 Consensus size: 54
53110113 CTTGGTTTAC
* ** *
53110123 AAAATTACCAAAATACCCT-CGATCAGTAAAATTACCAAAATACC-CTAGTCTGT
1 AAAATTACCAAAATACCCTAAG-TTTGTAAAATTACCAAAATACCACTAGTTTGT
* * * * *
53110176 AAAATTGCTAAAATACCCCT-GGTTTGTAAAATTACCGAAATA-CACTCAATTTGT
1 AAAATTACCAAAATA-CCCTAAGTTTGTAAAATTACCAAAATACCACT-AGTTTGT
53110230 AAAATTACCAAAATACCCTAAGTTTGTAAAATTACCAAAATACCACTAGTTTGT
1 AAAATTACCAAAATACCCTAAGTTTGTAAAATTACCAAAATACCACTAGTTTGT
* * * *
53110284 GAAATTATCGAAATACCCTAAATTTGTAAAATTACCAAAATACC
1 AAAATTACCAAAATACCCTAAGTTTGTAAAATTACCAAAATACC
53110328 CCTAATTTAC
Statistics
Matches: 130, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 36 0.28
54 89 0.68
55 4 0.03
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTAAGTTTGTAAAATTACCAAAATACCACTAGTTTGT
Found at i:53110356 original size:54 final size:52
Alignment explanation
Indices: 53110118--53110349 Score: 177
Period size: 54 Copynumber: 4.3 Consensus size: 52
53110108 ATACCCTTGG
** ** *
53110118 TTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACC-CTAG
1 TTTAC-AAATTA-CAAAATACCCTAAATTTGTAAAATTACCAAAATACCACTAA
* ** *
53110171 TCTGTA-AAATTGCTAAAATACCCCT-GGTTTGTAAAATTACCGAAATA-CACTCAA
1 T-T-TACAAATTAC-AAAATA-CCCTAAATTTGTAAAATTACCAAAATACCACT-AA
* *
53110225 TTTGTA-AAATTACCAAAATACCCTAAGTTTGTAAAATTACCAAAATACCACTAG
1 -TT-TACAAATTA-CAAAATACCCTAAATTTGTAAAATTACCAAAATACCACTAA
** * *
53110279 TTTGTGAAATTATCGAAATACCCTAAATTTGTAAAATTACCAAAATACCCCTAA
1 TTT-ACAAATTA-CAAAATACCCTAAATTTGTAAAATTACCAAAATACCACTAA
53110333 TTTACAAAGTTACAAAA
1 TTTACAAA-TTACAAAA
53110350 AAACCCTTGA
Statistics
Matches: 147, Mismatches: 19, Indels: 26
0.77 0.10 0.14
Matches are distributed among these distances:
52 3 0.02
53 45 0.31
54 91 0.62
55 8 0.05
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.29
Consensus pattern (52 bp):
TTTACAAATTACAAAATACCCTAAATTTGTAAAATTACCAAAATACCACTAA
Found at i:53110499 original size:26 final size:27
Alignment explanation
Indices: 53110480--53110541 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
53110470 TAGGTAAATA
53110480 GACCGTAAAGCCCCTGTAGGATAAAGT
1 GACCGTAAAGCCCCTGTAGGATAAAGT
* *
53110507 GACCGTAAAGCCCCTGTAGGGTAGAGT
1 GACCGTAAAGCCCCTGTAGGATAAAGT
53110534 GACCGTAA
1 GACCGTAA
53110542 TACCCTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.18
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGATAAAGT
Found at i:53110504 original size:27 final size:26
Alignment explanation
Indices: 53110470--53110563 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 26
53110460 ATACCCTTAT
53110470 TAGGTAAA-TAGACCGTAAAGCCCCTG
1 TAGGTAAAGT-GACCGTAAAGCCCCTG
53110496 TAGGATAAAGTGACCGTAAAGCCCCTG
1 TAGG-TAAAGTGACCGTAAAGCCCCTG
* *
53110523 TAGGGTAGAGTGACCGTAATA-CCCTTG
1 TA-GGTAAAGTGACCGTAA-AGCCCCTG
*
53110550 TATGGTAAAATGAC
1 TA-GGTAAAGTGAC
53110564 GAATTTTCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.07
27 51 0.86
28 4 0.07
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (26 bp):
TAGGTAAAGTGACCGTAAAGCCCCTG
Found at i:53111460 original size:25 final size:26
Alignment explanation
Indices: 53111363--53111485 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
53111353 GAGGAAGTGC
*
53111363 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
53111389 AAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
53111415 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
53111441 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
53111466 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
53111486 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.37
26 57 0.63
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:53111822 original size:31 final size:31
Alignment explanation
Indices: 53111745--53111857 Score: 119
Period size: 31 Copynumber: 3.7 Consensus size: 31
53111735 CGTTTACAAT
* *
53111745 AAAGGCTTTGGCCCAATGATATGATTAATGA
1 AAAGGCTTCGGCCCAGTGATATGATTAATGA
* *
53111776 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTAATGA
* *
53111807 AAAGTCTTCGGCCCAGT-A-ACCG-TTAAATG-
1 AAAGGCTTCGGCCCAGTGATA-TGATT-AATGA
53111836 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
53111858 TCAAGACTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
29 21 0.30
30 6 0.09
31 42 0.61
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTAATGA
Found at i:53114136 original size:54 final size:54
Alignment explanation
Indices: 53114078--53114277 Score: 256
Period size: 54 Copynumber: 3.7 Consensus size: 54
53114068 TACTGAAATG
* * ***
53114078 CCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
* * * *
53114132 CCCTCGATTTATAGAATTACCATTTTACCCCCGATTTACAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
* * *
53114186 CCCTCAATTTATATAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
* * * *
53114240 CCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTA
53114278 CAAAATTATT
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 128 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
Found at i:53114286 original size:27 final size:27
Alignment explanation
Indices: 53114103--53114277 Score: 278
Period size: 27 Copynumber: 6.5 Consensus size: 27
53114093 ATTACCAAAG
53114103 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
53114130 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
53114157 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
53114184 TACCCTCAATTTATATAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
53114211 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
53114238 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
53114265 TACCCTCGATTTA
1 TACCCTCGATTTA
53114278 CAAAATTATT
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:53114295 original size:27 final size:27
Alignment explanation
Indices: 53114090--53114646 Score: 133
Period size: 27 Copynumber: 20.6 Consensus size: 27
53114080 CTCAAATTGT
* *
53114090 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
53114117 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
53114144 AGAATTACCATTTTACCCCCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *** * *
53114171 AGAATTACCATTTTACCCTCAATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **** *
53114198 ATAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **** *
53114225 AGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* * ****
53114252 AGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** * *
53114279 AAAATTATTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
53114306 AAAATTACCAAAATACCCTTGA-TCAGT
1 AAAATTACCAAAATACCCTCGATTTA-C
* * **
53114333 AAAATTACCAAGATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* * * * **
53114360 AAAATTACTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * **
53114387 AAAATTACCAAAATACCC-CTAACTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* **
53114414 AAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * * * **
53114441 GAAATTATCGAAATACTCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * * * *
53114468 AGAATTATCGAAATACCCTTG--TAAGGT
1 AAAATTACCAAAATACCCTCGATTTA--C
* * * **
53114495 AAATTTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * **
53114522 AAAATTAACAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* **
53114549 AAAATTACCAAAATACCACT-GGTTTGT
1 AAAATTACCAAAATACC-CTCGATTTAC
* * * * **
53114576 GAAATTATCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
*
53114603 AAAATTACGAAAATACCC-CTGATTTAC
1 AAAATTACCAAAATACCCTC-GATTTAC
*
53114630 AAAGTTA-CAGAAATACC
1 AAAATTACCA-AAATACC
53114647 TTTGACTTTT
Statistics
Matches: 427, Mismatches: 87, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.00
26 8 0.02
27 415 0.97
28 2 0.00
29 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:53114296 original size:81 final size:81
Alignment explanation
Indices: 53114103--53114315 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 81
53114093 ATTACCAAAG
* * * ***
53114103 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCCCGATT
1 TACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCCCGATT
53114168 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* * **** * *
53114184 TACCCTCAATTTATATAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCCCGATT
* * *
53114249 TATAGAATTATCGTTT
66 TACAGAATTACCATTT
* ** * * * *
53114265 TACCCTCGATTTACAAAATTATTAAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCA
53114316 AAATACCCTT
Statistics
Matches: 110, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 110 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCCCGATT
TACAGAATTACCATTT
Found at i:53114337 original size:54 final size:54
Alignment explanation
Indices: 53114279--53114623 Score: 239
Period size: 54 Copynumber: 6.4 Consensus size: 54
53114269 CTCGATTTAC
** * **
53114279 AAAATTATTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATCAGT
* * * * **
53114333 AAAATTACCAAGATACCCCTGGTTTGTAAAATTACTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATCAGT
*** **
53114387 AAAATTACCAAAATACCCCTAACTTGTAAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATCAGT
* * * * ** * * * *
53114441 GAAATTATCGAAATA-CTCTCAATTTGTAGAATTATCGAAATACCCTTG-TAAGGT
1 AAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGATCA-GT
* * ** * * **
53114495 AAATTTACCGAAATA-CCCTCAATTTGTAAAATTAACAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGA-TCAGT
* * * * ** **
53114549 AAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATCAGT
*
53114603 AAAATTACGAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
53114624 ATTTACAAAG
Statistics
Matches: 235, Mismatches: 50, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
53 4 0.02
54 226 0.96
55 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATCAGT
Found at i:53114440 original size:81 final size:80
Alignment explanation
Indices: 53114265--53114620 Score: 288
Period size: 81 Copynumber: 4.4 Consensus size: 80
53114255 ATTATCGTTT
** * * ** * *
53114265 TACCCTCGATTTACAAAATTATTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATC
1 TACCCTCGATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAAT-
* *
53114330 AGTAAAATTACCAAGA
65 TGTAAAATTACCAAAA
* * *
53114346 TACCC-CTGGTTTGTAAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAATACCCCTAAC
1 TACCCTC-GATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAA-
53114410 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* * * * * * * * * *
53114427 TACCCTTGATTTGTGAAATTA-TCGAAATACTCTCAATTTGTAGAATTATCGAAATACCCTTGTA
1 TACCCTCGATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAATACCC--CTA
* * *
53114491 A-GGTAAATTTACCGAAA
63 ATTGTAAAATTACCAAAA
* * * **
53114508 TACCCTCAATTTGTAAAATTAAC-AAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TACCCTCGATTTGTAAAATT-ACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-AA
* * *
53114572 TTGTGAAATTATCGAAA
64 TTGTAAAATTACCAAAA
* *
53114589 TACCCTCAATTTGTAAAATTACGAAAATACCC
1 TACCCTCGATTTGTAAAATTACTAAAATACCC
53114621 CTGATTTACA
Statistics
Matches: 218, Mismatches: 46, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
79 1 0.00
80 4 0.02
81 208 0.95
82 2 0.01
83 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (80 bp):
TACCCTCGATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATT
GTAAAATTACCAAAA
Found at i:53114698 original size:27 final size:26
Alignment explanation
Indices: 53114655--53114710 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
53114645 CCTTTGACTT
53114655 TTTAAAAATTATGGAAATACCATTGG
1 TTTAAAAATTATGGAAATACCATTGG
*
53114681 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTA-AAAATTA-TGGAAATACCATTGG
53114708 TTT
1 TTT
53114711 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
TTTAAAAATTATGGAAATACCATTGG
Found at i:53114794 original size:27 final size:27
Alignment explanation
Indices: 53114771--53114850 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
53114761 TTAGGTATAA
53114771 AGACCGTAAAGCCCCTGTAGGGTAAAG
1 AGACCGTAAAGCCCCTGTAGGGTAAAG
53114798 AGACCGTAAAGCCCCTGTAGGGTAAAG
1 AGACCGTAAAGCCCCTGTAGGGTAAAG
* * *
53114825 TGACCGTAATA-CCCTTGTATGGTAAA
1 AGACCGTAA-AGCCCCTGTAGGGTAAA
53114851 ATGATGAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
AGACCGTAAAGCCCCTGTAGGGTAAAG
Found at i:53115678 original size:26 final size:26
Alignment explanation
Indices: 53115649--53115743 Score: 104
Period size: 25 Copynumber: 3.7 Consensus size: 26
53115639 GGAAGTGCAA
*
53115649 AAGGGCTTATGCCCTAGTTTATTGAG
1 AAGGGCTTATGCCCCAGTTTATTGAG
*
53115675 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAG
** * ** *
53115701 AAAAGATT-TGCCCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTATTGAG
53115726 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
53115744 ATTAAAAGAG
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
25 30 0.51
26 29 0.49
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTATTGAG
Found at i:53115718 original size:25 final size:25
Alignment explanation
Indices: 53115684--53115750 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
53115674 GAAGGGCTTA
53115684 TGCCCCAGTTTATTGAAAAAAGATT
1 TGCCCCAGTTTATTGAAAAAAGATT
** ** *
53115709 TGCCCCAGTTTACCGAAAAGGGCTT
1 TGCCCCAGTTTATTGAAAAAAGATT
53115734 TGCCCCAG-TTATT-AAAA
1 TGCCCCAGTTTATTGAAAA
53115751 GAGGCTAGGC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
23 4 0.11
24 3 0.09
25 28 0.80
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (25 bp):
TGCCCCAGTTTATTGAAAAAAGATT
Found at i:53115948 original size:42 final size:42
Alignment explanation
Indices: 53115889--53115976 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
53115879 TAGTCTCCCC
* ** *
53115889 AAATGGGCTTCAATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTCAATACATCCATTGACATTACATGTGATATTG
53115931 AAATGGGCTTGC-ATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTT-CAATACATCCATTGACATTACATGTGATATTG
53115973 AAAT
1 AAAT
53115977 AGGCCTAAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTCAATACATCCATTGACATTACATGTGATATTG
Found at i:53116081 original size:31 final size:31
Alignment explanation
Indices: 53116004--53116082 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
53115994 CGTTTACAAT
* *
53116004 AAAGGCTTCGGGCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
53116035 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
53116066 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
53116083 AACCATTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:53121971 original size:36 final size:37
Alignment explanation
Indices: 53121924--53122001 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
53121914 TTATTACGAA
* * * *
53121924 GTCTTACCCGGAC-TAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
53121960 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
53121997 GTCTT
1 GTCTT
53122002 TAGAGCTCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 13 0.36
37 23 0.64
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:53122279 original size:47 final size:47
Alignment explanation
Indices: 53122119--53122458 Score: 581
Period size: 47 Copynumber: 7.1 Consensus size: 47
53122109 GCCCTTCAGG
*
53122119 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
53122169 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
53122218 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
53122265 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
53122312 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
53122359 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
53122406 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
53122453 ACTTTC
1 ACTTTC
53122459 TTGGCTGAAT
Statistics
Matches: 283, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 196 0.69
49 83 0.29
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:53131142 original size:21 final size:20
Alignment explanation
Indices: 53131116--53131155 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
53131106 GCCGTATTGA
53131116 TTTCGTACTTTGGCCCATTTT
1 TTTCGT-CTTTGGCCCATTTT
* *
53131137 TTTCGTTTTTGGCTCATTT
1 TTTCGTCTTTGGCCCATTT
53131156 CTCGTTCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.07, C:0.20, G:0.15, T:0.57
Consensus pattern (20 bp):
TTTCGTCTTTGGCCCATTTT
Found at i:53133245 original size:50 final size:50
Alignment explanation
Indices: 53133164--53133285 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
53133154 TGATATGTGT
* *
53133164 CAGTGTAAAACCATGTCTGGGACATGGCATCGG-CACGA-AAAGAGGAGAGC
1 CAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCACGATAAA-A-GAGAGC
* * * * *
53133214 CAGTGTAAGACAATGTCTGGGAAATGTCATCGGCCTCGATATAAGAGAGT
1 CAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCACGATAAAAGAGAGC
53133264 CAGTGTAAGACCATGTCTGGGA
1 CAGTGTAAGACCATGTCTGGGA
53133286 CATAGTATCG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 55 0.89
51 5 0.08
52 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCACGATAAAAGAGAGC
Found at i:53133404 original size:43 final size:43
Alignment explanation
Indices: 53133311--53133410 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
53133301 ATAAGTGATT
* * *
53133311 ACATGTAAGACCATGTCTGGGACAGTGGCATTATATTGTGATT
1 ACATGTAAGACCATGTCTGGGACAGTGGCATGATATTGTCATA
* * * *
53133354 TCGTGTAAGACCCTGTGTGGGACAGTGGCATCGATA-TGTCATA
1 ACATGTAAGACCATGTCTGGGACAGTGGCAT-GATATTGTCATA
53133397 ACATGTAAGACCAT
1 ACATGTAAGACCAT
53133411 ATCTAGGATA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
43 43 0.93
44 3 0.07
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTGGGACAGTGGCATGATATTGTCATA
Found at i:53138086 original size:17 final size:17
Alignment explanation
Indices: 53138049--53138081 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
53138039 GAAAAAATCT
53138049 CAAAAGCATAAAGAAAA
1 CAAAAGCATAAAGAAAA
53138066 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
53138081 C
1 C
53138082 CCAAACTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.70, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:53140402 original size:23 final size:22
Alignment explanation
Indices: 53140364--53140439 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
53140354 TATAAAACCT
53140364 AATAAAAATAAGCTT-AAATAAA
1 AATAAAAATAAGCTTAAAAT-AA
53140386 AATAAAAAGT-AGTCTTAAAATAA
1 AATAAAAA-TAAG-CTTAAAATAA
* *
53140409 AATAAAAGTAA-C--AACATAA
1 AATAAAAATAAGCTTAAAATAA
53140428 AATAATAAATAA
1 AATAA-AAATAA
53140440 AAGTTTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 11 0.24
20 5 0.11
21 1 0.02
22 11 0.24
23 14 0.30
24 4 0.09
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (22 bp):
AATAAAAATAAGCTTAAAATAA
Found at i:53146045 original size:17 final size:17
Alignment explanation
Indices: 53146008--53146040 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
53145998 TAAAACATCT
53146008 CAAAAGCATAAAGAAAA
1 CAAAAGCATAAAGAAAA
53146025 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
53146040 C
1 C
53146041 CCAAACTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.70, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:53153528 original size:40 final size:39
Alignment explanation
Indices: 53153465--53153550 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
53153455 TAACGACTTA
**
53153465 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
53153504 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
53153544 TCGGCTA
1 TCGGCTA
53153551 TATATATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 10 0.24
40 31 0.76
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:53161362 original size:24 final size:25
Alignment explanation
Indices: 53161296--53161378 Score: 116
Period size: 26 Copynumber: 3.3 Consensus size: 25
53161286 GGAAGTGCAG
*
53161296 AAAGGGCTTTTGCCCCAGTTTACCGA
1 AAAGGGCTTTTGCCCCAGTTTATC-A
53161322 AAAGGGCTTTTGCCCCAGTTTATCA
1 AAAGGGCTTTTGCCCCAGTTTATCA
*
53161347 AAAGGGC-TTTGCCCCAG-TTATTA
1 AAAGGGCTTTTGCCCCAGTTTATCA
53161370 AAAGAGGCT
1 AAAG-GGCT
53161379 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.25
25 8 0.15
26 23 0.43
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTTTGCCCCAGTTTATCA
Found at i:53161622 original size:31 final size:30
Alignment explanation
Indices: 53161587--53161649 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
53161577 ATTTACAGTG
53161587 AAGGCTTCGGCCCAGTAATATGAAATATTAA
1 AAGGCTTCGGCCCAGTAATATGAAATA-TAA
**
53161618 AAGGCTTCGGCCCAGTGTTATGAAATATAA
1 AAGGCTTCGGCCCAGTAATATGAAATATAA
53161648 AA
1 AA
53161650 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (30 bp):
AAGGCTTCGGCCCAGTAATATGAAATATAA
Found at i:53177994 original size:40 final size:40
Alignment explanation
Indices: 53177939--53178156 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
53177929 TGGATGATAA
* *
53177939 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
53177979 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
53178019 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
53178059 CCGGGCTAAGTCTCGGAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
53178099 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
53178139 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
53178157 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:53183534 original size:47 final size:47
Alignment explanation
Indices: 53183435--53183791 Score: 572
Period size: 47 Copynumber: 7.6 Consensus size: 47
53183425 TATTTGAATA
53183435 AATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53183481 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
53183528 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
53183577 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
53183624 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53183671 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
53183718 AATGTGAAAGTGTTTATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
53183765 GATGTGAAAGTGTGTAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
53183792 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 14, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
46 26 0.09
47 223 0.76
49 45 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:53185484 original size:40 final size:40
Alignment explanation
Indices: 53185203--53185472 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
53185193 GAGAATTGAG
53185203 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
53185243 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
53185283 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
53185323 AGTGATGTATCCGGGCT-AGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
53185362 AGTGATGTATCCGGACTAAGT-TCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
53185401 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
53185441 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
53185473 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 72 0.34
40 142 0.66
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:53189551 original size:47 final size:47
Alignment explanation
Indices: 53189497--53190567 Score: 1746
Period size: 47 Copynumber: 22.6 Consensus size: 47
53189487 TATTTGAATA
53189497 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53189544 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
53189591 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
53189640 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53189687 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53189734 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53189781 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATTTAATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
53189830 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
53189877 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
53189926 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53189973 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53190020 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
53190067 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
53190116 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
53190163 AATGTGAAAGTGTATATATGTGATACGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53190210 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
53190257 AATGTGAAAGGGTATATATATGTGATAAGGCCTAATGGCCGATTTAATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
53190306 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
53190353 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
53190400 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53190447 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
53190494 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53190541 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
53190568 TCCCGAAGGG
Statistics
Matches: 968, Mismatches: 46, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
47 749 0.77
49 219 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:53189656 original size:143 final size:141
Alignment explanation
Indices: 53189497--53190567 Score: 1764
Period size: 143 Copynumber: 7.5 Consensus size: 141
53189487 TATTTGAATA
53189497 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
53189562 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAAT
* *
53189627 GTCCGATGTGATG
129 GGCCAATGTGATG
53189640 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
53189705 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
53189770 CCAATGTGATG
131 CCAATGTGATG
* *
53189781 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATTTAATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
53189846 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
53189911 ATGGCCGATGTGATG
127 ATGGCCAATGTGATG
53189926 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
53189991 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
53190056 CCAATGTGATG
131 CCAATGTGATG
*
53190067 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
53190132 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
53190197 GGCCAATGTGATG
129 GGCCAATGTGATG
* * *
53190210 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATA
* * *
53190275 TATGTGATAAGGCCTAATGGCCGATTTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* *
53190340 AGCCGATGTGATG
129 GGCCAATGTGATG
53190353 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
53190418 TGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
53190483 CCAATGTGATG
131 CCAATGTGATG
* * * * * * *
53190494 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
53190559 TGTGATAAG
66 TGTGATAAG
53190568 TCCCGAAGGG
Statistics
Matches: 873, Mismatches: 47, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
141 275 0.32
143 553 0.63
145 45 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:53189732 original size:22 final size:22
Alignment explanation
Indices: 53189704--53189779 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
53189694 AAGTGTATAT
53189704 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
53189726 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
53189750 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
53189773 ATGTGAT
1 ATGTGAT
53189780 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:53189833 original size:190 final size:188
Alignment explanation
Indices: 53189497--53190567 Score: 1746
Period size: 190 Copynumber: 5.6 Consensus size: 188
53189487 TATTTGAATA
53189497 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
53189562 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
*
53189627 GTCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53189687 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
53189752 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
* * *
53189817 GGCCGATTTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
53189877 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
53189942 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
53190007 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
53190067 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
53190132 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCCGAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
53190197 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
53190257 AATGTGAAAGGGTATATATATGTGATAAGGCCTAATGGCCGATTTAATGAATGTGAAAGTGTATA
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
53190322 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
53190387 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
53190447 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
53190512 TGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
53190568 TCCCGAAGGG
Statistics
Matches: 836, Mismatches: 41, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
188 99 0.12
190 645 0.77
192 92 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:53190018 original size:22 final size:22
Alignment explanation
Indices: 53189990--53190065 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
53189980 AAGTGTATAT
53189990 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
53190012 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
53190036 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
53190059 ATGTGAT
1 ATGTGAT
53190066 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:53201026 original size:16 final size:17
Alignment explanation
Indices: 53200980--53201027 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
53200970 CCTGCCGGAG
53200980 CTCCCTTCTCTCCC-CT
1 CTCCCTTCTCTCCCTCT
* *
53200996 CTCTCTTTTCTTCCCTCT
1 CTCCCTTCTC-TCCCTCT
53201014 C-CCCTTCTCTCCCT
1 CTCCCTTCTCTCCCT
53201028 TTTTTTTCTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 13 0.50
17 10 0.38
18 3 0.12
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (17 bp):
CTCCCTTCTCTCCCTCT
Found at i:53201038 original size:25 final size:23
Alignment explanation
Indices: 53200985--53201042 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
53200975 CGGAGCTCCC
53200985 TTCTCTCCCCTCTCTCTTTTCTT
1 TTCTCTCCCCTCTCTCTTTTCTT
**
53201008 CCCTCTCCCCTTCTCTCCCTTTT-TT
1 TTCTCTCCCC-TCTCT--CTTTTCTT
53201033 TTCTCTCCCC
1 TTCTCTCCCC
53201043 CTGATACAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 8 0.29
24 5 0.18
25 10 0.36
26 5 0.18
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (23 bp):
TTCTCTCCCCTCTCTCTTTTCTT
Found at i:53219128 original size:43 final size:44
Alignment explanation
Indices: 53219081--53219194 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 44
53219071 ACCGATTTGA
*
53219081 GATTTACGTGTAAGACCATGTCTGGGATA-TCAGCATCG-TATTT
1 GATTTACGTGTAAGACCATGTCTGGGACAGTCA-CATCGATATTT
* * * *
53219124 GATTT-CGTATAAGACCCTGTCTGGGACAGTGATATCGATATTT
1 GATTTACGTGTAAGACCATGTCTGGGACAGTCACATCGATATTT
* **
53219167 GA-TTACATGTAAGACCACATCTGGGACA
1 GATTTACGTGTAAGACCATGTCTGGGACA
53219195 TTGGCATTGT
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (44 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGTCACATCGATATTT
Found at i:53219423 original size:20 final size:20
Alignment explanation
Indices: 53219400--53219439 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
53219390 CTATATATAC
53219400 AATGTATTAGGAA-TATGTGT
1 AATGTA-TAGGAACTATGTGT
*
53219420 AATGTATATGAACTATGTGT
1 AATGTATAGGAACTATGTGT
53219440 TTTGTAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.40
Consensus pattern (20 bp):
AATGTATAGGAACTATGTGT
Found at i:53229649 original size:46 final size:46
Alignment explanation
Indices: 53229538--53229798 Score: 143
Period size: 48 Copynumber: 5.4 Consensus size: 46
53229528 TATGTGTGCT
* *
53229538 AGTGTAAGACATGTTTGGGACATGCATCAGCTTGGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTTGGAGAGA--TAAGCC
* * *
53229586 AGTGTAAGACACGTCTGGGACATGCATCAGCATT-GAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-TTGGAGA-GATAAGCC
* * * * * * *
53229632 GGTGTAAGACATGTCTGGGACATGCATCGGCCT-CACAATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTTGGA-GAGAT--AAGCC
* * * *** * *
53229680 AGTGTAAGACCTGTCTGGAACATGGCATCAACACCGATAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCTTGGAGAGAT-A-AGCC
* * *
53229729 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGCTATATGA-AAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAG-CTTG-GAGA-GATAAGCC
*
53229778 AGTGTAAGACCATGTCAGGGA
1 AGTGTAAGA-CATGTCTGGGA
53229799 TATTGCGTCG
Statistics
Matches: 167, Mismatches: 33, Indels: 24
0.75 0.15 0.11
Matches are distributed among these distances:
45 3 0.02
46 32 0.19
48 58 0.35
49 57 0.34
50 12 0.07
51 3 0.02
52 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTTGGAGAGATAAGCC
Found at i:53229703 original size:94 final size:95
Alignment explanation
Indices: 53229535--53229793 Score: 265
Period size: 94 Copynumber: 2.7 Consensus size: 95
53229525 TGTTATGTGT
* * * * *
53229535 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCTTGGA-GATATTTAAGCCAGTGTAAGACAC-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CACAATA-TAAAGCCAGTGTAAGAC-CT
* * **
53229598 GTCTGGGACAT-GCATCAGCATTG-AGACGAGA
63 GTCTGGAACATGGCATCAACACCGAAGACGAGA
* * *
53229629 GCTGGTGTAAGACATGTCTGGGACATGCATCGGCCTCACAATATACAAGCTAGTGTAAGACCTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAATATA-AAGCCAGTGTAAGACCTGT
*
53229694 CTGGAACATGGCATCAACACCGATAGATGAGA
65 CTGGAACATGGCATCAACACCGA-AGACGAGA
* ** *
53229726 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGCTATATGAAAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCACAATAT-AAAGCCAGTGTAAGACC-T
53229791 GTC
63 GTC
53229794 AGGGATATTG
Statistics
Matches: 136, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
93 3 0.02
94 59 0.43
95 9 0.07
97 31 0.23
98 29 0.21
99 5 0.04
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAATATAAAGCCAGTGTAAGACCTGTC
TGGAACATGGCATCAACACCGAAGACGAGA
Found at i:53229782 original size:49 final size:48
Alignment explanation
Indices: 53229535--53229798 Score: 200
Period size: 49 Copynumber: 5.5 Consensus size: 48
53229525 TGTTATGTGT
* * * **
53229535 GCTAGTGTAAGACATGTTTGGGACATGCATCAG-CTTGGAGATATTTAA
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCAGCCTT-GATATATGAAA
* * * * *
53229583 GCCAGTGTAAGACAC-GTCTGGGACATGCATCAGCATTG--AGACGAGA
1 GCTAGTGTAAGAC-CTGTCTGGGACATGCATCAGCCTTGATATATGAAA
* * * * *
53229629 GCTGGTGTAAGACATGTCTGGGACATGCATCGGCC-TCACAATAT-ACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCAGCCTTGA-TATATGA-AA
* * * * *
53229677 GCTAGTGTAAGACCTGTCTGGAACATGGCATCAACAC-CGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACAT-GCATCAGC-CTTGATATATGAAA
*
53229726 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGCTATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACAT-GCATCAGCCTTGATATATGAAA
* *
53229775 GCCAGTGTAAGACCATGTCAGGGA
1 GCTAGTGTAAGACC-TGTCTGGGA
53229799 TATTGCGTCG
Statistics
Matches: 168, Mismatches: 36, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
45 1 0.01
46 32 0.19
47 1 0.01
48 57 0.34
49 66 0.39
50 11 0.07
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGCATCAGCCTTGATATATGAAA
Found at i:53240335 original size:27 final size:27
Alignment explanation
Indices: 53239991--53240411 Score: 427
Period size: 27 Copynumber: 15.6 Consensus size: 27
53239981 TACCCTACAG
* * * *
53239991 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
53240018 GGGTATTTCGGTAATTTTACACTAT-AA
1 GGGTATTTCGGTAATTTTACA-AATCGA
* *
53240045 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
53240072 GGGTGTTTCGGTAATTTTCCAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
53240099 GGGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* **
53240126 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* ***
53240153 GGGTATTTTGGTAATTTTACAAATATC
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
53240180 GGTTATTTCAGTAGTTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
53240206 GGGTATTTTAGTAATTTTACAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
53240232 GGGGTATTTCGGTAATTTTACAAATCGA
1 -GGGTATTTCGGTAATTTTACAAATCGA
* * *
53240260 GGGTATTTTGATAATTTTACAAATAGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
53240287 GGGTGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
53240314 GGGTGTTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** * * * *
53240341 GCATGTTTCGGTAATTTCAAAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
53240368 GGGTATTTCGATAATTTTGCAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
53240395 GGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
53240412 CTCTTTATTA
Statistics
Matches: 329, Mismatches: 59, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
26 22 0.07
27 305 0.93
28 1 0.00
29 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:53240817 original size:28 final size:28
Alignment explanation
Indices: 53240729--53240818 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 28
53240719 GCCCATTTAG
* * *
53240729 GCCCAATCTCGTTCACATGGCCCATCAG
1 GCCCAATCACATTCACATGGCCCATCAA
**
53240757 GCTAAATCACATTCACATGGCCCATC-A
1 GCCCAATCACATTCACATGGCCCATCAA
*
53240784 GACCCAATCGCATTCACATGGCCCATCAA
1 G-CCCAATCACATTCACATGGCCCATCAA
53240813 GCCCAA
1 GCCCAA
53240819 CTACTTCCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
27 1 0.02
28 49 0.94
29 2 0.04
ACGTcount: A:0.29, C:0.38, G:0.14, T:0.19
Consensus pattern (28 bp):
GCCCAATCACATTCACATGGCCCATCAA
Found at i:53246612 original size:48 final size:51
Alignment explanation
Indices: 53246481--53246621 Score: 175
Period size: 50 Copynumber: 2.9 Consensus size: 51
53246471 GAGTTGATAT
*
53246481 GAGATCCTAT-GTAAGACCATGTTTGGGACATGGCATTGGCATCGACATAA
1 GAGATCCCATAGTAAGACCATGTTTGGGACATGGCATTGGCATCGACATAA
* * *
53246531 GAGATCCCATA-TAAGACCATGTTTGGAACATGGCATTGGCATCGA-GT-T
1 GAGATCCCATAGTAAGACCATGTTTGGGACATGGCATTGGCATCGACATAA
* * * *
53246579 GTGATTCCA-AGTAAGACCATATTTGGGATATGGCATTGGCATC
1 GAGATCCCATAGTAAGACCATGTTTGGGACATGGCATTGGCATC
53246622 TTACTATGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
47 1 0.01
48 36 0.45
49 1 0.01
50 42 0.52
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (51 bp):
GAGATCCCATAGTAAGACCATGTTTGGGACATGGCATTGGCATCGACATAA
Found at i:53253981 original size:79 final size:79
Alignment explanation
Indices: 53253850--53254084 Score: 443
Period size: 79 Copynumber: 3.0 Consensus size: 79
53253840 CTGAGAGATA
53253850 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
1 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
53253915 ATTGTATCAAGTTT
66 ATTGTATCAAGTTT
53253929 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
1 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
53253994 ATTGTATCAAGTTT
66 ATTGTATCAAGTTT
* *
53254008 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGACTTTTGGTGCAT
1 AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
*
53254073 ATAGTATCAAGT
66 ATTGTATCAAGT
53254085 GATAGGATCC
Statistics
Matches: 153, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 153 1.00
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.36
Consensus pattern (79 bp):
AGCAGTTGTATGCTAAGTTTAGCAAAAGTGAGTTTTGGCTTAGAGAAGTCAGATTTTTGGGGCAT
ATTGTATCAAGTTT
Found at i:53257519 original size:56 final size:50
Alignment explanation
Indices: 53257452--53257616 Score: 190
Period size: 50 Copynumber: 3.2 Consensus size: 50
53257442 TTGATATGAC
*
53257452 ATCCCATGTAAGACCATGTCCAGGACATGGCATTGGCATTGGCATCGACATAAGAG
1 ATCCCATGTAAGACCATGT-C----CATGACA-TGGCATTGGCATCGACATAAGAG
*
53257508 ATCCCATGTAAGACCATGTCTATGACATGGCATTGGCATCGACATAAGAG
1 ATCCCATGTAAGACCATGTCCATGACATGGCATTGGCATCGACATAAGAG
* * * *
53257558 ATCCCATGTAAGACCATGT--TTGGACCAAGGCATTGGCATCGACATAAAAC
1 ATCCCATGTAAGACCATGTCCAT-GA-CATGGCATTGGCATCGACATAAGAG
53257608 ATCCCATGT
1 ATCCCATGT
53257617 TTGGGACATG
Statistics
Matches: 101, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
48 1 0.01
49 2 0.02
50 73 0.72
51 5 0.05
55 1 0.01
56 19 0.19
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (50 bp):
ATCCCATGTAAGACCATGTCCATGACATGGCATTGGCATCGACATAAGAG
Found at i:53257540 original size:50 final size:50
Alignment explanation
Indices: 53257485--53257616 Score: 205
Period size: 50 Copynumber: 2.6 Consensus size: 50
53257475 GACATGGCAT
53257485 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTCTAT-GA-CA
1 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGT-T-TGGACCA
53257535 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTGGACCA
1 TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTGGACCA
* * *
53257585 AGGCATTGGCATCGACATAAAACATCCCATGT
1 TGGCATTGGCATCGACATAAGAGATCCCATGT
53257617 TTGGGACATG
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
48 1 0.01
49 3 0.04
50 73 0.95
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (50 bp):
TGGCATTGGCATCGACATAAGAGATCCCATGTAAGACCATGTTTGGACCA
Found at i:53265681 original size:39 final size:39
Alignment explanation
Indices: 53265616--53265829 Score: 305
Period size: 39 Copynumber: 5.5 Consensus size: 39
53265606 TGGATGATAA
53265616 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
53265656 CCGGGCTAAGT-CCGAAGGCACTTGTGCGAGTTACTAT-T
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
53265694 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
53265734 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
* *
53265774 CCGGGCTATGT-CCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTA-CTATAT
*
53265813 CC-GGTTAA-TCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
53265830 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 7, Indels: 12
0.90 0.04 0.07
Matches are distributed among these distances:
37 1 0.01
38 25 0.15
39 77 0.48
40 59 0.36
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
Found at i:53272342 original size:5 final size:5
Alignment explanation
Indices: 53272329--53272367 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
53272319 TGATTGATGA
* *
53272329 AAAAA AAAAG AAAAG AGAAAG AAAAG AAAAA AAAAG AAA
1 AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG AAA
53272368 GGCTCTCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:53273676 original size:40 final size:40
Alignment explanation
Indices: 53273621--53273878 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
53273611 TGGATGATAA
* * *
53273621 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
53273661 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
53273701 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
53273741 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
53273781 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
53273821 CCGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
53273861 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
53273879 TACTTGGCTT
Statistics
Matches: 204, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 15 0.07
40 189 0.93
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:53279953 original size:47 final size:47
Alignment explanation
Indices: 53279902--53280390 Score: 728
Period size: 47 Copynumber: 10.3 Consensus size: 47
53279892 TACATGATAG
* *
53279902 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
53279951 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
53279998 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
53280047 TATATGTGATAAGG-CGTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCG-AATGGCCGATGTGATGAATGTGAAAGTGTA
*
53280094 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
53280143 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
53280190 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
53280237 TATATGTGCTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
53280284 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
53280331 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
53280378 TAAATGTGATAAG
1 TATATGTGATAAG
53280391 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 27, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
47 275 0.68
48 4 0.01
49 128 0.31
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:53280013 original size:96 final size:96
Alignment explanation
Indices: 53279902--53280390 Score: 797
Period size: 96 Copynumber: 5.1 Consensus size: 96
53279892 TACATGATAG
*
53279902 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
53279967 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTA
*
53279998 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
53280063 TAATAGCCGATGTGATGAATGTGAAAGTGTA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTA
53280094 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
53280159 TAATAGCCGATGTGATGAATGTGAAAGTGTA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTA
* * *
53280190 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGCTAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
53280253 TAATAGCCGATGTGATGAATGTGAAAGTGTA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTA
* * * *
53280284 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * * *
53280347 GAGTGGCCAACGTGATGGATGTGAAAGTGTA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTA
*
53280378 TAAATGTGATAAG
1 TATATGTGATAAG
53280391 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
94 145 0.39
96 231 0.61
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTA
Found at i:53293869 original size:12 final size:12
Alignment explanation
Indices: 53293852--53293877 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
53293842 TCTCTCAGAA
53293852 TTCCTTCAGGGG
1 TTCCTTCAGGGG
53293864 TTCCTTCAGGGG
1 TTCCTTCAGGGG
53293876 TT
1 TT
53293878 TTAGAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.31, T:0.38
Consensus pattern (12 bp):
TTCCTTCAGGGG
Found at i:53294496 original size:13 final size:13
Alignment explanation
Indices: 53294478--53294506 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
53294468 TTTAGTTTAA
53294478 TTAGTTAATTAGT
1 TTAGTTAATTAGT
53294491 TTAGTTAATTAGT
1 TTAGTTAATTAGT
53294504 TTA
1 TTA
53294507 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:53300830 original size:47 final size:47
Alignment explanation
Indices: 53300626--53301245 Score: 1027
Period size: 47 Copynumber: 13.1 Consensus size: 47
53300616 TATGAAATGA
53300626 TGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
53300672 CGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
53300720 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
53300769 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
53300816 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
53300865 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
53300912 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
53300958 T-AT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
53301003 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
53301050 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
53301096 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
53301143 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
53301192 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
53301239 TGATAAG
1 TGATAAG
53301246 TCCCGAAGGG
Statistics
Matches: 547, Mismatches: 16, Indels: 21
0.94 0.03 0.04
Matches are distributed among these distances:
45 58 0.11
46 112 0.20
47 197 0.36
48 13 0.02
49 167 0.31
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:53301417 original size:36 final size:37
Alignment explanation
Indices: 53301362--53301439 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 37
53301352 CCGAGCTCTA
* * * *
53301362 AAGACCTGATGACTACGTGTGGGGATT-TTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
53301398 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
53301435 AAGAC
1 AAGAC
53301440 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 23 0.64
37 13 0.36
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:53304327 original size:40 final size:40
Alignment explanation
Indices: 53304265--53304522 Score: 328
Period size: 40 Copynumber: 6.5 Consensus size: 40
53304255 AAGCCAAGTA
* * * *
53304265 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* * *
53304304 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
53304344 CCTTCGGGACTTAGCCCGGATATAGTACCTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
53304384 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
53304424 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
* *
53304464 CCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
53304504 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
53304523 TTATCATCCA
Statistics
Matches: 196, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.07
40 183 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:53307681 original size:43 final size:41
Alignment explanation
Indices: 53307618--53307731 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 41
53307608 TATCGTACCA
** * *
53307618 ATGCCATATCCCAGATATGGTCTTACATG-TGATCTCATATCG
1 ATGCCATAAACCAG-TATGGTCTTACACGAAG-TCTCATATCG
*
53307660 ATGCCAATAAACCAGCTATGGTCTTACACGAAGTCTCATCTCG
1 ATGCC-ATAAACCAG-TATGGTCTTACACGAAGTCTCATATCG
**
53307703 ATGCCATATCCCAAGTATGGTCTTACACG
1 ATGCCATAAACC-AGTATGGTCTTACACG
53307732 TAATCTTAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 24 0.39
43 36 0.59
44 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (41 bp):
ATGCCATAAACCAGTATGGTCTTACACGAAGTCTCATATCG
Found at i:53308387 original size:33 final size:33
Alignment explanation
Indices: 53308345--53308408 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
53308335 CACATGTCAA
*
53308345 ACATGGTTCAAACCCTATACCTTAATCATTTTT
1 ACATGGTTCAAACCCTAGACCTTAATCATTTTT
53308378 ACATGGTTCAAACCCTAGACCTTAATCATTT
1 ACATGGTTCAAACCCTAGACCTTAATCATTT
53308409 CTCAAATTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (33 bp):
ACATGGTTCAAACCCTAGACCTTAATCATTTTT
Found at i:53309809 original size:24 final size:24
Alignment explanation
Indices: 53309777--53309823 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
53309767 TAAAGTTCAG
*
53309777 CTTCGTACCCAAAACTTCTTCCAA
1 CTTCATACCCAAAACTTCTTCCAA
*
53309801 CTTCATACCCAAAGCTTCTTCCA
1 CTTCATACCCAAAACTTCTTCCA
53309824 GCTTATTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.38, G:0.04, T:0.30
Consensus pattern (24 bp):
CTTCATACCCAAAACTTCTTCCAA
Found at i:53319150 original size:38 final size:40
Alignment explanation
Indices: 53319050--53319232 Score: 200
Period size: 39 Copynumber: 4.7 Consensus size: 40
53319040 TTGAATGATG
* * *
53319050 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
53319089 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
53319130 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
53319168 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
53319206 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
53319233 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 29 0.24
39 45 0.37
40 38 0.31
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:53319250 original size:79 final size:77
Alignment explanation
Indices: 53319103--53319265 Score: 188
Period size: 78 Copynumber: 2.1 Consensus size: 77
53319093 GGACTAAGAT
* **
53319103 CCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
53319168 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
53319181 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACC-GGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
53319243 TATATCCGGTTAAATT
62 TAAATCCGGTTAAATC
53319259 CCGAAGG
1 CCGAAGG
53319266 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
76 2 0.03
77 15 0.21
78 31 0.42
79 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:53327124 original size:79 final size:81
Alignment explanation
Indices: 53326988--53327172 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
53326978 TTGAATGATG
* *
53326988 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
53327052 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
53327067 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
53327129 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
53327147 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
53327173 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:53327186 original size:40 final size:40
Alignment explanation
Indices: 53326989--53327172 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
53326979 TGAATGATGT
* * * *
53326989 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
53327029 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
53327069 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
53327107 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
53327148 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
53327173 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:53327194 original size:79 final size:79
Alignment explanation
Indices: 53327041--53327205 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
53327031 GGACTAAGAT
* * **
53327041 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
53327106 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
53327120 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
53327183 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
53327199 CCGAAGG
1 CCGAAGG
53327206 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:53394840 original size:27 final size:27
Alignment explanation
Indices: 53394803--53395007 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
53394793 TAAATTGTAC
*
53394803 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
53394830 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
53394857 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
53394883 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
53394911 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
53394938 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
53394966 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
53394993 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
53395008 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:53394864 original size:54 final size:54
Alignment explanation
Indices: 53394804--53395007 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
53394794 AAATTGTACA
* * *
53394804 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
53394858 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
53394912 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
53394967 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
53395008 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:53400524 original size:10 final size:8
Alignment explanation
Indices: 53400501--53400539 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
53400491 AATAAAAAAT
*
53400501 TAAAATCC
1 TAAAATTC
53400509 TAAAATTC
1 TAAAATTC
53400517 AATAAAATTC
1 --TAAAATTC
53400527 TAAAATTC
1 TAAAATTC
53400535 TAAAA
1 TAAAA
53400540 ATATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 20 0.71
10 8 0.29
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (8 bp):
TAAAATTC
Found at i:53400567 original size:21 final size:22
Alignment explanation
Indices: 53400543--53400585 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
53400533 TCTAAAAATA
53400543 TAAAATAAATA-ATTTATTTTT
1 TAAAATAAATATATTTATTTTT
* *
53400564 TAAAATAATTATTTTTATTTTT
1 TAAAATAAATATATTTATTTTT
53400586 GAAATTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TAAAATAAATATATTTATTTTT
Found at i:53401082 original size:19 final size:20
Alignment explanation
Indices: 53401058--53401106 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
53401048 AATTTTTTTG
53401058 AAAAATAAATAATTTATA-A
1 AAAAATAAATAATTTATATA
* *
53401077 AAAAAT-TAT-TTTTATATA
1 AAAAATAAATAATTTATATA
53401095 AAAAATAAATAA
1 AAAAATAAATAA
53401107 ATTTCTCTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATAAATAATTTATATA
Found at i:53401683 original size:111 final size:111
Alignment explanation
Indices: 53401563--53402009 Score: 803
Period size: 111 Copynumber: 4.1 Consensus size: 111
53401553 ACTGTGATTA
**
53401563 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
53401628 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
*
53401674 TTGTTAATATTGTCTTTGAAAAACAATG---TATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
* *
53401736 TTATTTTTATTTTTTTTGAAAGAAAATTACTAGTTGTATATTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
* *
53401782 TTGTGAATATTCTCTTTGAAAAACAATGATATATTGCATTCTCAAGTGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
53401847 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
53401893 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
1 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
53401958 -TATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
53402003 TTGTGAA
1 TTGTGAA
53402010 CACGTTTATA
Statistics
Matches: 321, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
108 102 0.32
110 52 0.16
111 167 0.52
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (111 bp):
TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG
TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTT
Found at i:53401896 original size:219 final size:219
Alignment explanation
Indices: 53401563--53402009 Score: 797
Period size: 219 Copynumber: 2.0 Consensus size: 219
53401553 ACTGTGATTA
*
53401563 TTGTGAATATTGTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
1 TTGTGAATATTCTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
*
53401628 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTTTTGTTAATATTGTCTTTGA
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTTTTGTGAATATTGTCTTTGA
*
53401693 AAAACAATG-TATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTTATTTTTATTTTTTTTGAAA
131 AAAACAATGATATTGCATTCTCAAGCGACCAAAAAGCACTTAAG-TATTTTTATTTTTTGTGAAA
53401757 GAAAATTACTAGTTGTATATTAGTT
195 GAAAATTACTAGTTGTATATTAGTT
* **
53401782 TTGTGAATATTCTCTTTGAAAAACAATGATATATTGCATTCTCAAGTGACCAAAAAGCACTTAAG
1 TTGTGAATATTCTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
53401847 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTTTTGTGAATATTGTCTTTGA
66 TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTTTTGTGAATATTGTCTTTGA
53401912 AAAACAATGATATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTATTTTTATTTTTTGTGAA
131 AAAACAATG--ATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTATTTTTATTTTTTGTGAA
*
53401977 AGAAAATTACTAGTTGTATGTTAGTT
194 AGAAAATTACTAGTTGTATATTAGTT
53402003 TTGTGAA
1 TTGTGAA
53402010 CACGTTTATA
Statistics
Matches: 218, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
219 134 0.61
221 50 0.23
222 34 0.16
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (219 bp):
TTGTGAATATTCTCTTTGAAAAACAATGATATATTGCATTCTCAAGCGAAAAAAAAGCACTTAAG
TTATTTTTATTTTTTGTGAAAGAAAATTACTAGTTGTATGTTAGTTTTGTGAATATTGTCTTTGA
AAAACAATGATATTGCATTCTCAAGCGACCAAAAAGCACTTAAGTATTTTTATTTTTTGTGAAAG
AAAATTACTAGTTGTATATTAGTT
Found at i:53402434 original size:17 final size:18
Alignment explanation
Indices: 53402405--53402438 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
53402395 ATTCAAAATT
53402405 TATAAAAATATAAATTAA
1 TATAAAAATATAAATTAA
53402423 TATAAAAA-ATAAATTA
1 TATAAAAATATAAATTA
53402439 TATTTTAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TATAAAAATATAAATTAA
Found at i:53407955 original size:96 final size:97
Alignment explanation
Indices: 53407791--53408171 Score: 462
Period size: 96 Copynumber: 3.9 Consensus size: 97
53407781 TAGGGTTATA
* * * *** *
53407791 TGAGCAAGTGTAAGACCATTTTTGGAACATGGAATCGACATTTATAT-GAAAGCTAGTGTAAGAC
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATAGAAAGCCAGTGTAAGAC
*
53407855 CATGTCTGGGACATGGTATCGGCCTCGATATG
66 CATGTCTGGGACATGGCATCGGCCTCGATATG
* * ** * *
53407887 TGAGCCAGTGTAAGACCATGTTTGGAGCATGGCATCGACATTGATATA-AAAGCTAGCGTAAGAC
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATAGAAAGCCAGTGTAAGAC
* * *
53407951 CATGTTTGGGACATGGCATCAGCCTCGATATA
66 CATGTCTGGGACATGGCATCGGCCTCGATATG
* * * *
53407983 TGGGCTAGTGTAAGACCATATTTGGAACCTGGCATCGACACCGATATATGAGAGCCAGTGTAAGA
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATA-GAAAGCCAGTGTAAGA
* * *
53408048 CCATTTCTAGGACATGGCATCGACAC-CGATATATG
65 CCATGTCTGGGACATGGCATCGGC-CTCG--ATATG
* *
53408083 AGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGA
1 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATA-GAAAGCCAGTGTAAGA
53408148 CCATGTCTGGGACATGGCATCGGC
65 CCATGTCTGGGACATGGCATCGGC
53408172 ATCTTACCCT
Statistics
Matches: 246, Mismatches: 33, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
96 126 0.51
98 33 0.13
99 1 0.00
100 86 0.35
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (97 bp):
TGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATAGAAAGCCAGTGTAAGAC
CATGTCTGGGACATGGCATCGGCCTCGATATG
Found at i:53408066 original size:50 final size:49
Alignment explanation
Indices: 53407792--53408169 Score: 357
Period size: 48 Copynumber: 7.7 Consensus size: 49
53407782 AGGGTTATAT
* * * **
53407792 GAGCAAGTGTAAGACCATTTTTGGAACATGGAATCGACA--TTTATATGA
1 GAGCCAGTGTAAGACCATATTTGG-ACATGGCATCGACACCGATATATGA
* * * * * * *
53407840 AAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGC-CTCG--ATATGT
1 GAGCCAGTGTAAGACCATAT-TTGGACATGGCATCGACAC-CGATATATGA
* **
53407888 GAGCCAGTGTAAGACCATGTTTGGAGCATGGCATCGACATTGATATA--A
1 GAGCCAGTGTAAGACCATATTTGGA-CATGGCATCGACACCGATATATGA
* * * *
53407936 AAGCTAGCGTAAGACCATGTTTGGGACATGGCATC-AGC-CTCGATATATG-
1 GAGCCAGTGTAAGACCATATTT-GGACATGGCATCGA-CAC-CGATATATGA
* *
53407985 G-GCTAGTGTAAGACCATATTTGGAACCTGGCATCGACACCGATATATGA
1 GAGCCAGTGTAAGACCATATTTGG-ACATGGCATCGACACCGATATATGA
53408034 GAGCCAGTGTAAGACCAT-TTCTAGGACATGGCATCGACACCGATATATGA
1 GAGCCAGTGTAAGACCATATT-T-GGACATGGCATCGACACCGATATATGA
53408084 GAGCCAGTGTAAGACCATATTTGGAACATGGCATCGACACCGATATATGA
1 GAGCCAGTGTAAGACCATATTTGG-ACATGGCATCGACACCGATATATGA
* *
53408134 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATAT-TTGGACATGGCATCG
53408170 GCATCTTACC
Statistics
Matches: 278, Mismatches: 29, Indels: 44
0.79 0.08 0.13
Matches are distributed among these distances:
47 7 0.03
48 134 0.48
49 13 0.05
50 117 0.42
51 7 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATATTTGGACATGGCATCGACACCGATATATGA
Found at i:53412233 original size:40 final size:40
Alignment explanation
Indices: 53412139--53412283 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
53412129 TACTCGAATG
*
53412139 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
53412180 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
53412220 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
53412260 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
53412284 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:53442616 original size:14 final size:14
Alignment explanation
Indices: 53442599--53442629 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
53442589 TAAACACATG
*
53442599 AACAAAAACATACA
1 AACAAAAACACACA
53442613 AACAAAAACACACA
1 AACAAAAACACACA
53442627 AAC
1 AAC
53442630 TAATCCTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.26, G:0.00, T:0.03
Consensus pattern (14 bp):
AACAAAAACACACA
Found at i:53444831 original size:14 final size:14
Alignment explanation
Indices: 53444812--53444840 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
53444802 TCAACCTTAA
53444812 CCCTAGGGGTATAT
1 CCCTAGGGGTATAT
53444826 CCCTAGGGGTATAT
1 CCCTAGGGGTATAT
53444840 C
1 C
53444841 AGTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (14 bp):
CCCTAGGGGTATAT
Found at i:53447896 original size:40 final size:40
Alignment explanation
Indices: 53447844--53448033 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 40
53447834 ATAACCACAA
* * * *
53447844 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
53447884 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
53447924 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
53447964 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
53448004 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
53448034 GTATTCAAAT
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 130 0.97
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:53449788 original size:13 final size:14
Alignment explanation
Indices: 53449765--53449795 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
53449755 TTCATTACTT
53449765 TTTCTTTTTTATTA
1 TTTCTTTTTTATTA
53449779 TTTC-TTTTTATTA
1 TTTCTTTTTTATTA
53449792 TTTC
1 TTTC
53449796 CTTTCTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCTTTTTTATTA
Found at i:53449799 original size:14 final size:14
Alignment explanation
Indices: 53449765--53449799 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
53449755 TTCATTACTT
*
53449765 TTTCTTTTTTATTA
1 TTTCCTTTTTATTA
53449779 TTT-CTTTTTATTA
1 TTTCCTTTTTATTA
53449792 TTTCCTTT
1 TTTCCTTT
53449800 CTTTTGCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCCTTTTTATTA
Found at i:53454695 original size:40 final size:40
Alignment explanation
Indices: 53454487--53454697 Score: 250
Period size: 40 Copynumber: 5.3 Consensus size: 40
53454477 TCTTCGGAAT
* * * * *
53454487 TTAG-CCGGATATAACCACAAGCACAATTTCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * *
53454526 TTAACCCAGG-T-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCC-GGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
53454566 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
53454606 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
53454646 TTAACCCGGATAAAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
53454686 TTAGCCCGGATA
1 TTAGCCCGGATA
53454698 TCATTCAAAT
Statistics
Matches: 152, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 7 0.05
40 139 0.91
41 6 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:53454965 original size:25 final size:25
Alignment explanation
Indices: 53454936--53454988 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
53454926 ACTCGAAGAC
53454936 TTACCTCGGATGTTGTCGAACAACT
1 TTACCTCGGATGTTGTCGAACAACT
53454961 TTACCTCGGATGTTGTCGAACAACT
1 TTACCTCGGATGTTGTCGAACAACT
53454986 TTA
1 TTA
53454989 ATGGCTATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
TTACCTCGGATGTTGTCGAACAACT
Found at i:53462648 original size:40 final size:39
Alignment explanation
Indices: 53462584--53462795 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 39
53462574 TTCTTCGAAT
* *
53462584 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATA-AAACACTAGCACAAATGCCTTCGGGTC
* * *
53462623 TTAAGCCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TT-AGCCCGGATAAAAC-ACTAGCACAAATGCCTTCGGGTC
* * * *
53462663 TTAGCCCGGATATATCAACTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATAAAAC-ACTAGCACAAATGCCTTCGGGTC
53462703 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAA-CACTAGCACAAATGCCTTCGGGTC
* *
53462743 TTAACCCGGATAAAATCACTAGCACAAATTGCCTTCGGGAC
1 TTAGCCCGGATAAAA-CACTAGCACAAA-TGCCTTCGGGTC
53462784 TTAGCCCGGATA
1 TTAGCCCGGATA
53462796 TCATTCAAAT
Statistics
Matches: 154, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
39 11 0.07
40 116 0.75
41 27 0.18
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATAAAACACTAGCACAAATGCCTTCGGGTC
Found at i:53471466 original size:13 final size:13
Alignment explanation
Indices: 53471450--53471474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53471440 AATCTGCTAA
53471450 AAAAATAAAAAAT
1 AAAAATAAAAAAT
53471463 AAAAATAAAAAA
1 AAAAATAAAAAA
53471475 GCAGTTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:53473931 original size:15 final size:15
Alignment explanation
Indices: 53473911--53473940 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
53473901 TGACTTACCT
53473911 CACTTTCACCTTTGC
1 CACTTTCACCTTTGC
*
53473926 CACTTTCACTTTTGC
1 CACTTTCACCTTTGC
53473941 TCACCACAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.37, G:0.07, T:0.43
Consensus pattern (15 bp):
CACTTTCACCTTTGC
Found at i:53478879 original size:50 final size:50
Alignment explanation
Indices: 53478756--53479048 Score: 232
Period size: 50 Copynumber: 5.8 Consensus size: 50
53478746 AACCGAAGCT
* * * * *
53478756 ATCTGGTACGCATAGTAGCCTCCACTTAGTACTACACATG-CAGCC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACC
* * * *
53478805 ATC-CAGTACACGTAGTAACTTGCACTTAGTACTACACATGTGACCTAACC
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * * * * **
53478855 ATCTGATACACGTAGTAGCTTGCACTTAGTACTATAGACGTGATCGAAGTT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CC
* * * * * *
53478906 GTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * *
53478956 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAAAAC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACC
* * * * *
53479007 ATCTTAAACACATAGTAGCCTACACATAGTACAACACATGTG
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTG
53479049 TTCTCACAAT
Statistics
Matches: 193, Mismatches: 45, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
49 34 0.18
50 84 0.44
51 75 0.39
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:53479021 original size:101 final size:98
Alignment explanation
Indices: 53478754--53479046 Score: 257
Period size: 101 Copynumber: 2.9 Consensus size: 98
53478744 GCAACCGAAG
* * * *
53478754 CTATCTGGTACGCATAGTAGCCTCCACTTAGTACTACACA--TGCAGCCAACAATCCAGTACACG
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTG-A-CCAAAAATCCA-TACACA
* * *
53478817 TAGTAACTTGCACTTAGTACTACACATGTGACCTAA
63 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
* * * * * * * * *** ** *
53478853 CCATCTGATACACGTAGTAGCTTGCACTTAGTACTATAGACGTGATCGAAGTTGTCGGGTACGCA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-AAATC-CATACACA
53478918 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
63 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
* *
53478954 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACATCTTAAACACA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACC-AAAA-ATC-CATACACA
* * *
53479019 TAGTAGCCTACACATAGTACAACACATG
63 TAGTAGCCTGCACTTAGTACTACACATG
53479047 TGTTCTCACA
Statistics
Matches: 149, Mismatches: 39, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
99 32 0.21
100 5 0.03
101 112 0.75
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (98 bp):
CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCAAAAATCCATACACATAG
TAGCCTGCACTTAGTACTACACATGCGACCTAA
Found at i:53479042 original size:26 final size:26
Alignment explanation
Indices: 53478963--53479045 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
53478953 ACTATCTGGT
* *
53478963 ACACATAGTAGCCTACACTTAGTACT
1 ACACATAGTAGCCTACACATAGTACA
* * **
53478989 ACACA-CGT-GACCTAAAACATCTTA-A
1 ACACATAGTAG-CCT-ACACATAGTACA
53479014 ACACATAGTAGCCTACACATAGTACA
1 ACACATAGTAGCCTACACATAGTACA
53479040 ACACAT
1 ACACAT
53479046 GTGTTCTCAC
Statistics
Matches: 42, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
24 1 0.02
25 17 0.40
26 23 0.55
27 1 0.02
ACGTcount: A:0.41, C:0.28, G:0.10, T:0.22
Consensus pattern (26 bp):
ACACATAGTAGCCTACACATAGTACA
Found at i:53482588 original size:26 final size:27
Alignment explanation
Indices: 53482548--53482645 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
53482538 CCCTAATTGA
* *
53482548 TAAAATGAATATTTTTCCGTTATAT-G
1 TAAAATGACTATTTTTCCCTTATATGG
*
53482574 TAAAATGACT-TTTTTCCCTTATGTGG
1 TAAAATGACTATTTTTCCCTTATATGG
* *
53482600 TAAAATGACAATTTTGCCCTTATATGG
1 TAAAATGACTATTTTTCCCTTATATGG
* * *
53482627 TAAATTGATTGTTTTTCCC
1 TAAAATGACTATTTTTCCC
53482646 CTCTGTGATA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
25 12 0.20
26 19 0.32
27 28 0.47
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (27 bp):
TAAAATGACTATTTTTCCCTTATATGG
Found at i:53482622 original size:27 final size:27
Alignment explanation
Indices: 53482548--53482630 Score: 100
Period size: 26 Copynumber: 3.1 Consensus size: 27
53482538 CCCTAATTGA
*
53482548 TAAAATGA-ATATTTTTCCGTTATAT-G
1 TAAAATGACA-ATTTTTCCCTTATATGG
* *
53482574 TAAAATGAC-TTTTTTCCCTTATGTGG
1 TAAAATGACAATTTTTCCCTTATATGG
*
53482600 TAAAATGACAATTTTGCCCTTATATGG
1 TAAAATGACAATTTTTCCCTTATATGG
53482627 TAAA
1 TAAA
53482631 TTGATTGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
25 12 0.25
26 18 0.38
27 18 0.38
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (27 bp):
TAAAATGACAATTTTTCCCTTATATGG
Found at i:53483001 original size:18 final size:18
Alignment explanation
Indices: 53482975--53483009 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
53482965 ACTTACATAC
* *
53482975 TGTTTACTGTTGCTGCAT
1 TGTTAACTGTTACTGCAT
53482993 TGTTAACTGTTACTGCA
1 TGTTAACTGTTACTGCA
53483010 ATGGGACAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (18 bp):
TGTTAACTGTTACTGCAT
Found at i:53487971 original size:17 final size:17
Alignment explanation
Indices: 53487930--53487971 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
53487920 ATATTATGAT
*
53487930 AAAAAAATAATGAAAAG
1 AAAAAAATAAAGAAAAG
*
53487947 AAATAAATAAAGAAAA-
1 AAAAAAATAAAGAAAAG
53487963 ATAAAAAAT
1 A-AAAAAAT
53487972 GAAATAGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (17 bp):
AAAAAAATAAAGAAAAG
Found at i:53488273 original size:17 final size:18
Alignment explanation
Indices: 53488233--53488273 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
53488223 AAATAATTAT
*
53488233 CTAAATGCAAAATGATCC
1 CTAAATGCAAAATGAACC
*
53488251 CT-AATGC-AAATTAACC
1 CTAAATGCAAAATGAACC
53488267 CTAAATG
1 CTAAATG
53488274 TAATGTATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 9 0.45
17 9 0.45
18 2 0.10
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (18 bp):
CTAAATGCAAAATGAACC
Found at i:53490174 original size:48 final size:47
Alignment explanation
Indices: 53490121--53490450 Score: 277
Period size: 48 Copynumber: 6.9 Consensus size: 47
53490111 TGAATTACCA
* * * *
53490121 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATGTCGAGGCCC
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATC-AGGCCG
* * * * * *
53490169 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCATTGCCA
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATCA-GGCCG
* * * ** *
53490217 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATGATGTGGTCG
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCAT-ATCAGGCCG
* ** * *
53490265 ATGCCATGTTCCATACATGGTCTTACACT-ATTACACATATCAGTGTCG
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCT-CTCATATCAG-GCCG
* * * *
53490313 ATGCCATG-TCCTAGACATGGTCTTACACTGGATCTCACAACATCGCCG
1 ATGCCATGTTCC-AGACATGGTCTTACACTGGCTCTCATATCA-GGCCG
* * * *
53490361 ATGCCATGTTCCAAACATGGTCTTACACTGTCTCTCATATCGTGGCCT
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATC-AGGCCG
* * * *
53490409 ATGCCATGTCCCAGACAAGGTCTTACACTGGCACACATATCA
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATCA
53490451 CTCAGATGTC
Statistics
Matches: 226, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
47 8 0.04
48 213 0.94
49 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATCAGGCCG
Found at i:53490283 original size:96 final size:96
Alignment explanation
Indices: 53490118--53490440 Score: 337
Period size: 96 Copynumber: 3.4 Consensus size: 96
53490108 GTGTGAATTA
* * * * * *
53490118 CCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATG-TCGAGGCCCATGCCATGTCCCA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTTCCA
* * *
53490182 GACATGGTCTTACACTAGCTCTCGTCTCATTG
65 AACATGGTCTTACACTAGCTCTCATATCATTG
* * * *
53490214 CCAATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATGATGTGGTCGATGCCATGTTCCAT
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTTCCAA
* * *
53490279 ACATGGTCTTACACTA-TTACACATATCAGTG
66 ACATGGTCTTACACTAGCT-CTCATATCATTG
* * * * ** ** *
53490310 TCGATGCCATGTCCTAGACATGGTCTTACACTGGATCTCACAACATCGCCGATGCCATGTTCCAA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTTCCAA
* *
53490375 ACATGGTCTTACACT-GTCTCTCATATCGTGG
66 ACATGGTCTTACACTAG-CTCTCATATCATTG
* *
53490406 CCTATGCCATGTCCCAGACAAGGTCTTACACTGGC
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGC
53490441 ACACATATCA
Statistics
Matches: 185, Mismatches: 38, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
95 1 0.01
96 182 0.98
97 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (96 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTTCCAA
ACATGGTCTTACACTAGCTCTCATATCATTG
Found at i:53490450 original size:144 final size:143
Alignment explanation
Indices: 53490121--53490450 Score: 378
Period size: 144 Copynumber: 2.3 Consensus size: 143
53490111 TGAATTACCA
* * *
53490121 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATGTCGAGGCCCATGCCATGTCCCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATC-AGGCCCATGCCATGTCCCAGACA
* * * * * *
53490186 TGGTCTTACACTAGCTCTCGTCTCATTGCCAATGCCATGTCCCAGACATGGTTTTACACTAGCTC
65 TGGTCTTACACTAGATCTCGACACATCGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTC
*
53490251 TCATGATGTGGTCG
130 TCATGATGTGGCCG
* *** * * *
53490265 ATGCCATGTTCCATACATGGTCTTACACTATTACACATATCAGTGTCGATGCCATGTCCTAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATCAG-GCCCATGCCATGTCCCAGACA
* * *
53490330 TGGTCTTACACTGGATCTC-ACAACATCGCCGATGCCATGTTCCAAACATGGTCTTACACT-GTC
65 TGGTCTTACACTAGATCTCGAC-ACATCGCCAATGCCATGTCCCAAACATGGTCTTACACTAG-C
*
53490393 TCTCAT-ATCGTGGCCT
128 TCTCATGAT-GTGGCCG
* * *
53490409 ATGCCATGTCCCAGACAAGGTCTTACACTGGCACACATATCA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATCA
53490451 CTCAGATGTC
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
143 6 0.04
144 149 0.96
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (143 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATCAGGCCCATGCCATGTCCCAGACAT
GGTCTTACACTAGATCTCGACACATCGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
CATGATGTGGCCG
Found at i:53500023 original size:40 final size:40
Alignment explanation
Indices: 53499941--53500160 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
53499931 TATTCGAATG
* * *
53499941 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
** * * *
53499981 ATATATGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
53500021 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
53500061 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * **
53500101 ATATTCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
53500140 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
53500161 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 16 0.11
40 120 0.79
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:53502110 original size:40 final size:40
Alignment explanation
Indices: 53502030--53502192 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
53502020 CGGGATTTAA
* * * *
53502030 CCGGATATAGCT-ACTCGCTCGAAT-ACTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
53502069 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
53502109 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
53502149 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
53502189 CCGG
1 CCGG
53502193 TTATCATCCA
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 21 0.19
40 90 0.80
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:53503507 original size:51 final size:51
Alignment explanation
Indices: 53503429--53503604 Score: 309
Period size: 51 Copynumber: 3.5 Consensus size: 51
53503419 ATTTCCTCAA
* * *
53503429 AGCTCTTTTTCCTTCCTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
53503480 AGCTTTTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
53503531 AGCTTTTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
*
53503582 AGCTTTTTTTTCTT-TCTTTCTTT
1 AGCTTTTTTTTCTTCTTTTTCTTT
53503605 TCCTTTTTTC
Statistics
Matches: 121, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
50 8 0.07
51 113 0.93
ACGTcount: A:0.18, C:0.23, G:0.11, T:0.49
Consensus pattern (51 bp):
AGCTTTTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
Found at i:53511335 original size:40 final size:40
Alignment explanation
Indices: 53511275--53511458 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
53511265 TATTCGAATG
*
53511275 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
53511315 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
53511355 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
53511395 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
53511435 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
53511459 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:53511408 original size:80 final size:80
Alignment explanation
Indices: 53511275--53511458 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
53511265 TATTCGAATG
* * *
53511275 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
53511339 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
53511355 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
53511420 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
53511435 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
53511459 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:53519614 original size:96 final size:96
Alignment explanation
Indices: 53519466--53519720 Score: 329
Period size: 96 Copynumber: 2.7 Consensus size: 96
53519456 CACGTTCCAA
* * * *
53519466 ACATGGTCTTACACTAGCTCGT-ATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTACACTA
1 ACATGGTCTTACACTGGCTC-TCATATCGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
* * * *
53519530 GC-TCTCGTCTCATTGTCGATGCCATGT-CTCAG
65 GCGT-ACATATCAATGTCGATGCCATGTCCT-AG
* *
53519562 ACATGGTCTTGCACTGGCTCTCATGAT-GTGGTCGATGCCATGTCCCAGACATGGTCTTACACTA
1 ACATGGTCTTACACTGGCTCTCAT-ATCGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
53519626 GCGTACATATCAATGTCGATGCCATGTCCTAG
65 GCGTACATATCAATGTCGATGCCATGTCCTAG
* * *
53519658 ACATGGTCTTACATTGGCTCTCATATCGTGGCCGATGTCATGTCGCAGACATGGTCTTACACT
1 ACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGACATGGTCTTACACT
53519721 GGCACACATA
Statistics
Matches: 139, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
95 3 0.02
96 132 0.95
97 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (96 bp):
ACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
CGTACATATCAATGTCGATGCCATGTCCTAG
Found at i:53519710 original size:144 final size:143
Alignment explanation
Indices: 53519450--53519723 Score: 361
Period size: 144 Copynumber: 1.9 Consensus size: 143
53519440 GGTGAATTGC
* * *
53519450 CGATGCCACGTTCCAAACATGGTCTTACACTAGCTCGTATGTCGAGGCCGATGCCATGTCCTAGA
1 CGATGCCACGTCCCAAACATGGTCTTACACTAGCTCG-ATATCAAGGCCGATGCCATGTCCTAGA
* * * * * *
53519515 CATGGTCTTACACTAGCTCTCGTCTCATTGTCGATGCCATGTCTCAGACATGGTCTTGCACTGGC
65 CATGGTCTTACACTAGCTCTCATATCATGGCCGATGCCATGTCGCAGACATGGTCTTACACTGGC
53519580 TCTCATGATGTGGT
130 TCTCATGATGTGGT
* * * *
53519594 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGTAC-ATATCAATGTCGATGCCATGTCCTAG
1 CGATGCCACGTCCCAAACATGGTCTTACACTAGC-T-CGATATCAAGGCCGATGCCATGTCCTAG
* * * *
53519658 ACATGGTCTTACATTGGCTCTCATATCGTGGCCGATGTCATGTCGCAGACATGGTCTTACACTGG
64 ACATGGTCTTACACTAGCTCTCATATCATGGCCGATGCCATGTCGCAGACATGGTCTTACACTGG
53519723 C
129 C
53519724 ACACATATCA
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
144 109 0.98
145 1 0.01
146 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (143 bp):
CGATGCCACGTCCCAAACATGGTCTTACACTAGCTCGATATCAAGGCCGATGCCATGTCCTAGAC
ATGGTCTTACACTAGCTCTCATATCATGGCCGATGCCATGTCGCAGACATGGTCTTACACTGGCT
CTCATGATGTGGT
Found at i:53519732 original size:48 final size:47
Alignment explanation
Indices: 53519450--53519720 Score: 271
Period size: 48 Copynumber: 5.6 Consensus size: 47
53519440 GGTGAATTGC
* * * * *
53519450 CGATGCCACGTTCCAAACATGGTCTTACACTAGCTCGT-ATGTCGAGGC
1 CGATGCCATG-TCCAGACATGGTCTTACACTAGCTC-TCATATCGTGGT
* * * *
53519498 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCATTGT
1 CGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATATCGTGGT
* *
53519546 CGATGCCATGTCTCAGACATGGTCTTGCACTGGCTCTCATGAT-GTGGT
1 CGATGCCATGTC-CAGACATGGTCTTACACTAGCTCTCAT-ATCGTGGT
* *
53519594 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGT-ACATATCAAT-GT
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGC-TCTCATATC-GTGGT
* * *
53519642 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATATCGTGGC
1 CGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATATCGTGGT
*
53519690 CGATGTCATGTCGCAGACATGGTCTTACACT
1 CGATGCCATGTC-CAGACATGGTCTTACACT
53519721 GGCACACATA
Statistics
Matches: 186, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
47 10 0.05
48 170 0.91
49 6 0.03
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (47 bp):
CGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATATCGTGGT
Found at i:53524775 original size:46 final size:48
Alignment explanation
Indices: 53524642--53524863 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 48
53524632 GTATAATGTC
* *
53524642 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGTAGCT
* * *
53524692 GATGCCATCTCCCAGACATGGTCTTACATTGAC--ACATCTCGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCT
* *
53524738 GATG-CATGTCCCAGACAT-GTCTTACACCGGCTTACATCTTG-AGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCT
* * ** * *
53524784 GATG-CATGTCCCAGACAT-GTCTTAGACTAGCTCT-TGTCTC-AATGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGTA-GCT
* *
53524830 GATGCCATGTTCCAGACATGGTCTTACAGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
53524864 CTCATAATGT
Statistics
Matches: 142, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 61 0.43
47 14 0.10
48 11 0.08
50 29 0.20
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCT
Found at i:53524854 original size:94 final size:92
Alignment explanation
Indices: 53524737--53524908 Score: 220
Period size: 94 Copynumber: 1.8 Consensus size: 92
53524727 ATCTCGTAGC
** ** *
53524737 TGATGCATGTCCCAGACATGTCTTACACCGGCT-TACATCTTGAGGCTGATGCATGTCCCAGACA
1 TGATGCATGTCCCAGACATGTCTTACACCGGCTCT-CATAATGAGGCCAATGCATGTCACAGACA
*
53524801 TGTCTTAGACTAGCTCTTGTCTCAATGT
65 TGTCTTACACTAGCTCTTGTCTCAATGT
* ** *
53524829 TGATGCCATGTTCCAGACATGGTCTTACAGTGGCTCTCATAATGTGGCCAATGCATGTCACAGAC
1 TGATG-CATGTCCCAGACAT-GTCTTACACCGGCTCTCATAATGAGGCCAATGCATGTCACAGAC
53524894 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
53524909 ACACAAATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 48 0.72
95 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (92 bp):
TGATGCATGTCCCAGACATGTCTTACACCGGCTCTCATAATGAGGCCAATGCATGTCACAGACAT
GTCTTACACTAGCTCTTGTCTCAATGT
Found at i:53528657 original size:35 final size:35
Alignment explanation
Indices: 53528618--53528684 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
53528608 TAAAACTTAA
53528618 AAAGATGGTAATATAGATTATGATGTAGGTGATAG
1 AAAGATGGTAATATAGATTATGATGTAGGTGATAG
*
53528653 AAAGATGGTAATATGGATTATGATGTAGGTGA
1 AAAGATGGTAATATAGATTATGATGTAGGTGA
53528685 ATAACAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.31
Consensus pattern (35 bp):
AAAGATGGTAATATAGATTATGATGTAGGTGATAG
Found at i:53543582 original size:16 final size:18
Alignment explanation
Indices: 53543551--53543583 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
53543541 GGTTCCTATT
53543551 TTTTAGCCGATTTGATGC
1 TTTTAGCCGATTTGATGC
53543569 TTTTA-CCG-TTTGATG
1 TTTTAGCCGATTTGATG
53543584 AATTTGATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (18 bp):
TTTTAGCCGATTTGATGC
Found at i:53548132 original size:34 final size:34
Alignment explanation
Indices: 53548088--53548156 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
53548078 AATGCATCGC
* *
53548088 ATGAACTTTTAGTAAAAGAAATATATGTGTTGAG
1 ATGAACTTTTAGTAAAAGAAAAATATGTGCTGAG
*
53548122 ATGAAGTTTTAGTAAAAGAAAAATATGTGCTGAG
1 ATGAACTTTTAGTAAAAGAAAAATATGTGCTGAG
53548156 A
1 A
53548157 ATCTATGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (34 bp):
ATGAACTTTTAGTAAAAGAAAAATATGTGCTGAG
Found at i:53550574 original size:56 final size:56
Alignment explanation
Indices: 53550300--53550568 Score: 387
Period size: 56 Copynumber: 4.8 Consensus size: 56
53550290 GAAGCATATG
*
53550300 TGGCATCGATATGTGACT-TCGATATATATGTGCGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCT-GATATATATGTGCGAGTAAGACCACGTTTAATACGT
*
53550356 TGGCATCGATATGTGACTCTGATATATATATGTGCGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTG--ATATATATGTGCGAGTAAGACCACGTTTAATACGT
* * *
53550414 TGGCATCGATATATGACTCCGATATATATGTGCAAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
* * * *
53550470 TGGCATCGATATGTGACTCCGATATATGTGTTCGAGTAAGACCATGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
* * * *
53550526 TGGCATCGATATATGGCTCTGATATATGTGTACGAGTAAGACC
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACC
53550569 CTGTTTGGGG
Statistics
Matches: 197, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
56 142 0.72
57 1 0.01
58 54 0.27
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
Found at i:53550597 original size:112 final size:113
Alignment explanation
Indices: 53550300--53550568 Score: 387
Period size: 114 Copynumber: 2.4 Consensus size: 113
53550290 GAAGCATATG
* * * * *
53550300 TGGCATCGATATGTGACTTCGATATATATGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCGA
1 TGGCATCGATATATGACTCCGATATATATGTACAAGTAAGACCACGTTTAATACGTTGGCATCGA
* *
53550365 TATGTGACTCTGATATATATATGTGCGAGTAAGTCCACGTTTAATACGT
66 TATGTGACTCCGA-ATATATATGTGCGAGTAAGACCACGTTTAATACGT
*
53550414 TGGCATCGATATATGACTCCGATATATATGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGA
1 TGGCATCGATATATGACTCCGATATATATGTACAAGTAAGACCACGTTTAATACGTTGGCATCGA
* * *
53550479 TATGTGACTCCG-ATATATGTGTTCGAGTAAGACCATGTTTAATACGT
66 TATGTGACTCCGAATATATATGTGCGAGTAAGACCACGTTTAATACGT
* * * *
53550526 TGGCATCGATATATGGCTCTGATATATGTGTACGAGTAAGACC
1 TGGCATCGATATATGACTCCGATATATATGTACAAGTAAGACC
53550569 CTGTTTGGGG
Statistics
Matches: 141, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
112 69 0.49
114 72 0.51
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (113 bp):
TGGCATCGATATATGACTCCGATATATATGTACAAGTAAGACCACGTTTAATACGTTGGCATCGA
TATGTGACTCCGAATATATATGTGCGAGTAAGACCACGTTTAATACGT
Found at i:53557535 original size:15 final size:15
Alignment explanation
Indices: 53557498--53557526 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
53557488 TATTCCTATC
53557498 TAATAATAATAATTA
1 TAATAATAATAATTA
53557513 TAATAATAATAATT
1 TAATAATAATAATT
53557527 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Done.