Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 172 of 332
Found at i:56758904 original size:30 final size:30
Alignment explanation
Indices: 56758870--56758932 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
56758860 GGAATGTAAT
56758870 ATCCTCTTCATCATCCAAGGGGAGATGTAC
1 ATCCTCTTCATCATCCAAGGGGAGATGTAC
56758900 ATCCTCTTCATCATCCAAGGGGAGATGTAC
1 ATCCTCTTCATCATCCAAGGGGAGATGTAC
56758930 ATC
1 ATC
56758933 TTTTTCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (30 bp):
ATCCTCTTCATCATCCAAGGGGAGATGTAC
Found at i:56763101 original size:26 final size:26
Alignment explanation
Indices: 56763065--56763126 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
56763055 TTCATAACTA
56763065 CTCAGCTGAAAATGGTAAAAAAAACC
1 CTCAGCTGAAAATGGTAAAAAAAACC
56763091 CTCAGCTGAAAATGGTAAAAAAAACC
1 CTCAGCTGAAAATGGTAAAAAAAACC
56763117 CTCAGCTGAA
1 CTCAGCTGAA
56763127 GCTTCACCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.47, C:0.21, G:0.16, T:0.16
Consensus pattern (26 bp):
CTCAGCTGAAAATGGTAAAAAAAACC
Found at i:56766689 original size:22 final size:21
Alignment explanation
Indices: 56766651--56766691 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
56766641 CACTTGACAC
* *
56766651 AGGGGCATACGCTCGTGTGGA
1 AGGGGCACACGCCCGTGTGGA
56766672 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCGTGTG
56766692 ATCAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGGA
Found at i:56767923 original size:47 final size:47
Alignment explanation
Indices: 56767832--56767923 Score: 105
Period size: 47 Copynumber: 2.0 Consensus size: 47
56767822 GGGATAAGGT
* * * * **
56767832 GTCGATGCCGTGTCCTAGACACGGTCTTACATTGGTTCATATCTCAA
1 GTCGAAGCCATGTCCCAGACACGGTCTTACACTGACTCATATCTCAA
*
56767879 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTC
1 GTCGAAGCCATGTCCCAGACACGGTCTTACACTGACTCAT-ATCTC
56767924 GTAGCTGACG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
46 2 0.05
47 35 0.95
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GTCGAAGCCATGTCCCAGACACGGTCTTACACTGACTCATATCTCAA
Found at i:56768014 original size:46 final size:46
Alignment explanation
Indices: 56767933--56768101 Score: 157
Period size: 46 Copynumber: 3.6 Consensus size: 46
56767923 CGTAGCTGAC
* * * *
56767933 GCATGTCCTAAACATGTTTTACACTGGCTTACGTCT-AGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTAAGAGGCCGAT
* *
56767979 GCATGTCCCAGACATGTCTTACACTAGCATTCGTCTCA-ATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTAAGAGGCCGAT
* * * * *
56768025 GCCATATCCCAGAAATGGTCTTACACTGGC-TC-TCATAATGTGGCCGTT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCTTCGTC-TAA-GAGGCCGAT
56768073 GCATGTCCCAGACATGTCTTACACTAGCT
1 GCATGTCCCAGACATGTCTTACACTAGCT
56768102 CACAATAGCC
Statistics
Matches: 100, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
45 2 0.02
46 53 0.53
47 27 0.27
48 18 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCTTCGTCTAAGAGGCCGAT
Found at i:56769365 original size:17 final size:17
Alignment explanation
Indices: 56769343--56769375 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
56769333 GATCTTCGAC
56769343 GAGCTTCCAAACTGATT
1 GAGCTTCCAAACTGATT
56769360 GAGCTTCCAAACTGAT
1 GAGCTTCCAAACTGAT
56769376 CGAAATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (17 bp):
GAGCTTCCAAACTGATT
Found at i:56771204 original size:40 final size:39
Alignment explanation
Indices: 56771142--56771440 Score: 415
Period size: 40 Copynumber: 7.5 Consensus size: 39
56771132 AAGCCAAGTA
* * * *
56771142 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
* *
56771181 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
56771221 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
56771261 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
56771301 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
* *
56771341 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
56771381 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACT--CGCACAAATG
56771422 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
56771441 TTATCATCCA
Statistics
Matches: 241, Mismatches: 12, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
39 13 0.05
40 199 0.83
41 25 0.10
42 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:56774672 original size:55 final size:55
Alignment explanation
Indices: 56774612--56774717 Score: 212
Period size: 55 Copynumber: 1.9 Consensus size: 55
56774602 TAATTAGTAC
56774612 TTAAACTTGAAAATGATTATGAGTTTTTTTAGGTAGCTGATTTATGTGATTTAAT
1 TTAAACTTGAAAATGATTATGAGTTTTTTTAGGTAGCTGATTTATGTGATTTAAT
56774667 TTAAACTTGAAAATGATTATGAGTTTTTTTAGGTAGCTGATTTATGTGATT
1 TTAAACTTGAAAATGATTATGAGTTTTTTTAGGTAGCTGATTTATGTGATT
56774718 AACTTTTGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (55 bp):
TTAAACTTGAAAATGATTATGAGTTTTTTTAGGTAGCTGATTTATGTGATTTAAT
Found at i:56775895 original size:89 final size:88
Alignment explanation
Indices: 56775735--56775913 Score: 304
Period size: 89 Copynumber: 2.0 Consensus size: 88
56775725 TTTTGTTTTG
*
56775735 GCAAAGCAAACACACAGGTTGCATTTTTTTCTTTATTTTGTTACTGTTCTTCTTCTACTATTGCA
1 GCAAAGAAAACACACAGGTTGCATTTTTTTCTTTATTTTGTTACTGTTCTTCTTCTACTATTGCA
*
56775800 AATTAATGGGGGATGGTGTAAAA
66 AATTAATGAGGGATGGTGTAAAA
* * *
56775823 GCAAAGAAAACACACGGGTTGCATTTTTTTCTTTATTTTTTTTACTGTTCTTCTTCTACTATTGT
1 GCAAAGAAAACACACAGGTTGCATTTTTTTCTTTA-TTTTGTTACTGTTCTTCTTCTACTATTGC
56775888 AAATTAATGAGGGATGGTGTAAAA
65 AAATTAATGAGGGATGGTGTAAAA
56775912 GC
1 GC
56775914 CGTCGTTTCC
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
88 33 0.39
89 52 0.61
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (88 bp):
GCAAAGAAAACACACAGGTTGCATTTTTTTCTTTATTTTGTTACTGTTCTTCTTCTACTATTGCA
AATTAATGAGGGATGGTGTAAAA
Found at i:56777170 original size:125 final size:126
Alignment explanation
Indices: 56777033--56777542 Score: 569
Period size: 126 Copynumber: 4.1 Consensus size: 126
56777023 AGAAGAATTT
* *
56777033 TTTTTCTACAGTAGTTCCTGAAAAATTAA-TTTGAGAAGACGGTTCT-AAAAAGATAATGTCAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAA-ATAATGTCAAA
* * *
56777096 AACACTTCAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTC
* * * * * * *
56777158 TTTTTCTACAGTAGTTCTTGAAAAAATAAATTTGAGAAGACGATTTTGTAAAAATAGTGT-ACAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAATGTCA-AA
* * * * *
56777222 AACGCTTTAAGCAAGATGCACTGTCAACAAAAGTACTGAAAAAAGCTCACACGTAGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTC
* *
56777284 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAAAGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAATGTCAAAA
* * * * * *
56777349 ACGCTTCAAGCAGGATTCACTGTCTA-CAAAATTGCTGAAAAAAG-TTCCACATGGACGTTC
66 ACGCTTCAAGCAGGATGCACTGTC-AGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTC
* * * * * * *
56777409 TTTTTCTACAGTAGTTTCTAAAAAAATAATTTTAAAAAGACAGCTCTAAAAAAATAATGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAATGTCAAAA
* * * *
56777474 ACGC-T---G-A-TA-G-GCTGTCAGCAAAATTACTGAAAAAAGTTCCCACGTAGACACTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTC
*
56777527 TTTTTCTATAGTAGTT
1 TTTTTCTACAGTAGTT
56777543 TTTGCTTAGC
Statistics
Matches: 328, Mismatches: 50, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
116 1 0.00
117 22 0.07
118 26 0.08
119 1 0.00
120 1 0.00
121 1 0.00
124 1 0.00
125 99 0.30
126 170 0.52
127 6 0.02
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAATGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTC
Found at i:56777477 original size:251 final size:243
Alignment explanation
Indices: 56777033--56777542 Score: 609
Period size: 251 Copynumber: 2.1 Consensus size: 243
56777023 AGAAGAATTT
* * *
56777033 TTTTTCTACAGTAGTTCCTGAAAAATTAATTTGAGAAGACGGTTCTAAAAAGATAATGTCAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTAAGAAGACGGTTCTAAAAAGATAAAGTCAAAAA
* *
56777098 CACTTCAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTT
66 CACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACATGGACGCTCTTTTT
* * * * * ** * *
56777163 CTACAGTAGTTCTTGAAAAAATAAATTTGAGAAGACGATTTTGTAAAAATAGTGTACAAAACGCT
131 CTACAGTAGTTCTTAAAAAAATAAATTTAAAAAGACGACTCTAAAAAAATAATGTAAAAAACGC-
*
56777228 TTAAGCA-AGATGCACTGTCAACAAAAGTACTGAAAAAAGCTCACACGTAGACGCTC
195 -T--G-ATAG--G--CTGTCAACAAAAGTACTGAAAAAAGCTCACACGTAGACACTC
*
56777284 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAA-ATAAAGTCAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAA-TTTAAGAAGACGGTTCT-AAAAAGATAAAGTCAAA
* * * * *
56777348 AACGCTTCAAGCAGGATTCACTGTCTA-CAAAATTGCTGAAAAAAG-TTCCACATGGACGTTCTT
64 AACACTTCAAGCAGGATGCACTGTC-AGCAAAATTACTGAAAAAAGCTCCCACATGGACGCTCTT
*
56777411 TTTCTACAGTAGTT-TCTAAAAAAATAATTTTAAAAAGAC-AGCTCTAAAAAAATAATGTAAAAA
128 TTTCTACAGTAGTTCT-TAAAAAAATAAATTTAAAAAGACGA-CTCTAAAAAAATAATGTAAAAA
* * * *
56777474 ACGCTGATAGGCTGTCAGCAAAATTACTGAAAAAAGTTCCCACGTAGACACTC
191 ACGCTGATAGGCTGTCAACAAAAGTACTGAAAAAAGCTCACACGTAGACACTC
*
56777527 TTTTTCTATAGTAGTT
1 TTTTTCTACAGTAGTT
56777543 TTTGCTTAGC
Statistics
Matches: 226, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
243 52 0.23
245 1 0.00
246 1 0.00
247 3 0.01
249 1 0.00
250 2 0.01
251 95 0.42
252 65 0.29
253 6 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (243 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTAAGAAGACGGTTCTAAAAAGATAAAGTCAAAAA
CACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACATGGACGCTCTTTTT
CTACAGTAGTTCTTAAAAAAATAAATTTAAAAAGACGACTCTAAAAAAATAATGTAAAAAACGCT
GATAGGCTGTCAACAAAAGTACTGAAAAAAGCTCACACGTAGACACTC
Found at i:56787808 original size:40 final size:40
Alignment explanation
Indices: 56787764--56787964 Score: 339
Period size: 40 Copynumber: 5.0 Consensus size: 40
56787754 AGAATTGAGA
56787764 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
56787804 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
56787844 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
56787884 GTTATATCCGGGCTAAGTGCCGAAGAGCATTCATGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * * * *
56787924 GTTACATCCGGGCTAAGTCCTGAAGGGAATTCGTGCCGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
56787964 G
1 G
56787965 ATGTGTAATC
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:56788082 original size:43 final size:42
Alignment explanation
Indices: 56787953--56788094 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 42
56787943 CTGAAGGGAA
* * *
56787953 TTCGTGCCGGTGATGTGTAATCAGGCCTTCATGCCTAGCAGGC
1 TTCGTGCCGGTGATGTGTATTC-GGGCTTCGTGCCTAGCAGGC
* * * *
56787996 TTTGTGCTGGTGATGTGTATTCGGGCTTCGTTCCTAACAGGC
1 TTCGTGCCGGTGATGTGTATTCGGGCTTCGTGCCTAGCAGGC
*
56788038 TTCGTGCCGGTGATGTGTATTTGGGTCTTCGTGCCTAGCAGGC
1 TTCGTGCCGGTGATGTGTATTCGGG-CTTCGTGCCTAGCAGGC
**
56788081 TTAATGCCGGTGAT
1 TTCGTGCCGGTGAT
56788095 TCGAGCAAAG
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 38 0.45
43 46 0.55
ACGTcount: A:0.13, C:0.21, G:0.32, T:0.34
Consensus pattern (42 bp):
TTCGTGCCGGTGATGTGTATTCGGGCTTCGTGCCTAGCAGGC
Found at i:56792195 original size:47 final size:47
Alignment explanation
Indices: 56791798--56792219 Score: 657
Period size: 47 Copynumber: 9.0 Consensus size: 47
56791788 GATTCTATGA
*
56791798 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
56791845 GATGAATGTGAACATGCAAATATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
56791892 GATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
56791939 GATGAATGTGATCATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
56791986 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
56792033 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
56792080 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
56792127 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** * *
56792174 GATGAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
56792220 CGAAATGTGT
Statistics
Matches: 346, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 343 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:56793287 original size:24 final size:24
Alignment explanation
Indices: 56793237--56793290 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
56793227 AACCGAATTT
*
56793237 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
56793261 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
56793285 GCACAC
1 GCACAC
56793291 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:56793809 original size:18 final size:18
Alignment explanation
Indices: 56793786--56793820 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
56793776 TAATATCACC
56793786 TTACTATCAATAGTCCAA
1 TTACTATCAATAGTCCAA
56793804 TTACTATCAATAGTCCA
1 TTACTATCAATAGTCCA
56793821 TTCGATCCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (18 bp):
TTACTATCAATAGTCCAA
Found at i:56802073 original size:17 final size:19
Alignment explanation
Indices: 56802043--56802081 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
56802033 GTGCGGACTA
56802043 CCCGTGTGGGCCCACA-CG
1 CCCGTGTGGGCCCACACCG
56802061 CCCGTGT-GGCCCACACCG
1 CCCGTGTGGGCCCACACCG
56802079 CCC
1 CCC
56802082 AATTAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.10, C:0.51, G:0.28, T:0.10
Consensus pattern (19 bp):
CCCGTGTGGGCCCACACCG
Found at i:56806656 original size:18 final size:18
Alignment explanation
Indices: 56806633--56806668 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
56806623 AAAAAGAAAA
*
56806633 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
56806651 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
56806669 GCACTTAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:56807905 original size:21 final size:21
Alignment explanation
Indices: 56807881--56807923 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
56807871 TATGAATATT
*
56807881 ATATTGTAACACCTGATCTAC
1 ATATTGTAACACCCGATCTAC
*
56807902 ATATTGTAACACCCGATTTAC
1 ATATTGTAACACCCGATCTAC
56807923 A
1 A
56807924 AACTATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (21 bp):
ATATTGTAACACCCGATCTAC
Found at i:56810053 original size:29 final size:29
Alignment explanation
Indices: 56809961--56810051 Score: 105
Period size: 28 Copynumber: 3.1 Consensus size: 29
56809951 TATAACAATT
* * *
56809961 TTTTACTAT-TTTTAAAATTTTTAAATAAAA
1 TTTTACAATATTTTACAATTTCT-AAT-AAA
*
56809991 TTTTACAATCTTTTACAATTTCTAATAAA
1 TTTTACAATATTTTACAATTTCTAATAAA
*
56810020 TTTTACAATATTTT-CAATTTCTAATATA
1 TTTTACAATATTTTACAATTTCTAATAAA
56810048 TTTT
1 TTTT
56810052 TAAATTTGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 17 0.31
29 16 0.29
30 11 0.20
31 11 0.20
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (29 bp):
TTTTACAATATTTTACAATTTCTAATAAA
Found at i:56815473 original size:42 final size:41
Alignment explanation
Indices: 56815411--56815527 Score: 112
Period size: 42 Copynumber: 2.8 Consensus size: 41
56815401 GATATGCAAT
*
56815411 TTCGTGTAAGACCAGTTCTGGGACGTTGGCGTCGTATATGAG-
1 TTCGTGTAAGACCCG-TCTGGGACGTTGGCGTCG-ATATGAGA
* * *
56815453 TTCGTGTAAGACCCTGTCTGGGACAG-TGGCATTGATATGTGA
1 TTCGTGTAAGACCC-GTCTGGGAC-GTTGGCGTCGATATGAGA
* *
56815495 TTACATGTAAGACCACGTCTGGGACATTGGCGT
1 TT-CGTGTAAGACC-CGTCTGGGACGTTGGCGT
56815528 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
41 6 0.10
42 29 0.47
43 26 0.42
44 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (41 bp):
TTCGTGTAAGACCCGTCTGGGACGTTGGCGTCGATATGAGA
Found at i:56823879 original size:27 final size:28
Alignment explanation
Indices: 56823795--56823892 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
56823785 CATGAGATTG
* * * *
56823795 GCACTAAGTGTGCGGGTTTAAATTTTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
56823824 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
56823852 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
56823879 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
56823893 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:56823903 original size:27 final size:27
Alignment explanation
Indices: 56823823--56823904 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
56823813 TAAATTTTAC
* *
56823823 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
56823851 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
56823878 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
56823905 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:56833361 original size:42 final size:43
Alignment explanation
Indices: 56833311--56833432 Score: 133
Period size: 42 Copynumber: 2.8 Consensus size: 43
56833301 AGATTGTGAT
56833311 TTACGTGTAAGACCATGTCTGGGACATCGGCATTGTATATGAG-
1 TTACGTGTAAGACCATGTCTGGGACAT-GGCATTGTATATGAGA
* * * *
56833354 TT-CGTGTAAGACCCTATCTGGGACAGTGGCATCG-ATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACA-TGGCATTGTATATGAGA
* * *
56833396 TTACATGTAAGACCACGTCTGGGACGTTGGCATTGTA
1 TTACGTGTAAGACCATGTCTGGGAC-ATGGCATTGTA
56833433 CGAGCTTTTC
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
41 6 0.09
42 29 0.45
43 28 0.44
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATGGCATTGTATATGAGA
Found at i:56833417 original size:43 final size:44
Alignment explanation
Indices: 56833294--56833428 Score: 131
Period size: 43 Copynumber: 3.1 Consensus size: 44
56833284 TTTGGAACGT
* *
56833294 TGGCATCAGAT-TGTGATTTACGTGTAAGACCATGTCTGGGACA-
1 TGGCATC-GATATGTGAGTTACGTGTAAGACCACGTCTGGGACAG
* * *
56833337 TCGGCATTG-TATATGAGTT-CGTGTAAGACC-CTATCTGGGACAG
1 T-GGCATCGATATGTGAGTTACGTGTAAGACCAC-GTCTGGGACAG
*
56833380 TGGCATCGATATGTGA-TTACATGTAAGACCACGTCTGGGAC-G
1 TGGCATCGATATGTGAGTTACGTGTAAGACCACGTCTGGGACAG
56833422 TTGGCAT
1 -TGGCAT
56833429 TGTACGAGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
42 30 0.40
43 39 0.52
44 6 0.08
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (44 bp):
TGGCATCGATATGTGAGTTACGTGTAAGACCACGTCTGGGACAG
Found at i:56840437 original size:7 final size:7
Alignment explanation
Indices: 56840425--56840455 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
56840415 ATGGGCACAT
56840425 ATGTATA
1 ATGTATA
56840432 ATGTATA
1 ATGTATA
*
56840439 ATGTACA
1 ATGTATA
56840446 ATGTATA
1 ATGTATA
56840453 ATG
1 ATG
56840456 CTGTTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.39
Consensus pattern (7 bp):
ATGTATA
Found at i:56841267 original size:23 final size:21
Alignment explanation
Indices: 56841241--56841299 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
56841231 GACATAATTT
56841241 TTAAAATATAAAAAAAATTATTA
1 TTAAAATATAAAAAAAA-TA-TA
**
56841264 TTAAAAT-TTTAAAAAATATA
1 TTAAAATATAAAAAAAATATA
*
56841284 TAAAAATAATAAAAAA
1 TTAAAAT-ATAAAAAA
56841300 TAAAAAATGG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
20 8 0.28
21 2 0.07
22 12 0.41
23 7 0.24
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
TTAAAATATAAAAAAAATATA
Found at i:56841289 original size:20 final size:21
Alignment explanation
Indices: 56841242--56841301 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
56841232 ACATAATTTT
56841242 TAAAATATAA-AAAAAATTATTA
1 TAAAA-ATAATAAAAAA-TATTA
* **
56841264 TTAAAATTTTAAAAAATA-TA
1 TAAAAATAATAAAAAATATTA
56841284 TAAAAATAATAAAAAATA
1 TAAAAATAATAAAAAATA
56841302 AAAAATGGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
20 17 0.55
21 4 0.13
22 10 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
TAAAAATAATAAAAAATATTA
Found at i:56858966 original size:40 final size:41
Alignment explanation
Indices: 56858907--56859158 Score: 304
Period size: 40 Copynumber: 6.3 Consensus size: 41
56858897 CATTTGAATG
* *
56858907 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
56858947 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
56858987 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
*
56859027 TTATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGATT
* *
56859067 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * * * *
56859107 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
56859147 ATATCC-GGCTAA
1 ATATCCGGGCTAA
56859159 ATTCCGATGA
Statistics
Matches: 182, Mismatches: 23, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
39 10 0.05
40 167 0.92
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:56859121 original size:120 final size:120
Alignment explanation
Indices: 56858907--56859158 Score: 402
Period size: 120 Copynumber: 2.1 Consensus size: 120
56858897 CATTTGAATG
* *
56858907 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
56858972 TTTGTGCTAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
56859027 TTATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-TATATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AG-TGATTATATCCGGGCTAAGACCCGAAGG
* *
56859090 CATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
64 CATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
56859147 ATATCC-GGCTAA
1 ATATCCGGGCTAA
56859159 ATTCCGATGA
Statistics
Matches: 122, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
119 7 0.06
120 112 0.92
121 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:56866601 original size:31 final size:35
Alignment explanation
Indices: 56866565--56866639 Score: 86
Period size: 37 Copynumber: 2.2 Consensus size: 35
56866555 GTGTGCATGA
*
56866565 GCATTTG-AATGA-TATCCGGGCT-A-TCCCGAAG
1 GCATTTGCAATGATTATCCGGGCTAAGACCCGAAG
*
56866596 GCATTTGCTAGTGATTTATCCGGGCTAAGACCCGAAG
1 GCATTTGC-AATGA-TTATCCGGGCTAAGACCCGAAG
56866633 GCATTTG
1 GCATTTG
56866640 TGCTGAGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
31 7 0.19
33 4 0.11
35 10 0.28
36 1 0.03
37 14 0.39
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (35 bp):
GCATTTGCAATGATTATCCGGGCTAAGACCCGAAG
Found at i:56866752 original size:42 final size:41
Alignment explanation
Indices: 56866615--56866768 Score: 163
Period size: 41 Copynumber: 3.7 Consensus size: 41
56866605 AGTGATTTAT
*
56866615 CCGGGCTAAGACCCGAAGGCATTTGTGCTGAGTTGTCTATA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTGAGTTGACTATA
* * * *
56866656 CCGGGTTAAGACCCGAAGGCA-ATGTGCTGAG-TGATTTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTGAGTTGACTATA
*
56866695 TCCGGGCTAAGAGACCAGAAGGCTATTTGTGC-GAGTTG-CTATA
1 -CCGGGCT-A-AGACCCGAAGGC-ATTTGTGCTGAGTTGACTATA
*
56866738 CCCGGGTCTAAGACCCGAAGGCAATTGTGCT
1 -CCGGG-CTAAGACCCGAAGGCATTTGTGCT
56866769 TGTGGTTATC
Statistics
Matches: 92, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
39 5 0.05
40 15 0.16
41 28 0.30
42 22 0.24
43 13 0.14
44 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTGAGTTGACTATA
Found at i:56866760 original size:84 final size:79
Alignment explanation
Indices: 56866589--56866768 Score: 249
Period size: 84 Copynumber: 2.2 Consensus size: 79
56866579 TCCGGGCTAT
* *
56866589 CCCGAAGGC-ATTTGCTAGTGATTTATCCGGGCTAAGACCCGAAGGCATTTGTGCTGAGTTGTCT
1 CCCGAAGGCAATGTGCTAGTGATTTATCCGGGCTAAGACCAGAAGGCATTTGTGCTGAGTTGTCT
56866653 ATACCGGGTTAAGA
66 ATACCGGGTTAAGA
56866667 CCCGAAGGCAATGTGCTGAGTGATTTTATCCGGGCTAAGAGACCAGAAGGCTATTTGTGC-GAGT
1 CCCGAAGGCAATGTGCT-AGTGA-TTTATCCGGGCT-A-AGACCAGAAGGC-ATTTGTGCTGAGT
56866731 TG-CTATACCCGGGTCTAAGA
61 TGTCTATA-CCGGGT-TAAGA
56866751 CCCGAAGGCAATTGTGCT
1 CCCGAAGGCAA-TGTGCT
56866769 TGTGGTTATC
Statistics
Matches: 91, Mismatches: 2, Indels: 11
0.88 0.02 0.11
Matches are distributed among these distances:
78 9 0.10
79 6 0.07
80 5 0.05
81 12 0.13
82 6 0.07
83 23 0.25
84 24 0.26
85 6 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CCCGAAGGCAATGTGCTAGTGATTTATCCGGGCTAAGACCAGAAGGCATTTGTGCTGAGTTGTCT
ATACCGGGTTAAGA
Found at i:56871655 original size:40 final size:40
Alignment explanation
Indices: 56871618--56871841 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
56871608 GCTACTCGTT
* *
56871618 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
56871658 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
56871698 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
**
56871738 CAAATGCCTTC-GGATCTTAGTCCGGA-TTAGT-ACTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
56871776 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
56871817 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
56871842 CATCATTCAA
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 32 0.19
39 11 0.07
40 112 0.67
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:56871801 original size:118 final size:120
Alignment explanation
Indices: 56871618--56871841 Score: 296
Period size: 118 Copynumber: 1.9 Consensus size: 120
56871608 GCTACTCGTT
*
56871618 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
56871683 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * **
56871738 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
56871799 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
56871842 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 3 0.03
118 53 0.58
119 15 0.16
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:56879737 original size:39 final size:39
Alignment explanation
Indices: 56879575--56879798 Score: 274
Period size: 40 Copynumber: 5.7 Consensus size: 39
56879565 GCTACTCGTT
* *
56879575 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
56879615 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
56879655 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
* * *
56879695 CAAATGCCTTC-GGATCTTAGTCTGGATTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAACTCGCA
* * * *
56879734 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAACTCGCA
56879774 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
56879799 CATCATTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 57 0.34
40 109 0.65
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:56882264 original size:21 final size:22
Alignment explanation
Indices: 56882224--56882264 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
56882214 TTCCAAATAA
* *
56882224 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
56882246 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
56882265 CAGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:56883497 original size:15 final size:16
Alignment explanation
Indices: 56883470--56883499 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
56883460 AGATATTCCA
56883470 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
56883486 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
56883500 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:56884758 original size:44 final size:44
Alignment explanation
Indices: 56884671--56884761 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 44
56884661 GCAGGCAAAA
* * * * *
56884671 TAATATTAAAATTACCTACACTAATCAGAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACAATAATCAAAGTTGAAGCGAGAAAC
* * *
56884715 TAATATTAAAATAACCTACAATTATTAAAGTTGAAGCGGGAAAC
1 TAATATTAAAATAACCTACAATAATCAAAGTTGAAGCGAGAAAC
56884759 TAA
1 TAA
56884762 AAAAAAAAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (44 bp):
TAATATTAAAATAACCTACAATAATCAAAGTTGAAGCGAGAAAC
Found at i:56885462 original size:30 final size:30
Alignment explanation
Indices: 56885428--56885523 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 30
56885418 GACATTGATT
56885428 TTTTTAAAATACAACTCTACCACTATTTAC
1 TTTTTAAAATACAACTCTACCACTATTTAC
* *** *
56885458 TTTTTATAACTTTTA-AAAAATA--ACT-TTTAT
1 TTTTTA-AA---ATACAACTCTACCACTATTTAC
56885488 TTTTTAAAATACAACTCTACCACTATTTAC
1 TTTTTAAAATACAACTCTACCACTATTTAC
*
56885518 TCTTTA
1 TTTTTA
56885524 TGGCTTCAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 16
0.64 0.15 0.22
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
29 5 0.11
30 25 0.53
31 5 0.11
33 4 0.09
34 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (30 bp):
TTTTTAAAATACAACTCTACCACTATTTAC
Found at i:56885549 original size:60 final size:60
Alignment explanation
Indices: 56885427--56885554 Score: 170
Period size: 60 Copynumber: 2.1 Consensus size: 60
56885417 TGACATTGAT
* * * *
56885427 TTTTTTAAAATACAACTCTACCACTATTTACTTTTTATAACTTTTAAAAAATAACTTTTA
1 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTTCAAAAAATAAATTATA
**
56885487 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATGGC-TTCAAAAAGA-AAATATATA
1 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTTCAAAAA-ATAAAT-TATA
56885547 TTTTTTAA
1 TTTTTTAA
56885555 TTTCTTGCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
59 10 0.17
60 50 0.83
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (60 bp):
TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTTCAAAAAATAAATTATA
Found at i:56887851 original size:56 final size:56
Alignment explanation
Indices: 56887746--56887851 Score: 158
Period size: 56 Copynumber: 1.9 Consensus size: 56
56887736 TTGACATTGA
* **
56887746 TTTTTTAAAATACAACTCTACCACTATTTACTTTTTATAACTTTTAAAAATTAACT
1 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTCAAAAAATTAACT
* **
56887802 TTTTTTTAAATACAACTCTACCACTATTTACTCTTTATGGCTTCAAAAAA
1 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTCAAAAAA
56887852 AATATTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 44 1.00
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (56 bp):
TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTCAAAAAATTAACT
Found at i:56887861 original size:56 final size:56
Alignment explanation
Indices: 56887746--56887864 Score: 152
Period size: 56 Copynumber: 2.1 Consensus size: 56
56887736 TTGACATTGA
* ** *
56887746 TTTTTTAAAATACAACTCTACCACTATTTACTTTTTATAACTTTTAAAAATTAACT
1 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTAAAAAAAATAACT
* **
56887802 TTTTTTTAAATACAACTCTACCACTATTTACTCTTTATGGCTTCAAAAAAAAT-A-T
1 TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTT-AAAAAAAATAACT
56887857 TTTTTTAA
1 TTTTTTAA
56887865 TTTCTTAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 8 0.15
56 40 0.74
57 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.46
Consensus pattern (56 bp):
TTTTTTAAAATACAACTCTACCACTATTTACTCTTTATAACTTAAAAAAAATAACT
Found at i:56892598 original size:70 final size:70
Alignment explanation
Indices: 56892518--56892657 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
56892508 AGATGTATCA
*
56892518 TTTTTAAAACTTGAATATCGATACCTTTGTTCCAGACCTTAAAAACACAACATATATCAACACAT
1 TTTTTAAAACTTGAATATCGATACCTCTGTTCCAGACCTTAAAAACACAACATATATCAACACAT
56892583 AGATC
66 AGATC
56892588 TTTTTAAAACTTGAATATCGATACCTCTGTTCCAGACCTTAAAAACACAACATATATCAACACAT
1 TTTTTAAAACTTGAATATCGATACCTCTGTTCCAGACCTTAAAAACACAACATATATCAACACAT
56892653 AGATC
66 AGATC
56892658 ATTCCAAACT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (70 bp):
TTTTTAAAACTTGAATATCGATACCTCTGTTCCAGACCTTAAAAACACAACATATATCAACACAT
AGATC
Found at i:56900841 original size:43 final size:41
Alignment explanation
Indices: 56900729--56900846 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 41
56900719 GACTTATGAT
* * *
56900729 TTACATGTAAGACCACGTCTGGGACATTGACATTGTATTTGA
1 TTACATGTAAGACCACGTCT-GGACATTGGCATCGCATTTGA
*** * *
56900771 TTTTGTGTACGACC-CTGTCTAGGACATTGGTATCGACATTTGA
1 TTACATGTAAGACCAC-GTCT-GGACATTGGCATCG-CATTTGA
56900814 TTACATGTAAGACCACGTCTGGCACATTGGCAT
1 TTACATGTAAGACCACGTCTGG-ACATTGGCAT
56900847 TATATGAGCT
Statistics
Matches: 58, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.02
42 27 0.47
43 29 0.50
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (41 bp):
TTACATGTAAGACCACGTCTGGACATTGGCATCGCATTTGA
Found at i:56931557 original size:27 final size:27
Alignment explanation
Indices: 56931520--56931573 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
56931510 TTACACTGAC
*
56931520 ACATCTTGTAGTCGATGCATGTCCTAG
1 ACATCTTGTAGCCGATGCATGTCCTAG
56931547 ACATCTTGTAGCCGATGCATGTCCTAG
1 ACATCTTGTAGCCGATGCATGTCCTAG
56931574 GCATGTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (27 bp):
ACATCTTGTAGCCGATGCATGTCCTAG
Found at i:56931625 original size:46 final size:46
Alignment explanation
Indices: 56931557--56931727 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
56931547 ACATCTTGTA
* ** * *
56931557 GCCGATGCATGTCCTAGGCATGTCTTTCATTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCATACATGTCTTACACTGGCTTACATCTCGAG
* * * *
56931603 GCCGATGCATGTCTCATACATGTCTTACACTAGCTCT-CATCTCAAT
1 GCCGATGCATGTCCCATACATGTCTTACACTGGCT-TACATCTCGAG
* * * *
56931649 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GTG
1 GCCGATG-CATGTCCCATACAT-GTCTTACACTGGCTTACAT-CTCGAG
* *
56931697 GCCGATACATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTCCCATACATGTCTTACACT
56931728 AGCACACAAA
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
46 52 0.51
47 26 0.26
48 22 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCATACATGTCTTACACTGGCTTACATCTCGAG
Found at i:56932117 original size:29 final size:30
Alignment explanation
Indices: 56932071--56932137 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
56932061 GGCCCAAGAA
* * *
56932071 TAAATACTAAAAATTTGAGGGATTAA-AGTG
1 TAAATA-TAAAAAGTTGAAGGACTAATAGTG
*
56932101 TAAATATGAAAAGTTGAAGGACTAATAGTG
1 TAAATATAAAAAGTTGAAGGACTAATAGTG
*
56932131 CAAATAT
1 TAAATAT
56932138 TTTAGGGGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.48, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
TAAATATAAAAAGTTGAAGGACTAATAGTG
Found at i:56941150 original size:23 final size:23
Alignment explanation
Indices: 56941120--56941166 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
56941110 CTTGATTAAG
56941120 TAAAATCATACCTAAGTTATTCT
1 TAAAATCATACCTAAGTTATTCT
*
56941143 TAAAATCATGCCTAAGTTATTCT
1 TAAAATCATACCTAAGTTATTCT
56941166 T
1 T
56941167 GCATTACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.40
Consensus pattern (23 bp):
TAAAATCATACCTAAGTTATTCT
Found at i:56943633 original size:47 final size:44
Alignment explanation
Indices: 56943561--56943728 Score: 135
Period size: 46 Copynumber: 3.7 Consensus size: 44
56943551 GGTATAATGC
* * *
56943561 CGATGCCGTGTCCCAGACACAGTCTTACACTGGCTCATCCATT-AAG
1 CGATGCCATGTCCTAGACA-TGTCTTACACTGGCTCAT-C-TTGAAG
* * *
56943607 TCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTTGTAG
1 -CGATGCCATGTCCTAGACAT-GTCTTACACTGGCTCATCTTGAAG
* *
56943653 CAGATG-CATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGG
1 C-GATGCCATGTCCTAGACATGTCTTACACTGGC-T-CATCTTGAAG
** *
56943699 CTGATG-CATGTCCCGGACATGTTTTACACT
1 C-GATGCCATGTCCTAGACATGTCTTACACT
56943729 AGTTCTTGTC
Statistics
Matches: 101, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
44 12 0.12
45 17 0.17
46 40 0.40
47 32 0.32
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
CGATGCCATGTCCTAGACATGTCTTACACTGGCTCATCTTGAAG
Found at i:56943709 original size:46 final size:45
Alignment explanation
Indices: 56943569--56943869 Score: 172
Period size: 47 Copynumber: 6.5 Consensus size: 45
56943559 GCCGATGCCG
** * *
56943569 TGTCCCAGACACAGTCTTACACTGGC-TCATCCATTAAG-TCGATGCCA
1 TGTCCCAGACATGGTCTTACACTGGCTTCAT-C-TGAGGCT-GATG-CA
* * * *
56943616 TGTCCTAGACATGGTCTTACACTGAC-ACATCTTGTA-GCAGATGCA
1 TGTCCCAGACATGGTCTTACACTGGCTTCATC-TG-AGGCTGATGCA
*
56943661 TGTCCTAGACAT-GTCTTACACTGGCTTACATCTCGAGGCTGATGCA
1 TGTCCCAGACATGGTCTTACACTGGCTT-CATCT-GAGGCTGATGCA
* * * * * * * *
56943707 TGTCCCGGACAT-GTTTTACACTAG-TTCTTGTCTCAATGCTAATACCA
1 TGTCCCAGACATGGTCTTACACTGGCTTC--ATCT-GAGGCTGAT-GCA
* *
56943754 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCT-ATGCA
1 TGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTGAGG-CTGATGCA
* * *
56943801 TGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCCT-ATGCA
1 TGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTGAGG-CTGATGCA
56943848 TGTCCCAGACAT-GTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
56943870 AGCACACAAA
Statistics
Matches: 209, Mismatches: 31, Indels: 29
0.78 0.12 0.11
Matches are distributed among these distances:
44 13 0.06
45 18 0.09
46 59 0.28
47 99 0.47
48 14 0.07
49 4 0.02
50 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (45 bp):
TGTCCCAGACATGGTCTTACACTGGCTTCATCTGAGGCTGATGCA
Found at i:56943803 original size:47 final size:47
Alignment explanation
Indices: 56943752--56943869 Score: 220
Period size: 47 Copynumber: 2.5 Consensus size: 47
56943742 ATGCTAATAC
56943752 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTATG
*
56943799 CATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCCTATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTATG
56943846 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
56943870 AGCACACAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 9 0.13
47 60 0.87
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTATG
Found at i:56950778 original size:8 final size:8
Alignment explanation
Indices: 56950735--56950770 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
56950725 GACAAAAGCT
56950735 GAAATGCC
1 GAAATGCC
56950743 GAAATGCC
1 GAAATGCC
56950751 GAAATGCC
1 GAAATGCC
56950759 GAAATGCC
1 GAAATGCC
56950767 GAAA
1 GAAA
56950771 AGCTGAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.42, C:0.22, G:0.25, T:0.11
Consensus pattern (8 bp):
GAAATGCC
Found at i:56950778 original size:16 final size:16
Alignment explanation
Indices: 56950735--56950778 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
56950725 GACAAAAGCT
*
56950735 GAAATGCCGAAATGCC
1 GAAAAGCCGAAATGCC
*
56950751 GAAATGCCGAAATGCC
1 GAAAAGCCGAAATGCC
*
56950767 GAAAAGCTGAAA
1 GAAAAGCCGAAA
56950779 GTTTGTCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.11
Consensus pattern (16 bp):
GAAAAGCCGAAATGCC
Found at i:56951048 original size:29 final size:28
Alignment explanation
Indices: 56950989--56951103 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
56950979 GTAAGCATGA
* * * * *
56950989 ATATGAATGTGACTGGACCTAACGGACC
1 ATATAAATGTGATTGGGCCTAATGGGCC
56951017 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
56951046 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
56951075 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
56951103 A
1 A
56951104 GATATAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 27 0.36
29 47 0.64
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:56958007 original size:29 final size:28
Alignment explanation
Indices: 56957888--56958009 Score: 167
Period size: 27 Copynumber: 4.4 Consensus size: 28
56957878 ATATTAAGTC
*
56957888 CGCACACTCAGTGCTATATAATT-AACT
1 CGCACACTTAGTGCTATATAATTAAACT
*
56957915 CGCACACTTAGTGCTATATAA-TCAACT
1 CGCACACTTAGTGCTATATAATTAAACT
*
56957942 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATTAAACT
* * *
56957970 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TTAAACT
56957999 CGCACACTTAG
1 CGCACACTTAG
56958010 CGTCAATCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.01
27 45 0.53
28 23 0.27
29 16 0.19
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATTAAACT
Found at i:56966218 original size:27 final size:27
Alignment explanation
Indices: 56966201--56966297 Score: 176
Period size: 27 Copynumber: 3.6 Consensus size: 27
56966191 ATATTAAGTC
*
56966201 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
56966228 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
56966255 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
56966283 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56966298 GTACAATTTA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 49 0.72
28 19 0.28
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:56982179 original size:45 final size:45
Alignment explanation
Indices: 56982115--56982239 Score: 151
Period size: 45 Copynumber: 2.8 Consensus size: 45
56982105 CTAGGAATTA
* *
56982115 AGAAATCTGAGCTCATTGAGTTGGTCTGAGTTCATGATATATGTG
1 AGAAATCTGAGCTCGTTGAGTTGGTCTGAGTTCATGATATATATG
* * * * *
56982160 AGAAATCTGAACTCGTTGAGTTGGTTTGGGTTCGTGATATGTATG
1 AGAAATCTGAGCTCGTTGAGTTGGTCTGAGTTCATGATATATATG
** * *
56982205 AGGCATCCGAGCTCGTTGAGTTGGTCCGAGTTCAT
1 AGAAATCTGAGCTCGTTGAGTTGGTCTGAGTTCAT
56982240 TATGGATGCG
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (45 bp):
AGAAATCTGAGCTCGTTGAGTTGGTCTGAGTTCATGATATATATG
Found at i:56986197 original size:26 final size:26
Alignment explanation
Indices: 56986161--56986211 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
56986151 AAGACTATTG
56986161 TAGGTAGTAGACTGTACTGAAATACC
1 TAGGTAGTAGACTGTACTGAAATACC
56986187 TAGGTAGTAGACTGTACTGAAATAC
1 TAGGTAGTAGACTGTACTGAAATAC
56986212 TCTATTTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGGTAGTAGACTGTACTGAAATACC
Found at i:56988557 original size:40 final size:40
Alignment explanation
Indices: 56988488--56988693 Score: 297
Period size: 40 Copynumber: 5.2 Consensus size: 40
56988478 AACCCAAGTA
* **
56988488 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
56988527 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
56988567 CCTTTGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
56988607 CCTTCGGGACTTAACCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
56988647 CCTTTGAGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
56988687 CCTTCGG
1 CCTTCGG
56988694 ATCTTAGTCC
Statistics
Matches: 150, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 13 0.09
40 137 0.91
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:56991740 original size:47 final size:47
Alignment explanation
Indices: 56991668--56991935 Score: 152
Period size: 47 Copynumber: 5.7 Consensus size: 47
56991658 TTAGGATTCT
* * *
56991668 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCG
*
56991715 ATGTGATGAATGTGAAAGTGTATATA----AT--GGCCG-AT-G-TG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
* * *
56991753 ATGAATG-TGAAAGT----GTATATATATGTGATAAGGCCTAATGGCCG
1 ATG--TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
* *
56991797 ATGTGATGAATGTGAAAGTGTATATATGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTG-----A--T-A-A-GGCCGAATGGCCG
* * * * * *
56991854 ACGTGATGGATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
* * *
56991901 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
56991936 TCCCGAAGGG
Statistics
Matches: 174, Mismatches: 20, Indels: 54
0.70 0.08 0.22
Matches are distributed among these distances:
35 8 0.05
38 4 0.02
39 9 0.05
40 4 0.02
41 8 0.05
42 4 0.02
43 9 0.05
44 4 0.02
46 1 0.01
47 79 0.45
49 1 0.01
52 2 0.01
54 1 0.01
55 1 0.01
56 1 0.01
57 38 0.22
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
Found at i:56991744 original size:33 final size:33
Alignment explanation
Indices: 56991706--56991773 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
56991696 TGATAAGGCC
56991706 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
56991739 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
56991772 TA
1 TA
56991774 TATGTGATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (33 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:56991778 original size:27 final size:29
Alignment explanation
Indices: 56991714--56991781 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 29
56991704 CCTAATGGCC
56991714 GATGTGATGAATGTGAAAGTGTATATAAT
1 GATGTGATGAATGTGAAAGTGTATATAAT
56991743 GGCCGATGTGATGAATGTGAAAGTGTATAT-AT
1 ----GATGTGATGAATGTGAAAGTGTATATAAT
56991775 -ATGTGAT
1 GATGTGAT
56991782 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
27 7 0.20
32 2 0.06
33 26 0.74
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (29 bp):
GATGTGATGAATGTGAAAGTGTATATAAT
Found at i:56991798 original size:49 final size:49
Alignment explanation
Indices: 56991740--56991935 Score: 184
Period size: 47 Copynumber: 3.9 Consensus size: 49
56991730 AAGTGTATAT
* * *
56991740 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
* * *
56991789 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTATATATGTGATAGGGCCG
1 AATGGCCAACGTGATGAATGTGAAAGTG----TA----TATATATGTGATAAGGCCG
* * * *
56991846 AGTGGCCAACGTGATGGATGTGAAAGTG--TATATATGTGACAGGGCCG
1 AATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
* *
56991893 AGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAAG
56991936 TCCCGAAGGG
Statistics
Matches: 128, Mismatches: 9, Indels: 22
0.81 0.06 0.14
Matches are distributed among these distances:
47 54 0.42
48 1 0.01
49 30 0.23
53 2 0.02
57 41 0.32
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (49 bp):
AATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
Found at i:56991836 original size:57 final size:57
Alignment explanation
Indices: 56991770--56991883 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 57
56991760 TGAAAGTGTA
* * *
56991770 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
* * *
56991827 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTG
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
56991884 ACAGGGCCGA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.32
Consensus pattern (57 bp):
TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
Found at i:56992110 original size:37 final size:37
Alignment explanation
Indices: 56992054--56992132 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
56992044 CCGAGCTCTA
* *
56992054 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
56992091 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
56992128 AAGAC
1 AAGAC
56992133 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:56994056 original size:29 final size:29
Alignment explanation
Indices: 56994021--56994094 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
56994011 GTTGTGAGAT
* *
56994021 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
56994050 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
56994079 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
56994095 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:56994486 original size:40 final size:39
Alignment explanation
Indices: 56994442--56994606 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 39
56994432 CTAAGTGACC
* *
56994442 ATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGAT
1 ATATCCGGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGAT
*
56994482 ATAT-CGGGCTAAG-TCC-CGAGCATTC--GCTAGTGAT
1 ATATCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGAT
*
56994516 AT-TCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGAT
* *
56994554 GTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAAT
1 ATATCCGGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGAT
*
56994594 ATATCCGTGCTAA
1 ATATCCGGGCTAA
56994607 ACCGAAGAGT
Statistics
Matches: 109, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
33 1 0.01
34 20 0.18
35 2 0.02
36 16 0.15
38 13 0.12
39 23 0.21
40 34 0.31
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGAT
Found at i:56994514 original size:34 final size:36
Alignment explanation
Indices: 56994409--56994606 Score: 159
Period size: 40 Copynumber: 5.2 Consensus size: 36
56994399 ATGATGTCCA
* * *
56994409 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCG-A-GCATTCTGCT-AGTGA-TATATCCG
* *
56994449 GACTAAGTTCCGAAGAGCATTCATGCTAGTGATATAT-CG
1 GGCTAAG-TCC--CGAGCATTC-TGCTAGTGATATATCCG
56994488 GGCTAAGTCCCGAGCATTC-GCTAGTGATAT-TCCG
1 GGCTAAGTCCCGAGCATTCTGCTAGTGATATATCCG
*
56994522 GGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTCCC--GAGCATTC-TGCTAGTGATATATCCG
* *
56994561 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCG
1 GGCTAAG-TCC--CGAGCATTC-TGCTAGTGATATATCCG
*
56994601 TGCTAA
1 GGCTAA
56994607 ACCGAAGAGT
Statistics
Matches: 133, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
33 1 0.01
34 24 0.18
36 16 0.12
38 13 0.10
39 19 0.14
40 42 0.32
41 12 0.09
42 5 0.04
43 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (36 bp):
GGCTAAGTCCCGAGCATTCTGCTAGTGATATATCCG
Found at i:56998319 original size:33 final size:33
Alignment explanation
Indices: 56998280--56998347 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
56998270 TGATAAGGCC
56998280 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
56998313 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
56998346 TA
1 TA
56998348 TATGTGATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (33 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:56998352 original size:27 final size:29
Alignment explanation
Indices: 56998288--56998355 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 29
56998278 CCTAATGGCC
56998288 GATGTGATGAATGTGAAAGTGTATATAAT
1 GATGTGATGAATGTGAAAGTGTATATAAT
56998317 GGCCGATGTGATGAATGTGAAAGTGTATAT-AT
1 ----GATGTGATGAATGTGAAAGTGTATATAAT
56998349 -ATGTGAT
1 GATGTGAT
56998356 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
27 7 0.20
32 2 0.06
33 26 0.74
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (29 bp):
GATGTGATGAATGTGAAAGTGTATATAAT
Found at i:56998358 original size:82 final size:78
Alignment explanation
Indices: 56998244--56998396 Score: 261
Period size: 82 Copynumber: 1.9 Consensus size: 78
56998234 TTAGGATTCT
56998244 ATGTGATGATGTGAAATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 ATGTGATGATGTGAAATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
56998309 TATATAATGGCCG
66 TATATAATGGCCG
*
56998322 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATG-ATGTGAAA-TG--CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
56998387 AGTGTATATA
62 AGTGTATATA
56998397 TGTGTATATA
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
78 8 0.11
79 8 0.11
80 2 0.03
82 52 0.74
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (78 bp):
ATGTGATGATGTGAAATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATAATGGCCG
Found at i:56998410 original size:57 final size:57
Alignment explanation
Indices: 56998344--56998457 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 57
56998334 TGAAAGTGTA
* * *
56998344 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
* * *
56998401 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTG
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
56998458 ACAGGGCCGA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.32
Consensus pattern (57 bp):
TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
Found at i:56998451 original size:47 final size:47
Alignment explanation
Indices: 56998398--56998506 Score: 202
Period size: 47 Copynumber: 2.3 Consensus size: 47
56998388 GTGTATATAT
56998398 GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
*
56998445 GTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
56998492 GTGTATA-ATGTGATA
1 GTGTATATATGTGATA
56998507 AGTCCCGAAG
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
46 7 0.12
47 53 0.88
ACGTcount: A:0.28, C:0.10, G:0.35, T:0.27
Consensus pattern (47 bp):
GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
Found at i:56998683 original size:37 final size:37
Alignment explanation
Indices: 56998627--56998705 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
56998617 CCGAGCTCTA
* *
56998627 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
56998664 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
56998701 AAGAC
1 AAGAC
56998706 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:57005241 original size:11 final size:11
Alignment explanation
Indices: 57005225--57005253 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
57005215 TATAAAAATT
57005225 TTCTATTAAAA
1 TTCTATTAAAA
57005236 TTCTATTAAAA
1 TTCTATTAAAA
57005247 TTC-ATTA
1 TTCTATTA
57005254 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:57006466 original size:15 final size:15
Alignment explanation
Indices: 57006446--57006479 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
57006436 CTCGGATGAA
* *
57006446 CAAAAATTGTACATC
1 CAAAAATGGAACATC
57006461 CAAAAATGGAACATC
1 CAAAAATGGAACATC
57006476 CAAA
1 CAAA
57006480 CATCAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:57007324 original size:30 final size:30
Alignment explanation
Indices: 57007288--57007347 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
57007278 ATGGATGTAA
*
57007288 CCAAATCATCTAGCAGGTCATAAAATATGG
1 CCAAATCATCTAGCAGATCATAAAATATGG
57007318 CCAAATCATCTAGCAGATCATAAAATATGG
1 CCAAATCATCTAGCAGATCATAAAATATGG
57007348 GACTACAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (30 bp):
CCAAATCATCTAGCAGATCATAAAATATGG
Found at i:57007663 original size:16 final size:16
Alignment explanation
Indices: 57007638--57007672 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
57007628 CAAAAGATAG
* *
57007638 ATATAGGCATTCATAC
1 ATATAAGCATTCACAC
57007654 ATATAAGCATTCACAC
1 ATATAAGCATTCACAC
57007670 ATA
1 ATA
57007673 AAATGAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (16 bp):
ATATAAGCATTCACAC
Found at i:57011169 original size:47 final size:49
Alignment explanation
Indices: 57011050--57011225 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 49
57011040 AACCCGCCCC
* *
57011050 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCACATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
**
57011096 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * * *
57011144 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
57011189 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
57011226 TCAACCATCC
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.54
47 28 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:57011170 original size:93 final size:93
Alignment explanation
Indices: 57011055--57011225 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
57011045 GCCCCTAAGT
* *
57011055 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
57011120 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * ** *
57011148 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
57011213 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57011226 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57013442 original size:8 final size:7
Alignment explanation
Indices: 57013425--57013564 Score: 50
Period size: 7 Copynumber: 19.6 Consensus size: 7
57013415 CCTTAACACT
57013425 TAAACCC
1 TAAACCC
57013432 TAAACCCC
1 TAAA-CCC
*
57013440 T-AACAC
1 TAAACCC
* *
57013446 TTAACAC
1 TAAACCC
*
57013453 TTAACCC
1 TAAACCC
**
57013460 TTATCCCC
1 -TAAACCC
*
57013468 TAACCCC
1 TAAACCC
*
57013475 TAACCCC
1 TAAACCC
* *
57013482 TAAATCT
1 TAAACCC
57013489 TAAACCC
1 TAAACCC
*
57013496 -CAACCC
1 TAAACCC
*
57013502 TTAAACCA
1 -TAAACCC
*
57013510 TAAACCA
1 TAAACCC
*
57013517 TAATCCC
1 TAAACCC
57013524 TAAACCC
1 TAAACCC
* *
57013531 ATAATCAC
1 -TAAACCC
57013539 TAAACCC
1 TAAACCC
* *
57013546 ATAATCCA
1 -TAAACCC
*
57013554 TAAACCT
1 TAAACCC
57013561 TAAA
1 TAAA
57013565 ATATTAACTC
Statistics
Matches: 101, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
6 8 0.08
7 71 0.70
8 22 0.22
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:57013450 original size:29 final size:28
Alignment explanation
Indices: 57013416--57013471 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
57013406 CATATGTCTC
57013416 CTTAACACTTAAACCCTAAACCCCTAACA
1 CTTAACACTT-AACCCTAAACCCCTAACA
* *
57013445 CTTAACACTTAACCCTTATCCCCTAAC
1 CTTAACACTTAACCCTAAACCCCTAAC
57013472 CCCTAACCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (28 bp):
CTTAACACTTAACCCTAAACCCCTAACA
Found at i:57013462 original size:14 final size:14
Alignment explanation
Indices: 57013415--57013462 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
57013405 ACATATGTCT
57013415 CCTTAACACTTAAAC
1 CCTTAACACTT-AAC
* * *
57013430 CCTAAACCCCTAAC
1 CCTTAACACTTAAC
*
57013444 ACTTAACACTTAAC
1 CCTTAACACTTAAC
57013458 CCTTA
1 CCTTA
57013463 TCCCCTAACC
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (14 bp):
CCTTAACACTTAAC
Found at i:57013478 original size:28 final size:29
Alignment explanation
Indices: 57013418--57013496 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 29
57013408 TATGTCTCCT
*
57013418 TAACACTTAAACCCTAAACCCCTAACACT
1 TAACACTTAAACCCTAAACCCCTAACACC
* * *
57013447 TAACACTT-AACCCTTATCCCCTAACCCC
1 TAACACTTAAACCCTAAACCCCTAACACC
* * * *
57013475 TAACCCCTAAATCTTAAACCCC
1 TAACACTTAAACCCTAAACCCC
57013497 AACCCTTAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
28 22 0.56
29 17 0.44
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (29 bp):
TAACACTTAAACCCTAAACCCCTAACACC
Found at i:57013500 original size:21 final size:22
Alignment explanation
Indices: 57013469--57013534 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 22
57013459 CTTATCCCCT
* *
57013469 AACCCCTAACCCCTAAATCTTA
1 AACCCCTAACCCCTAAACCATA
*
57013491 AACCCC-AACCCTTAAACCATA
1 AACCCCTAACCCCTAAACCATA
* *
57013512 AA-CCATAATCCCTAAACCCATA
1 AACCCCTAACCCCTAAA-CCATA
57013534 A
1 A
57013535 TCACTAAACC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 2 0.06
21 22 0.61
22 12 0.33
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCCTAAACCATA
Found at i:57013515 original size:15 final size:15
Alignment explanation
Indices: 57013497--57013559 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
57013487 CTTAAACCCC
*
57013497 AACCCTTAAACCATA
1 AACCCATAAACCATA
* *
57013512 AA-CCATAATCCCTA
1 AACCCATAAACCATA
*
57013526 AACCCAT-AATCACTA
1 AACCCATAAACCA-TA
*
57013541 AACCCATAATCCATA
1 AACCCATAAACCATA
57013556 AACC
1 AACC
57013560 TTAAAATATT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
14 13 0.35
15 21 0.57
16 3 0.08
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAAACCATA
Found at i:57013614 original size:7 final size:7
Alignment explanation
Indices: 57013602--57013672 Score: 65
Period size: 7 Copynumber: 10.0 Consensus size: 7
57013592 AACCTCTATC
57013602 CCCTTAA
1 CCCTTAA
57013609 CCCTTAA
1 CCCTTAA
* *
57013616 CCCCTATT
1 CCCTTA-A
57013624 CCCTTAA
1 CCCTTAA
57013631 CCCTTAA
1 CCCTTAA
*
57013638 CCCCTAA
1 CCCTTAA
57013645 CCAC-TAA
1 CC-CTTAA
57013652 CCAC-TAA
1 CC-CTTAA
57013659 CCCTTAA
1 CCCTTAA
*
57013666 ACCTTAA
1 CCCTTAA
57013673 ACTTTAAACC
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
6 1 0.02
7 48 0.87
8 6 0.11
ACGTcount: A:0.31, C:0.44, G:0.00, T:0.25
Consensus pattern (7 bp):
CCCTTAA
Found at i:57013616 original size:22 final size:22
Alignment explanation
Indices: 57013591--57013643 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
57013581 TATAAATCCC
*
57013591 TAACCTCTATCCCCTTAACCCT
1 TAACCCCTATCCCCTTAACCCT
*
57013613 TAACCCCTATTCCCTTAACCCT
1 TAACCCCTATCCCCTTAACCCT
57013635 TAACCCCTA
1 TAACCCCTA
57013644 ACCACTAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (22 bp):
TAACCCCTATCCCCTTAACCCT
Found at i:57013746 original size:14 final size:14
Alignment explanation
Indices: 57013719--57013747 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57013709 CTCATAAATA
57013719 ATAAACCCTAAACC
1 ATAAACCCTAAACC
57013733 ATAAACCCTAAACC
1 ATAAACCCTAAACC
57013747 A
1 A
57013748 AATGATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.34, G:0.00, T:0.14
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:57014111 original size:40 final size:40
Alignment explanation
Indices: 57014055--57014346 Score: 333
Period size: 40 Copynumber: 7.3 Consensus size: 40
57014045 TTTTGCAACA
* *
57014055 TTTTTAAAAAAATGCCGCTAATGCTCAATTTATAGCGGCAC
1 TTTTT-AAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
*
57014096 TTTTTTAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
1 TTTTTAAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
* *
57014136 TTTTTAAAAAAAGCCGCTAATGCTCGATCTATAGCGGCGC
1 TTTTTAAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
**
57014176 TTTTTAAAAAAAT-CCGCTAATGCTCGATCTATAGCGGTTC
1 TTTTT-AAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
* * * *
57014216 TTTTTCAAAAATGCCGCTAATGCTCGATCTACAGTGGCGC
1 TTTTTAAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
* * *
57014256 -TTTTAAAAAA-GCGCTGCTAATTCTCGATCTATAACGGC-G
1 TTTTTAAAAAATGC-C-GCTAATGCTCGATCTATAGCGGCAC
* * * *
57014295 TTTTTAAAAACACGCCACTAATGCTCGATCTATAACGG-AG
1 TTTTTAAAAA-ATGCCGCTAATGCTCGATCTATAGCGGCAC
57014335 TTTTTAGAAAAA
1 TTTTTA-AAAAA
57014347 GAAAAACGTC
Statistics
Matches: 220, Mismatches: 22, Indels: 19
0.84 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 16 0.07
40 183 0.83
41 17 0.08
42 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (40 bp):
TTTTTAAAAAATGCCGCTAATGCTCGATCTATAGCGGCAC
Found at i:57014209 original size:120 final size:119
Alignment explanation
Indices: 57014055--57014328 Score: 372
Period size: 120 Copynumber: 2.3 Consensus size: 119
57014045 TTTTGCAACA
* * *
57014055 TTTTTAAAAAAATGCCGCTAATGCTCAATTTATAGCGGCACTTTTTTAAAAATGCCGCTAATGCT
1 TTTTTAAAAAAAT-CCGCTAATGCTCGATCTATAGCGGCACTTTTTCAAAAATGCCGCTAATGCT
* *
57014120 CGATCTATAGCGGCACTTTTTAAAAAAAGC-C-GCTAATGCTCGATCTATAGCGGCG
65 CGATCTACAGCGGCAC-TTTT-AAAAAAGCGCTGCTAATGCTCGATCTATAACGGCG
**
57014175 CTTTTTAAAAAAATCCGCTAATGCTCGATCTATAGCGGTTCTTTTTCAAAAATGCCGCTAATGCT
1 -TTTTTAAAAAAATCCGCTAATGCTCGATCTATAGCGGCACTTTTTCAAAAATGCCGCTAATGCT
* * *
57014240 CGATCTACAGTGGCGCTTTTAAAAAAGCGCTGCTAATTCTCGATCTATAACGGCG
65 CGATCTACAGCGGCACTTTTAAAAAAGCGCTGCTAATGCTCGATCTATAACGGCG
** *
57014295 TTTTTAAAAACACGCCACTAATGCTCGATCTATA
1 TTTTTAAAAA-AATCCGCTAATGCTCGATCTATA
57014329 ACGGAGTTTT
Statistics
Matches: 137, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
118 8 0.06
119 15 0.11
120 101 0.74
121 13 0.09
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (119 bp):
TTTTTAAAAAAATCCGCTAATGCTCGATCTATAGCGGCACTTTTTCAAAAATGCCGCTAATGCTC
GATCTACAGCGGCACTTTTAAAAAAGCGCTGCTAATGCTCGATCTATAACGGCG
Found at i:57016214 original size:39 final size:39
Alignment explanation
Indices: 57016162--57016281 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
57016152 AATTATGTTA
57016162 CCAGCAC-AAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
57016200 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
57016239 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
57016278 CCAG
1 CCAG
57016282 TGTCTTGCTT
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
38 7 0.09
39 73 0.91
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:57022908 original size:39 final size:39
Alignment explanation
Indices: 57022863--57022983 Score: 190
Period size: 39 Copynumber: 3.1 Consensus size: 39
57022853 AATTATGTTA
*
57022863 CCAGCAC-AAGGCCTGCGGGACTTTAGCCCGGATAGATTT
1 CCAGCACGAA-GCCTGCGGGACTTTAGCCCGGATACATTT
57022902 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
57022941 CCAGCACGAAGCTTGCGGGTCTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
57022980 CCAG
1 CCAG
57022984 TGTCTTGCTT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 75 0.97
40 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:57026254 original size:24 final size:25
Alignment explanation
Indices: 57026227--57026278 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
57026217 GCCTAGCCTC
*
57026227 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTCGGGCAAAGCCCT
**
57026251 TTTTGGTAAACTCGGGCAAAGCCCT
1 TTTTAATAAACTCGGGCAAAGCCCT
57026276 TTT
1 TTT
57026279 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTCGGGCAAAGCCCT
Found at i:57026531 original size:27 final size:26
Alignment explanation
Indices: 57026484--57026624 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 26
57026474 GGGCAAAATG
* * * *
57026484 GTAATTTTACCCCACGAGGGTATCTC
1 GTAATTCTACCCTACAAGGGTATTTC
* *
57026510 AGTAATTCTACCCTATAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
57026537 GATATTTCTACCCTACAAGGGTATTTC
1 G-TAATTCTACCCTACAAGGGTATTTC
*
57026564 GGTAATTCTACCCTACAAGGATGT-TTTG
1 -GTAATTCTACCCTACAAGG--GTATTTC
57026592 GTAATTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
57026618 GATAATT
1 G-TAATT
57026625 TCACAAATCA
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.02
26 5 0.05
27 83 0.86
28 4 0.04
29 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTC
Found at i:57026600 original size:54 final size:54
Alignment explanation
Indices: 57026482--57026624 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 54
57026472 AGGGGCAAAA
* * * * * * * *
57026482 TGGTAATTTTACCCCACGAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATATTT
* * * *
57026536 CGATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATGTTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATATTT
*
57026590 TGGTAATTCTACCCTACAAGGGTATTTCGATAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATT
57026625 TCACAAATCA
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATATTT
Found at i:57026645 original size:54 final size:54
Alignment explanation
Indices: 57026482--57026651 Score: 148
Period size: 54 Copynumber: 3.1 Consensus size: 54
57026472 AGGGGCAAAA
* * * * ** *
57026482 TGGTAATTTTACCCCACGAGGGTATCTC-AGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACAATACAGGGGTATTT
* * * * ** * * *
57026536 CGATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATGTTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACAATACAGGGGTATTT
57026590 TGGTAATTCTACCCTACAAGGGTATTTCGATAATT-TCACAA-ATCAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGATAATTCT-ACAATA-CAGGGGTATTT
57026644 TGGTAATT
1 TGGTAATT
57026652 TTGTAAACCA
Statistics
Matches: 92, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
53 2 0.02
54 90 0.98
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACAATACAGGGGTATTT
Found at i:57033170 original size:5 final size:5
Alignment explanation
Indices: 57033157--57033226 Score: 54
Period size: 6 Copynumber: 13.0 Consensus size: 5
57033147 AAGAAAATTG
*
57033157 AAATGA AAATAA AAATCA AAAGAA AAATA AGAATA AAAT- AAATA AAATA
1 AAAT-A AAAT-A AAAT-A AAA-TA AAATA A-AATA AAATA AAATA AAATA
57033206 AGAAT- AAATAA AAATA AAATA
1 A-AATA AAAT-A AAATA AAATA
57033227 GGAGGATTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
4 7 0.13
5 18 0.33
6 29 0.54
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:57033172 original size:12 final size:11
Alignment explanation
Indices: 57033157--57033226 Score: 61
Period size: 12 Copynumber: 5.9 Consensus size: 11
57033147 AAGAAAATTG
57033157 AAATGAAAATAA
1 AAAT-AAAATAA
*
57033169 AAATCAAAAGAA
1 AAAT-AAAATAA
57033181 AAATAAGAATAAAA
1 AAATAA-AAT--AA
57033195 TAAATAAAATAA
1 -AAATAAAATAA
*
57033207 GAAT-AAATAA
1 AAATAAAATAA
57033217 AAATAAAATA
1 AAATAAAATA
57033227 GGAGGATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
10 9 0.19
11 10 0.21
12 18 0.38
14 5 0.10
15 6 0.12
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:57033201 original size:15 final size:14
Alignment explanation
Indices: 57033181--57033226 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
57033171 ATCAAAAGAA
57033181 AAATAAGAATAAAAT
1 AAATAA-AATAAAAT
57033196 AAATAAAATAAGAAT
1 AAATAAAATAA-AAT
57033211 AAATAAAAATAAAAT
1 AAAT-AAAATAAAAT
57033226 A
1 A
57033227 GGAGGATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.17
15 17 0.59
16 7 0.24
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:57033205 original size:20 final size:21
Alignment explanation
Indices: 57033180--57033226 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
57033170 AATCAAAAGA
*
57033180 AAAATAAGAATAAA-ATAAAT
1 AAAATAAGAATAAATAAAAAT
57033200 AAAATAAGAATAAATAAAAAT
1 AAAATAAGAATAAATAAAAAT
57033221 AAAATA
1 AAAATA
57033227 GGAGGATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (21 bp):
AAAATAAGAATAAATAAAAAT
Found at i:57036310 original size:38 final size:38
Alignment explanation
Indices: 57036249--57036437 Score: 288
Period size: 38 Copynumber: 4.9 Consensus size: 38
57036239 CACTCGATAC
* * *
57036249 ATATCCGGGTTAAGTCCCGCAGGCTTCGTACTGGCAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
57036287 ATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
57036325 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
57036363 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
57036401 ATATCCGGGCTTAAAGTTCCGCAGGCTTTGTGCTGGT
1 ATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGT
57036438 GACTAGATTC
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 116 0.83
39 5 0.04
40 19 0.14
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:57036676 original size:30 final size:30
Alignment explanation
Indices: 57036642--57036702 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
57036632 GATTACTATA
57036642 TTTACGAATAAGAGAATGACCTATTCGGTC
1 TTTACGAATAAGAGAATGACCTATTCGGTC
57036672 TTTACGAATAAGAGAATGACCTATTCGGTC
1 TTTACGAATAAGAGAATGACCTATTCGGTC
57036702 T
1 T
57036703 ATGTCTGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (30 bp):
TTTACGAATAAGAGAATGACCTATTCGGTC
Found at i:57038741 original size:46 final size:46
Alignment explanation
Indices: 57038640--57038727 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
57038630 TGTAACCCGC
* * * *
57038640 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
*
57038686 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
57038728 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.32, G:0.23, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:57045588 original size:38 final size:38
Alignment explanation
Indices: 57045537--57045705 Score: 191
Period size: 38 Copynumber: 4.4 Consensus size: 38
57045527 GGCACTCGAT
* *
57045537 ACATATCCGGGTTAAGTCTCGCAGGCTTCATGCTGGTA
1 ACATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
* * *
57045575 ACATAACTGGGTTAAATCCCGCAGGCTTCGTGCTGGT-
1 ACATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
* * *
57045612 ACTATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGATA
1 AC-ATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
* *
57045651 ATATATCCGGGTTAAATCCCGTAGGCTT-AGTGCTGGT-
1 ACATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTA
57045688 ACTATATCCGGGCTTAAA
1 AC-ATATCCGGG-TTAAA
57045706 GTTCTGCAGG
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
37 3 0.03
38 102 0.92
39 6 0.05
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (38 bp):
ACATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
Found at i:57045665 original size:76 final size:75
Alignment explanation
Indices: 57045539--57045725 Score: 248
Period size: 76 Copynumber: 2.4 Consensus size: 75
57045529 CACTCGATAC
* * * * *
57045539 ATATCCGGGTTAAGTCTCGCAGGCTTCATGCTGGTAACATAACTGGGTTAAATCCCGCAGGCTTC
1 ATATCCGGGTTAAATCT-GCAGGCTTCGTGCTGATAACATAACCGGGTTAAATCCCGCAGGCTTA
57045604 GTGCTGGTACT
65 GTGCTGGTACT
* * *
57045615 ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGATAATATATCCGGGTTAAATCCCGTAGGCTTA
1 ATATCCGGGTTAAAT-CTGCAGGCTTCGTGCTGATAACATAACCGGGTTAAATCCCGCAGGCTTA
57045680 GTGCTGGTACT
65 GTGCTGGTACT
*
57045691 ATATCCGGGCTTAAAGTTCTGCAGGCTTTGTGCTG
1 ATATCCGGG-TTAAA--TCTGCAGGCTTCGTGCTG
57045726 GTGACTGGAT
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
76 74 0.76
77 7 0.07
78 16 0.16
79 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (75 bp):
ATATCCGGGTTAAATCTGCAGGCTTCGTGCTGATAACATAACCGGGTTAAATCCCGCAGGCTTAG
TGCTGGTACT
Found at i:57052690 original size:15 final size:15
Alignment explanation
Indices: 57052672--57052724 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
57052662 CAAAACAAAT
57052672 AAATCCAAGACGGAA-
1 AAATCCAAGA-GGAAG
*
57052687 AAATCCAAGATGAAG
1 AAATCCAAGAGGAAG
*
57052702 AAATCCAAGA-TATAG
1 AAATCCAAGAGGA-AG
57052717 AAATCCAA
1 AAATCCAA
57052725 TATACGATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 4 0.12
15 30 0.88
ACGTcount: A:0.55, C:0.17, G:0.15, T:0.13
Consensus pattern (15 bp):
AAATCCAAGAGGAAG
Found at i:57069415 original size:43 final size:43
Alignment explanation
Indices: 57069289--57069445 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
57069279 CATCCATTAT
* * * * * *
57069289 GAACTCGGACCACTCAACGAGCTC-GAATGCTCGCATCTATAAT
1 GAACTCGGACCACTCAACAAGCTCAG-ATTCTCACATATATCAC
* * ** *
57069332 GAATTCAGACCACTCAATGAGCTC-GAATGCT-ACATATATCAC
1 GAACTCGGACCACTCAACAAGCTCAG-ATTCTCACATATATCAC
* *
57069374 GAACTTGGACCACTCAACAAGTTCAGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACAAGCTCAGATTCTCACATATATCAC
*
57069417 GAACTCGGACCACTCAACGAGCTCAGATT
1 GAACTCGGACCACTCAACAAGCTCAGATT
57069446 TCTTAATTCC
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 29 0.31
43 66 0.69
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (43 bp):
GAACTCGGACCACTCAACAAGCTCAGATTCTCACATATATCAC
Found at i:57082706 original size:55 final size:54
Alignment explanation
Indices: 57082597--57082805 Score: 235
Period size: 55 Copynumber: 3.9 Consensus size: 54
57082587 CATTAGGGTT
* * *
57082597 TAAGGATACCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTT-TCTAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGG
* * * *
57082652 TAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG
* * * *
57082707 AAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG
1 -TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
* * *
57082760 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
57082806 TCAAAAGGAT
Statistics
Matches: 129, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 44 0.34
54 8 0.06
55 69 0.53
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
Found at i:57082804 original size:108 final size:110
Alignment explanation
Indices: 57082605--57082805 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
57082595 TTTAAGGATA
* *
57082605 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
57082670 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
* * *
57082715 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
57082777 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
57082806 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
Found at i:57083063 original size:20 final size:20
Alignment explanation
Indices: 57083038--57083077 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57083028 TTATTAATAA
*
57083038 ATTTAATTAAGTAAGTAAGT
1 ATTTAAGTAAGTAAGTAAGT
*
57083058 ATTTAAGTAAGTGAGTAAGT
1 ATTTAAGTAAGTAAGTAAGT
57083078 GAAGAAGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (20 bp):
ATTTAAGTAAGTAAGTAAGT
Found at i:57083065 original size:16 final size:16
Alignment explanation
Indices: 57083044--57083074 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57083034 ATAAATTTAA
57083044 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
57083060 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
57083075 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:57084894 original size:4 final size:4
Alignment explanation
Indices: 57084885--57084909 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
57084875 TGTAGGTGTA
57084885 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
57084910 CTAGTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:57085610 original size:16 final size:16
Alignment explanation
Indices: 57085589--57085626 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
57085579 TCGGCAAATC
57085589 CCAAAATACCGAAAAG
1 CCAAAATACCGAAAAG
*
57085605 CCAAAATACTGAAAAG
1 CCAAAATACCGAAAAG
*
57085621 TCAAAA
1 CCAAAA
57085627 GTTTGACTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.58, C:0.21, G:0.11, T:0.11
Consensus pattern (16 bp):
CCAAAATACCGAAAAG
Found at i:57085921 original size:28 final size:28
Alignment explanation
Indices: 57085839--57085928 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 28
57085829 TGAGTATGAC
57085839 TATAAATGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
57085868 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
*
57085897 TATAAATGTGATTGGGTCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
57085925 TATA
1 TATA
57085929 CAAGTATGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
28 20 0.36
29 36 0.64
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:57088965 original size:43 final size:43
Alignment explanation
Indices: 57088910--57088994 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
57088900 TAATATATGT
* * *
57088910 AGCATCTGAGCTCATTGATTGGTCCAAGTTCATTATGGATGCA
1 AGCATCTAAGCTCATTGAGTGGTCCAAGTTCATAATGGATGCA
*
57088953 AGCATCTAAGCTCTTTGAGTGGTCCAAGTTCATAATGGATGC
1 AGCATCTAAGCTCATTGAGTGGTCCAAGTTCATAATGGATGC
57088995 GATACATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
AGCATCTAAGCTCATTGAGTGGTCCAAGTTCATAATGGATGCA
Found at i:57093405 original size:78 final size:78
Alignment explanation
Indices: 57093270--57093492 Score: 281
Period size: 78 Copynumber: 2.8 Consensus size: 78
57093260 TTGAATGATG
* * * * *
57093270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATT
*
57093334 TGTGCGAGATACTAAT
63 TGTGCGAGATACTAAA
*
57093350 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGGCATTTG
*
57093414 TGCGAGTTACTAAA
65 TGCGAGATACTAAA
* *
57093428 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCGAAGGCATTT
57093492 G
64 G
57093493 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 59 0.46
79 20 0.16
80 45 0.35
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:57093506 original size:39 final size:40
Alignment explanation
Indices: 57093270--57093492 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
57093260 TTGAATGATG
* * * *
57093270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
57093310 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
57093350 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57093388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57093428 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57093469 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57093493 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 35 0.21
39 13 0.08
40 107 0.65
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57093514 original size:118 final size:118
Alignment explanation
Indices: 57093270--57093525 Score: 297
Period size: 118 Copynumber: 2.2 Consensus size: 118
57093260 TTGAATGATG
* *
57093270 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
57093335 GTGCGAGATACTAATTCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
57093388 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
57093451 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCGAAGGCATTTGAACGAGTTA-CTAAA
* *
57093507 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
57093526 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
117 3 0.03
118 84 0.71
119 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCGAAGGCATTTGAACGAGTTACTAAA
Done.