Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 17 of 332
Found at i:4839228 original size:22 final size:21
Alignment explanation
Indices: 4839185--4839229 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
4839175 AATTTAATCT
*
4839185 AATTATTTTAAATATTACTTA
1 AATTATTTTAAAAATTACTTA
* *
4839206 AATTTTTTTAAAAAATTATTTA
1 AATTATTTT-AAAAATTACTTA
4839228 AA
1 AA
4839230 ATTAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATTTTAAAAATTACTTA
Found at i:4839241 original size:22 final size:23
Alignment explanation
Indices: 4839216--4839279 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
4839206 AATTTTTTTA
*
4839216 AAAAATTATTTAAAATT-AATAT
1 AAAAATTATTAAAAATTCAATAT
4839238 AAAAGA-TA-TAAAAATTCAATAT
1 AAAA-ATTATTAAAAATTCAATAT
* *
4839260 AAAAATTATAAAAAAGTCAA
1 AAAAATTATTAAAAATTCAA
4839280 ACATTAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 8 0.23
22 17 0.49
23 10 0.29
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (23 bp):
AAAAATTATTAAAAATTCAATAT
Found at i:4839315 original size:40 final size:40
Alignment explanation
Indices: 4839271--4839393 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
4839261 AAAATTATAA
* *
4839271 AAAAGTCAAACATTAGCGGCGTTTATGATAAAAACGCCGC
1 AAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
* * **
4839311 AAAAGACAAGCAATACCGGCGTTTAT-ATAAAAACGCTAC
1 AAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
* * * *
4839350 AAAAGGCAATCAATAGCAGTGTTTATGATAAAAACGCCGC
1 AAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
4839390 AAAA
1 AAAA
4839394 AGTAATTTAT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 32 0.46
40 37 0.54
ACGTcount: A:0.45, C:0.19, G:0.18, T:0.19
Consensus pattern (40 bp):
AAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
Found at i:4839353 original size:39 final size:40
Alignment explanation
Indices: 4839287--4839393 Score: 135
Period size: 39 Copynumber: 2.7 Consensus size: 40
4839277 CAAACATTAG
*
4839287 CGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAATAC
1 CGGCGTTTATGATAAAAACGCCACAAAAGACAAGCAATAC
* * * *
4839327 CGGCGTTTAT-ATAAAAACGCTACAAAAGGCAATCAATAG
1 CGGCGTTTATGATAAAAACGCCACAAAAGACAAGCAATAC
* * *
4839366 CAGTGTTTATGATAAAAACGCCGCAAAA
1 CGGCGTTTATGATAAAAACGCCACAAAA
4839394 AGTAATTTAT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 32 0.56
40 25 0.44
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (40 bp):
CGGCGTTTATGATAAAAACGCCACAAAAGACAAGCAATAC
Found at i:4839583 original size:18 final size:18
Alignment explanation
Indices: 4839560--4839596 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
4839550 ATTTCTCTCC
4839560 CCCAATTCCCTTTTCTTT
1 CCCAATTCCCTTTTCTTT
4839578 CCCAATTCCCTTTTCTTT
1 CCCAATTCCCTTTTCTTT
4839596 C
1 C
4839597 TCAGCCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.41, G:0.00, T:0.49
Consensus pattern (18 bp):
CCCAATTCCCTTTTCTTT
Found at i:4843000 original size:241 final size:241
Alignment explanation
Indices: 4842577--4843011 Score: 852
Period size: 241 Copynumber: 1.8 Consensus size: 241
4842567 ATGAATTAAT
*
4842577 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
*
4842642 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTGACGGGTTGCCTTATATCGAG
4842707 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
4842772 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
4842818 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
4842883 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTGACGGGTTGCCTTATATCGAG
4842948 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
4843012 ACTATATTCA
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
241 192 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:4843154 original size:9 final size:9
Alignment explanation
Indices: 4843131--4843251 Score: 89
Period size: 9 Copynumber: 12.6 Consensus size: 9
4843121 ATTGATCATT
*
4843131 ACTTAAATA
1 ACTTACATA
*
4843140 AATTACATA
1 ACTTACATA
4843149 ACTTACATA
1 ACTTACATA
*
4843158 TCTCATACATA
1 ACT--TACATA
*
4843169 ATTTACATAACA
1 ACTTACAT---A
4843181 ACTTACATA
1 ACTTACATA
**
4843190 ACTCGCATA
1 ACTTACATA
4843199 ACTTACATA
1 ACTTACATA
*
4843208 ATTTACATA
1 ACTTACATA
*
4843217 ACTCACATA
1 ACTTACATA
*
4843226 ACGTACATAACA
1 ACTTACAT---A
4843238 ACTTACATA
1 ACTTACATA
4843247 ACTTA
1 ACTTA
4843252 ACTAATACAT
Statistics
Matches: 87, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
9 64 0.74
11 7 0.08
12 16 0.18
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:4843225 original size:27 final size:27
Alignment explanation
Indices: 4843137--4843236 Score: 101
Period size: 27 Copynumber: 3.5 Consensus size: 27
4843127 CATTACTTAA
* *
4843137 ATAAATTACATAACTTACATATCTCATAC
1 ATAACTTACATAACTTACATAACTC--AC
* *
4843166 ATAATTTACATAACAACTTACATAACTCGC
1 ATAACTTACAT---AACTTACATAACTCAC
*
4843196 ATAACTTACATAATTTACATAACTCAC
1 ATAACTTACATAACTTACATAACTCAC
*
4843223 ATAACGTACATAAC
1 ATAACTTACATAAC
4843237 AACTTACATA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
27 26 0.43
29 10 0.17
30 11 0.18
32 13 0.22
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (27 bp):
ATAACTTACATAACTTACATAACTCAC
Found at i:4843237 original size:57 final size:58
Alignment explanation
Indices: 4843137--4843249 Score: 165
Period size: 57 Copynumber: 1.9 Consensus size: 58
4843127 CATTACTTAA
* **
4843137 ATAAATTACATAACTTACATATCTCATACATAATTTACATAACAACTTACATAACTCGC
1 ATAAATTACATAACTTACATAACTCA-ACATAACGTACATAACAACTTACATAACTCGC
* *
4843196 ATAACTTACATAATTTACATAACTC-ACATAACGTACATAACAACTTACATAACT
1 ATAAATTACATAACTTACATAACTCAACATAACGTACATAACAACTTACATAACT
4843250 TAACTAATAC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
57 27 0.55
59 22 0.45
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (58 bp):
ATAAATTACATAACTTACATAACTCAACATAACGTACATAACAACTTACATAACTCGC
Found at i:4850095 original size:132 final size:132
Alignment explanation
Indices: 4849849--4850119 Score: 359
Period size: 132 Copynumber: 2.1 Consensus size: 132
4849839 TTTTTTATAA
** * *
4849849 TTTT-TAAAAATTATTTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCT
1 TTTTCTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCT
* * * * * ** * *
4849913 ACCGTGCTGGGTTGCAATTTCTCGTTTGCTCGAAATAATCGAGTGTCTCTTTAGAATTTCACTCA
66 ACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCTCTTCAGAATTTCACACA
4849978 TG
131 TG
4849980 TTTTCTAAAAACTT-TTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGAGG-ATAGTGCC
1 TTTTCTAAAAA-TTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGG-GGAATAGTGCC
* *
4850043 CTATCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCTCTTCGGAATTTCACA
64 CTACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCTCTTCAGAATTTCACA
*
4850108 CGTG
129 CATG
4850112 TTTTCTAA
1 TTTTCTAA
4850120 GGCAAGGCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
131 4 0.03
132 113 0.93
133 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (132 bp):
TTTTCTAAAAATTATTTAAAACGAAGGAAATGTTCGATGTTTAGCAATTCGGGGAATAGTGCCCT
ACCGTGCTGGGTTGCAATCTCCCATTTGCTCAAAATAATCGAATACCTCTTCAGAATTTCACACA
TG
Found at i:4864937 original size:20 final size:20
Alignment explanation
Indices: 4864912--4864955 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
4864902 ATAATTATTT
4864912 ATTT-AATTTTTTTACTTATA
1 ATTTAAATTTTTTTA-TTATA
*
4864932 ATTTAAATTTTTTTATTTTA
1 ATTTAAATTTTTTTATTATA
4864952 ATTT
1 ATTT
4864956 TGTACATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTAAATTTTTTTATTATA
Found at i:4869111 original size:17 final size:17
Alignment explanation
Indices: 4869089--4869122 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4869079 TTATAATAAA
4869089 TTAAGCACTATTATTTT
1 TTAAGCACTATTATTTT
4869106 TTAAGCACTATTATTTT
1 TTAAGCACTATTATTTT
4869123 CTCTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
TTAAGCACTATTATTTT
Found at i:4870868 original size:13 final size:13
Alignment explanation
Indices: 4870852--4870891 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
4870842 CAATCTCATA
4870852 TCTCAATTTCAAT
1 TCTCAATTTCAAT
4870865 TCTCAA-TTCAATT
1 TCTCAATTTCAA-T
4870878 TCTC-ATTTC-AT
1 TCTCAATTTCAAT
4870889 TCT
1 TCT
4870892 AATAGTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 14 0.56
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (13 bp):
TCTCAATTTCAAT
Found at i:4870877 original size:18 final size:19
Alignment explanation
Indices: 4870839--4870879 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
4870829 TGGTTCATGT
4870839 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
4870858 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
4870876 TTTC
1 TTTC
4870880 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:4871066 original size:21 final size:21
Alignment explanation
Indices: 4871041--4871126 Score: 109
Period size: 21 Copynumber: 4.1 Consensus size: 21
4871031 CCTGATCAGT
* *
4871041 ATACGACACATAAAGTGTCTG
1 ATACGACACACAAAGTGCCTG
* *
4871062 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
* *
4871083 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
*
4871104 ATACGACACATAAAGTGCCTG
1 ATACGACACACAAAGTGCCTG
4871125 AT
1 AT
4871127 CGATAAAGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.19
Consensus pattern (21 bp):
ATACGACACACAAAGTGCCTG
Found at i:4872790 original size:18 final size:19
Alignment explanation
Indices: 4872767--4872806 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
4872757 CATTTGCTTC
*
4872767 AAAAAT-AATTTCTTATTG
1 AAAAATAAAATTCTTATTG
4872785 AAAAATAAAATTCTTATTG
1 AAAAATAAAATTCTTATTG
4872804 AAA
1 AAA
4872807 TTGGTTCGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
AAAAATAAAATTCTTATTG
Found at i:4879506 original size:278 final size:278
Alignment explanation
Indices: 4879009--4879558 Score: 1064
Period size: 278 Copynumber: 2.0 Consensus size: 278
4878999 TCCCGCAAGA
4879009 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGAA
1 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGAA
*
4879074 TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATGTAGGTGTCTGAACAATAC
66 TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
4879139 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
131 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
4879204 ATAGATGAAAGGAGTATAAATACTAGAACAATATATGGTAGATATCACCTTTACAGGTAGCTGAA
196 ATAGATGAAAGGAGTATAAATACTAGAACAATATATGGTAGATATCACCTTTACAGGTAGCTGAA
4879269 TTAAGCTTGAGTATTAAG
261 TTAAGCTTGAGTATTAAG
* *
4879287 CTTTTGTCACCTGATGTCAGACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGGA
1 CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGAA
*
4879352 TCGAACCATACGAGGTGCATCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
66 TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
4879417 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
131 CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
4879482 ATAGATGAAAGGAGTATAAATACTAGAACAATATATGGTAGATATCACCTTTACAGGTAGCTGAA
196 ATAGATGAAAGGAGTATAAATACTAGAACAATATATGGTAGATATCACCTTTACAGGTAGCTGAA
4879547 TTAAGCTTGAGT
261 TTAAGCTTGAGT
4879559 TCACATATGA
Statistics
Matches: 268, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 268 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (278 bp):
CTTTTGTCACCTGATGTCACACGTCCCCAAAGTTGCAAACAGAACTCTATTGGAAGGTCTTAGAA
TCGAACCATACGAGGTGCACCTTCAGGTGATAGTTTTGAGAGATATATAGGTGTCTGAACAATAC
CGGATTATGAGCATGATGTGTGGTGCGGGGAAATGAGTGTGCCCAATCGGCCAGTCATGACATAT
ATAGATGAAAGGAGTATAAATACTAGAACAATATATGGTAGATATCACCTTTACAGGTAGCTGAA
TTAAGCTTGAGTATTAAG
Found at i:4880795 original size:29 final size:30
Alignment explanation
Indices: 4880732--4880795 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 30
4880722 CATTCAATTA
*
4880732 ATTTTTAAAATTCAAAAAGATCATAAAAATT
1 ATTTTTAAAATT-AAAAAGATCATAAAAATC
*
4880763 ATTTTTAAAAATT-AAAA-ATCATTAAAATC
1 ATTTTT-AAAATTAAAAAGATCATAAAAATC
4880792 ATTT
1 ATTT
4880796 AAAAAGTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 14 0.47
30 4 0.13
31 6 0.20
32 6 0.20
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (30 bp):
ATTTTTAAAATTAAAAAGATCATAAAAATC
Found at i:4884889 original size:3 final size:3
Alignment explanation
Indices: 4884883--4884917 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
4884873 GTAAGAAGAA
*
4884883 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT AAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
4884918 AAAAGAGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:4889559 original size:10 final size:10
Alignment explanation
Indices: 4889544--4889589 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
4889534 AAATATTAAT
4889544 TTTTTAATAA
1 TTTTTAATAA
*
4889554 TTTTT-ATAC
1 TTTTTAATAA
4889563 TTTTTAAT-A
1 TTTTTAATAA
* *
4889572 GTTTTAATGA
1 TTTTTAATAA
4889582 TTTTTAAT
1 TTTTTAAT
4889590 TTTAAGAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 15 0.50
10 15 0.50
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:4889568 original size:19 final size:19
Alignment explanation
Indices: 4889544--4889589 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
4889534 AAATATTAAT
*
4889544 TTTTTAATAATTTTTAT-A
1 TTTTTAATAATTTTAATGA
*
4889562 CTTTTTAATAGTTTTAATGA
1 -TTTTTAATAATTTTAATGA
4889582 TTTTTAAT
1 TTTTTAAT
4889590 TTTAAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 23 0.96
20 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTTAATAATTTTAATGA
Found at i:4901935 original size:16 final size:16
Alignment explanation
Indices: 4901914--4901945 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4901904 TTTGATTCAC
4901914 AGAGAATGGAATTTAT
1 AGAGAATGGAATTTAT
4901930 AGAGAATGGAATTTAT
1 AGAGAATGGAATTTAT
4901946 CTTTTTGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (16 bp):
AGAGAATGGAATTTAT
Found at i:4902181 original size:3 final size:3
Alignment explanation
Indices: 4902173--4902215 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
4902163 AAGTGATTGA
4902173 ATT ATT ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
4902216 TAACATTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4926544 original size:24 final size:24
Alignment explanation
Indices: 4926516--4926561 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4926506 CAATTGATGT
* * *
4926516 TCAGATATAGAATTGGATGCATGA
1 TCAGATACAAAATTAGATGCATGA
4926540 TCAGATACAAAATTAGATGCAT
1 TCAGATACAAAATTAGATGCAT
4926562 ACTCAAATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (24 bp):
TCAGATACAAAATTAGATGCATGA
Found at i:4926571 original size:24 final size:24
Alignment explanation
Indices: 4926526--4926572 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
4926516 TCAGATATAG
* *
4926526 AATTGGATGCATGATCAGATACAA
1 AATTAGATGCATGATCAAATACAA
4926550 AATTAGATGCAT-ACTCAAATACA
1 AATTAGATGCATGA-TCAAATACA
4926573 GAATCATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (24 bp):
AATTAGATGCATGATCAAATACAA
Found at i:4929531 original size:37 final size:36
Alignment explanation
Indices: 4929486--4929556 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
4929476 TTCCAACATG
* *
4929486 TTTTACTCTCTTCGTCTTGTACTTTTCTCTTATTTA
1 TTTTACTCTCTCCATCTTGTACTTTTCTCTTATTTA
4929522 TTTTGACTCTCTCCATCTTGTACTTTTCTCTTATT
1 TTTT-ACTCTCTCCATCTTGTACTTTTCTCTTATT
4929557 AGTGAAATCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 4 0.12
37 28 0.88
ACGTcount: A:0.11, C:0.24, G:0.06, T:0.59
Consensus pattern (36 bp):
TTTTACTCTCTCCATCTTGTACTTTTCTCTTATTTA
Found at i:4931459 original size:43 final size:43
Alignment explanation
Indices: 4931395--4931512 Score: 191
Period size: 43 Copynumber: 2.7 Consensus size: 43
4931385 AATTATTTTC
4931395 AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
1 AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
* * **
4931438 AATATCAAGTCTCGGTAACCCTTAAAATAAACATCATTGATTT
1 AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
*
4931481 AAGATCAAGTCTCGGTGACCCTTGAAGCAAAC
1 AAGATCAAGTCTCGGTGACCCTTAAAGCAAAC
4931513 CACATCCTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (43 bp):
AAGATCAAGTCTCGGTGACCCTTAAAGCAAACATCATTGATTT
Found at i:4933283 original size:12 final size:13
Alignment explanation
Indices: 4933262--4933294 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
4933252 TTTTTATTTC
4933262 TTTA-TTTTCCTT
1 TTTATTTTTCCTT
4933274 TTT-TTTTTCCTT
1 TTTATTTTTCCTT
4933286 TTTATTTTT
1 TTTATTTTT
4933295 TTCTCTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTATTTTTCCTT
Found at i:4938670 original size:20 final size:20
Alignment explanation
Indices: 4938647--4938684 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4938637 ATATATATAC
*
4938647 AATATAAAAATATATAAAAG
1 AATATAAAAATAAATAAAAG
*
4938667 AATATAAATATAAATAAA
1 AATATAAAAATAAATAAA
4938685 GTGAGTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AATATAAAAATAAATAAAAG
Found at i:4938744 original size:12 final size:13
Alignment explanation
Indices: 4938726--4938774 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
4938716 TAAAAATATG
4938726 ATATTTAATAATA
1 ATATTTAATAATA
4938739 AT-TTTAA-AATA
1 ATATTTAATAATA
*
4938750 GTATTTAATATATA
1 ATATTTAATA-ATA
*
4938764 ATATATAATAA
1 ATATTTAATAA
4938775 CAAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:4938773 original size:24 final size:24
Alignment explanation
Indices: 4938718--4938771 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
4938708 ACTTATAATA
*
4938718 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
4938744 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
4938770 AA
1 AA
4938772 TAACAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:4940388 original size:7 final size:7
Alignment explanation
Indices: 4940376--4940439 Score: 62
Period size: 7 Copynumber: 9.1 Consensus size: 7
4940366 GCTTTATTTT
4940376 TATATTA
1 TATATTA
4940383 TATATTA
1 TATATTA
*
4940390 TATAATTG
1 TAT-ATTA
4940398 T-T-TTA
1 TATATTA
4940403 TATATTA
1 TATATTA
4940410 TTCATATTA
1 -T-ATATTA
*
4940419 TTTA-TA
1 TATATTA
4940425 TATATTA
1 TATATTA
4940432 TATATTA
1 TATATTA
4940439 T
1 T
4940440 TTTCACATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
5 3 0.06
6 6 0.13
7 26 0.55
8 6 0.13
9 6 0.13
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:4940405 original size:20 final size:21
Alignment explanation
Indices: 4940375--4940485 Score: 79
Period size: 20 Copynumber: 5.2 Consensus size: 21
4940365 TGCTTTATTT
*
4940375 TTATATTATATATTATATA-A
1 TTATTTTATATATTATATATA
*
4940395 TTGTTTTATATATTAT-TCATA
1 TTATTTTATATATTATAT-ATA
4940416 TTA-TTTATATA-TATTATATA
1 TTATTTTATATATTA-TATATA
* *
4940436 TTATTTTCACATATATACTTTATA
1 TTATTTT-ATATAT-TA-TATATA
* *
4940460 TTATATTATAT-TTATTTTATA
1 TTATTTTATATATTA-TATATA
4940481 TTATT
1 TTATT
4940486 ATGTCATTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
19 3 0.04
20 30 0.41
21 19 0.26
22 5 0.07
23 3 0.04
24 13 0.18
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (21 bp):
TTATTTTATATATTATATATA
Found at i:4940423 original size:13 final size:12
Alignment explanation
Indices: 4940369--4940439 Score: 58
Period size: 13 Copynumber: 5.9 Consensus size: 12
4940359 GTTATTTGCT
4940369 TTATTT-TTATA
1 TTATTTATTATA
*
4940380 TTATATATTATA
1 TTATTTATTATA
* *
4940392 TAATTGTTTTATA
1 TTATT-TATTATA
4940405 -TA-TTATTCATA
1 TTATTTATT-ATA
4940416 TTATTTATATATA
1 TTATTTAT-TATA
*
4940429 TTATATATTAT
1 TTATTTATTAT
4940440 TTTCACATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
10 3 0.06
11 9 0.19
12 14 0.30
13 20 0.43
14 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (12 bp):
TTATTTATTATA
Found at i:4940458 original size:35 final size:33
Alignment explanation
Indices: 4940412--4940477 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 33
4940402 ATATATTATT
4940412 CATATTATTTATA-TATATTATATATTATTTTCA
1 CATATTATTTATATTATATTATAT-TTATTTTCA
4940445 CATATATACTTTATATTATATTATATTTATTTT
1 CATAT-TA-TTTATATTATATTATATTTATTTT
4940478 ATATTATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 5 0.17
34 2 0.07
35 13 0.43
36 10 0.33
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (33 bp):
CATATTATTTATATTATATTATATTTATTTTCA
Found at i:4940496 original size:18 final size:17
Alignment explanation
Indices: 4940460--4940512 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
4940450 ATACTTTATA
*
4940460 TTATATTA-TATTTATT
1 TTATATTATTATTCATT
4940476 TTATATTATTATGTCATT
1 TTATATTATTAT-TCATT
* *
4940494 TTATACTATTATACATT
1 TTATATTATTATTCATT
4940511 TT
1 TT
4940513 TATCTATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 8 0.25
17 9 0.28
18 15 0.47
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (17 bp):
TTATATTATTATTCATT
Found at i:4940694 original size:21 final size:23
Alignment explanation
Indices: 4940668--4940726 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
4940658 ATCATTAATT
*
4940668 ACTTATTTCATAT-TATTCTA-A
1 ACTTATTTCATATATATTATATA
*
4940689 ACTTATATTTATATATATTATATA
1 ACTTAT-TTCATATATATTATATA
4940713 A-TTATTTCAT-TATA
1 ACTTATTTCATATATA
4940727 AATATAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 10 0.31
22 10 0.31
23 10 0.31
24 2 0.06
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.54
Consensus pattern (23 bp):
ACTTATTTCATATATATTATATA
Found at i:4940810 original size:18 final size:17
Alignment explanation
Indices: 4940787--4940842 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
4940777 CAATATATTT
4940787 TTATTCTATATATAATTA
1 TTATTCT-TATATAATTA
*
4940805 TTATTCTTTTATAATT-
1 TTATTCTTATATAATTA
* *
4940821 TTTTTATTATAT-ATTA
1 TTATTCTTATATAATTA
4940837 TATATT
1 T-TATT
4940843 AAATACTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 3 0.10
16 10 0.32
17 11 0.35
18 7 0.23
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTCTTATATAATTA
Found at i:4940868 original size:12 final size:13
Alignment explanation
Indices: 4940824--4940872 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
4940814 TATAATTTTT
*
4940824 TTATTATATATTA
1 TTATTAAATATTA
*
4940837 TATATTAAATACTA
1 T-TATTAAATATTA
4940851 TT-TTAAA-ATTA
1 TTATTAAATATTA
4940862 TTATTAAATAT
1 TTATTAAATAT
4940873 CATATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (13 bp):
TTATTAAATATTA
Found at i:4940887 original size:26 final size:25
Alignment explanation
Indices: 4940831--4940889 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
4940821 TTTTTATTAT
4940831 ATATTATATATTAAATACTATTTTA
1 ATATTATATATTAAATACTATTTTA
* *
4940856 AAATTAT-TATTAAATATCATATTTTT
1 ATATTATATATTAAATA-C-TATTTTA
*
4940882 TTATTATA
1 ATATTATA
4940890 AGTATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 9 0.33
25 7 0.26
26 11 0.41
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (25 bp):
ATATTATATATTAAATACTATTTTA
Found at i:4942179 original size:18 final size:18
Alignment explanation
Indices: 4942148--4942213 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
4942138 AATGATAACA
4942148 ATAT-ATAG-ATAAAAAT
1 ATATAATAGTATAAAAAT
4942164 ATATAATAGTAT-AAAAT
1 ATATAATAGTATAAAAAT
* * *
4942181 GACATAATAATATAAAATAA
1 -ATATAATAGTATAAAA-AT
4942201 ATATAATA-TATAA
1 ATATAATAGTATAA
4942214 TATAAAAGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.10
17 9 0.22
18 17 0.41
19 10 0.24
20 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATAATAGTATAAAAAT
Found at i:4942200 original size:13 final size:13
Alignment explanation
Indices: 4942184--4942300 Score: 59
Period size: 13 Copynumber: 9.1 Consensus size: 13
4942174 ATAAAATGAC
4942184 ATAATAATATAAA
1 ATAATAATATAAA
*
4942197 AT-A-AATATAAT
1 ATAATAATATAAA
4942208 AT-ATAATATAAA
1 ATAATAATATAAA
* *
4942220 AGT-ATTATGTGAAA
1 A-TAATAATAT-AAA
*
4942234 ATAAT-ATATAAT
1 ATAATAATATAAA
*
4942246 ATATATAA-ATAAT
1 ATA-ATAATATAAA
4942259 ATGAATAATATATAAA
1 AT-AAT-A-ATATAAA
* *
4942275 ATAATTATATAAC
1 ATAATAATATAAA
*
4942288 AT-ATAATACAAA
1 ATAATAATATAAA
4942300 A
1 A
4942301 ATAAAAATAA
Statistics
Matches: 82, Mismatches: 12, Indels: 21
0.71 0.10 0.18
Matches are distributed among these distances:
11 10 0.12
12 22 0.27
13 31 0.38
14 9 0.11
15 4 0.05
16 6 0.07
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (13 bp):
ATAATAATATAAA
Found at i:4942210 original size:42 final size:41
Alignment explanation
Indices: 4942142--4942220 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
4942132 ACTTTTAATG
* *
4942142 ATAACAATATATAGATAAAAATATATAATAGTATAAAATGAC
1 ATAACAATATATAAATAAAAATATAT-ATAATATAAAATGAC
* *
4942184 ATAATAATATA-AAATAAATATAATATATAATATAAAA
1 ATAACAATATATAAATAAAAAT-ATATATAATATAAAA
4942221 GTATTATGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 18 0.56
42 14 0.44
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (41 bp):
ATAACAATATATAAATAAAAATATATATAATATAAAATGAC
Found at i:4942293 original size:20 final size:19
Alignment explanation
Indices: 4942147--4942293 Score: 108
Period size: 20 Copynumber: 7.5 Consensus size: 19
4942137 TAATGATAAC
*
4942147 AATATATAGATAAAAATATAT
1 AATATATA-A-AATAATATAT
4942168 AATAGTATAAAATGACATA-AT
1 AATA-TATAAAAT-A-ATATAT
4942189 -A-ATATAAAATAA-ATAT
1 AATATATAAAATAATATAT
*
4942205 AATATATAATATAA-A-AGT
1 AATATATAAAATAATATA-T
* *
4942223 ATTATGTGAAAATAATATAT
1 AATATAT-AAAATAATATAT
4942243 AATATATATAAATAATATGAAT
1 AATATATA-AAATAATAT--AT
4942265 AATATATAAAATAATTATAT
1 AATATATAAAATAA-TATAT
*
4942285 AACATATAA
1 AATATATAA
4942294 TACAAAAATA
Statistics
Matches: 104, Mismatches: 8, Indels: 29
0.74 0.06 0.21
Matches are distributed among these distances:
15 1 0.01
16 3 0.03
17 3 0.03
18 25 0.24
19 8 0.08
20 29 0.28
21 15 0.14
22 20 0.19
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (19 bp):
AATATATAAAATAATATAT
Found at i:4955424 original size:20 final size:20
Alignment explanation
Indices: 4955399--4955436 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4955389 AATTGATTTT
*
4955399 TTTAAAAAATTTAAAAATTA
1 TTTAAAAAATATAAAAATTA
*
4955419 TTTAAAAAGTATAAAAAT
1 TTTAAAAAATATAAAAAT
4955437 GTAAAACTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
TTTAAAAAATATAAAAATTA
Found at i:4959226 original size:26 final size:26
Alignment explanation
Indices: 4959190--4959243 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
4959180 CATATACCCC
4959190 ATAACCTACCAATTCAGCTCATGGGA
1 ATAACCTACCAATTCAGCTCATGGGA
4959216 ATAACCTACCAATTCAGCTCATGGGA
1 ATAACCTACCAATTCAGCTCATGGGA
4959242 AT
1 AT
4959244 CATGGGATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (26 bp):
ATAACCTACCAATTCAGCTCATGGGA
Found at i:4973812 original size:25 final size:25
Alignment explanation
Indices: 4973784--4973834 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
4973774 AACTAGATTC
4973784 AAAACGTGCTATTAGAAGTAGACTA
1 AAAACGTGCTATTAGAAGTAGACTA
4973809 AAAACGTGCTATTAGAAGTAGACTA
1 AAAACGTGCTATTAGAAGTAGACTA
4973834 A
1 A
4973835 CATGCTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.24
Consensus pattern (25 bp):
AAAACGTGCTATTAGAAGTAGACTA
Found at i:4975849 original size:9 final size:10
Alignment explanation
Indices: 4975815--4975862 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
4975805 TTTCCTTTAT
4975815 TTTTATATATA
1 TTTTATATA-A
*
4975826 TTTTTATAAAA
1 -TTTTATATAA
4975837 TTTTAT-TAA
1 TTTTATATAA
*
4975846 TTTTCTATAA
1 TTTTATATAA
4975856 TTTTATA
1 TTTTATA
4975863 GTTTTTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 7 0.23
10 15 0.48
11 1 0.03
12 8 0.26
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTATATAA
Found at i:4988470 original size:47 final size:47
Alignment explanation
Indices: 4988406--4988516 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
4988396 GACATTGAGT
* *
4988406 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
4988453 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
4988500 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
4988517 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:4999190 original size:21 final size:21
Alignment explanation
Indices: 4999166--4999205 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4999156 TTTCGAATTA
4999166 AATCGA-GTAAAATAAAATTTG
1 AATCGATGTAAAA-AAAATTTG
*
4999187 AATCGATTTAAAAAAAATT
1 AATCGATGTAAAAAAAATT
4999206 CAAATTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (21 bp):
AATCGATGTAAAAAAAATTTG
Found at i:4999477 original size:21 final size:21
Alignment explanation
Indices: 4999447--4999496 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
4999437 TAATTAAACA
4999447 TTTT-TAAAA-TTTATATATAT
1 TTTTATAAAATTTTA-ATATAT
* *
4999467 TTTTATAAAATTTTAATTTTT
1 TTTTATAAAATTTTAATATAT
4999488 TTTTATAAA
1 TTTTATAAA
4999497 TATGTTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 18 0.69
22 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATAAAATTTTAATATAT
Found at i:5001555 original size:19 final size:22
Alignment explanation
Indices: 5001517--5001565 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
5001507 TCTCTCACTC
5001517 TCTTTTTTGTCCACTGTTCTAT
1 TCTTTTTTGTCCACTGTTCTAT
* *
5001539 T-TTTTTTGT-CA-TTTTCTCT
1 TCTTTTTTGTCCACTGTTCTAT
5001558 TCTTTTTT
1 TCTTTTTT
5001566 TTTAGTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 8 0.33
22 1 0.04
ACGTcount: A:0.06, C:0.18, G:0.06, T:0.69
Consensus pattern (22 bp):
TCTTTTTTGTCCACTGTTCTAT
Found at i:5004846 original size:23 final size:24
Alignment explanation
Indices: 5004814--5004859 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
5004804 CATAGTAAGA
*
5004814 TTAGAACC-TTGACATGTTTCATT
1 TTAGAACCTTTAACATGTTTCATT
*
5004837 TTAGACCCTTTAACATGTTTCAT
1 TTAGAACCTTTAACATGTTTCAT
5004860 CTTCTTGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (24 bp):
TTAGAACCTTTAACATGTTTCATT
Found at i:5018469 original size:29 final size:29
Alignment explanation
Indices: 5018437--5018498 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
5018427 TAAAAAACAT
*
5018437 TAATATTTTTTAATA-CAATTTAGACACAA
1 TAATATTTGTTAATATC-ATTTAGACACAA
* *
5018466 TAATATTTGTTAATATCGTTTGGACACAA
1 TAATATTTGTTAATATCATTTAGACACAA
5018495 TAAT
1 TAAT
5018499 TTTATATCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 28 0.97
30 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (29 bp):
TAATATTTGTTAATATCATTTAGACACAA
Found at i:5019326 original size:36 final size:36
Alignment explanation
Indices: 5019286--5019379 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 36
5019276 TGCTACCGTT
*
5019286 TTGTTATCATTTTGCTATTATATTACTACTATTTTA
1 TTGTTATTATTTTGCTATTATATTACTACTATTTTA
* * * * *
5019322 TTGTTATTA-TTTGAATCTTGTATAACTATTATTTTA
1 TTGTTATTATTTTG-CTATTATATTACTACTATTTTA
5019358 ---TTATTATTTTGCTATTATATTA
1 TTGTTATTATTTTGCTATTATATTA
5019380 AAGGCATTTA
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
33 13 0.28
34 4 0.09
35 4 0.09
36 25 0.54
ACGTcount: A:0.27, C:0.07, G:0.06, T:0.60
Consensus pattern (36 bp):
TTGTTATTATTTTGCTATTATATTACTACTATTTTA
Found at i:5029329 original size:60 final size:60
Alignment explanation
Indices: 5029195--5029329 Score: 141
Period size: 60 Copynumber: 2.3 Consensus size: 60
5029185 TAAAACCTAC
* * * * * *
5029195 ATTTTTTAAA-TTTTAGAGTTAGAATTAAATTGATAGATTTTATAAATATTAAAGGTTAA
1 ATTTATTAAATTTTTAGAGTTAGAAGTAAAATGAAAAATTTTATAAATAGTAAAGGTTAA
* * *
5029254 AGTTATT-AATCTTTTAGAGTTAGAAGTAAAATGAAAAATTTTGA-AAATAGTGAGGGTTAA
1 ATTTATTAAAT-TTTTAGAGTTAGAAGTAAAATGAAAAATTTT-ATAAATAGTAAAGGTTAA
*
5029314 ATTTGTTAAATTTTTA
1 ATTTATTAAATTTTTA
5029330 TATTTTAGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
58 2 0.03
59 5 0.08
60 50 0.82
61 4 0.07
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (60 bp):
ATTTATTAAATTTTTAGAGTTAGAAGTAAAATGAAAAATTTTATAAATAGTAAAGGTTAA
Found at i:5031694 original size:52 final size:49
Alignment explanation
Indices: 5031516--5031707 Score: 207
Period size: 53 Copynumber: 3.9 Consensus size: 49
5031506 TACACATTGT
* * *
5031516 CACATATCACA-CACCGAAGCCATAGCCCTA-CTATGGTCTTACACGGAT
1 CACATATCACATCACCGATGCCATAGCCC-AGCTATGGTCTTATACGGAA
* *
5031564 CAC--ATCACA-CACCGATGCCATATCCCAGATATGGTCTTATACGGAA
1 CACATATCACATCACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
5031610 TCACATTATCATGTCA-CACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA
1 -CACA-TATCA---CATCACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAA
*
5031664 CACATATCACATTGCACCAATGCCATAGCCCAGCTATGGTCTTA
1 CACATATCACA-T-CACCGATGCCATAGCCCAGCTATGGTCTTA
5031708 AACAGGCGCA
Statistics
Matches: 124, Mismatches: 8, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
45 1 0.01
46 36 0.29
47 3 0.02
48 3 0.02
49 2 0.02
50 4 0.03
52 34 0.27
53 37 0.30
54 4 0.03
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (49 bp):
CACATATCACATCACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
Found at i:5031720 original size:52 final size:52
Alignment explanation
Indices: 5031534--5031724 Score: 164
Period size: 52 Copynumber: 3.8 Consensus size: 52
5031524 ACACACCGAA
* * *
5031534 GCCATAGCCCTA-CTATGGTCTTACAC-GGATCAC--ATCACA---CACCGAT
1 GCCATAGCCC-AGCTATGGTCTTAAACAGGAACACATATCACATTGCACCAAT
* * * ** ** *
5031580 GCCATATCCCAGATATGGTCTTATAC-GGAATCACATTATCATGTCACACCGAT
1 GCCATAGCCCAGCTATGGTCTTAAACAGGAA-CACA-TATCACATTGCACCAAT
* *
5031633 GCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACATTGCACCAAT
1 GCCATAGCCCAGCTATGGTCTTAAACAGGAACACATATCACATTGCACCAAT
**
5031685 GCCATAGCCCAGCTATGGTCTTAAACAGGCGCACATATCA
1 GCCATAGCCCAGCTATGGTCTTAAACAGGAACACATATCA
5031725 TATCTTTTTC
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 24 0.20
47 3 0.03
50 4 0.03
52 48 0.40
53 35 0.29
54 4 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (52 bp):
GCCATAGCCCAGCTATGGTCTTAAACAGGAACACATATCACATTGCACCAAT
Found at i:5044608 original size:46 final size:47
Alignment explanation
Indices: 5044540--5044818 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 47
5044530 TTATCTTCGA
* * * * *
5044540 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
* ** * **
5044586 CATGTTGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
*
5044633 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
*
5044679 CATGTTGCCATGTTATCTTTCAACCATGGTCTTACACA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
* *
5044725 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
*
5044771 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
5044817 CA
1 CA
5044819 GAGAGCACAC
Statistics
Matches: 208, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
46 168 0.81
47 40 0.19
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGT
Found at i:5057992 original size:9 final size:9
Alignment explanation
Indices: 5057978--5058006 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
5057968 GATTCTCACT
5057978 TTATCAAGA
1 TTATCAAGA
5057987 TTATCAAGA
1 TTATCAAGA
5057996 TTATCAAGA
1 TTATCAAGA
5058005 TT
1 TT
5058007 CGATAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (9 bp):
TTATCAAGA
Found at i:5068117 original size:120 final size:120
Alignment explanation
Indices: 5067904--5068144 Score: 455
Period size: 120 Copynumber: 2.0 Consensus size: 120
5067894 ATTCACATTG
*
5067904 TGTGGGCTATGATTGGAGCTTGAACCTTGTAAAAATATGGGCCCACGTAGATCCTGATTGACACT
1 TGTGGGCTATGATTAGAGCTTGAACCTTGTAAAAATATGGGCCCACGTAGATCCTGATTGACACT
5067969 TCGACCATTAATCAGTCTCCCAGGAAAAATGACATTTGCTGGCTCAATCCGCCTT
66 TCGACCATTAATCAGTCTCCCAGGAAAAATGACATTTGCTGGCTCAATCCGCCTT
*
5068024 TGTGGGCTATGATTAGAGCTTGAACCTTGTAAAAATATGGGCCCACGTAGATCCTGATTGACATT
1 TGTGGGCTATGATTAGAGCTTGAACCTTGTAAAAATATGGGCCCACGTAGATCCTGATTGACACT
*
5068089 TCGACCATTAGTCAGTCTCCCAGGAAAAATGACATTTGCTGGCTCAATCCGCCTT
66 TCGACCATTAATCAGTCTCCCAGGAAAAATGACATTTGCTGGCTCAATCCGCCTT
5068144 T
1 T
5068145 CTTCTGACCT
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (120 bp):
TGTGGGCTATGATTAGAGCTTGAACCTTGTAAAAATATGGGCCCACGTAGATCCTGATTGACACT
TCGACCATTAATCAGTCTCCCAGGAAAAATGACATTTGCTGGCTCAATCCGCCTT
Found at i:5071553 original size:28 final size:28
Alignment explanation
Indices: 5071522--5071580 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
5071512 TCCTACCTTG
5071522 ATTTAAAATATAAATTTTAAAATTATTA
1 ATTTAAAATATAAATTTTAAAATTATTA
** * *
5071550 ATTTTTACTCTAAATTTTAAAATTATTA
1 ATTTAAAATATAAATTTTAAAATTATTA
5071578 ATT
1 ATT
5071581 ATATTCAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (28 bp):
ATTTAAAATATAAATTTTAAAATTATTA
Found at i:5071554 original size:15 final size:15
Alignment explanation
Indices: 5071523--5071580 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
5071513 CCTACCTTGA
*
5071523 TTTAAAA-TATAAAT
1 TTTAAAATTATTAAT
5071537 TTTAAAATTATTAAT
1 TTTAAAATTATTAAT
* *
5071552 TTT-TACTCTA--AAT
1 TTTAAAAT-TATTAAT
5071565 TTTAAAATTATTAAT
1 TTTAAAATTATTAAT
5071580 T
1 T
5071581 ATATTCAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
13 8 0.24
14 11 0.32
15 15 0.44
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTAAAATTATTAAT
Found at i:5079131 original size:21 final size:21
Alignment explanation
Indices: 5079101--5079140 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
5079091 TAACGGGATT
5079101 GCTGACGTGGCAAGTTAACCA
1 GCTGACGTGGCAAGTTAACCA
*
5079122 GCTGATGTGGCAAGTTAAC
1 GCTGACGTGGCAAGTTAAC
5079141 TTGCCACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACCA
Found at i:5079605 original size:12 final size:12
Alignment explanation
Indices: 5079590--5079638 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
5079580 GGTTATTTCT
5079590 ATTTCAATTTTA
1 ATTTCAATTTTA
* *
5079602 ATTTCGATTCTA
1 ATTTCAATTTTA
* *
5079614 ATTTCGATTTTG
1 ATTTCAATTTTA
5079626 ATTTCAATTTTA
1 ATTTCAATTTTA
5079638 A
1 A
5079639 AACACTCATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (12 bp):
ATTTCAATTTTA
Found at i:5079634 original size:18 final size:18
Alignment explanation
Indices: 5079584--5079635 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
5079574 ATTTAGGGTT
* *
5079584 ATTTCTATTTCAATTTTA
1 ATTTCGATTTCAATTTCA
*
5079602 ATTTCGA-TTCTAATTTCG
1 ATTTCGATTTC-AATTTCA
*
5079620 ATTTTGATTTCAATTT
1 ATTTCGATTTCAATTT
5079636 TAAAACACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 3 0.11
18 22 0.79
19 3 0.11
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.58
Consensus pattern (18 bp):
ATTTCGATTTCAATTTCA
Found at i:5079658 original size:6 final size:6
Alignment explanation
Indices: 5079647--5079707 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
5079637 AAAACACTCA
*** * * * * *
5079647 TTGATT TTGATT TTGATT CCAATT TTGATC TCGATT TAGATT TAGAAT
1 TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT
5079695 TTGATT TTGATT T
1 TTGATT TTGATT T
5079708 CGATATGGAT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.56
Consensus pattern (6 bp):
TTGATT
Found at i:5079832 original size:48 final size:48
Alignment explanation
Indices: 5079762--5079923 Score: 245
Period size: 48 Copynumber: 3.4 Consensus size: 48
5079752 GCCATGTGCA
* * * *
5079762 TGATGTTTATTGTTTGTTTCTGCCATTGTATGAATGCCATTATCAAAT
1 TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
* *
5079810 TGATGTGTATTTTGTATATCTGCCATTATATGAATGCCATTATCAAAT
1 TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
*
5079858 TGATGTGTATTGTGTATATCTGCCATTGTATGAATG-CATTATCAAAC
1 TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
*
5079905 TGATGTTTATTGTGTATAT
1 TGATGTGTATTGTGTATAT
5079924 TGTGTATATC
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 28 0.27
48 76 0.73
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (48 bp):
TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
Found at i:5081971 original size:43 final size:43
Alignment explanation
Indices: 5081880--5082143 Score: 419
Period size: 43 Copynumber: 6.2 Consensus size: 43
5081870 TTGCTGATCA
* *
5081880 CATGCACTGATTGTTGGAAAGCTATTGACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
*
5081922 TATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
5081965 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
*
5082008 TATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
*
5082051 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* * * *
5082094 TATGCAATGATTGTTGG--TG-TGTTGCCTATTTTTCAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
5082134 CATGCAATGA
1 CATGCAATGA
5082144 GTTTTTTTTA
Statistics
Matches: 209, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 28 0.13
41 1 0.00
42 27 0.13
43 153 0.73
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
Found at i:5082842 original size:21 final size:21
Alignment explanation
Indices: 5082808--5082870 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
5082798 GTCTGAACCA
* *
5082808 AGCAACAGGCTACCCCAAGTC
1 AGCAAGAGGCTACCCCAACTC
*
5082829 AGCAAGAGGGTACCCCAACTC
1 AGCAAGAGGCTACCCCAACTC
* *
5082850 AAC-A-AGG-TGCCCCAACTC
1 AGCAAGAGGCTACCCCAACTC
5082868 AGC
1 AGC
5082871 TACCTACTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
18 12 0.33
19 3 0.08
20 1 0.03
21 20 0.56
ACGTcount: A:0.33, C:0.37, G:0.21, T:0.10
Consensus pattern (21 bp):
AGCAAGAGGCTACCCCAACTC
Found at i:5083381 original size:59 final size:59
Alignment explanation
Indices: 5083287--5083423 Score: 193
Period size: 59 Copynumber: 2.3 Consensus size: 59
5083277 TATTTATTAT
* * *
5083287 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACTAGCAGCCATATATA
1 CCAACTGTTAAGCAATTTGCATACCAACTGTTATCTCTTCTAACCAGCAGCCATATATA
* * * * *
5083346 CTAACTGTTAAGCAATTTGCATATCAATTGTTATCTCTTCTAACCAGTAGCCATGTATA
1 CCAACTGTTAAGCAATTTGCATACCAACTGTTATCTCTTCTAACCAGCAGCCATATATA
*
5083405 CCAAGTGTTAAGCAATTTG
1 CCAACTGTTAAGCAATTTG
5083424 TAAACAACAT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 68 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (59 bp):
CCAACTGTTAAGCAATTTGCATACCAACTGTTATCTCTTCTAACCAGCAGCCATATATA
Found at i:5083501 original size:28 final size:30
Alignment explanation
Indices: 5083469--5083527 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
5083459 AGCCATTTTT
5083469 AACAC-ATGT-TAAGCAACAAAAATATTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
* * *
5083497 AACACAATTTGTAATCAACAAAAATTTTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
5083527 A
1 A
5083528 TTTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (30 bp):
AACACAATGTGTAAGCAACAAAAATATTCC
Found at i:5083995 original size:20 final size:20
Alignment explanation
Indices: 5083970--5084011 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
5083960 TCCATTTTTC
*
5083970 CTCTT-CTCCTTCTTCTTCTT
1 CTCTTCCTCC-TCCTCTTCTT
5083990 CTCTTCCTCCTCCTCTTCTT
1 CTCTTCCTCCTCCTCTTCTT
5084010 CT
1 CT
5084012 TTTTTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (20 bp):
CTCTTCCTCCTCCTCTTCTT
Found at i:5086495 original size:18 final size:19
Alignment explanation
Indices: 5086456--5086496 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
5086446 TTGACATAAA
*
5086456 ATAA-TAATTCATTAATAT
1 ATAATTAATTCATTAATAG
*
5086474 ATAATTAATT-ATTATTAG
1 ATAATTAATTCATTAATAG
5086492 ATAAT
1 ATAAT
5086497 AACAAAAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
ATAATTAATTCATTAATAG
Found at i:5089249 original size:37 final size:37
Alignment explanation
Indices: 5089196--5089287 Score: 100
Period size: 37 Copynumber: 2.5 Consensus size: 37
5089186 ATTCCAAAAA
*
5089196 TAATA-TTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTTATCTTAATAGTATT-ATATT-AATTTAATAT
*
5089232 TAATATTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATATTTATCTTAATAGTATTATATTAATTTAATAT
*
5089269 TAAAATGATTATCTTAATA
1 TAATAT--TTATCTTAATA
5089288 TTAAATTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.27
37 22 0.46
38 2 0.04
39 11 0.23
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (37 bp):
TAATATTTATCTTAATAGTATTATATTAATTTAATAT
Found at i:5089271 original size:11 final size:11
Alignment explanation
Indices: 5089196--5089271 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
5089186 ATTCCAAAAA
*
5089196 TAATATTATTT
1 TAATATTAATT
5089207 TAATAGTTTAATAT
1 TAATA--TTAAT-T
5089221 TAA-ATTTAATT
1 TAATA-TTAATT
*
5089232 TAATATTTATCT
1 TAATATTAAT-T
*
5089244 TAATAGT-ATT
1 TAATATTAATT
5089254 T--TATTAATT
1 TAATATTAATT
5089263 TAATATTAA
1 TAATATTAA
5089272 AATGATTATC
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 21 0.40
12 14 0.26
13 5 0.09
14 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:5092633 original size:33 final size:32
Alignment explanation
Indices: 5092588--5092649 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
5092578 AATATGTAGA
*
5092588 TTGAATAAAATCAAAGTTTCATATATATACAT
1 TTGAACAAAATCAAAGTTTCATATATATACAT
*
5092620 TTGAACAACAATCAAAGTTTCATGTATATA
1 TTGAACAA-AATCAAAGTTTCATATATATA
5092650 ATTGTACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 7 0.26
33 20 0.74
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.35
Consensus pattern (32 bp):
TTGAACAAAATCAAAGTTTCATATATATACAT
Found at i:5093519 original size:9 final size:8
Alignment explanation
Indices: 5093492--5093517 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
5093482 ACATTTAGTG
5093492 AATAAAAA
1 AATAAAAA
5093500 AATAAAAA
1 AATAAAAA
5093508 AATAAAAA
1 AATAAAAA
5093516 AA
1 AA
5093518 ATTGTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AATAAAAA
Found at i:5100016 original size:53 final size:53
Alignment explanation
Indices: 5099928--5100078 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
5099918 CTTACACGGT
* * *
5099928 TCACATATCATACCGAAGCCATATCCTAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
5099983 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
5100036 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
5100079 GCACACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:5104102 original size:20 final size:19
Alignment explanation
Indices: 5104079--5104132 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
5104069 AATTAAATTC
*
5104079 TAAAAAGTTAAAATAATATA
1 TAAAAAGTTAAAAT-ATAAA
* *
5104099 TAAAAATTTGAAAATTTAAA
1 TAAAAAGTT-AAAATATAAA
*
5104119 AAAAAAGTTAAAAT
1 TAAAAAGTTAAAAT
5104133 TTAGAAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 5 0.18
20 18 0.64
21 5 0.18
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30
Consensus pattern (19 bp):
TAAAAAGTTAAAATATAAA
Found at i:5107830 original size:59 final size:58
Alignment explanation
Indices: 5107767--5107954 Score: 157
Period size: 59 Copynumber: 3.2 Consensus size: 58
5107757 ATTTTATTAA
*
5107767 ATCATATATTTTAATTAAAATATATTTAATAATAACTATGTTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAA-TATGTTAAATTATATTTTATAGT
* * ** * * * * * *
5107826 ATCATATATTATGATTTGAGTAAATTCATATAAGAATA--TTAATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTA-ATAATAATATGTTAA--ATTA-TATTTTA-TAGT
* * * *
5107886 ATTATATATGTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAA-TATGTTAAATTATATTTTATAGT
5107945 ATCATATATT
1 ATCATATATT
5107955 ATGATTTGAG
Statistics
Matches: 94, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
57 4 0.04
58 2 0.02
59 47 0.50
60 35 0.37
61 2 0.02
62 4 0.04
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.49
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATAATAATATGTTAAATTATATTTTATAGT
Found at i:5107920 original size:15 final size:16
Alignment explanation
Indices: 5107889--5107930 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
5107879 TTATTAAATT
*
5107889 ATATATGTTAATTATA
1 ATATATGTTAATAATA
5107905 ATATAT-TTAATAATA
1 ATATATGTTAATAATA
5107920 AT-TATGTTAAT
1 ATATATGTTAAT
5107931 TTATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 3 0.12
15 15 0.62
16 6 0.25
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
ATATATGTTAATAATA
Found at i:5107940 original size:119 final size:120
Alignment explanation
Indices: 5107697--5108052 Score: 624
Period size: 119 Copynumber: 3.0 Consensus size: 120
5107687 ATCAGTTTTC
*
5107697 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATAAAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
* * * *
5107762 ATTAAATCATATATTTTAATTAAAATATATTTAATAATAACTATGTTAAATTATC
66 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATA
5107817 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATT-AGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
* *
5107881 ATTAAATTATATATGTTAATTATAATATATTTAATAATAATTATGTTAATTTATA
66 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATA
5107936 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
*
5108001 ATTAAATTATATATTTTAATTATAATATATTTAATAGTAATTATGTTTAAAT
66 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
5108053 ATGATTAAAT
Statistics
Matches: 224, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
119 113 0.50
120 106 0.47
121 5 0.02
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (120 bp):
TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATA
Found at i:5108287 original size:16 final size:16
Alignment explanation
Indices: 5108266--5108333 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
5108256 GATTTGCTAT
5108266 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
5108282 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
5108298 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
5108314 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
5108330 TACA
1 TACA
5108334 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:5109885 original size:17 final size:17
Alignment explanation
Indices: 5109853--5109886 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
5109843 CCAAAATCTC
5109853 ATTTATTTTTTATATCA
1 ATTTATTTTTTATATCA
5109870 ATTT-TTTTTTACTATCA
1 ATTTATTTTTTA-TATCA
5109887 TTGTAGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
ATTTATTTTTTATATCA
Found at i:5114518 original size:14 final size:14
Alignment explanation
Indices: 5114484--5114531 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
5114474 GTACGAATGG
* *
5114484 AATGGTAGGAACGA
1 AATGGTATGAACAA
*
5114498 AAGGGTATGAACAA
1 AATGGTATGAACAA
*
5114512 AATGGTATGAGCAA
1 AATGGTATGAACAA
*
5114526 ATTGGT
1 AATGGT
5114532 CGGTTTAGGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.42, C:0.06, G:0.31, T:0.21
Consensus pattern (14 bp):
AATGGTATGAACAA
Found at i:5115839 original size:30 final size:30
Alignment explanation
Indices: 5115753--5115850 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
5115743 TTAAACTAAA
* *
5115753 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
5115783 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
5115813 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
5115843 ATGAGCTA
1 ATGAGCTA
5115851 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:5118212 original size:5 final size:5
Alignment explanation
Indices: 5118202--5118257 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
5118192 CTCTTGCCTC
*
5118202 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-CTTT TCTTT
5118248 TCTTT TCTTT
1 TCTTT TCTTT
5118258 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 4 0.09
5 30 0.68
6 9 0.20
7 1 0.02
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:5118247 original size:11 final size:10
Alignment explanation
Indices: 5118202--5118257 Score: 62
Period size: 11 Copynumber: 5.5 Consensus size: 10
5118192 CTCTTGCCTC
5118202 TCTTTTCTTT
1 TCTTTTCTTT
5118212 T-TATTTCGTTT
1 TCT-TTTC-TTT
*
5118223 TCTTTT-TCT
1 TCTTTTCTTT
5118232 TCTTTTGCTTT
1 TCTTTT-CTTT
5118243 TCTTTTCTTT
1 TCTTTTCTTT
5118253 TCTTT
1 TCTTT
5118258 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
9 9 0.23
10 14 0.36
11 15 0.38
12 1 0.03
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (10 bp):
TCTTTTCTTT
Found at i:5119625 original size:14 final size:14
Alignment explanation
Indices: 5119591--5119625 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
5119581 GTACGAATGG
*
5119591 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
5119605 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
5119619 AATGGTA
1 AATGGTA
5119626 TAAACAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.34, T:0.14
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:5120819 original size:30 final size:30
Alignment explanation
Indices: 5120733--5120830 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
5120723 TTAAACTAAA
* *
5120733 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
5120763 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
5120793 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
5120823 ATGAGCTA
1 ATGAGCTA
5120831 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:5126908 original size:21 final size:21
Alignment explanation
Indices: 5126882--5126933 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
5126872 CATCTAATAG
*
5126882 TGTTCACACACACCATAAACA
1 TGTTCACACACAACATAAACA
** *
5126903 TGTTCACACTTAACATAAAGA
1 TGTTCACACACAACATAAACA
5126924 TGTTCACACA
1 TGTTCACACA
5126934 TAGGTCATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (21 bp):
TGTTCACACACAACATAAACA
Found at i:5128362 original size:18 final size:18
Alignment explanation
Indices: 5128311--5128362 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
5128301 TAGTTGCTCT
*
5128311 ATAACAGTCAATTATACA
1 ATAACAGTCAATTATTCA
*
5128329 ATAACAGTCATTTATTCA
1 ATAACAGTCAATTATTCA
*
5128347 ATAACAGTTAATTATT
1 ATAACAGTCAATTATT
5128363 TCGTAGCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:5132892 original size:17 final size:17
Alignment explanation
Indices: 5132868--5132912 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
5132858 CGGGCCATAC
5132868 AAAAACCAAAA-AACAAA
1 AAAAACCAAAACAA-AAA
*
5132885 ATAAACCAAAACAAAAA
1 AAAAACCAAAACAAAAA
5132902 AAAAACCAAAA
1 AAAAACCAAAA
5132913 TTAAAGTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 23 0.92
18 2 0.08
ACGTcount: A:0.80, C:0.18, G:0.00, T:0.02
Consensus pattern (17 bp):
AAAAACCAAAACAAAAA
Found at i:5141723 original size:18 final size:18
Alignment explanation
Indices: 5141700--5141751 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
5141690 AATTTATATG
5141700 AAAATCCCTAAAGGATTT
1 AAAATCCCTAAAGGATTT
5141718 AAAATCCCTAAAGGATTT
1 AAAATCCCTAAAGGATTT
* *
5141736 AAAATTCCAAAAGGAT
1 AAAATCCCTAAAGGAT
5141752 ATACAGTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.25
Consensus pattern (18 bp):
AAAATCCCTAAAGGATTT
Found at i:5143378 original size:19 final size:19
Alignment explanation
Indices: 5143356--5143394 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
5143346 TCAATCTCTC
5143356 TTTATTTTATAACATTATT
1 TTTATTTTATAACATTATT
5143375 TTTATTTTATAACATTATT
1 TTTATTTTATAACATTATT
5143394 T
1 T
5143395 ACATGTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTATTTTATAACATTATT
Found at i:5143857 original size:7 final size:7
Alignment explanation
Indices: 5143845--5143869 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
5143835 AAGTAATCCT
5143845 TACAGGA
1 TACAGGA
5143852 TACAGGA
1 TACAGGA
5143859 TACAGGA
1 TACAGGA
5143866 TACA
1 TACA
5143870 AGAGCCTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (7 bp):
TACAGGA
Found at i:5145997 original size:1 final size:1
Alignment explanation
Indices: 5145991--5146021 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
5145981 ATGAACTAAG
5145991 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5146022 GGTGTTGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:5151052 original size:17 final size:17
Alignment explanation
Indices: 5151030--5151063 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5151020 TGATCAAATG
5151030 ATAATTAAAAAAATTAT
1 ATAATTAAAAAAATTAT
**
5151047 ATAATTAGTAAAATTAT
1 ATAATTAAAAAAATTAT
5151064 GTCAATTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATAATTAAAAAAATTAT
Found at i:5152047 original size:17 final size:17
Alignment explanation
Indices: 5152027--5152060 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5152017 AGGTTTAGGT
5152027 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
5152044 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
5152061 GAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:5161079 original size:19 final size:20
Alignment explanation
Indices: 5161038--5161079 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
5161028 GATAGAGTTT
5161038 TTTTGAAAGGATAATATGAG
1 TTTTGAAAGGATAATATGAG
* *
5161058 TTTTGAGAGGATGATA-GAG
1 TTTTGAAAGGATAATATGAG
5161077 TTT
1 TTT
5161080 ACATCACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (20 bp):
TTTTGAAAGGATAATATGAG
Found at i:5170673 original size:12 final size:12
Alignment explanation
Indices: 5170656--5170681 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5170646 AAGCTACTTA
5170656 TATAGTCAATGT
1 TATAGTCAATGT
5170668 TATAGTCAATGT
1 TATAGTCAATGT
5170680 TA
1 TA
5170682 ACAGCAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
TATAGTCAATGT
Found at i:5174511 original size:17 final size:17
Alignment explanation
Indices: 5174489--5174522 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
5174479 GAGTTTACTT
5174489 ACTATTTCTCTTTCTTC
1 ACTATTTCTCTTTCTTC
5174506 ACTATTTCTCTTTCTTC
1 ACTATTTCTCTTTCTTC
5174523 TTTGTAGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.29, G:0.00, T:0.59
Consensus pattern (17 bp):
ACTATTTCTCTTTCTTC
Found at i:5175856 original size:14 final size:15
Alignment explanation
Indices: 5175827--5175856 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5175817 TATAAGTGTT
5175827 AAAAAAAGTCTAAAA
1 AAAAAAAGTCTAAAA
*
5175842 AAAAAAATTCTAAAA
1 AAAAAAAGTCTAAAA
5175857 TGTTTTAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.07, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAAAAAGTCTAAAA
Found at i:5184078 original size:15 final size:17
Alignment explanation
Indices: 5184058--5184089 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5184048 CTATGCTTTC
5184058 GTCA-TTGGA-AGCTAT
1 GTCATTTGGACAGCTAT
5184073 GTCATTTGGACAGCTAT
1 GTCATTTGGACAGCTAT
5184090 TGCTGGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 5 0.33
17 6 0.40
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (17 bp):
GTCATTTGGACAGCTAT
Found at i:5185438 original size:6 final size:6
Alignment explanation
Indices: 5185427--5185458 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
5185417 TTAAAAAAAT
5185427 AAACCA AAACCA AAACCA AAACCA AAA-CA AAA
1 AAACCA AAACCA AAACCA AAACCA AAACCA AAA
5185459 TACAGCTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACCA
Found at i:5190683 original size:5 final size:5
Alignment explanation
Indices: 5190673--5190697 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
5190663 TTATACAATG
5190673 TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA
5190698 ATTTGTGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:5195747 original size:15 final size:15
Alignment explanation
Indices: 5195727--5195756 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5195717 CATTTTATTT
*
5195727 ATATTAGGATAATTA
1 ATATTAAGATAATTA
5195742 ATATTAAGATAATTA
1 ATATTAAGATAATTA
5195757 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:5195784 original size:27 final size:26
Alignment explanation
Indices: 5195723--5195785 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
5195713 ACTCCATTTT
5195723 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
5195750 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
5195778 ATTTTATT
1 ATTTTATT
5195786 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:5195800 original size:10 final size:10
Alignment explanation
Indices: 5195781--5195812 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
5195771 TTTTAGGATT
5195781 TTAT-TTTAA
1 TTATCTTTAA
5195790 TTATCTTTAA
1 TTATCTTTAA
5195800 TTATCTTTAA
1 TTATCTTTAA
5195810 TTA
1 TTA
5195813 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:5199605 original size:18 final size:18
Alignment explanation
Indices: 5199527--5199615 Score: 67
Period size: 18 Copynumber: 4.9 Consensus size: 18
5199517 ATATACACAT
*
5199527 TAAAAAATATA-AAAATG
1 TAAAAAATATATAAAATA
*
5199544 GAAATAAATATATAAAATA
1 TAAA-AAATATATAAAATA
** *
5199563 TTCAAAATATTCATAAAATC
1 TAAAAAATA-T-ATAAAATA
*
5199583 T-AAAAATATATAAATTA
1 TAAAAAATATATAAAATA
5199600 TAAAAAA-ATTATAAAA
1 TAAAAAATA-TATAAAA
5199616 AAATTACAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
17 11 0.20
18 24 0.43
19 13 0.23
20 8 0.14
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAAAATATATAAAATA
Found at i:5199615 original size:10 final size:11
Alignment explanation
Indices: 5199594--5199626 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5199584 AAAAATATAT
5199594 AAATTATAAAA
1 AAATTATAAAA
5199605 AAATTATAAAA
1 AAATTATAAAA
*
5199616 AAATTACAAAA
1 AAATTATAAAA
5199627 GATTTTAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (11 bp):
AAATTATAAAA
Found at i:5201921 original size:20 final size:20
Alignment explanation
Indices: 5201884--5201921 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
5201874 GATCGAGTTA
*
5201884 CAGAATATTATAGTACAAAG
1 CAGAATATTATAGAACAAAG
5201904 CAGAATATTTATA-AACAA
1 CAGAATA-TTATAGAACAA
5201922 TTTAACAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (20 bp):
CAGAATATTATAGAACAAAG
Found at i:5206151 original size:41 final size:41
Alignment explanation
Indices: 5206106--5206225 Score: 179
Period size: 41 Copynumber: 2.9 Consensus size: 41
5206096 CACATACCCG
*
5206106 TGGGCTTACCGTGTGTCACACAAGTCCTAGACACACGCCCA
1 TGGGCTTACCGTGTGTCACACAAGGCCTAGACACACGCCCA
* *
5206147 TGGGCTTACCGTGTGTCAGA-AACGGCCTAGACACACGCCCG
1 TGGGCTTACCGTGTGTCACACAA-GGCCTAGACACACGCCCA
* *
5206188 TGGGCTTACCGTGTGTCATACACGGCCTAGACACACGC
1 TGGGCTTACCGTGTGTCACACAAGGCCTAGACACACGC
5206226 TCATATGTCT
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
40 2 0.03
41 69 0.96
42 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.19
Consensus pattern (41 bp):
TGGGCTTACCGTGTGTCACACAAGGCCTAGACACACGCCCA
Found at i:5207879 original size:50 final size:50
Alignment explanation
Indices: 5207802--5208031 Score: 234
Period size: 50 Copynumber: 4.6 Consensus size: 50
5207792 ATTGTGAATA
*
5207802 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * * **
5207852 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-T
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGT
* * * *
5207903 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGT
* * * * *
5207953 CACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * *
5208002 CGCACGTGTAGTGCTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
5208032 TACATATCAG
Statistics
Matches: 150, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 30 0.20
50 76 0.51
51 35 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
Found at i:5208010 original size:101 final size:99
Alignment explanation
Indices: 5207801--5207989 Score: 254
Period size: 101 Copynumber: 1.9 Consensus size: 99
5207791 CATTGTGAAT
* * *
5207801 ACACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTAC
1 ACAC-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTAC
* *
5207866 TAAGTGCAGGCTACTATGCGTACTCAATGACTTCG
65 TAAATGCAGGCTACTACGCGTACTCAATGACTTCG
* * *
5207901 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACGTGTGTAGT
1 A-CAC-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTGAAGTCACATGTGTAGT
*
5207965 ACTAAATGCAGGCTACTACGTGTAC
63 ACTAAATGCAGGCTACTACGCGTAC
5207990 CGGATTGTTG
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 2 0.03
101 75 0.97
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (99 bp):
ACACTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
AAATGCAGGCTACTACGCGTACTCAATGACTTCG
Found at i:5208161 original size:27 final size:26
Alignment explanation
Indices: 5208131--5208182 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
5208121 AGAAAAATTG
5208131 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
*
5208158 ATAAAGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
5208183 GTTTATGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
26 7 0.30
27 9 0.39
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:5214156 original size:32 final size:33
Alignment explanation
Indices: 5214068--5214181 Score: 106
Period size: 33 Copynumber: 3.5 Consensus size: 33
5214058 GATGTACATT
* **
5214068 CCTTTCCAAGTAGTACACACAAAATATACATTT
1 CCTTTCCAAGTAGTACACACAAAGTATACATAA
* * * * *
5214101 TCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTAGTACACACAAAGTATACATAA
*
5214134 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTCCAAGTAGTACACACAAAGTATACATAA
* *
5214166 CCTTTTCAAGTTGTAC
1 CCTTTCCAAGTAGTAC
5214182 TATTTGGGTA
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
32 29 0.45
33 34 0.53
34 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTAGTACACACAAAGTATACATAA
Found at i:5216228 original size:47 final size:47
Alignment explanation
Indices: 5216150--5216459 Score: 467
Period size: 47 Copynumber: 6.6 Consensus size: 47
5216140 CCCTTCGGGA
* * * * * *
5216150 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
5216197 CCTGTCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
5216244 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
5216291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
5216338 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
5216387 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
5216434 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
5216460 CACAATTATC
Statistics
Matches: 239, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 194 0.81
49 45 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:5216388 original size:96 final size:96
Alignment explanation
Indices: 5216150--5216459 Score: 488
Period size: 96 Copynumber: 3.3 Consensus size: 96
5216140 CCCTTCGGGA
* * * * *
5216150 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
5216213 ACTTTCACATTCATCATATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
5216244 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
5216307 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
5216338 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
5216403 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
5216434 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
5216460 CACAATTATC
Statistics
Matches: 198, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
93 1 0.01
94 95 0.48
96 102 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Done.