Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 173 of 332
Found at i:57093522 original size:39 final size:40
Alignment explanation
Indices: 57093270--57093525 Score: 231
Period size: 40 Copynumber: 6.5 Consensus size: 40
57093260 TTGAATGATG
* * * * * *
57093270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
57093310 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57093350 TCCGGGCT-AA-GCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57093388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57093428 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA-AA
* ** ** *
57093469 -CCGGGCTATGT-CCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTA-CTAAA
*
57093507 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
57093526 TACGTGATTT
Statistics
Matches: 185, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
38 41 0.22
39 31 0.17
40 103 0.56
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57098215 original size:79 final size:81
Alignment explanation
Indices: 57098079--57098261 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
57098069 TCGAATGATG
* *
57098079 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
57098143 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
57098158 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
57098220 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
57098238 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57098262 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:57098277 original size:40 final size:40
Alignment explanation
Indices: 57098080--57098263 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
57098070 CGAATGATGT
* * * *
57098080 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
57098120 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
57098160 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57098198 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57098239 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57098264 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:57098285 original size:79 final size:79
Alignment explanation
Indices: 57098132--57098296 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
57098122 GGACTAAGAT
* **
57098132 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
57098197 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
57098211 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
57098274 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
57098290 CCGAAGG
1 CCGAAGG
57098297 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:57106283 original size:79 final size:81
Alignment explanation
Indices: 57106147--57106329 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
57106137 TCGAATGATG
* *
57106147 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
57106211 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
57106226 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
57106288 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
57106306 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57106330 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:57106345 original size:40 final size:40
Alignment explanation
Indices: 57106148--57106331 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
57106138 CGAATGATGT
* * * *
57106148 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
57106188 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
57106228 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57106266 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57106307 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57106332 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:57112243 original size:24 final size:24
Alignment explanation
Indices: 57112211--57112281 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
57112201 CTGTCAGAAG
57112211 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
57112235 AGGATTTAGGAGTTGATAAAGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
57112259 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
57112282 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:57112293 original size:48 final size:47
Alignment explanation
Indices: 57112211--57112305 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 47
57112201 CTGTCAGAAG
** * *
57112211 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGATAAAGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATAAAGGAT
*
57112259 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGGA
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATAAAGGA
57112306 ACAAGAGGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
46 3 0.08
48 37 0.93
ACGTcount: A:0.37, C:0.04, G:0.36, T:0.23
Consensus pattern (47 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATAAAGGAT
Found at i:57113751 original size:28 final size:27
Alignment explanation
Indices: 57113686--57113770 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
57113676 AGGAAGCGTC
*
57113686 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
57113713 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
57113741 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
57113767 CTGG
1 CTGG
57113771 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.09
27 32 0.60
28 16 0.30
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:57116313 original size:43 final size:43
Alignment explanation
Indices: 57116208--57116329 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
57116198 ACTTCTGTTT
** * *
57116208 TACATGTAAGATAATGTTTGGGACA-TCGGCATCGTATCTGAT
1 TACATGTAAGACCACGTTTGGGACAGTCGGCATCGTATCTGAC
* * *
57116250 TTCATGTAAGACC-CTGTTTGGGACAGT-GGCATCGATGTTTGAC
1 TACATGTAAGACCAC-GTTTGGGACAGTCGGCATCG-TATCTGAC
*
57116293 TACATGTAAGACCACGTTTGGGAC-GTCGGCATTGTAT
1 TACATGTAAGACCACGTTTGGGACAGTCGGCATCGTAT
57116330 ATACTTTCTG
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
42 31 0.48
43 33 0.51
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TACATGTAAGACCACGTTTGGGACAGTCGGCATCGTATCTGAC
Found at i:57121421 original size:27 final size:28
Alignment explanation
Indices: 57121361--57121415 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
57121351 TAAAATAATT
*
57121361 AAAATTAAATATGTTAATAATTTAAGTG
1 AAAATTAAATATGTTAATAATTAAAGTG
* *
57121389 AAAATTAATTAT-TTTATAATTAAAGTG
1 AAAATTAAATATGTTAATAATTAAAGTG
57121416 TGAATTTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (28 bp):
AAAATTAAATATGTTAATAATTAAAGTG
Found at i:57124757 original size:25 final size:25
Alignment explanation
Indices: 57124729--57124777 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
57124719 CTAGAGAACC
* *
57124729 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
57124754 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
57124778 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:57139820 original size:28 final size:28
Alignment explanation
Indices: 57139722--57139823 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
57139712 ATAGTAAGTC
*
57139722 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
57139750 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
57139779 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
57139807 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
57139824 GCAATTTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 42 0.61
29 27 0.39
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:57139842 original size:57 final size:57
Alignment explanation
Indices: 57139724--57139849 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 57
57139714 AGTAAGTCCG
* * *
57139724 CACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA
* * * *
57139781 CACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACCCA
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCCA
57139838 CACACTTAGTGC
1 CACACTTAGTGC
57139850 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 58 0.95
58 3 0.05
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.29
Consensus pattern (57 bp):
CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA
Found at i:57142461 original size:26 final size:26
Alignment explanation
Indices: 57142432--57142483 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
57142422 AGTTAGAAAA
57142432 ATCGAAAACCTAGAAAATTTACATTT
1 ATCGAAAACCTAGAAAATTTACATTT
57142458 ATCGAAAACCTAGAAAATTTACATTT
1 ATCGAAAACCTAGAAAATTTACATTT
57142484 TTTTCTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCGAAAACCTAGAAAATTTACATTT
Found at i:57144910 original size:2 final size:2
Alignment explanation
Indices: 57144903--57144964 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
57144893 CATTCCTTTC
*
57144903 CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
57144945 CT CT CT CT CT CT CT GT CT CT
1 CT CT CT CT CT CT CT CT CT CT
57144965 TTTCCCCTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.47, G:0.02, T:0.52
Consensus pattern (2 bp):
CT
Found at i:57147003 original size:13 final size:12
Alignment explanation
Indices: 57146972--57146996 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57146962 TCCTGAATCA
57146972 TGATTTAATTTT
1 TGATTTAATTTT
57146984 TGATTTAATTTT
1 TGATTTAATTTT
57146996 T
1 T
57146997 TAGTTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TGATTTAATTTT
Found at i:57147915 original size:44 final size:43
Alignment explanation
Indices: 57147832--57147997 Score: 143
Period size: 48 Copynumber: 3.6 Consensus size: 43
57147822 CATGTTTAGC
* ** *
57147832 AGAGAAAAGGAAATTGGGAAAAAGAAAGGTCACAGGGAAAAACA
1 AGAGAAAAGGAAATTGGGAAGAAGAAACATCACA-GGAAAAAAA
57147876 AGAGAAAAGGAAATTGGGAAGAAGAAACATCAGCAGGAAAAAGAAA
1 AGAGAAAAGGAAATTGGGAAGAAGAAACATCA-CAGG-AAAA-AAA
* * * *
57147922 TAAAAAAAAGGGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAA
1 -AGAGAAAA-GGAAATTGGGAAGAAGAAACATCA-CAGGAAAAA-AA
* * *
57147969 AGAAAAAAAAAGAAATAGGGAAGAAGAAA
1 AG--AGAAAAGGAAATTGGGAAGAAGAAA
57147998 TGTCACCCAT
Statistics
Matches: 103, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
44 31 0.30
45 6 0.06
46 4 0.04
47 30 0.29
48 32 0.31
ACGTcount: A:0.61, C:0.05, G:0.27, T:0.07
Consensus pattern (43 bp):
AGAGAAAAGGAAATTGGGAAGAAGAAACATCACAGGAAAAAAA
Found at i:57147977 original size:47 final size:47
Alignment explanation
Indices: 57147880--57148037 Score: 208
Period size: 48 Copynumber: 3.3 Consensus size: 47
57147870 AAAACAAGAG
* * ** *
57147880 AAAAGGAAATTGGGAAGAAGAAACATCAGCAGGAAAAAGAAATAAAA
1 AAAAAGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA
*
57147927 AAAAGGGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA
1 AAAA-AGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA
*
57147975 AAAAAGAAATAGGGAAGAAGAAATGTCACCCATTAGGAAAAAGAAAGAAAA
1 AAAAAGAAATAGGGAAGAAGAAA---CA-TCATTAGGAAAAAGAAAGAAAA
57148026 AAAAAGAAATAG
1 AAAAAGAAATAG
57148038 TTTTAAAAGT
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
47 22 0.22
48 43 0.43
50 2 0.02
51 33 0.33
ACGTcount: A:0.63, C:0.06, G:0.23, T:0.09
Consensus pattern (47 bp):
AAAAAGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA
Found at i:57157868 original size:46 final size:46
Alignment explanation
Indices: 57157801--57157972 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
57157791 AACCCGCCCC
*
57157801 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
57157847 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
57157895 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
57157940 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
57157973 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:57157913 original size:93 final size:93
Alignment explanation
Indices: 57157806--57157976 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
57157796 GCCCCTAAGT
* *
57157806 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57157871 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
57157899 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57157964 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57157977 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57160174 original size:741 final size:742
Alignment explanation
Indices: 57158709--57160176 Score: 2605
Period size: 741 Copynumber: 2.0 Consensus size: 742
57158699 TTCGAAAGCG
57158709 CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC
1 CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC
57158774 AAGCATAATTGGGAAGTTATTCTTGTCCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGATA
66 AAGCATAATTGGGAAGTTATTCTTGTCCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGATA
57158839 GTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAGTACATAATTTTTTCTGGATTAA
131 GTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAGTACATAATTTTTTCTGGATTAA
57158904 TATGAAATTTTGAATTATATGGTAGAAAAATGAAAGGTTTTTATAGATAAAAAAAAACTTTACAA
196 TATGAAATTTTGAATTATATGGTAGAAAAATGAAAGGTTTTTATAGATAAAAAAAAACTTTACAA
57158969 AGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCATGGAAAATTT
261 AGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCATGGAAAATTT
57159034 TGATTTTAATGAAAATCATGGCTATTTATTGTAACATGTAAAATTCGTTTAGGCTTGGGATAAAA
326 TGATTTTAATGAAAATCATGGCTATTTATTGTAACATGTAAAATTCGTTTAGGCTTGGGATAAAA
57159099 CGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCTAAGGATGAAATTGAAACTTA
391 CGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCTAAGGATGAAATTGAAACTTA
57159164 TGGAAAAGTTTATGGGCAAAATGTAATTTATACCTAGGGAATAAAATTGAATTACAATTGAATAT
456 TGGAAAAGTTTATGGGCAAAATGTAATTTATACCTAGGGAATAAAATTGAATTACAATTGAATAT
57159229 GAAATGATGAATTAAATTTATGGTTAAATTCATTTATAAGATCCGAAAAAACTCAAATCGAAGCT
521 GAAA-GATGAATTAAATTTATGGTTAAATTCATTTATAAGATCCGAAAAAACTCAAATCGAAGCT
57159294 AGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGATGATTATTAAGGTAA
585 AGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGATGATTATTAAGGTAA
57159359 GTTCGTGTACAGAAATTGTGACATATATATGCTTGTATTGAATGTGTTTCTGTGATTGTATGAAA
650 GTTCGTGTACAGAAATTGTGACATATATATGCTTGTATTGAATGTGTTTCTGTGATTGTATGAAA
57159424 ATGAGATGTTTACGAAGGACGTGTTCGA
715 ATGAGATGTTTACGAAGGACGTGTTCGA
57159452 CTCCAGCGACGGTCTCGGG-TTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC
1 CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC
57159516 AAGCATAATTGGGAAG-TATTCTTGTCCCATTTTTAGTAATTT-TTATATTTTTGAGATCGGGAT
66 AAGCATAATTGGGAAGTTATTCTTGT-CCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGAT
57159579 AGTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAAGTACATAAATTTTTTCTTGGA
130 AGTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATC-AAGTACAT-AATTTTTTC-TGGA
57159644 TTAATATGAAATTTTGAAATT-TATGGTAG-AAAATGAAAGGTTTTTTATAGAT-AAAAAAAACT
192 TTAATATGAAATTTTG-AATTATATGGTAGAAAAATGAAAGG-TTTTTATAGATAAAAAAAAAC-
57159706 TTTACAAAGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCCATG
254 TTTACAAAGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAA-CCATG
*
57159771 GAAAAATTTTGATTTTTATGAAAATCATGGGCTA-TTATTGTAACATGTAAAATTCGTTTAGGCT
318 G-AAAATTTTGATTTTAATGAAAATCAT-GGCTATTTATTGTAACATGTAAAATTCGTTTAGGCT
57159835 TGGGATAAAGA-GCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCCTAAGGATGA
381 TGGGATAAA-ACGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAG-CTAAGGATGA
*
57159899 AATTGAAACTTATGG-AAAGTTTATGGGCAAAATGGTAATTT-TACCTAGGGTAT-AAATTGAAT
444 AATTGAAACTTATGGAAAAGTTTATGGGCAAAAT-GTAATTTATACCTAGGGAATAAAATTGAAT
57159961 T-CAATTGAATATG-AA-ATGAATTAAATTTATGGTTAAATTCATTTATATAGATCCG-AAAAAC
508 TACAATTGAATATGAAAGATGAATTAAATTTATGGTTAAATTCATTTATA-AGATCCGAAAAAAC
57160022 TCAAATTCGAAGCTAGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTT-ATTGTATGGAT
572 TCAAA-TCGAAGCTAGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGAT
*
57160086 GATTATTAAGGTAAGTTCGTGTAACCG-AATTGTGTACATATATATGCTTGTATTGAATGTG-TT
636 GATTATTAAGGTAAGTTCGTGT-ACAGAAATTGTG-ACATATATATGCTTGTATTGAATGTGTTT
57160149 CTGTGATTGTATGAAATAT-AGATGTTTA
699 CTGTGATTGTATGAAA-ATGAGATGTTTA
57160177 AAGTATGAAA
Statistics
Matches: 704, Mismatches: 3, Indels: 38
0.94 0.00 0.05
Matches are distributed among these distances:
741 181 0.26
742 170 0.24
743 50 0.07
744 110 0.16
745 20 0.03
746 135 0.19
747 38 0.05
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35
Consensus pattern (742 bp):
CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC
AAGCATAATTGGGAAGTTATTCTTGTCCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGATA
GTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAGTACATAATTTTTTCTGGATTAA
TATGAAATTTTGAATTATATGGTAGAAAAATGAAAGGTTTTTATAGATAAAAAAAAACTTTACAA
AGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCATGGAAAATTT
TGATTTTAATGAAAATCATGGCTATTTATTGTAACATGTAAAATTCGTTTAGGCTTGGGATAAAA
CGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCTAAGGATGAAATTGAAACTTA
TGGAAAAGTTTATGGGCAAAATGTAATTTATACCTAGGGAATAAAATTGAATTACAATTGAATAT
GAAAGATGAATTAAATTTATGGTTAAATTCATTTATAAGATCCGAAAAAACTCAAATCGAAGCTA
GATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGATGATTATTAAGGTAAG
TTCGTGTACAGAAATTGTGACATATATATGCTTGTATTGAATGTGTTTCTGTGATTGTATGAAAA
TGAGATGTTTACGAAGGACGTGTTCGA
Found at i:57163334 original size:91 final size:93
Alignment explanation
Indices: 57163184--57163352 Score: 288
Period size: 91 Copynumber: 1.8 Consensus size: 93
57163174 AGATGGTTGA
* *
57163184 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
57163249 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
57163277 GCATCCGAACTC-TTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
57163340 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57163353 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 50 0.69
92 11 0.15
93 11 0.15
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57163357 original size:46 final size:46
Alignment explanation
Indices: 57163189--57163357 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
57163179 GTTGAGCATT
* *
57163189 CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
* * *
57163235 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--C
57163282 CGAACTC-TTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
*
57163326 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57163358 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 7 0.07
45 20 0.19
46 54 0.52
47 8 0.08
48 5 0.05
49 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
Found at i:57173550 original size:40 final size:40
Alignment explanation
Indices: 57173488--57173667 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
57173478 TTCGGATGAC
57173488 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
57173528 ATCCAGGCTAAGTCCCGTAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
57173568 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
57173608 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
57173648 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
57173668 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.12
40 112 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:57176421 original size:19 final size:19
Alignment explanation
Indices: 57176378--57176421 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
57176368 AAATTATGAC
57176378 AAATTCAAAATTAAGGAGT
1 AAATTCAAAATTAAGGAGT
*
57176397 AGAATTGAAAA-TAAGGAGCT
1 A-AATTCAAAATTAAGGAG-T
57176417 AAATT
1 AAATT
57176422 TAGCTTAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.52, C:0.05, G:0.18, T:0.25
Consensus pattern (19 bp):
AAATTCAAAATTAAGGAGT
Found at i:57178339 original size:13 final size:13
Alignment explanation
Indices: 57178321--57178352 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
57178311 ATCTCGAAAG
57178321 CCACACGGCCGTT
1 CCACACGGCCGTT
57178334 CCACACGGCCGTT
1 CCACACGGCCGTT
*
57178347 TCACAC
1 CCACAC
57178353 AGTCATGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.47, G:0.19, T:0.16
Consensus pattern (13 bp):
CCACACGGCCGTT
Found at i:57179173 original size:21 final size:21
Alignment explanation
Indices: 57179147--57179198 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
57179137 GGTACCCTTC
*
57179147 AAATCAGGACGCACGACGGGA
1 AAATCAGGACGCACAACGGGA
57179168 AAATCAGGACGCACAACGGGA
1 AAATCAGGACGCACAACGGGA
* *
57179189 CAATTAGGAC
1 AAATCAGGAC
57179199 ACTGTCATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.40, C:0.23, G:0.29, T:0.08
Consensus pattern (21 bp):
AAATCAGGACGCACAACGGGA
Found at i:57180583 original size:9 final size:9
Alignment explanation
Indices: 57180569--57180598 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
57180559 AGCTAACTCA
57180569 AACCTAAAT
1 AACCTAAAT
57180578 AACCTAAAT
1 AACCTAAAT
57180587 AACCTAAAT
1 AACCTAAAT
57180596 AAC
1 AAC
57180599 AAACTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (9 bp):
AACCTAAAT
Found at i:57180984 original size:15 final size:17
Alignment explanation
Indices: 57180964--57181005 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
57180954 TTAGCTCTCC
57180964 TACTATATTATAT-A-A
1 TACTATATTATATCATA
*
57180979 TACTATATAATATCATA
1 TACTATATTATATCATA
*
57180996 TAATATATTA
1 TACTATATTA
57181006 ATAGTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 12 0.55
16 1 0.05
17 9 0.41
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (17 bp):
TACTATATTATATCATA
Found at i:57181095 original size:23 final size:26
Alignment explanation
Indices: 57181057--57181111 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
57181047 CATGTAATAC
*
57181057 TATATATATTGTTAT-AATATATT-T
1 TATATATATAGTTATAAATATATTAT
57181081 TATATA-ATAGTTATAGAATATATTAT
1 TATATATATAGTTATA-AATATATTAT
57181107 TATAT
1 TATAT
57181112 TATCATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 7 0.26
24 6 0.22
25 8 0.30
26 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (26 bp):
TATATATATAGTTATAAATATATTAT
Found at i:57182008 original size:4 final size:4
Alignment explanation
Indices: 57181992--57182029 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
57181982 AACAAATACA
*
57181992 AATT AATT TATT AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AA
57182030 GAATTCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:57183104 original size:21 final size:21
Alignment explanation
Indices: 57183080--57183123 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
57183070 CTCTTCAATT
57183080 GACACTCACAGCAGACTCAAA
1 GACACTCACAGCAGACTCAAA
57183101 GACACTCACAGCAGACTCAAA
1 GACACTCACAGCAGACTCAAA
57183122 GA
1 GA
57183124 AGCTCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.32, G:0.16, T:0.09
Consensus pattern (21 bp):
GACACTCACAGCAGACTCAAA
Found at i:57186115 original size:379 final size:379
Alignment explanation
Indices: 57185416--57186160 Score: 1481
Period size: 379 Copynumber: 2.0 Consensus size: 379
57185406 GCATTCAATA
*
57185416 GCAATAAATTATAATGAGAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
57185481 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
57185546 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
57185611 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
57185676 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
57185741 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
57185795 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
57185860 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
57185925 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
57185990 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
57186055 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
57186120 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA
57186161 TCATTTTATT
Statistics
Matches: 365, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
379 365 1.00
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.24
Consensus pattern (379 bp):
GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
Found at i:57186164 original size:15 final size:15
Alignment explanation
Indices: 57186144--57186175 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
57186134 AAATTTCCCC
57186144 AATCATCTTATTTCT
1 AATCATCTTATTTCT
*
57186159 AATCATTTTATTTCT
1 AATCATCTTATTTCT
57186174 AA
1 AA
57186176 GAAACTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (15 bp):
AATCATCTTATTTCT
Found at i:57186887 original size:64 final size:64
Alignment explanation
Indices: 57186808--57186954 Score: 285
Period size: 64 Copynumber: 2.3 Consensus size: 64
57186798 TATAGTATTT
57186808 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
*
57186872 AAATTAAAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
57186936 AAATTAGAGGATTCGAACT
1 AAATTAGAGGATTCGAACT
57186955 AATATAACAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (64 bp):
AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
Found at i:57190539 original size:21 final size:21
Alignment explanation
Indices: 57190513--57190567 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
57190503 ACCATTGTTT
57190513 CTAATCTCACCGCTACAGT-A
1 CTAATCTCACCGCTACAGTAA
57190533 CTCAATCTCACCGCTACAGTAA
1 CT-AATCTCACCGCTACAGTAA
57190555 CTAATCTCACCGC
1 CTAATCTCACCGC
57190568 CACCGCTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.06
21 28 0.85
22 3 0.09
ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:57195898 original size:28 final size:29
Alignment explanation
Indices: 57195858--57195942 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 29
57195848 CCAGGTTTTT
*
57195858 GGACACGGGCGTGT-CTAGGCCGTGTGAG
1 GGACACGGGCGTGTGCTCGGCCGTGTGAG
* * *
57195886 GGACACGAGCGTGTGCTCTGCCATGTGAG
1 GGACACGGGCGTGTGCTCGGCCGTGTGAG
* *
57195915 GGACATGGGCGTGTGCTCGACCGTGTGA
1 GGACACGGGCGTGTGCTCGGCCGTGTGA
57195943 AAACCCCTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 13 0.28
29 34 0.72
ACGTcount: A:0.15, C:0.22, G:0.42, T:0.20
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTCGGCCGTGTGAG
Found at i:57198510 original size:6 final size:7
Alignment explanation
Indices: 57198470--57198549 Score: 67
Period size: 7 Copynumber: 11.4 Consensus size: 7
57198460 TTCAATCCCT
*
57198470 AATTTCC
1 AATTTTC
57198477 AATTTT-
1 AATTTTC
57198483 ATATTTTC
1 A-ATTTTC
* *
57198491 AATCTCC
1 AATTTTC
57198498 AAATTTT-
1 -AATTTTC
57198505 AATTTTC
1 AATTTTC
*
57198512 AATTTCC
1 AATTTTC
*
57198519 AATTTCC
1 AATTTTC
57198526 AATTTTC
1 AATTTTC
57198533 AA-TTTC
1 AATTTTC
57198539 GAATTTTC
1 -AATTTTC
57198547 AAT
1 AAT
57198550 CCTCAATCCT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
6 11 0.18
7 40 0.67
8 9 0.15
ACGTcount: A:0.31, C:0.17, G:0.01, T:0.50
Consensus pattern (7 bp):
AATTTTC
Found at i:57198528 original size:14 final size:14
Alignment explanation
Indices: 57198485--57198549 Score: 78
Period size: 14 Copynumber: 4.6 Consensus size: 14
57198475 CCAATTTTAT
*
57198485 ATTTTCAATCTCCAA
1 ATTTTCAATTTCC-A
*
57198500 ATTTT-AATTTTCA
1 ATTTTCAATTTCCA
*
57198513 ATTTCCAATTTCCA
1 ATTTTCAATTTCCA
*
57198527 ATTTTCAATTTCGA
1 ATTTTCAATTTCCA
57198541 ATTTTCAAT
1 ATTTTCAAT
57198550 CCTCAATCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
13 5 0.12
14 33 0.77
15 5 0.12
ACGTcount: A:0.31, C:0.18, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTTTCAATTTCCA
Found at i:57198549 original size:21 final size:20
Alignment explanation
Indices: 57198470--57198545 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 20
57198460 TTCAATCCCT
57198470 AATTTCCAATTTTATATTTTC
1 AATTTCCAATTTTA-ATTTTC
*
57198491 AATCTCCAAATTTTAATTTTC
1 AATTTCC-AATTTTAATTTTC
*
57198512 AATTTCCAATTTCCAATTTTC
1 AATTTCCAATTT-TAATTTTC
*
57198533 AATTTCGAATTTT
1 AATTTCCAATTTT
57198546 CAATCCTCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.10
21 36 0.75
22 7 0.15
ACGTcount: A:0.30, C:0.17, G:0.01, T:0.51
Consensus pattern (20 bp):
AATTTCCAATTTTAATTTTC
Found at i:57198555 original size:21 final size:21
Alignment explanation
Indices: 57198510--57198556 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
57198500 ATTTTAATTT
**
57198510 TCAATTTCCAATTTCCAATTT
1 TCAATTTCCAATTTCCAATCC
* *
57198531 TCAATTTCGAATTTTCAATCC
1 TCAATTTCCAATTTCCAATCC
57198552 TCAAT
1 TCAAT
57198557 CCTCAAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.23, G:0.02, T:0.45
Consensus pattern (21 bp):
TCAATTTCCAATTTCCAATCC
Found at i:57201025 original size:18 final size:20
Alignment explanation
Indices: 57200997--57201045 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
57200987 TTTTATATGT
*
57200997 AAAAT-TATAAAAATT-TCA
1 AAAATATATAAAAATTCTAA
*
57201015 AAAATAT-TAAAGATTCTAA
1 AAAATATATAAAAATTCTAA
57201034 AAAATATATAAA
1 AAAATATATAAA
57201046 GAAATTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 12 0.46
19 10 0.38
20 4 0.15
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAATATATAAAAATTCTAA
Found at i:57204701 original size:35 final size:36
Alignment explanation
Indices: 57204631--57204715 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 36
57204621 TACCAATACA
*
57204631 ACCGAATATACAAGATCCATTATATCATCACATATG
1 ACCGAATATACAAGATCCAATATATCATCACATATG
* * * * *
57204667 GCCGAATATACATG-TTCAATATGTCATCATATATG
1 ACCGAATATACAAGATCCAATATATCATCACATATG
57204702 ACCGAATATACAAG
1 ACCGAATATACAAG
57204716 TTAAGTAGAA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 29 0.71
36 12 0.29
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (36 bp):
ACCGAATATACAAGATCCAATATATCATCACATATG
Found at i:57204730 original size:35 final size:35
Alignment explanation
Indices: 57204631--57204771 Score: 103
Period size: 35 Copynumber: 4.0 Consensus size: 35
57204621 TACCAATACA
* *
57204631 ACCGAATATACAAGATCCATTAT-ATCATCACATATG
1 ACCGAATATACAAG-TTCAATATGA-CATCACATATG
* * * *
57204667 GCCGAATATACATGTTCAATATGTCATCATATATG
1 ACCGAATATACAAGTTCAATATGACATCACATATG
*
57204702 ACCGAATATACAAGTT-AAGTA-GAACATCACTTAT-
1 ACCGAATATACAAGTTCAA-TATG-ACATCACATATG
* * *
57204736 AGCCAAATTTTCAAGTTCAATAT-ATCATCACATATG
1 A-CCGAATATACAAGTTCAATATGA-CATCACATATG
57204772 TACATACCAA
Statistics
Matches: 82, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
34 5 0.06
35 63 0.77
36 14 0.17
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (35 bp):
ACCGAATATACAAGTTCAATATGACATCACATATG
Found at i:57212571 original size:35 final size:35
Alignment explanation
Indices: 57212451--57212576 Score: 130
Period size: 35 Copynumber: 3.6 Consensus size: 35
57212441 AATACATAAG
* * *
57212451 GTTCATTATATCATCACATATGGCCAAATATACAT
1 GTTCAATATATCATCACATATAGCCAAATATACAA
* *
57212486 GTTCAATATGTCA-C-CATATACGACCGAATATACAA
1 GTTCAATATATCATCACATATA-G-CCAAATATACAA
* * * * *
57212521 GTTAAATAGAACATCACTTATAGCCAAATTTACAA
1 GTTCAATATATCATCACATATAGCCAAATATACAA
57212556 GTTCAATATATCATCACATAT
1 GTTCAATATATCATCACATAT
57212577 GTACATACCT
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
33 5 0.07
34 2 0.03
35 57 0.80
36 2 0.03
37 5 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (35 bp):
GTTCAATATATCATCACATATAGCCAAATATACAA
Found at i:57218672 original size:24 final size:24
Alignment explanation
Indices: 57218645--57218700 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
57218635 GATTTTATAT
** *
57218645 TTTATTAGTTTAATATATTTAACA
1 TTTATTAGCATAATATACTTAACA
*
57218669 TTTATTAGCATAATATACTTGACA
1 TTTATTAGCATAATATACTTAACA
*
57218693 TTAATTAG
1 TTTATTAG
57218701 AATTAGGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (24 bp):
TTTATTAGCATAATATACTTAACA
Found at i:57222329 original size:24 final size:24
Alignment explanation
Indices: 57222301--57222363 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
57222291 TTTCTAGAAG
* **
57222301 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAACATAATAT
57222325 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATTAACATAATAT
* *
57222349 ATTTGGCATTGATTA
1 ATTTAGCATTTATTA
57222364 GAATTAAGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49
Consensus pattern (24 bp):
ATTTAGCATTTATTAACATAATAT
Found at i:57227306 original size:11 final size:11
Alignment explanation
Indices: 57227292--57227316 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
57227282 AGTATATTAA
57227292 ACACCAATTCC
1 ACACCAATTCC
57227303 ACACCAATTCC
1 ACACCAATTCC
57227314 ACA
1 ACA
57227317 ATTAACAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (11 bp):
ACACCAATTCC
Found at i:57229051 original size:13 final size:13
Alignment explanation
Indices: 57229033--57229076 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
57229023 ATCGAAAAAA
57229033 GAAAAAATAAAGT
1 GAAAAAATAAAGT
**
57229046 G-AAAAA-AATTT
1 GAAAAAATAAAGT
57229057 GAAAAAATAAAGT
1 GAAAAAATAAAGT
57229070 GAAAAAA
1 GAAAAAA
57229077 AATTTGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 4 0.16
12 10 0.40
13 11 0.44
ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16
Consensus pattern (13 bp):
GAAAAAATAAAGT
Found at i:57229065 original size:24 final size:25
Alignment explanation
Indices: 57229033--57229088 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
57229023 ATCGAAAAAA
57229033 GAAAAAATAAAGTG-AAAAAAATTT
1 GAAAAAATAAAGTGAAAAAAAATTT
57229057 GAAAAAATAAAGTGAAAAAAAATTT
1 GAAAAAATAAAGTGAAAAAAAATTT
57229082 GAAAAAA
1 GAAAAAA
57229089 AAACGACAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (25 bp):
GAAAAAATAAAGTGAAAAAAAATTT
Found at i:57229086 original size:11 final size:12
Alignment explanation
Indices: 57229047--57229090 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
57229037 AAATAAAGTG
57229047 AAAAAAATTTGA
1 AAAAAAATTTGA
**
57229059 AAAAATAAAGTGA
1 AAAAA-AATTTGA
57229072 AAAAAAATTTGA
1 AAAAAAATTTGA
57229084 AAAAAAA
1 AAAAAAA
57229091 ACGACAACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (12 bp):
AAAAAAATTTGA
Found at i:57229087 original size:13 final size:13
Alignment explanation
Indices: 57229047--57229091 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
57229037 AAATAAAGTG
57229047 AAAAAAATTTGAA
1 AAAAAAATTTGAA
*
57229060 AAAATAAA-GTG-A
1 AAAA-AAATTTGAA
57229072 AAAAAAATTTGAA
1 AAAAAAATTTGAA
57229085 AAAAAAA
1 AAAAAAA
57229092 CGACAACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 3 0.11
12 7 0.26
13 14 0.52
14 3 0.11
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
AAAAAAATTTGAA
Found at i:57230906 original size:40 final size:40
Alignment explanation
Indices: 57230860--57231092 Score: 272
Period size: 40 Copynumber: 5.8 Consensus size: 40
57230850 TATAACCACA
* * *
57230860 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT
* * *
57230900 CGCACAAATGCCTTCGGGTCTTAGCCCGGACATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT
* * *
57230940 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACT
* * * *
57230980 AGCACAATTGCCTTCGGGTCTTAACCTGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT
* * *
57231020 AGCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACT
* *
57231060 AGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
57231093 CATTCAAATG
Statistics
Matches: 164, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.02
40 153 0.93
41 7 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT
Found at i:57230968 original size:80 final size:80
Alignment explanation
Indices: 57230860--57231089 Score: 300
Period size: 80 Copynumber: 2.9 Consensus size: 80
57230850 TATAACCACA
* * * * * *
57230860 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAG
*
57230924 CCCGGACATATCAACT
65 CCCGGACATAGCAACT
* * *
57230940 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAAC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* **
57231005 CTGGGTATAGCAACT
66 CCGGACATAGCAACT
* * *
57231020 AGCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57231085 CCGGA
66 CCGGA
57231090 TATCATTCAA
Statistics
Matches: 128, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 125 0.98
81 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
CCGGACATAGCAACT
Found at i:57231073 original size:120 final size:120
Alignment explanation
Indices: 57230860--57231091 Score: 376
Period size: 120 Copynumber: 1.9 Consensus size: 120
57230850 TATAACCACA
*
57230860 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57230925 CCGGACATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
66 CCGGAAAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAAAATCACT
* *
57230980 AGCACAATTGCCTTCGGGTCTTAACCTGGGTATAGCAACTAGCACAAATGCCTTTGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTCTTAGC
*
57231045 CCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
66 CCGGA-AAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
57231092 TCATTCAAAT
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 99 0.96
121 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTCTTAGC
CCGGAAAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAAAATCACT
Found at i:57238955 original size:39 final size:40
Alignment explanation
Indices: 57238868--57239096 Score: 304
Period size: 39 Copynumber: 5.8 Consensus size: 40
57238858 ATAACCACAA
* * * *
57238868 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
57238908 GCACAAATGCCTTCGGGTCTTAGCCC-GATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
57238947 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
57238986 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
57239025 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
57239065 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
57239097 CATTCAAATG
Statistics
Matches: 166, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
38 4 0.02
39 96 0.58
40 63 0.38
41 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:57242277 original size:28 final size:28
Alignment explanation
Indices: 57242245--57242372 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
57242235 ATAGTAAGTC
*
57242245 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
57242273 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
57242302 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
57242330 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
57242359 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57242373 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:57242335 original size:57 final size:57
Alignment explanation
Indices: 57242244--57242372 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
57242234 TATAGTAAGT
*
57242244 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
57242301 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
57242358 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
57242373 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:57250324 original size:29 final size:29
Alignment explanation
Indices: 57250267--57250423 Score: 212
Period size: 29 Copynumber: 5.5 Consensus size: 29
57250257 ATAGTAAGTC
* *
57250267 CGCACATTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
57250295 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
57250324 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
57250353 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
57250381 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
57250410 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57250424 CAATCTCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
28 38 0.33
29 76 0.66
30 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:57250375 original size:57 final size:58
Alignment explanation
Indices: 57250267--57250423 Score: 212
Period size: 57 Copynumber: 2.7 Consensus size: 58
57250257 ATAGTAAGTC
* *
57250267 CGCACATTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
57250324 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
57250381 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
57250424 CAATCTCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 59 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:57254235 original size:29 final size:28
Alignment explanation
Indices: 57254198--57254262 Score: 103
Period size: 29 Copynumber: 2.3 Consensus size: 28
57254188 TAAGATGTTC
*
57254198 ACCACAAAGGTGTCTTTAAACAGAGGTTT
1 ACCACAAAGGTGTCCTTAAACAGAGG-TT
*
57254227 GCCACAAAGGTGTCCTTAAACAGAGGTT
1 ACCACAAAGGTGTCCTTAAACAGAGGTT
57254255 ACCACAAA
1 ACCACAAA
57254263 AACTTACCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 9 0.27
29 24 0.73
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (28 bp):
ACCACAAAGGTGTCCTTAAACAGAGGTT
Found at i:57257429 original size:46 final size:46
Alignment explanation
Indices: 57257311--57257433 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 46
57257301 ATATGTGTAC
* * *
57257311 TAGTCTAAGACATATCTGGGACATGCATCGGCCATGAGATATTTAAGC
1 TAGTCTAAGACATGTCTGGGACATGCATCGGCCATGAGACA--TAAGA
* * *
57257359 CAGTTTAAGACATGTCTGGTACATGCATCGG-CATTGAGACA-AGAGA
1 TAGTCTAAGACATGTCTGGGACATGCATCGGCCA-TGAGACATA-AGA
*
57257405 TAGTGTAAGACATGTCTGGGACATGCATC
1 TAGTCTAAGACATGTCTGGGACATGCATC
57257434 AGCCTCGCGA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.02
46 28 0.44
47 2 0.03
48 33 0.52
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (46 bp):
TAGTCTAAGACATGTCTGGGACATGCATCGGCCATGAGACATAAGA
Found at i:57264230 original size:39 final size:39
Alignment explanation
Indices: 57264185--57264266 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
57264175 AAGCAAGGCA
57264185 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* * *
57264224 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
57264263 CTGG
1 CTGG
57264267 TAACATAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:57268831 original size:47 final size:47
Alignment explanation
Indices: 57268778--57269224 Score: 696
Period size: 47 Copynumber: 9.5 Consensus size: 47
57268768 ATTCAGCCAA
* *
57268778 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGC
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
57268825 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
57268872 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
57268919 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
57268968 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
57269015 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
57269062 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
57269109 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
57269156 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
57269203 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
57269225 TCCCGAAGGG
Statistics
Matches: 373, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 328 0.88
49 45 0.12
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:57269101 original size:190 final size:188
Alignment explanation
Indices: 57268778--57269224 Score: 714
Period size: 190 Copynumber: 2.4 Consensus size: 188
57268768 ATTCAGCCAA
* * *
57268778 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGCGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
57268843 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
57268908 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
131 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
57268968 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
57269033 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
* *
57269098 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
131 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * * *
57269156 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
57269221 TAAG
66 TAAG
57269225 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 20, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
188 96 0.41
190 141 0.59
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (188 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:57269398 original size:36 final size:37
Alignment explanation
Indices: 57269343--57269420 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
57269333 CCGAGCTCTA
* *
57269343 AAGACCCGATGACTACGTGTGG-GAATTTTGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
57269379 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
57269416 AAGAC
1 AAGAC
57269421 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:57274973 original size:39 final size:39
Alignment explanation
Indices: 57274928--57275048 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
57274918 AAGAAAGGCA
*
57274928 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
57274967 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
57275006 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
57275045 CTGG
1 CTGG
57275049 TAACATAATT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:57279494 original size:47 final size:47
Alignment explanation
Indices: 57279440--57280177 Score: 1296
Period size: 47 Copynumber: 15.6 Consensus size: 47
57279430 TATTTGAATA
57279440 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
57279487 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57279534 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57279581 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57279628 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57279675 AATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57279722 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57279769 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57279816 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
57279865 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
57279914 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57279963 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57280010 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57280057 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
57280104 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
57280151 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
57280178 TCCCGAAGGG
Statistics
Matches: 665, Mismatches: 22, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 526 0.79
49 136 0.20
51 3 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:57283066 original size:48 final size:46
Alignment explanation
Indices: 57282959--57283170 Score: 153
Period size: 46 Copynumber: 4.5 Consensus size: 46
57282949 TATGTGTGCT
* * *
57282959 AGTGTAAGACATGTCTTGGACATGCATCAGCCAC-A-ACATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAT-A-AGCC
*
57283005 AATGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA--TAAGCC
* * * ** * * * * *
57283053 AGTGTAAGACATGTATGGTACATACATTGGCATTGAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA-TATAAGCC
* * * *
57283099 AGTGTAAGACATGTCTGGGACATGTATC-GACCTTGCGATATACAACC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCTCGAGATATA-AGCC
*
57283146 TAGTGTAAGACCTGTCTGGGACATG
1 -AGTGTAAGACATGTCTGGGACATG
57283171 GCGTCAGCTT
Statistics
Matches: 130, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
45 2 0.02
46 63 0.48
47 3 0.02
48 59 0.45
49 2 0.02
50 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAGCC
Found at i:57283262 original size:49 final size:49
Alignment explanation
Indices: 57283190--57283312 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
57283180 TGTTGTGTGT
* * *
57283190 CAGTGTAAGACTTATCTGGGACATGGCATCGACAC-CAATAGATGAGAA-C
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGAC-CTCAATAGATGA-AAGC
* * * *
57283239 CAGTGTAAGACCTGTTTAGGACATGGCATCGGCCTCACTATATGAAAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACCTCAATAGATGAAAGC
57283288 CAGTGTAAGACCATGTTTGGGACAT
1 CAGTGTAAGACC-TGTTTGGGACAT
57283313 AGTGTCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
48 3 0.05
49 49 0.78
50 11 0.17
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACCTCAATAGATGAAAGC
Found at i:57284698 original size:14 final size:14
Alignment explanation
Indices: 57284681--57284709 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57284671 GACATCGGAA
57284681 TAATTGTATGCATG
1 TAATTGTATGCATG
57284695 TAATTGTATGCATG
1 TAATTGTATGCATG
57284709 T
1 T
57284710 GATTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (14 bp):
TAATTGTATGCATG
Found at i:57292694 original size:14 final size:14
Alignment explanation
Indices: 57292677--57292752 Score: 52
Period size: 14 Copynumber: 5.3 Consensus size: 14
57292667 CTCACTTTCT
*
57292677 TTTTCTTTTTCATCT
1 TTTTCTTTTTC-TCA
57292692 TTTTC-TTTTCTCA
1 TTTTCTTTTTCTCA
57292705 TTTTCTTTTCACTCTC-
1 TTTTCTTTT---TCTCA
*
57292721 TTTTGCTATTTTTTC-
1 TTTT-CT-TTTTCTCA
57292736 -TTTCTTTTTCTCA
1 TTTTCTTTTTCTCA
57292749 TTTT
1 TTTT
57292753 TTTGTCTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 17
0.71 0.04 0.24
Matches are distributed among these distances:
12 6 0.12
13 9 0.18
14 14 0.28
15 8 0.16
16 4 0.08
17 6 0.12
18 3 0.06
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71
Consensus pattern (14 bp):
TTTTCTTTTTCTCA
Found at i:57292694 original size:15 final size:14
Alignment explanation
Indices: 57292674--57292753 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 14
57292664 TTTCTCACTT
57292674 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTC
57292688 ATCTTTTTC-TTTTC
1 -TCTTTTTCTTTTTC
*
57292702 TCATTTTCTTTTCACTC
1 TCTTTTTCTTTT---TC
*
57292719 TCTTTTGCTATTTT-
1 TCTTTTTCT-TTTTC
*
57292733 T-TCTTTCTTTTTC
1 TCTTTTTCTTTTTC
57292746 TCATTTTT
1 TC-TTTTT
57292754 TTGTCTTTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
12 4 0.08
13 13 0.25
14 9 0.18
15 13 0.25
17 9 0.18
18 3 0.06
ACGTcount: A:0.06, C:0.21, G:0.01, T:0.71
Consensus pattern (14 bp):
TCTTTTTCTTTTTC
Found at i:57292705 original size:16 final size:15
Alignment explanation
Indices: 57292674--57292713 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
57292664 TTTCTCACTT
57292674 TCTTTTTCTTTTTCA
1 TCTTTTTCTTTTTCA
57292689 TCTTTTTC-TTTTC-
1 TCTTTTTCTTTTTCA
*
57292702 TCATTTTCTTTT
1 TCTTTTTCTTTT
57292714 CACTCTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 8 0.35
15 8 0.35
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (15 bp):
TCTTTTTCTTTTTCA
Found at i:57292723 original size:45 final size:44
Alignment explanation
Indices: 57292668--57292752 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 44
57292658 ACTCATTTTC
* * *
57292668 TCACTTTCTTTTTCT-TTTTCATCTTTTTCTTTTCTCATTTTCTTT
1 TCACTCTCTTTTGCTATTTT-ATCTTTCT-TTTTCTCATTTTCTTT
*
57292713 TCACTCTCTTTTGCTATTTTTTCTTTCTTTTTCTCATTTT
1 TCACTCTCTTTTGCTATTTTATCTTTCTTTTTCTCATTTT
57292753 TTTGTCTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
44 12 0.34
45 19 0.54
46 4 0.11
ACGTcount: A:0.07, C:0.22, G:0.01, T:0.69
Consensus pattern (44 bp):
TCACTCTCTTTTGCTATTTTATCTTTCTTTTTCTCATTTTCTTT
Found at i:57292760 original size:19 final size:19
Alignment explanation
Indices: 57292719--57292761 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
57292709 CTTTTCACTC
*
57292719 TCTTTTGCTATTTTTTCTT
1 TCTTTTGCTATTTTTTCTG
*
57292738 TCTTTTTCTCATTTTTT-TG
1 TCTTTTGCT-ATTTTTTCTG
57292757 TCTTT
1 TCTTT
57292762 CACTTTTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74
Consensus pattern (19 bp):
TCTTTTGCTATTTTTTCTG
Found at i:57292768 original size:44 final size:43
Alignment explanation
Indices: 57292693--57292793 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 43
57292683 TTTTCATCTT
* *
57292693 TTTCTTTTCTCATTTTCTTTTCACTCTCTTTTGCTATT-TTTTC
1 TTTCTTTTCTCATTTTCTTTTCACTCACTTTTAC-ATTCTTTTC
**
57292736 TTTCTTTTTCTCATTTT-TTTGTCTTTCACTTTTACATTCTTTTC
1 TTTC-TTTTCTCATTTTCTTT-TCACTCACTTTTACATTCTTTTC
*
57292780 TTT-TTCTCTCATTT
1 TTTCTTTTCTCATTT
57292794 GTTCTATAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
42 10 0.20
43 10 0.20
44 30 0.60
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.68
Consensus pattern (43 bp):
TTTCTTTTCTCATTTTCTTTTCACTCACTTTTACATTCTTTTC
Found at i:57294497 original size:43 final size:45
Alignment explanation
Indices: 57294444--57294577 Score: 146
Period size: 43 Copynumber: 2.9 Consensus size: 45
57294434 GAGATATGTG
* * *
57294444 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGTTGCG-A-
1 GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCGTAT
* * *
57294487 GCATCTGAGCTCGTTGAGTGGTTTGAGTTCATGATGGATGCGATTCAT
1 GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCG--T-AT
57294535 GTAACATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATG
1 G---CATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATG
57294578 TGTTACATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
43 36 0.49
47 1 0.01
48 1 0.01
51 36 0.49
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.32
Consensus pattern (45 bp):
GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCGTAT
Found at i:57301582 original size:62 final size:63
Alignment explanation
Indices: 57301404--57301582 Score: 186
Period size: 62 Copynumber: 2.8 Consensus size: 63
57301394 TAGTTCGGCT
* * * *
57301404 CTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGC
1 CTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCGTAGC
* * * *
57301466 TCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCGTA
1 -CTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
57301531 G-
62 GC
* *
57301532 CTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 CTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT
57301583 CATAATGTCT
Statistics
Matches: 96, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
62 29 0.30
63 15 0.16
65 17 0.18
66 23 0.24
67 10 0.10
68 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (63 bp):
CTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTAGC
Found at i:57309532 original size:47 final size:47
Alignment explanation
Indices: 57309457--57309672 Score: 260
Period size: 47 Copynumber: 4.6 Consensus size: 47
57309447 ATATTTGAGT
*
57309457 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
* * * * * *
57309504 TCCGAGCTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCAA--ATG--
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
* * *
57309550 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
* *
57309597 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
*
57309644 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTC
57309673 ACTTATGGGC
Statistics
Matches: 139, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
43 6 0.04
45 3 0.02
46 25 0.18
47 95 0.68
48 4 0.03
50 6 0.04
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
Found at i:57319444 original size:12 final size:12
Alignment explanation
Indices: 57319427--57319460 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
57319417 GGTGCTTGAG
57319427 AAGCCTGGGTTC
1 AAGCCTGGGTTC
57319439 AAGCCTGGGTTC
1 AAGCCTGGGTTC
*
57319451 AAGTCTGGGT
1 AAGCCTGGGT
57319461 GTTTGGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.21, G:0.35, T:0.26
Consensus pattern (12 bp):
AAGCCTGGGTTC
Found at i:57321501 original size:27 final size:26
Alignment explanation
Indices: 57321465--57321610 Score: 114
Period size: 27 Copynumber: 5.4 Consensus size: 26
57321455 AGGCCCCAAT
57321465 TTGTAAAATTACCAAAATACCCTCGAA
1 TTGTAAAATTA-CAAAATACCCTCGAA
* * * * *
57321492 TTGTAAAATTATAGAAATGCCTTTGAT
1 TTGTAAAATTACA-AAATACCCTCGAA
** *
57321519 TTGTAAAATTATTGAAATACCCTCAAA
1 TTGTAAAATTA-CAAAATACCCTCGAA
*
57321546 TTGTAAAATTACAGAAATACCC-CTGAT
1 TTGTAAAATTACA-AAATACCCTC-GAA
* * *
57321573 TTGTAAAATTACCAAAATATCCTTGTA
1 TTGTAAAATTA-CAAAATACCCTCGAA
*
57321600 GTGTAAAATTA
1 TTGTAAAATTA
57321611 TTGAAATACC
Statistics
Matches: 93, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
26 2 0.02
27 88 0.95
28 3 0.03
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (26 bp):
TTGTAAAATTACAAAATACCCTCGAA
Found at i:57321605 original size:54 final size:54
Alignment explanation
Indices: 57321463--57321621 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 54
57321453 TAAGGCCCCA
* **
57321463 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATGCCTTTG
1 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCCCTG
*** * *
57321517 ATTTGTAAAATTATTGAAATACCCTCAAATTGTAAAATTACAGAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCCCTG
* * * * *
57321571 ATTTGTAAAATTACCAAAATATCCTTGTAGTGTAAAATTATTGAAATACCC
1 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCC
57321622 TTGTAGGGTA
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (54 bp):
ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCCCTG
Found at i:57321617 original size:27 final size:27
Alignment explanation
Indices: 57321466--57321635 Score: 103
Period size: 27 Copynumber: 6.3 Consensus size: 27
57321456 GGCCCCAATT
** * * *
57321466 TGTAAAATTACCAAAATACCCTCGAAT
1 TGTAAAATTACTGAAATACCCTTGTAG
* * *
57321493 TGTAAAATTA-TAGAAATGCCTTTG-ATT
1 TGTAAAATTACT-GAAATACCCTTGTA-G
* *** *
57321520 TGTAAAATTATTGAAATACCCTCAAAT
1 TGTAAAATTACTGAAATACCCTTGTAG
* * *
57321547 TGTAAAATTACAGAAATACCCCTG-ATT
1 TGTAAAATTACTGAAATACCCTTGTA-G
** *
57321574 TGTAAAATTACCAAAATATCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
*
57321601 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
*
57321628 GGTAAAAT
1 TGTAAAAT
57321636 GATTATTTTG
Statistics
Matches: 113, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
26 2 0.02
27 108 0.96
28 3 0.03
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTTGTAG
Found at i:57322027 original size:27 final size:27
Alignment explanation
Indices: 57321997--57322081 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
57321987 GTGCTAATTG
*
57321997 TATTTACTTGTGGCTATGTGTCTATCA
1 TATTTACTTGTGGCTATGTGTCGATCA
* * *
57322024 TATTTA-TTGATGACTCTGTGTCGAACA
1 TATTTACTTG-TGGCTATGTGTCGATCA
*** *
57322051 TATTTACCCATGGCTGTGTGTCGATCA
1 TATTTACTTGTGGCTATGTGTCGATCA
57322078 TATT
1 TATT
57322082 ACAACTACTA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (27 bp):
TATTTACTTGTGGCTATGTGTCGATCA
Found at i:57322115 original size:32 final size:32
Alignment explanation
Indices: 57322060--57322131 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
57322050 ATATTTACCC
* *
57322060 ATGGCTGTGTGTCGATCATATTACAACTACTA
1 ATGGCTGTGTGCCGATCAAATTACAACTACTA
* * **
57322092 ATGGCTTTGTGCCTATCAAATTACTGCTACTA
1 ATGGCTGTGTGCCGATCAAATTACAACTACTA
57322124 ATGGCTGT
1 ATGGCTGT
57322132 AAGTCATGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (32 bp):
ATGGCTGTGTGCCGATCAAATTACAACTACTA
Found at i:57322396 original size:28 final size:28
Alignment explanation
Indices: 57322364--57322419 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
57322354 CTGATTCTGA
* * *
57322364 TACTATATTGGGCTTAGGCCCACACTGT
1 TACTACATTGGGCTAAGACCCACACTGT
57322392 TACTACATTGGGCTAAGACCCACACTGT
1 TACTACATTGGGCTAAGACCCACACTGT
57322420 GCTGTTACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (28 bp):
TACTACATTGGGCTAAGACCCACACTGT
Found at i:57335963 original size:49 final size:50
Alignment explanation
Indices: 57335898--57336142 Score: 208
Period size: 49 Copynumber: 4.9 Consensus size: 50
57335888 TAGACAAGGC
* * *
57335898 TATCTAGTACACATAGTAGCCTACACTTAGTACTACACATGCGA-CAAAT
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
* * * *
57335947 TATCCAGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAAC
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
* * * * * * * * *
57335997 CAT-CTGATTCACGTAGTAGCTTGCACTTAGTACTACGCACGTGATCGAAGT
1 TATCCAG-TACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAAAT
*** ** * *
57336048 TATTGGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
* * * *
57336097 TATCCGGTACACGTAGCAGCCTGCACTTAGTACTACACACGTGACC
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
57336143 TCACAATAGA
Statistics
Matches: 153, Mismatches: 39, Indels: 8
0.76 0.19 0.04
Matches are distributed among these distances:
49 82 0.54
50 38 0.25
51 32 0.21
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT
Found at i:57336138 original size:100 final size:101
Alignment explanation
Indices: 57335959--57336140 Score: 249
Period size: 100 Copynumber: 1.8 Consensus size: 101
57335949 TCCAGTACAC
** * * * *
57335959 ATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATTCACGTAGTAGCTTGCACT
1 ATAGTAGCCTACACTTAGTACTACACACGCAACCTAACCATCCGATACACGTAGCAGCCTGCACT
*
57336024 TAGTACTACGCACGTGATCGAAGTTATTGGGTACGT
66 TAGTACTACACACGTGATCGAAGTTATTGGGTACGT
* * ** *
57336060 ATAGTAGCCTGCACTTAGTACTACACATGCAACC-AATTATCCGGTACACGTAGCAGCCTGCACT
1 ATAGTAGCCTACACTTAGTACTACACACGCAACCTAACCATCCGATACACGTAGCAGCCTGCACT
57336124 TAGTACTACACACGTGA
66 TAGTACTACACACGTGA
57336141 CCTCACAATA
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
100 39 0.57
101 30 0.43
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
ATAGTAGCCTACACTTAGTACTACACACGCAACCTAACCATCCGATACACGTAGCAGCCTGCACT
TAGTACTACACACGTGATCGAAGTTATTGGGTACGT
Found at i:57342011 original size:49 final size:49
Alignment explanation
Indices: 57341829--57342027 Score: 236
Period size: 50 Copynumber: 4.0 Consensus size: 49
57341819 GTAGCCTGCA
* * *
57341829 GACCAATTATCCGGTACACGTAGTAGCCTGGATTTAGTACTACACACGT
1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
** * * * *
57341878 GACCTAACCATCTGATACACGTAGCAGCCTGCACTTAGTACTACACACGT
1 GACC-AATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
* ** * * *
57341928 GATCGAAGTTATTGGGTACACATAGTAGCCTGCACTTAGTAATACACATGC
1 GA-CCAA-TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
57341979 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
57342028 AACCTCACAA
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 42 0.34
50 45 0.37
51 36 0.29
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
Found at i:57346096 original size:55 final size:56
Alignment explanation
Indices: 57346009--57346144 Score: 211
Period size: 55 Copynumber: 2.4 Consensus size: 56
57345999 GACCATGGCA
* *
57346009 TCGATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCAATATGTTATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATT
* *
57346065 TTGATATATGTGTG-GAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATT
* *
57346120 TCGTTATATGTGTGCGAGTAGGACC
1 TCGATATATGTGTGCGAGTAAGACC
57346145 TTGTTTGGGA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
55 50 0.69
56 22 0.31
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATT
Found at i:57347315 original size:46 final size:46
Alignment explanation
Indices: 57347261--57347624 Score: 529
Period size: 46 Copynumber: 8.0 Consensus size: 46
57347251 GCTCTCTAAA
57347261 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
57347307 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
57347353 ATGAAATGTGTAAGACAATGGTT-AAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
57347398 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
57347443 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
57347489 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** *
57347535 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
57347581 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
57347625 TCAAAGATAA
Statistics
Matches: 291, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
44 13 0.04
45 54 0.19
46 223 0.77
47 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:57350463 original size:27 final size:28
Alignment explanation
Indices: 57350424--57350481 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
57350414 CATCACACAG
57350424 GGGCAAAACAGTCATCTTACCATATA-A
1 GGGCAAAACAGTCATCTTACCATATATA
* * *
57350451 GGGCAAAATAGTCATTTTATCATATATA
1 GGGCAAAACAGTCATCTTACCATATATA
57350479 GGG
1 GGG
57350482 GATCTAGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (28 bp):
GGGCAAAACAGTCATCTTACCATATATA
Found at i:57354258 original size:42 final size:42
Alignment explanation
Indices: 57354197--57354308 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 42
57354187 GACTTCTATT
*
57354197 TTATGTGTAAGACCATGTCTGGGACGTCGACATCG-TATTTGA
1 TTATGTGTAAGACCCTGTCTGGGACGT-GACATCGATATTTGA
* * * *
57354239 TTTTGTGTAAGACCCTGTCTAGGACAGTGGCATCGATGTTTGA
1 TTATGTGTAAGACCCTGTCTGGGAC-GTGACATCGATATTTGA
**
57354282 TTACATGTAAGACCAC-GTCTGGGACGT
1 TTATGTGTAAGACC-CTGTCTGGGACGT
57354309 TGGCATTGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 30 0.52
43 27 0.47
44 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TTATGTGTAAGACCCTGTCTGGGACGTGACATCGATATTTGA
Found at i:57354313 original size:43 final size:42
Alignment explanation
Indices: 57354202--57354314 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 42
57354192 CTATTTTATG
* * * ***
57354202 TGTAAGACCATGTCTGGGACGTCGACATCGTATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
* *
57354244 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTACA
57354287 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
57354315 TGTAAATGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
42 24 0.42
43 32 0.56
44 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:57355000 original size:66 final size:66
Alignment explanation
Indices: 57354924--57355056 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
57354914 GAATGATGTA
*
57354924 TTGATCATATGTTTAGGTATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT
1 TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT
57354989 T
66 T
57354990 TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT
1 TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT
57355055 T
66 T
57355056 T
1 T
57355057 GAAATGATTG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48
Consensus pattern (66 bp):
TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT
T
Found at i:57355972 original size:38 final size:38
Alignment explanation
Indices: 57355921--57356035 Score: 194
Period size: 38 Copynumber: 3.0 Consensus size: 38
57355911 CTCCAAAATG
57355921 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
*
57355959 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGTTT
1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
* * *
57355997 TCGTCTTCCATATTCTTGACACTTAGGTTTGTTGGCTT
1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
57356035 T
1 T
57356036 GGCACTACCA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 72 1.00
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (38 bp):
TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
Found at i:57359466 original size:46 final size:46
Alignment explanation
Indices: 57359416--57359591 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
57359406 TGTTTGGGCA
*
57359416 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *** * ** ** *
57359462 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* **
57359509 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
57359555 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57359592 GCAGGTTACA
Statistics
Matches: 104, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:57359571 original size:93 final size:93
Alignment explanation
Indices: 57359412--57359583 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
57359402 AGGATGTTTG
* * *
57359412 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
57359477 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
57359505 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
57359570 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57359584 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:57363088 original size:56 final size:56
Alignment explanation
Indices: 57362924--57363090 Score: 244
Period size: 56 Copynumber: 3.0 Consensus size: 56
57362914 TCTTACATGT
* * * * *
57362924 AATCACATATCGATGCCAATGTACTAGATGTGGTCTTACTCGCACACATATACCAG
1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG
* * *
57362980 AATCATATATCAATGCCAACGTATTAAATGTTGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG
* *
57363036 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACATATATCG
1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCG
57363091 ATGCCATGGT
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 98 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG
Found at i:57381712 original size:49 final size:49
Alignment explanation
Indices: 57381527--57381725 Score: 245
Period size: 50 Copynumber: 4.0 Consensus size: 49
57381517 GTAGCCTGCA
* * *
57381527 GACCAATTATCCGGTACACGTAGTAGCCTGGATTTAGTACTACACACGT
1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
** * * *
57381576 GACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
1 GACC-AATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
* ** * * *
57381626 GATCGAAGTTATTGGGTACACATAGTAGCCTGCACTTAGTAATACACATGC
1 GA-CCAA-TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
57381677 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
57381726 AACCTCACAA
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 42 0.34
50 46 0.37
51 37 0.30
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
Found at i:57385807 original size:55 final size:56
Alignment explanation
Indices: 57385722--57385854 Score: 205
Period size: 55 Copynumber: 2.4 Consensus size: 56
57385712 CATGGCATCA
* * * *
57385722 ATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCGATATGTTATTTTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG
57385778 ATATATGTGTG-GAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG
* *
57385833 TTATATGTGTGCGAGTAGGACC
1 ATATATGTGTGCGAGTAAGACC
57385855 TTGTTTGGGA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
55 50 0.71
56 20 0.29
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG
Found at i:57390504 original size:43 final size:42
Alignment explanation
Indices: 57390456--57390546 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 42
57390446 CGTATCCATC
* * *
57390456 ATGAACTTGGACCACTCAACGAGCTC-GAATGCTCACATCTATA
1 ATGAACTCGGACCACTCAACAAGCTCAG-ATGC-CACATATATA
*
57390499 ATGAACTCGGACCACTCAACAAGCTCAGATGCCACATATATC
1 ATGAACTCGGACCACTCAACAAGCTCAGATGCCACATATATA
57390541 ATGAAC
1 ATGAAC
57390547 CCAGACCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 14 0.33
43 28 0.65
44 1 0.02
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (42 bp):
ATGAACTCGGACCACTCAACAAGCTCAGATGCCACATATATA
Found at i:57390554 original size:42 final size:43
Alignment explanation
Indices: 57390465--57390559 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
57390455 CATGAACTTG
* * * *
57390465 GACCACTCAACGAGCTCGAATGCTCACATCTATAATGAACTCG
1 GACCACTCAACAAGCTCGAATGCTCACATATATAATGAACCCA
*
57390508 GACCACTCAACAAGCTC-AGATGC-CACATATATCATGAACCCA
1 GACCACTCAACAAGCTCGA-ATGCTCACATATATAATGAACCCA
*
57390550 GACCATTCAA
1 GACCACTCAA
57390560 TGAGTTCAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.36, C:0.32, G:0.14, T:0.19
Consensus pattern (43 bp):
GACCACTCAACAAGCTCGAATGCTCACATATATAATGAACCCA
Found at i:57399226 original size:49 final size:48
Alignment explanation
Indices: 57399154--57399339 Score: 219
Period size: 49 Copynumber: 3.8 Consensus size: 48
57399144 TGAGGTCACG
*
57399154 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-AATTGGTCGCA
* * ** * * *
57399203 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-AAA-T-TGGTCGCA
* *
57399254 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAATATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAA-ATTGGTCGCA
* *
57399303 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
57399340 TAGCTTCGGC
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 72 0.63
50 5 0.04
51 37 0.32
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAATTGGTCGCA
Found at i:57399322 original size:100 final size:100
Alignment explanation
Indices: 57399149--57399335 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
57399139 TATTGTGAGG
* *
57399149 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCATGTGTAGTACT
57399214 AAGTGCAGGCTACTATGCGTACTTGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACTTGAAAACTGTGA
*
57399249 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAT-ATTGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACC-GAATAATTGGTCGCATGTGTAGTAC
57399313 TAAGTGCAGGCTACTATGCGTAC
65 TAAGTGCAGGCTACTATGCGTAC
57399336 CAGATAGCTT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
100 80 0.96
101 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTTGAAAACTGTGA
Found at i:57404690 original size:40 final size:41
Alignment explanation
Indices: 57404635--57404731 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
57404625 TGACTATGCT
*
57404635 TGGCACTAAGTGTGCG-GTTTAATATAGCTCCGGCTACA-AA
1 TGGCACTAAGTGTGCGAGTTGAA-ATAGCTCCGGCTACATAA
* * *
57404675 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTATATAA
1 TGGCACTAAGTGTGCGAGTTGAAATAGCTCCGGCTACATAA
*
57404716 -GGAACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
57404732 TACCAATTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 44 0.88
41 6 0.12
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTGAAATAGCTCCGGCTACATAA
Found at i:57406234 original size:13 final size:13
Alignment explanation
Indices: 57406216--57406241 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57406206 ACAAAAAATC
57406216 AGCACTGATTGAG
1 AGCACTGATTGAG
57406229 AGCACTGATTGAG
1 AGCACTGATTGAG
57406242 TTTTCAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
AGCACTGATTGAG
Found at i:57412733 original size:27 final size:27
Alignment explanation
Indices: 57412703--57412764 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
57412693 TATACATCAC
57412703 ATAAGGGCAAAACAGTCATCTTACCAT
1 ATAAGGGCAAAACAGTCATCTTACCAT
* * *
57412730 ATAAGGGCAAAATAGTCATTTTATCAT
1 ATAAGGGCAAAACAGTCATCTTACCAT
57412757 ATATAGGG
1 ATA-AGGG
57412765 GGTCTAGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (27 bp):
ATAAGGGCAAAACAGTCATCTTACCAT
Found at i:57414200 original size:27 final size:28
Alignment explanation
Indices: 57414169--57414230 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
57414159 TTAGTTTACC
* *
57414169 AAATTACTGAAA-TACCCTCAAATTGTA
1 AAATTACTCAAAGTACCCTCAAATTATA
* *
57414196 AAATTAC-CAAAGTACCCTCGATTTATA
1 AAATTACTCAAAGTACCCTCAAATTATA
57414223 AAATTACT
1 AAATTACT
57414231 ATTTTACCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (28 bp):
AAATTACTCAAAGTACCCTCAAATTATA
Found at i:57414238 original size:27 final size:27
Alignment explanation
Indices: 57414208--57414364 Score: 170
Period size: 27 Copynumber: 5.8 Consensus size: 27
57414198 ATTACCAAAG
* *
57414208 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
57414235 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
57414262 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
57414289 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* ****
57414316 TACCCTCTATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTGTTT
*
57414343 TACCCTCGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
57414365 CAAAATACCC
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:57414239 original size:54 final size:54
Alignment explanation
Indices: 57414181--57414294 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
57414171 ATTACTGAAA
*
57414181 TACCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT
1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT
* * * **** * * *
57414235 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT
57414289 TACCCT
1 TACCCT
57414295 TGATTTACAG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT
Found at i:57414300 original size:54 final size:54
Alignment explanation
Indices: 57414208--57414365 Score: 199
Period size: 54 Copynumber: 2.9 Consensus size: 54
57414198 ATTACCAAAG
*
57414208 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
57414262 TACCCTCGATTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *** * *
57414316 TACCCTCTATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACC
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACC
57414366 AAAATACCCT
Statistics
Matches: 86, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:57414369 original size:27 final size:27
Alignment explanation
Indices: 57414330--57414562 Score: 231
Period size: 27 Copynumber: 8.7 Consensus size: 27
57414320 CTCTATTTAC
* * **
57414330 AAAATTACTAAAATACCCTCGGTTTAC
1 AAAATTACCAAAATACCCTCAGTTTGT
**
57414357 AAAATTACCAAAATACCCTC-GATCAGT
1 AAAATTACCAAAATACCCTCAG-TTTGT
*
57414384 AAAATTACCAAAATACCCT-AGTCTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
* * **
57414410 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
*** * *
57414437 AAAATTATTGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
57414464 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTC-AGTTTGT
*
57414491 AAAATTACCAAAATACCACT-GGTTTGT
1 AAAATTACCAAAATACC-CTCAGTTTGT
* * *
57414518 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
57414545 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
57414563 CTGATTTACA
Statistics
Matches: 172, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
26 24 0.14
27 147 0.85
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCAGTTTGT
Found at i:57414401 original size:81 final size:80
Alignment explanation
Indices: 57414316--57414588 Score: 302
Period size: 81 Copynumber: 3.4 Consensus size: 80
57414306 ATTACTGTTT
** * *
57414316 TACCCTCTA-TTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGAT
1 TACCC-CTAGTTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAAT
**
57414380 CAGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* ** * ** *
57414397 TA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTATTGAAATACCCTTAATT
1 TACCCCTAGTTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT
57414461 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
** * *
57414477 TACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATT
1 TACCCCTAGTTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATT
57414542 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
*
57414558 TACCCCT-GATTTACAAAGTTAC-AGAAATACC
1 TACCCCTAG-TTTACAAAATTACTA-AAATACC
57414589 TTTGACTTTC
Statistics
Matches: 163, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
79 3 0.02
80 63 0.39
81 96 0.59
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
TACCCCTAGTTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:57414579 original size:27 final size:26
Alignment explanation
Indices: 57414330--57414588 Score: 122
Period size: 27 Copynumber: 9.7 Consensus size: 26
57414320 CTCTATTTAC
* * *
57414330 AAAATTACTAAAATA-CCCTCGGTTT
1 AAAATTACCAAAATACCCCTAGATTT
* *
57414355 ACAAAATTACCAAAATA-CCCTCGATCAGT
1 --AAAATTACCAAAATACCCCTAGAT--TT
57414384 AAAATTACCAAAATA-CCCTAG-TCTGT
1 AAAATTACCAAAATACCCCTAGAT-T-T
* * * * *
57414410 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGATT-T
*** *
57414437 AAAATTATTGAAATACCCTTA-ATTTGT
1 AAAATTACCAAAATACCCCTAGA-TT-T
*
57414464 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGATT-T
* * *
57414491 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGATT-T
* *
57414518 GAAATTACCGAAATA-CCCTCA-ATTTGT
1 AAAATTACCAAAATACCCCT-AGA-TT-T
57414545 AAAATTACCAAAATACCCCT-GATTT
1 AAAATTACCAAAATACCCCTAGATTT
57414570 ACAAAGTTA-CAGAAATACC
1 A-AAA-TTACCA-AAATACC
57414589 TTTGACTTTC
Statistics
Matches: 189, Mismatches: 29, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
25 2 0.01
26 25 0.13
27 156 0.83
28 5 0.03
29 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTAGATTT
Found at i:57414631 original size:28 final size:27
Alignment explanation
Indices: 57414601--57414652 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
57414591 TGACTTTCTA
*
57414601 AAAATTA-TGGAACTACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
57414628 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
57414653 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:57414797 original size:27 final size:27
Alignment explanation
Indices: 57414706--57414797 Score: 109
Period size: 27 Copynumber: 3.4 Consensus size: 27
57414696 ACCCCTATTA
*
57414706 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
57414733 GGTAAAGA-GACCGTAAAGCCTCC-GTAG
1 GGTAAA-ATGACCGTAAAGCC-CCTGTAG
* *
57414760 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
57414787 GGTAAAATGAC
1 GGTAAAATGAC
57414798 GAATATGCCC
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
26 2 0.04
27 51 0.89
28 4 0.07
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:57415145 original size:20 final size:22
Alignment explanation
Indices: 57415107--57415148 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
57415097 TGTGCACGAC
57415107 GAAAGTTGGGCCTCAATGGGCT
1 GAAAGTTGGGCCTCAATGGGCT
57415129 GAAA-TTGGGCC-CAATGGGCT
1 GAAAGTTGGGCCTCAATGGGCT
57415149 TTCGGACCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (22 bp):
GAAAGTTGGGCCTCAATGGGCT
Done.