Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_A13 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 109233746 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32 Warning! 2708888 characters in sequence are not A, C, G, or T File 173 of 332 Found at i:57093522 original size:39 final size:40 Alignment explanation
Indices: 57093270--57093525 Score: 231 Period size: 40 Copynumber: 6.5 Consensus size: 40 57093260 TTGAATGATG * * * * * * 57093270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA 1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTAAA ** * * 57093310 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT 1 TCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAA * * 57093350 TCCGGGCT-AA-GCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA * 57093388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA * 57093428 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA-AA * ** ** * 57093469 -CCGGGCTATGT-CCGAAGGCATTTGAACGAG-TAGCTATA 1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTA-CTAAA * 57093507 TCC-GGTTAAATTCCGAAGG 1 TCCGGGTTAAATCCCGAAGG 57093526 TACGTGATTT Statistics Matches: 185, Mismatches: 22, Indels: 19 0.82 0.10 0.08 Matches are distributed among these distances: 38 41 0.22 39 31 0.17 40 103 0.56 41 10 0.05 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26 Consensus pattern (40 bp): TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:57098215 original size:79 final size:81 Alignment explanation
Indices: 57098079--57098261 Score: 232 Period size: 79 Copynumber: 2.3 Consensus size: 81 57098069 TCGAATGATG * * 57098079 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT 57098143 TGTGCGAGTTACTA-A 66 TGTGCGAGTTACTATA * * * ** 57098158 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA 57098220 TTTGTGCGAGTTACTATA 64 TTTGTGCGAGTTACTATA * * 57098238 ACCGGGCTATGTCCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATT 57098262 TGAACGAGTA Statistics Matches: 90, Mismatches: 9, Indels: 8 0.84 0.08 0.07 Matches are distributed among these distances: 78 1 0.01 79 59 0.66 80 30 0.33 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT TGTGCGAGTTACTATA Found at i:57098277 original size:40 final size:40 Alignment explanation
Indices: 57098080--57098263 Score: 216 Period size: 40 Copynumber: 4.6 Consensus size: 40 57098070 CGAATGATGT * * * * 57098080 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA * * 57098120 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT 1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A * 57098160 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 57098198 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 57098239 CCGGGCTATGTCCCGAAGGCATTTG 1 CCGGGCTAAGTCCCGAAGGCATTTG 57098264 AACGAGTAGC Statistics Matches: 126, Mismatches: 11, Indels: 14 0.83 0.07 0.09 Matches are distributed among these distances: 39 35 0.28 40 81 0.64 41 10 0.08 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA Found at i:57098285 original size:79 final size:79 Alignment explanation
Indices: 57098132--57098296 Score: 210 Period size: 79 Copynumber: 2.1 Consensus size: 79 57098122 GGACTAAGAT * ** 57098132 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA 1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA * 57098197 ATCCGGGTTAAGTC 66 ATCCGGGTTAAATC * * 57098211 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC 1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C * * 57098274 TATATCC-GGTTAAATT 63 TAAATCCGGGTTAAATC 57098290 CCGAAGG 1 CCGAAGG 57098297 TACGTGATTC Statistics Matches: 75, Mismatches: 8, Indels: 6 0.84 0.09 0.07 Matches are distributed among these distances: 78 2 0.03 79 49 0.65 80 24 0.32 ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25 Consensus pattern (79 bp): CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA ATCCGGGTTAAATC Found at i:57106283 original size:79 final size:81 Alignment explanation
Indices: 57106147--57106329 Score: 232 Period size: 79 Copynumber: 2.3 Consensus size: 81 57106137 TCGAATGATG * * 57106147 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT 57106211 TGTGCGAGTTACTA-A 66 TGTGCGAGTTACTATA * * * ** 57106226 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA 57106288 TTTGTGCGAGTTACTATA 64 TTTGTGCGAGTTACTATA * * 57106306 ACCGGGCTATGTCCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATT 57106330 TGAACGAGTA Statistics Matches: 90, Mismatches: 9, Indels: 8 0.84 0.08 0.07 Matches are distributed among these distances: 78 1 0.01 79 59 0.66 80 30 0.33 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT TGTGCGAGTTACTATA Found at i:57106345 original size:40 final size:40 Alignment explanation
Indices: 57106148--57106331 Score: 216 Period size: 40 Copynumber: 4.6 Consensus size: 40 57106138 CGAATGATGT * * * * 57106148 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA * * 57106188 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT 1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A * 57106228 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 57106266 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 57106307 CCGGGCTATGTCCCGAAGGCATTTG 1 CCGGGCTAAGTCCCGAAGGCATTTG 57106332 AACGAGTAGC Statistics Matches: 126, Mismatches: 11, Indels: 14 0.83 0.07 0.09 Matches are distributed among these distances: 39 35 0.28 40 81 0.64 41 10 0.08 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA Found at i:57112243 original size:24 final size:24 Alignment explanation
Indices: 57112211--57112281 Score: 115 Period size: 24 Copynumber: 3.0 Consensus size: 24 57112201 CTGTCAGAAG 57112211 AGGATTTAGGAGTTGATAAGGGAT 1 AGGATTTAGGAGTTGATAAGGGAT * 57112235 AGGATTTAGGAGTTGATAAAGGAT 1 AGGATTTAGGAGTTGATAAGGGAT ** 57112259 AGGATTTAGGAGCAGATAAGGGA 1 AGGATTTAGGAGTTGATAAGGGA 57112282 GGAAATCTAG Statistics Matches: 43, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 43 1.00 ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25 Consensus pattern (24 bp): AGGATTTAGGAGTTGATAAGGGAT Found at i:57112293 original size:48 final size:47 Alignment explanation
Indices: 57112211--57112305 Score: 111 Period size: 48 Copynumber: 2.0 Consensus size: 47 57112201 CTGTCAGAAG ** * * 57112211 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGATAAAGGAT 1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATAAAGGAT * 57112259 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGGA 1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATAAAGGA 57112306 ACAAGAGGTG Statistics Matches: 40, Mismatches: 5, Indels: 4 0.82 0.10 0.08 Matches are distributed among these distances: 46 3 0.08 48 37 0.93 ACGTcount: A:0.37, C:0.04, G:0.36, T:0.23 Consensus pattern (47 bp): AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATAAAGGAT Found at i:57113751 original size:28 final size:27 Alignment explanation
Indices: 57113686--57113770 Score: 111 Period size: 27 Copynumber: 3.1 Consensus size: 27 57113676 AGGAAGCGTC * 57113686 CTGGTGGCTATGCCACAATTATCTG-AT 1 CTGGTGGCTCTGCCAC-ATTATCTGTAT 57113713 CTGGTGGCTCTGCCACGATTATCTGTAT 1 CTGGTGGCTCTGCCAC-ATTATCTGTAT * * 57113741 CTGGTGACTCTGTCACATTATCTGT-T 1 CTGGTGGCTCTGCCACATTATCTGTAT 57113767 CTGG 1 CTGG 57113771 CAGCCATGCT Statistics Matches: 53, Mismatches: 4, Indels: 3 0.88 0.07 0.05 Matches are distributed among these distances: 26 5 0.09 27 32 0.60 28 16 0.30 ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36 Consensus pattern (27 bp): CTGGTGGCTCTGCCACATTATCTGTAT Found at i:57116313 original size:43 final size:43 Alignment explanation
Indices: 57116208--57116329 Score: 126 Period size: 43 Copynumber: 2.9 Consensus size: 43 57116198 ACTTCTGTTT ** * * 57116208 TACATGTAAGATAATGTTTGGGACA-TCGGCATCGTATCTGAT 1 TACATGTAAGACCACGTTTGGGACAGTCGGCATCGTATCTGAC * * * 57116250 TTCATGTAAGACC-CTGTTTGGGACAGT-GGCATCGATGTTTGAC 1 TACATGTAAGACCAC-GTTTGGGACAGTCGGCATCG-TATCTGAC * 57116293 TACATGTAAGACCACGTTTGGGAC-GTCGGCATTGTAT 1 TACATGTAAGACCACGTTTGGGACAGTCGGCATCGTAT 57116330 ATACTTTCTG Statistics Matches: 65, Mismatches: 10, Indels: 10 0.76 0.12 0.12 Matches are distributed among these distances: 42 31 0.48 43 33 0.51 44 1 0.02 ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32 Consensus pattern (43 bp): TACATGTAAGACCACGTTTGGGACAGTCGGCATCGTATCTGAC Found at i:57121421 original size:27 final size:28 Alignment explanation
Indices: 57121361--57121415 Score: 76 Period size: 27 Copynumber: 2.0 Consensus size: 28 57121351 TAAAATAATT * 57121361 AAAATTAAATATGTTAATAATTTAAGTG 1 AAAATTAAATATGTTAATAATTAAAGTG * * 57121389 AAAATTAATTAT-TTTATAATTAAAGTG 1 AAAATTAAATATGTTAATAATTAAAGTG 57121416 TGAATTTGGA Statistics Matches: 24, Mismatches: 3, Indels: 1 0.86 0.11 0.04 Matches are distributed among these distances: 27 13 0.54 28 11 0.46 ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42 Consensus pattern (28 bp): AAAATTAAATATGTTAATAATTAAAGTG Found at i:57124757 original size:25 final size:25 Alignment explanation
Indices: 57124729--57124777 Score: 62 Period size: 25 Copynumber: 2.0 Consensus size: 25 57124719 CTAGAGAACC * * 57124729 AATCATATAACTCATGATAATGATT 1 AATCACATAACTCATCATAATGATT * * 57124754 AATCACATAATTCTTCATAATGAT 1 AATCACATAACTCATCATAATGAT 57124778 AATAATAAAG Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37 Consensus pattern (25 bp): AATCACATAACTCATCATAATGATT Found at i:57139820 original size:28 final size:28 Alignment explanation
Indices: 57139722--57139823 Score: 168 Period size: 28 Copynumber: 3.6 Consensus size: 28 57139712 ATAGTAAGTC * 57139722 CGCACACTTAGTGTTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * 57139750 CGCACACTTAGTGCTTACATAATCAAACT 1 CGCACACTTAGTGC-TATATAATCAAACT 57139779 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * 57139807 TGCACACTTAGTGCTAT 1 CGCACACTTAGTGCTAT 57139824 GCAATTTAAA Statistics Matches: 69, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 28 42 0.61 29 27 0.39 ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:57139842 original size:57 final size:57 Alignment explanation
Indices: 57139724--57139849 Score: 173 Period size: 57 Copynumber: 2.2 Consensus size: 57 57139714 AGTAAGTCCG * * * 57139724 CACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG 1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA * * * * 57139781 CACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACCCA 1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCCA 57139838 CACACTTAGTGC 1 CACACTTAGTGC 57139850 CAATCTCATG Statistics Matches: 61, Mismatches: 7, Indels: 2 0.87 0.10 0.03 Matches are distributed among these distances: 57 58 0.95 58 3 0.05 ACGTcount: A:0.34, C:0.25, G:0.11, T:0.29 Consensus pattern (57 bp): CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA Found at i:57142461 original size:26 final size:26 Alignment explanation
Indices: 57142432--57142483 Score: 104 Period size: 26 Copynumber: 2.0 Consensus size: 26 57142422 AGTTAGAAAA 57142432 ATCGAAAACCTAGAAAATTTACATTT 1 ATCGAAAACCTAGAAAATTTACATTT 57142458 ATCGAAAACCTAGAAAATTTACATTT 1 ATCGAAAACCTAGAAAATTTACATTT 57142484 TTTTCTAAAT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 26 26 1.00 ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31 Consensus pattern (26 bp): ATCGAAAACCTAGAAAATTTACATTT Found at i:57144910 original size:2 final size:2 Alignment explanation
Indices: 57144903--57144964 Score: 106 Period size: 2 Copynumber: 31.0 Consensus size: 2 57144893 CATTCCTTTC * 57144903 CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT 1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT * 57144945 CT CT CT CT CT CT CT GT CT CT 1 CT CT CT CT CT CT CT CT CT CT 57144965 TTTCCCCTTT Statistics Matches: 56, Mismatches: 4, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 56 1.00 ACGTcount: A:0.00, C:0.47, G:0.02, T:0.52 Consensus pattern (2 bp): CT Found at i:57147003 original size:13 final size:12 Alignment explanation
Indices: 57146972--57146996 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 57146962 TCCTGAATCA 57146972 TGATTTAATTTT 1 TGATTTAATTTT 57146984 TGATTTAATTTT 1 TGATTTAATTTT 57146996 T 1 T 57146997 TAGTTTATTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68 Consensus pattern (12 bp): TGATTTAATTTT Found at i:57147915 original size:44 final size:43 Alignment explanation
Indices: 57147832--57147997 Score: 143 Period size: 48 Copynumber: 3.6 Consensus size: 43 57147822 CATGTTTAGC * ** * 57147832 AGAGAAAAGGAAATTGGGAAAAAGAAAGGTCACAGGGAAAAACA 1 AGAGAAAAGGAAATTGGGAAGAAGAAACATCACA-GGAAAAAAA 57147876 AGAGAAAAGGAAATTGGGAAGAAGAAACATCAGCAGGAAAAAGAAA 1 AGAGAAAAGGAAATTGGGAAGAAGAAACATCA-CAGG-AAAA-AAA * * * * 57147922 TAAAAAAAAGGGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAA 1 -AGAGAAAA-GGAAATTGGGAAGAAGAAACATCA-CAGGAAAAA-AA * * * 57147969 AGAAAAAAAAAGAAATAGGGAAGAAGAAA 1 AG--AGAAAAGGAAATTGGGAAGAAGAAA 57147998 TGTCACCCAT Statistics Matches: 103, Mismatches: 11, Indels: 13 0.81 0.09 0.10 Matches are distributed among these distances: 44 31 0.30 45 6 0.06 46 4 0.04 47 30 0.29 48 32 0.31 ACGTcount: A:0.61, C:0.05, G:0.27, T:0.07 Consensus pattern (43 bp): AGAGAAAAGGAAATTGGGAAGAAGAAACATCACAGGAAAAAAA Found at i:57147977 original size:47 final size:47 Alignment explanation
Indices: 57147880--57148037 Score: 208 Period size: 48 Copynumber: 3.3 Consensus size: 47 57147870 AAAACAAGAG * * ** * 57147880 AAAAGGAAATTGGGAAGAAGAAACATCAGCAGGAAAAAGAAATAAAA 1 AAAAAGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA * 57147927 AAAAGGGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA 1 AAAA-AGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA * 57147975 AAAAAGAAATAGGGAAGAAGAAATGTCACCCATTAGGAAAAAGAAAGAAAA 1 AAAAAGAAATAGGGAAGAAGAAA---CA-TCATTAGGAAAAAGAAAGAAAA 57148026 AAAAAGAAATAG 1 AAAAAGAAATAG 57148038 TTTTAAAAGT Statistics Matches: 100, Mismatches: 6, Indels: 6 0.89 0.05 0.05 Matches are distributed among these distances: 47 22 0.22 48 43 0.43 50 2 0.02 51 33 0.33 ACGTcount: A:0.63, C:0.06, G:0.23, T:0.09 Consensus pattern (47 bp): AAAAAGAAATAGGGAAGAAGAAACATCATTAGGAAAAAGAAAGAAAA Found at i:57157868 original size:46 final size:46 Alignment explanation
Indices: 57157801--57157972 Score: 208 Period size: 46 Copynumber: 3.7 Consensus size: 46 57157791 AACCCGCCCC * 57157801 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA * 57157847 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C- 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA * * * * 57157895 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA * 57157940 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG 57157973 ATGCTCAACC Statistics Matches: 107, Mismatches: 10, Indels: 18 0.79 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 3 0.03 44 2 0.02 45 1 0.01 46 60 0.56 47 28 0.26 48 3 0.03 49 2 0.02 50 3 0.03 51 3 0.03 ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22 Consensus pattern (46 bp): TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA Found at i:57157913 original size:93 final size:93 Alignment explanation
Indices: 57157806--57157976 Score: 306 Period size: 93 Copynumber: 1.8 Consensus size: 93 57157796 GCCCCTAAGT * * 57157806 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 57157871 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * * 57157899 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 57157964 CGAGTTCGGATGC 66 CGAGTTCGGATGC 57157977 TCAACCATCC Statistics Matches: 74, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 93 74 1.00 ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:57160174 original size:741 final size:742 Alignment explanation
Indices: 57158709--57160176 Score: 2605 Period size: 741 Copynumber: 2.0 Consensus size: 742 57158699 TTCGAAAGCG 57158709 CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC 1 CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC 57158774 AAGCATAATTGGGAAGTTATTCTTGTCCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGATA 66 AAGCATAATTGGGAAGTTATTCTTGTCCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGATA 57158839 GTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAGTACATAATTTTTTCTGGATTAA 131 GTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAGTACATAATTTTTTCTGGATTAA 57158904 TATGAAATTTTGAATTATATGGTAGAAAAATGAAAGGTTTTTATAGATAAAAAAAAACTTTACAA 196 TATGAAATTTTGAATTATATGGTAGAAAAATGAAAGGTTTTTATAGATAAAAAAAAACTTTACAA 57158969 AGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCATGGAAAATTT 261 AGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCATGGAAAATTT 57159034 TGATTTTAATGAAAATCATGGCTATTTATTGTAACATGTAAAATTCGTTTAGGCTTGGGATAAAA 326 TGATTTTAATGAAAATCATGGCTATTTATTGTAACATGTAAAATTCGTTTAGGCTTGGGATAAAA 57159099 CGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCTAAGGATGAAATTGAAACTTA 391 CGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCTAAGGATGAAATTGAAACTTA 57159164 TGGAAAAGTTTATGGGCAAAATGTAATTTATACCTAGGGAATAAAATTGAATTACAATTGAATAT 456 TGGAAAAGTTTATGGGCAAAATGTAATTTATACCTAGGGAATAAAATTGAATTACAATTGAATAT 57159229 GAAATGATGAATTAAATTTATGGTTAAATTCATTTATAAGATCCGAAAAAACTCAAATCGAAGCT 521 GAAA-GATGAATTAAATTTATGGTTAAATTCATTTATAAGATCCGAAAAAACTCAAATCGAAGCT 57159294 AGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGATGATTATTAAGGTAA 585 AGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGATGATTATTAAGGTAA 57159359 GTTCGTGTACAGAAATTGTGACATATATATGCTTGTATTGAATGTGTTTCTGTGATTGTATGAAA 650 GTTCGTGTACAGAAATTGTGACATATATATGCTTGTATTGAATGTGTTTCTGTGATTGTATGAAA 57159424 ATGAGATGTTTACGAAGGACGTGTTCGA 715 ATGAGATGTTTACGAAGGACGTGTTCGA 57159452 CTCCAGCGACGGTCTCGGG-TTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC 1 CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC 57159516 AAGCATAATTGGGAAG-TATTCTTGTCCCATTTTTAGTAATTT-TTATATTTTTGAGATCGGGAT 66 AAGCATAATTGGGAAGTTATTCTTGT-CCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGAT 57159579 AGTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAAGTACATAAATTTTTTCTTGGA 130 AGTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATC-AAGTACAT-AATTTTTTC-TGGA 57159644 TTAATATGAAATTTTGAAATT-TATGGTAG-AAAATGAAAGGTTTTTTATAGAT-AAAAAAAACT 192 TTAATATGAAATTTTG-AATTATATGGTAGAAAAATGAAAGG-TTTTTATAGATAAAAAAAAAC- 57159706 TTTACAAAGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCCATG 254 TTTACAAAGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAA-CCATG * 57159771 GAAAAATTTTGATTTTTATGAAAATCATGGGCTA-TTATTGTAACATGTAAAATTCGTTTAGGCT 318 G-AAAATTTTGATTTTAATGAAAATCAT-GGCTATTTATTGTAACATGTAAAATTCGTTTAGGCT 57159835 TGGGATAAAGA-GCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCCTAAGGATGA 381 TGGGATAAA-ACGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAG-CTAAGGATGA * 57159899 AATTGAAACTTATGG-AAAGTTTATGGGCAAAATGGTAATTT-TACCTAGGGTAT-AAATTGAAT 444 AATTGAAACTTATGGAAAAGTTTATGGGCAAAAT-GTAATTTATACCTAGGGAATAAAATTGAAT 57159961 T-CAATTGAATATG-AA-ATGAATTAAATTTATGGTTAAATTCATTTATATAGATCCG-AAAAAC 508 TACAATTGAATATGAAAGATGAATTAAATTTATGGTTAAATTCATTTATA-AGATCCGAAAAAAC 57160022 TCAAATTCGAAGCTAGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTT-ATTGTATGGAT 572 TCAAA-TCGAAGCTAGATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGAT * 57160086 GATTATTAAGGTAAGTTCGTGTAACCG-AATTGTGTACATATATATGCTTGTATTGAATGTG-TT 636 GATTATTAAGGTAAGTTCGTGT-ACAGAAATTGTG-ACATATATATGCTTGTATTGAATGTGTTT 57160149 CTGTGATTGTATGAAATAT-AGATGTTTA 699 CTGTGATTGTATGAAA-ATGAGATGTTTA 57160177 AAGTATGAAA Statistics Matches: 704, Mismatches: 3, Indels: 38 0.94 0.00 0.05 Matches are distributed among these distances: 741 181 0.26 742 170 0.24 743 50 0.07 744 110 0.16 745 20 0.03 746 135 0.19 747 38 0.05 ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35 Consensus pattern (742 bp): CTCCAGCGACGGTCTCGGGTTTTGGGGTGTTACAAAAACCCTAGGAGAGAGAGAAGAAACTAATC AAGCATAATTGGGAAGTTATTCTTGTCCATTTTTAGTAATTTGTTATATTTTTGAGATCGGGATA GTTTAATCTATCTATTTTGGGATTAATTTGTAAAGATATCAAGTACATAATTTTTTCTGGATTAA TATGAAATTTTGAATTATATGGTAGAAAAATGAAAGGTTTTTATAGATAAAAAAAAACTTTACAA AGAGAATTTTAATGAAATTTTGATTTAGGGACTAAATTGAAAAGTGGTAAAACCATGGAAAATTT TGATTTTAATGAAAATCATGGCTATTTATTGTAACATGTAAAATTCGTTTAGGCTTGGGATAAAA CGCTCGGAATAAAGATTAAATTGCATGAATTTCATTTTCCGAGCTAAGGATGAAATTGAAACTTA TGGAAAAGTTTATGGGCAAAATGTAATTTATACCTAGGGAATAAAATTGAATTACAATTGAATAT GAAAGATGAATTAAATTTATGGTTAAATTCATTTATAAGATCCGAAAAAACTCAAATCGAAGCTA GATCGAGGAAAAGAAAAAGTTTCAGATTAGTAGAATTTAATTGTATGGATGATTATTAAGGTAAG TTCGTGTACAGAAATTGTGACATATATATGCTTGTATTGAATGTGTTTCTGTGATTGTATGAAAA TGAGATGTTTACGAAGGACGTGTTCGA Found at i:57163334 original size:91 final size:93 Alignment explanation
Indices: 57163184--57163352 Score: 288 Period size: 91 Copynumber: 1.8 Consensus size: 93 57163174 AGATGGTTGA * * 57163184 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT 57163249 TGAGTCCGAGTTCGTGAGATGTAACTAG 66 TGAGTCCGAGTTCGTGAGATGTAACTAG * * 57163277 GCATCCGAACTC-TTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT 57163340 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 57163353 ACTTAGGGGC Statistics Matches: 72, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 91 50 0.69 92 11 0.15 93 11 0.15 ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAGATGTAACTAG Found at i:57163357 original size:46 final size:46 Alignment explanation
Indices: 57163189--57163357 Score: 197 Period size: 46 Copynumber: 3.7 Consensus size: 46 57163179 GTTGAGCATT * * 57163189 CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTC 1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC * * * 57163235 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC 1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--C 57163282 CGAACTC-TTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCC 1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC * 57163326 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 57163358 GGGGCGGGTT Statistics Matches: 103, Mismatches: 9, Indels: 22 0.77 0.07 0.16 Matches are distributed among these distances: 42 2 0.02 43 5 0.05 44 7 0.07 45 20 0.19 46 54 0.52 47 8 0.08 48 5 0.05 49 2 0.02 ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29 Consensus pattern (46 bp): CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC Found at i:57173550 original size:40 final size:40 Alignment explanation
Indices: 57173488--57173667 Score: 283 Period size: 40 Copynumber: 4.5 Consensus size: 40 57173478 TTCGGATGAC 57173488 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT * * 57173528 ATCCAGGCTAAGTCCCGTAGGCATTTGTGCTAGTGACTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT * * 57173568 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT * 57173608 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT * 57173648 ATCC-GGCTAAATCCCGAAGG 1 ATCCGGGCTAAGTCCCGAAGG 57173668 TACTTGGGTT Statistics Matches: 129, Mismatches: 10, Indels: 3 0.91 0.07 0.02 Matches are distributed among these distances: 39 15 0.12 40 112 0.87 41 2 0.02 ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27 Consensus pattern (40 bp): ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT Found at i:57176421 original size:19 final size:19 Alignment explanation
Indices: 57176378--57176421 Score: 54 Period size: 19 Copynumber: 2.3 Consensus size: 19 57176368 AAATTATGAC 57176378 AAATTCAAAATTAAGGAGT 1 AAATTCAAAATTAAGGAGT * 57176397 AGAATTGAAAA-TAAGGAGCT 1 A-AATTCAAAATTAAGGAG-T 57176417 AAATT 1 AAATT 57176422 TAGCTTAAAG Statistics Matches: 22, Mismatches: 1, Indels: 4 0.81 0.04 0.15 Matches are distributed among these distances: 19 12 0.55 20 10 0.45 ACGTcount: A:0.52, C:0.05, G:0.18, T:0.25 Consensus pattern (19 bp): AAATTCAAAATTAAGGAGT Found at i:57178339 original size:13 final size:13 Alignment explanation
Indices: 57178321--57178352 Score: 55 Period size: 13 Copynumber: 2.5 Consensus size: 13 57178311 ATCTCGAAAG 57178321 CCACACGGCCGTT 1 CCACACGGCCGTT 57178334 CCACACGGCCGTT 1 CCACACGGCCGTT * 57178347 TCACAC 1 CCACAC 57178353 AGTCATGTGA Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 13 18 1.00 ACGTcount: A:0.19, C:0.47, G:0.19, T:0.16 Consensus pattern (13 bp): CCACACGGCCGTT Found at i:57179173 original size:21 final size:21 Alignment explanation
Indices: 57179147--57179198 Score: 77 Period size: 21 Copynumber: 2.5 Consensus size: 21 57179137 GGTACCCTTC * 57179147 AAATCAGGACGCACGACGGGA 1 AAATCAGGACGCACAACGGGA 57179168 AAATCAGGACGCACAACGGGA 1 AAATCAGGACGCACAACGGGA * * 57179189 CAATTAGGAC 1 AAATCAGGAC 57179199 ACTGTCATAT Statistics Matches: 28, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 21 28 1.00 ACGTcount: A:0.40, C:0.23, G:0.29, T:0.08 Consensus pattern (21 bp): AAATCAGGACGCACAACGGGA Found at i:57180583 original size:9 final size:9 Alignment explanation
Indices: 57180569--57180598 Score: 60 Period size: 9 Copynumber: 3.3 Consensus size: 9 57180559 AGCTAACTCA 57180569 AACCTAAAT 1 AACCTAAAT 57180578 AACCTAAAT 1 AACCTAAAT 57180587 AACCTAAAT 1 AACCTAAAT 57180596 AAC 1 AAC 57180599 AAACTCATTA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 21 1.00 ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20 Consensus pattern (9 bp): AACCTAAAT Found at i:57180984 original size:15 final size:17 Alignment explanation
Indices: 57180964--57181005 Score: 52 Period size: 15 Copynumber: 2.6 Consensus size: 17 57180954 TTAGCTCTCC 57180964 TACTATATTATAT-A-A 1 TACTATATTATATCATA * 57180979 TACTATATAATATCATA 1 TACTATATTATATCATA * 57180996 TAATATATTA 1 TACTATATTA 57181006 ATAGTTTATA Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 15 12 0.55 16 1 0.05 17 9 0.41 ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45 Consensus pattern (17 bp): TACTATATTATATCATA Found at i:57181095 original size:23 final size:26 Alignment explanation
Indices: 57181057--57181111 Score: 71 Period size: 25 Copynumber: 2.2 Consensus size: 26 57181047 CATGTAATAC * 57181057 TATATATATTGTTAT-AATATATT-T 1 TATATATATAGTTATAAATATATTAT 57181081 TATATA-ATAGTTATAGAATATATTAT 1 TATATATATAGTTATA-AATATATTAT 57181107 TATAT 1 TATAT 57181112 TATCATTAAA Statistics Matches: 27, Mismatches: 1, Indels: 4 0.84 0.03 0.12 Matches are distributed among these distances: 23 7 0.26 24 6 0.22 25 8 0.30 26 6 0.22 ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53 Consensus pattern (26 bp): TATATATATAGTTATAAATATATTAT Found at i:57182008 original size:4 final size:4 Alignment explanation
Indices: 57181992--57182029 Score: 67 Period size: 4 Copynumber: 9.5 Consensus size: 4 57181982 AACAAATACA * 57181992 AATT AATT TATT AATT AATT AATT AATT AATT AATT AA 1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AA 57182030 GAATTCAAAC Statistics Matches: 32, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 4 32 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (4 bp): AATT Found at i:57183104 original size:21 final size:21 Alignment explanation
Indices: 57183080--57183123 Score: 88 Period size: 21 Copynumber: 2.1 Consensus size: 21 57183070 CTCTTCAATT 57183080 GACACTCACAGCAGACTCAAA 1 GACACTCACAGCAGACTCAAA 57183101 GACACTCACAGCAGACTCAAA 1 GACACTCACAGCAGACTCAAA 57183122 GA 1 GA 57183124 AGCTCTATTT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 23 1.00 ACGTcount: A:0.43, C:0.32, G:0.16, T:0.09 Consensus pattern (21 bp): GACACTCACAGCAGACTCAAA Found at i:57186115 original size:379 final size:379 Alignment explanation
Indices: 57185416--57186160 Score: 1481 Period size: 379 Copynumber: 2.0 Consensus size: 379 57185406 GCATTCAATA * 57185416 GCAATAAATTATAATGAGAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG 1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG 57185481 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA 66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA 57185546 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA 131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA 57185611 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT 196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT 57185676 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC 261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC 57185741 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT 326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT 57185795 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG 1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG 57185860 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA 66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA 57185925 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA 131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA 57185990 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT 196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT 57186055 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC 261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC 57186120 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA 326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA 57186161 TCATTTTATT Statistics Matches: 365, Mismatches: 1, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 379 365 1.00 ACGTcount: A:0.42, C:0.18, G:0.17, T:0.24 Consensus pattern (379 bp): GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT Found at i:57186164 original size:15 final size:15 Alignment explanation
Indices: 57186144--57186175 Score: 55 Period size: 15 Copynumber: 2.1 Consensus size: 15 57186134 AAATTTCCCC 57186144 AATCATCTTATTTCT 1 AATCATCTTATTTCT * 57186159 AATCATTTTATTTCT 1 AATCATCTTATTTCT 57186174 AA 1 AA 57186176 GAAACTTACA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53 Consensus pattern (15 bp): AATCATCTTATTTCT Found at i:57186887 original size:64 final size:64 Alignment explanation
Indices: 57186808--57186954 Score: 285 Period size: 64 Copynumber: 2.3 Consensus size: 64 57186798 TATAGTATTT 57186808 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA 1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA * 57186872 AAATTAAAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA 1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA 57186936 AAATTAGAGGATTCGAACT 1 AAATTAGAGGATTCGAACT 57186955 AATATAACAT Statistics Matches: 81, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 64 81 1.00 ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36 Consensus pattern (64 bp): AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA Found at i:57190539 original size:21 final size:21 Alignment explanation
Indices: 57190513--57190567 Score: 94 Period size: 21 Copynumber: 2.6 Consensus size: 21 57190503 ACCATTGTTT 57190513 CTAATCTCACCGCTACAGT-A 1 CTAATCTCACCGCTACAGTAA 57190533 CTCAATCTCACCGCTACAGTAA 1 CT-AATCTCACCGCTACAGTAA 57190555 CTAATCTCACCGC 1 CTAATCTCACCGC 57190568 CACCGCTGTT Statistics Matches: 33, Mismatches: 0, Indels: 3 0.92 0.00 0.08 Matches are distributed among these distances: 20 2 0.06 21 28 0.85 22 3 0.09 ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24 Consensus pattern (21 bp): CTAATCTCACCGCTACAGTAA Found at i:57195898 original size:28 final size:29 Alignment explanation
Indices: 57195858--57195942 Score: 109 Period size: 29 Copynumber: 3.0 Consensus size: 29 57195848 CCAGGTTTTT * 57195858 GGACACGGGCGTGT-CTAGGCCGTGTGAG 1 GGACACGGGCGTGTGCTCGGCCGTGTGAG * * * 57195886 GGACACGAGCGTGTGCTCTGCCATGTGAG 1 GGACACGGGCGTGTGCTCGGCCGTGTGAG * * 57195915 GGACATGGGCGTGTGCTCGACCGTGTGA 1 GGACACGGGCGTGTGCTCGGCCGTGTGA 57195943 AAACCCCTGT Statistics Matches: 47, Mismatches: 9, Indels: 1 0.82 0.16 0.02 Matches are distributed among these distances: 28 13 0.28 29 34 0.72 ACGTcount: A:0.15, C:0.22, G:0.42, T:0.20 Consensus pattern (29 bp): GGACACGGGCGTGTGCTCGGCCGTGTGAG Found at i:57198510 original size:6 final size:7 Alignment explanation
Indices: 57198470--57198549 Score: 67 Period size: 7 Copynumber: 11.4 Consensus size: 7 57198460 TTCAATCCCT * 57198470 AATTTCC 1 AATTTTC 57198477 AATTTT- 1 AATTTTC 57198483 ATATTTTC 1 A-ATTTTC * * 57198491 AATCTCC 1 AATTTTC 57198498 AAATTTT- 1 -AATTTTC 57198505 AATTTTC 1 AATTTTC * 57198512 AATTTCC 1 AATTTTC * 57198519 AATTTCC 1 AATTTTC 57198526 AATTTTC 1 AATTTTC 57198533 AA-TTTC 1 AATTTTC 57198539 GAATTTTC 1 -AATTTTC 57198547 AAT 1 AAT 57198550 CCTCAATCCT Statistics Matches: 60, Mismatches: 7, Indels: 12 0.76 0.09 0.15 Matches are distributed among these distances: 6 11 0.18 7 40 0.67 8 9 0.15 ACGTcount: A:0.31, C:0.17, G:0.01, T:0.50 Consensus pattern (7 bp): AATTTTC Found at i:57198528 original size:14 final size:14 Alignment explanation
Indices: 57198485--57198549 Score: 78 Period size: 14 Copynumber: 4.6 Consensus size: 14 57198475 CCAATTTTAT * 57198485 ATTTTCAATCTCCAA 1 ATTTTCAATTTCC-A * 57198500 ATTTT-AATTTTCA 1 ATTTTCAATTTCCA * 57198513 ATTTCCAATTTCCA 1 ATTTTCAATTTCCA * 57198527 ATTTTCAATTTCGA 1 ATTTTCAATTTCCA 57198541 ATTTTCAAT 1 ATTTTCAAT 57198550 CCTCAATCCT Statistics Matches: 43, Mismatches: 6, Indels: 3 0.83 0.12 0.06 Matches are distributed among these distances: 13 5 0.12 14 33 0.77 15 5 0.12 ACGTcount: A:0.31, C:0.18, G:0.02, T:0.49 Consensus pattern (14 bp): ATTTTCAATTTCCA Found at i:57198549 original size:21 final size:20 Alignment explanation
Indices: 57198470--57198545 Score: 98 Period size: 21 Copynumber: 3.6 Consensus size: 20 57198460 TTCAATCCCT 57198470 AATTTCCAATTTTATATTTTC 1 AATTTCCAATTTTA-ATTTTC * 57198491 AATCTCCAAATTTTAATTTTC 1 AATTTCC-AATTTTAATTTTC * 57198512 AATTTCCAATTTCCAATTTTC 1 AATTTCCAATTT-TAATTTTC * 57198533 AATTTCGAATTTT 1 AATTTCCAATTTT 57198546 CAATCCTCAA Statistics Matches: 48, Mismatches: 5, Indels: 5 0.83 0.09 0.09 Matches are distributed among these distances: 20 5 0.10 21 36 0.75 22 7 0.15 ACGTcount: A:0.30, C:0.17, G:0.01, T:0.51 Consensus pattern (20 bp): AATTTCCAATTTTAATTTTC Found at i:57198555 original size:21 final size:21 Alignment explanation
Indices: 57198510--57198556 Score: 58 Period size: 21 Copynumber: 2.2 Consensus size: 21 57198500 ATTTTAATTT ** 57198510 TCAATTTCCAATTTCCAATTT 1 TCAATTTCCAATTTCCAATCC * * 57198531 TCAATTTCGAATTTTCAATCC 1 TCAATTTCCAATTTCCAATCC 57198552 TCAAT 1 TCAAT 57198557 CCTCAAATAT Statistics Matches: 22, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 21 22 1.00 ACGTcount: A:0.30, C:0.23, G:0.02, T:0.45 Consensus pattern (21 bp): TCAATTTCCAATTTCCAATCC Found at i:57201025 original size:18 final size:20 Alignment explanation
Indices: 57200997--57201045 Score: 59 Period size: 18 Copynumber: 2.6 Consensus size: 20 57200987 TTTTATATGT * 57200997 AAAAT-TATAAAAATT-TCA 1 AAAATATATAAAAATTCTAA * 57201015 AAAATAT-TAAAGATTCTAA 1 AAAATATATAAAAATTCTAA 57201034 AAAATATATAAA 1 AAAATATATAAA 57201046 GAAATTTTAT Statistics Matches: 26, Mismatches: 2, Indels: 4 0.81 0.06 0.12 Matches are distributed among these distances: 18 12 0.46 19 10 0.38 20 4 0.15 ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31 Consensus pattern (20 bp): AAAATATATAAAAATTCTAA Found at i:57204701 original size:35 final size:36 Alignment explanation
Indices: 57204631--57204715 Score: 109 Period size: 35 Copynumber: 2.4 Consensus size: 36 57204621 TACCAATACA * 57204631 ACCGAATATACAAGATCCATTATATCATCACATATG 1 ACCGAATATACAAGATCCAATATATCATCACATATG * * * * * 57204667 GCCGAATATACATG-TTCAATATGTCATCATATATG 1 ACCGAATATACAAGATCCAATATATCATCACATATG 57204702 ACCGAATATACAAG 1 ACCGAATATACAAG 57204716 TTAAGTAGAA Statistics Matches: 41, Mismatches: 8, Indels: 1 0.82 0.16 0.02 Matches are distributed among these distances: 35 29 0.71 36 12 0.29 ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28 Consensus pattern (36 bp): ACCGAATATACAAGATCCAATATATCATCACATATG Found at i:57204730 original size:35 final size:35 Alignment explanation
Indices: 57204631--57204771 Score: 103 Period size: 35 Copynumber: 4.0 Consensus size: 35 57204621 TACCAATACA * * 57204631 ACCGAATATACAAGATCCATTAT-ATCATCACATATG 1 ACCGAATATACAAG-TTCAATATGA-CATCACATATG * * * * 57204667 GCCGAATATACATGTTCAATATGTCATCATATATG 1 ACCGAATATACAAGTTCAATATGACATCACATATG * 57204702 ACCGAATATACAAGTT-AAGTA-GAACATCACTTAT- 1 ACCGAATATACAAGTTCAA-TATG-ACATCACATATG * * * 57204736 AGCCAAATTTTCAAGTTCAATAT-ATCATCACATATG 1 A-CCGAATATACAAGTTCAATATGA-CATCACATATG 57204772 TACATACCAA Statistics Matches: 82, Mismatches: 15, Indels: 16 0.73 0.13 0.14 Matches are distributed among these distances: 34 5 0.06 35 63 0.77 36 14 0.17 ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30 Consensus pattern (35 bp): ACCGAATATACAAGTTCAATATGACATCACATATG Found at i:57212571 original size:35 final size:35 Alignment explanation
Indices: 57212451--57212576 Score: 130 Period size: 35 Copynumber: 3.6 Consensus size: 35 57212441 AATACATAAG * * * 57212451 GTTCATTATATCATCACATATGGCCAAATATACAT 1 GTTCAATATATCATCACATATAGCCAAATATACAA * * 57212486 GTTCAATATGTCA-C-CATATACGACCGAATATACAA 1 GTTCAATATATCATCACATATA-G-CCAAATATACAA * * * * * 57212521 GTTAAATAGAACATCACTTATAGCCAAATTTACAA 1 GTTCAATATATCATCACATATAGCCAAATATACAA 57212556 GTTCAATATATCATCACATAT 1 GTTCAATATATCATCACATAT 57212577 GTACATACCT Statistics Matches: 71, Mismatches: 16, Indels: 8 0.75 0.17 0.08 Matches are distributed among these distances: 33 5 0.07 34 2 0.03 35 57 0.80 36 2 0.03 37 5 0.07 ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31 Consensus pattern (35 bp): GTTCAATATATCATCACATATAGCCAAATATACAA Found at i:57218672 original size:24 final size:24 Alignment explanation
Indices: 57218645--57218700 Score: 67 Period size: 24 Copynumber: 2.3 Consensus size: 24 57218635 GATTTTATAT ** * 57218645 TTTATTAGTTTAATATATTTAACA 1 TTTATTAGCATAATATACTTAACA * 57218669 TTTATTAGCATAATATACTTGACA 1 TTTATTAGCATAATATACTTAACA * 57218693 TTAATTAG 1 TTTATTAG 57218701 AATTAGGTTT Statistics Matches: 27, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 24 27 1.00 ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48 Consensus pattern (24 bp): TTTATTAGCATAATATACTTAACA Found at i:57222329 original size:24 final size:24 Alignment explanation
Indices: 57222301--57222363 Score: 81 Period size: 24 Copynumber: 2.6 Consensus size: 24 57222291 TTTCTAGAAG * ** 57222301 ATTTAGTATTTATTAGTATAATAT 1 ATTTAGCATTTATTAACATAATAT 57222325 ATTTAGCATTTATTAACATAATAT 1 ATTTAGCATTTATTAACATAATAT * * 57222349 ATTTGGCATTGATTA 1 ATTTAGCATTTATTA 57222364 GAATTAAGTT Statistics Matches: 34, Mismatches: 5, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 24 34 1.00 ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49 Consensus pattern (24 bp): ATTTAGCATTTATTAACATAATAT Found at i:57227306 original size:11 final size:11 Alignment explanation
Indices: 57227292--57227316 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 57227282 AGTATATTAA 57227292 ACACCAATTCC 1 ACACCAATTCC 57227303 ACACCAATTCC 1 ACACCAATTCC 57227314 ACA 1 ACA 57227317 ATTAACAAAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16 Consensus pattern (11 bp): ACACCAATTCC Found at i:57229051 original size:13 final size:13 Alignment explanation
Indices: 57229033--57229076 Score: 56 Period size: 13 Copynumber: 3.5 Consensus size: 13 57229023 ATCGAAAAAA 57229033 GAAAAAATAAAGT 1 GAAAAAATAAAGT ** 57229046 G-AAAAA-AATTT 1 GAAAAAATAAAGT 57229057 GAAAAAATAAAGT 1 GAAAAAATAAAGT 57229070 GAAAAAA 1 GAAAAAA 57229077 AATTTGAAAA Statistics Matches: 25, Mismatches: 4, Indels: 4 0.76 0.12 0.12 Matches are distributed among these distances: 11 4 0.16 12 10 0.40 13 11 0.44 ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16 Consensus pattern (13 bp): GAAAAAATAAAGT Found at i:57229065 original size:24 final size:25 Alignment explanation
Indices: 57229033--57229088 Score: 105 Period size: 25 Copynumber: 2.3 Consensus size: 25 57229023 ATCGAAAAAA 57229033 GAAAAAATAAAGTG-AAAAAAATTT 1 GAAAAAATAAAGTGAAAAAAAATTT 57229057 GAAAAAATAAAGTGAAAAAAAATTT 1 GAAAAAATAAAGTGAAAAAAAATTT 57229082 GAAAAAA 1 GAAAAAA 57229089 AAACGACAAC Statistics Matches: 31, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 24 14 0.45 25 17 0.55 ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18 Consensus pattern (25 bp): GAAAAAATAAAGTGAAAAAAAATTT Found at i:57229086 original size:11 final size:12 Alignment explanation
Indices: 57229047--57229090 Score: 61 Period size: 12 Copynumber: 3.6 Consensus size: 12 57229037 AAATAAAGTG 57229047 AAAAAAATTTGA 1 AAAAAAATTTGA ** 57229059 AAAAATAAAGTGA 1 AAAAA-AATTTGA 57229072 AAAAAAATTTGA 1 AAAAAAATTTGA 57229084 AAAAAAA 1 AAAAAAA 57229091 ACGACAACAA Statistics Matches: 27, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 12 17 0.63 13 10 0.37 ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18 Consensus pattern (12 bp): AAAAAAATTTGA Found at i:57229087 original size:13 final size:13 Alignment explanation
Indices: 57229047--57229091 Score: 58 Period size: 13 Copynumber: 3.5 Consensus size: 13 57229037 AAATAAAGTG 57229047 AAAAAAATTTGAA 1 AAAAAAATTTGAA * 57229060 AAAATAAA-GTG-A 1 AAAA-AAATTTGAA 57229072 AAAAAAATTTGAA 1 AAAAAAATTTGAA 57229085 AAAAAAA 1 AAAAAAA 57229092 CGACAACAAT Statistics Matches: 27, Mismatches: 2, Indels: 6 0.77 0.06 0.17 Matches are distributed among these distances: 11 3 0.11 12 7 0.26 13 14 0.52 14 3 0.11 ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18 Consensus pattern (13 bp): AAAAAAATTTGAA Found at i:57230906 original size:40 final size:40 Alignment explanation
Indices: 57230860--57231092 Score: 272 Period size: 40 Copynumber: 5.8 Consensus size: 40 57230850 TATAACCACA * * * 57230860 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT * * * 57230900 CGCACAAATGCCTTCGGGTCTTAGCCCGGACATATCAACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT * * * 57230940 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACT * * * * 57230980 AGCACAATTGCCTTCGGGTCTTAACCTGGGTATAGCAACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT * * * 57231020 AGCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATC-ACT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACT * * 57231060 AGCATAAATGCCTTCGGGACTTAGCCCGGATAT 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT 57231093 CATTCAAATG Statistics Matches: 164, Mismatches: 26, Indels: 7 0.83 0.13 0.04 Matches are distributed among these distances: 39 4 0.02 40 153 0.93 41 7 0.04 ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24 Consensus pattern (40 bp): AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACT Found at i:57230968 original size:80 final size:80 Alignment explanation
Indices: 57230860--57231089 Score: 300 Period size: 80 Copynumber: 2.9 Consensus size: 80 57230850 TATAACCACA * * * * * * 57230860 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAG 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAG * 57230924 CCCGGACATATCAACT 65 CCCGGACATAGCAACT * * * 57230940 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAAC 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGC * ** 57231005 CTGGGTATAGCAACT 66 CCGGACATAGCAACT * * * 57231020 AGCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC 1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGC 57231085 CCGGA 66 CCGGA 57231090 TATCATTCAA Statistics Matches: 128, Mismatches: 21, Indels: 2 0.85 0.14 0.01 Matches are distributed among these distances: 80 125 0.98 81 3 0.02 ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24 Consensus pattern (80 bp): AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGC CCGGACATAGCAACT Found at i:57231073 original size:120 final size:120 Alignment explanation
Indices: 57230860--57231091 Score: 376 Period size: 120 Copynumber: 1.9 Consensus size: 120 57230850 TATAACCACA * 57230860 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC 1 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTCTTAGC * * * * 57230925 CCGGACATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT 66 CCGGAAAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAAAATCACT * * 57230980 AGCACAATTGCCTTCGGGTCTTAACCTGGGTATAGCAACTAGCACAAATGCCTTTGGGTCTTAGC 1 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTCTTAGC * 57231045 CCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA 66 CCGGA-AAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA 57231092 TCATTCAAAT Statistics Matches: 103, Mismatches: 8, Indels: 2 0.91 0.07 0.02 Matches are distributed among these distances: 120 99 0.96 121 4 0.04 ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24 Consensus pattern (120 bp): AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTCTTAGC CCGGAAAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAAAATCACT Found at i:57238955 original size:39 final size:40 Alignment explanation
Indices: 57238868--57239096 Score: 304 Period size: 39 Copynumber: 5.8 Consensus size: 40 57238858 ATAACCACAA * * * * 57238868 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC 57238908 GCACAAATGCCTTCGGGTCTTAGCCC-GATATATCAACTC 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC * * 57238947 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC * * * 57238986 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTC 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC * * 57239025 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC * * 57239065 GCATAAATGCCTTCGGGACTTAGCCCGGATAT 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT 57239097 CATTCAAATG Statistics Matches: 166, Mismatches: 19, Indels: 9 0.86 0.10 0.05 Matches are distributed among these distances: 38 4 0.02 39 96 0.58 40 63 0.38 41 3 0.02 ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC Found at i:57242277 original size:28 final size:28 Alignment explanation
Indices: 57242245--57242372 Score: 175 Period size: 29 Copynumber: 4.5 Consensus size: 28 57242235 ATAGTAAGTC * 57242245 CGCACACTTAGTGTTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * 57242273 CGCACACTTAGTGCTTACATAATCAAACT 1 CGCACACTTAGTGC-TATATAATCAAACT 57242302 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * ** * * 57242330 TGCACACTTAGTGCTATGCAATTTAAACC 1 CGCACACTTAGTGCTATATAA-TCAAACT 57242359 CGCACACTTAGTGC 1 CGCACACTTAGTGC 57242373 CAATCTCATG Statistics Matches: 89, Mismatches: 9, Indels: 3 0.88 0.09 0.03 Matches are distributed among these distances: 28 44 0.49 29 45 0.51 ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:57242335 original size:57 final size:57 Alignment explanation
Indices: 57242244--57242372 Score: 188 Period size: 57 Copynumber: 2.3 Consensus size: 57 57242234 TATAGTAAGT * 57242244 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC 1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC * * * * * 57242301 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC 1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC 57242358 CCGCACACTTAGTGC 1 CCGCACACTTAGTGC 57242373 CAATCTCATG Statistics Matches: 64, Mismatches: 7, Indels: 2 0.88 0.10 0.03 Matches are distributed among these distances: 57 61 0.95 58 3 0.05 ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29 Consensus pattern (57 bp): CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC Found at i:57250324 original size:29 final size:29 Alignment explanation
Indices: 57250267--57250423 Score: 212 Period size: 29 Copynumber: 5.5 Consensus size: 29 57250257 ATAGTAAGTC * * 57250267 CGCACATTTAGTG-TTATATAATCAAACT 1 CGCACACTTAGTGCTTACATAATCAAACT 57250295 CGCACACTTAGTGCTTACATAATCAAACT 1 CGCACACTTAGTGCTTACATAATCAAACT 57250324 CGCACACTTAGTGCTTACATAATCAAACT 1 CGCACACTTAGTGCTTACATAATCAAACT * 57250353 CGCACACTTAGTGC-TATATAATCAAACT 1 CGCACACTTAGTGCTTACATAATCAAACT * * * * * 57250381 TGCACACTTAGTGCTATGCA-ATTTAAACC 1 CGCACACTTAGTGCT-TACATAATCAAACT 57250410 CGCACACTTAGTGC 1 CGCACACTTAGTGC 57250424 CAATCTCATG Statistics Matches: 116, Mismatches: 10, Indels: 5 0.89 0.08 0.04 Matches are distributed among these distances: 28 38 0.33 29 76 0.66 30 2 0.02 ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29 Consensus pattern (29 bp): CGCACACTTAGTGCTTACATAATCAAACT Found at i:57250375 original size:57 final size:58 Alignment explanation
Indices: 57250267--57250423 Score: 212 Period size: 57 Copynumber: 2.7 Consensus size: 58 57250257 ATAGTAAGTC * * 57250267 CGCACATTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT 1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT * 57250324 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT 1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT * * * * * 57250381 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC 1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC 57250424 CAATCTCATG Statistics Matches: 90, Mismatches: 8, Indels: 4 0.88 0.08 0.04 Matches are distributed among these distances: 57 59 0.66 58 31 0.34 ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29 Consensus pattern (58 bp): CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT Found at i:57254235 original size:29 final size:28 Alignment explanation
Indices: 57254198--57254262 Score: 103 Period size: 29 Copynumber: 2.3 Consensus size: 28 57254188 TAAGATGTTC * 57254198 ACCACAAAGGTGTCTTTAAACAGAGGTTT 1 ACCACAAAGGTGTCCTTAAACAGAGG-TT * 57254227 GCCACAAAGGTGTCCTTAAACAGAGGTT 1 ACCACAAAGGTGTCCTTAAACAGAGGTT 57254255 ACCACAAA 1 ACCACAAA 57254263 AACTTACCTT Statistics Matches: 33, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 28 9 0.27 29 24 0.73 ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22 Consensus pattern (28 bp): ACCACAAAGGTGTCCTTAAACAGAGGTT Found at i:57257429 original size:46 final size:46 Alignment explanation
Indices: 57257311--57257433 Score: 133 Period size: 48 Copynumber: 2.6 Consensus size: 46 57257301 ATATGTGTAC * * * 57257311 TAGTCTAAGACATATCTGGGACATGCATCGGCCATGAGATATTTAAGC 1 TAGTCTAAGACATGTCTGGGACATGCATCGGCCATGAGACA--TAAGA * * * 57257359 CAGTTTAAGACATGTCTGGTACATGCATCGG-CATTGAGACA-AGAGA 1 TAGTCTAAGACATGTCTGGGACATGCATCGGCCA-TGAGACATA-AGA * 57257405 TAGTGTAAGACATGTCTGGGACATGCATC 1 TAGTCTAAGACATGTCTGGGACATGCATC 57257434 AGCCTCGCGA Statistics Matches: 64, Mismatches: 9, Indels: 6 0.81 0.11 0.08 Matches are distributed among these distances: 45 1 0.02 46 28 0.44 47 2 0.03 48 33 0.52 ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26 Consensus pattern (46 bp): TAGTCTAAGACATGTCTGGGACATGCATCGGCCATGAGACATAAGA Found at i:57264230 original size:39 final size:39 Alignment explanation
Indices: 57264185--57264266 Score: 137 Period size: 39 Copynumber: 2.1 Consensus size: 39 57264175 AAGCAAGGCA 57264185 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG * * * 57264224 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTTGTG 1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG 57264263 CTGG 1 CTGG 57264267 TAACATAATT Statistics Matches: 40, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 39 40 1.00 ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24 Consensus pattern (39 bp): CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG Found at i:57268831 original size:47 final size:47 Alignment explanation
Indices: 57268778--57269224 Score: 696 Period size: 47 Copynumber: 9.5 Consensus size: 47 57268768 ATTCAGCCAA * * 57268778 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGC 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 57268825 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 57268872 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 57268919 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 57268968 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 57269015 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 57269062 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * 57269109 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * * * * * * 57269156 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT * * 57269203 GAAAGTGCATAAATGTGATAAG 1 GAAAGTGTATATATGTGATAAG 57269225 TCCCGAAGGG Statistics Matches: 373, Mismatches: 25, Indels: 4 0.93 0.06 0.01 Matches are distributed among these distances: 47 328 0.88 49 45 0.12 ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29 Consensus pattern (47 bp): GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT Found at i:57269101 original size:190 final size:188 Alignment explanation
Indices: 57268778--57269224 Score: 714 Period size: 190 Copynumber: 2.4 Consensus size: 188 57268768 ATTCAGCCAA * * * 57268778 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGCGAAAGTGTATATGTGTGA 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA * * 57268843 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGAT 66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT 57268908 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT 131 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT * * 57268968 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 57269033 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT 66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT * * 57269098 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT 131 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT * * * * * * * * * 57269156 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA 1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA 57269221 TAAG 66 TAAG 57269225 TCCCGAAGGG Statistics Matches: 237, Mismatches: 20, Indels: 2 0.92 0.08 0.01 Matches are distributed among these distances: 188 96 0.41 190 141 0.59 ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29 Consensus pattern (188 bp): GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT Found at i:57269398 original size:36 final size:37 Alignment explanation
Indices: 57269343--57269420 Score: 106 Period size: 36 Copynumber: 2.1 Consensus size: 37 57269333 CCGAGCTCTA * * 57269343 AAGACCCGATGACTACGTGTGG-GAATTTTGTCC-GGT 1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT * 57269379 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT 1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT 57269416 AAGAC 1 AAGAC 57269421 TTCGTAATAA Statistics Matches: 37, Mismatches: 3, Indels: 3 0.86 0.07 0.07 Matches are distributed among these distances: 36 28 0.76 37 9 0.24 ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26 Consensus pattern (37 bp): AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT Found at i:57274973 original size:39 final size:39 Alignment explanation
Indices: 57274928--57275048 Score: 224 Period size: 39 Copynumber: 3.1 Consensus size: 39 57274918 AAGAAAGGCA * 57274928 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 57274967 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG * 57275006 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 57275045 CTGG 1 CTGG 57275049 TAACATAATT Statistics Matches: 80, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 39 80 1.00 ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23 Consensus pattern (39 bp): CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG Found at i:57279494 original size:47 final size:47 Alignment explanation
Indices: 57279440--57280177 Score: 1296 Period size: 47 Copynumber: 15.6 Consensus size: 47 57279430 TATTTGAATA 57279440 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * * 57279487 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * 57279534 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * 57279581 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 57279628 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * 57279675 AATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 57279722 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * 57279769 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 57279816 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG 57279865 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG 57279914 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 57279963 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 57280010 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * 57280057 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * * * * * 57280104 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG 1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG * * 57280151 GATGTGAAAGTGTATAAATGTGATAAG 1 AATGTGAAAGTGTATATATGTGATAAG 57280178 TCCCGAAGGG Statistics Matches: 665, Mismatches: 22, Indels: 8 0.96 0.03 0.01 Matches are distributed among these distances: 47 526 0.79 49 136 0.20 51 3 0.00 ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30 Consensus pattern (47 bp): AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG Found at i:57283066 original size:48 final size:46 Alignment explanation
Indices: 57282959--57283170 Score: 153 Period size: 46 Copynumber: 4.5 Consensus size: 46 57282949 TATGTGTGCT * * * 57282959 AGTGTAAGACATGTCTTGGACATGCATCAGCCAC-A-ACATGAGAGCC 1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAT-A-AGCC * 57283005 AATGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTAAGCC 1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA--TAAGCC * * * ** * * * * * 57283053 AGTGTAAGACATGTATGGTACATACATTGGCATTGAGACGA-GAGCT 1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA-TATAAGCC * * * * 57283099 AGTGTAAGACATGTCTGGGACATGTATC-GACCTTGCGATATACAACC 1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCTCGAGATATA-AGCC * 57283146 TAGTGTAAGACCTGTCTGGGACATG 1 -AGTGTAAGACATGTCTGGGACATG 57283171 GCGTCAGCTT Statistics Matches: 130, Mismatches: 27, Indels: 16 0.75 0.16 0.09 Matches are distributed among these distances: 45 2 0.02 46 63 0.48 47 3 0.02 48 59 0.45 49 2 0.02 50 1 0.01 ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25 Consensus pattern (46 bp): AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAGCC Found at i:57283262 original size:49 final size:49 Alignment explanation
Indices: 57283190--57283312 Score: 142 Period size: 49 Copynumber: 2.5 Consensus size: 49 57283180 TGTTGTGTGT * * * 57283190 CAGTGTAAGACTTATCTGGGACATGGCATCGACAC-CAATAGATGAGAA-C 1 CAGTGTAAGACCTGTTTGGGACATGGCATCGAC-CTCAATAGATGA-AAGC * * * * 57283239 CAGTGTAAGACCTGTTTAGGACATGGCATCGGCCTCACTATATGAAAGC 1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACCTCAATAGATGAAAGC 57283288 CAGTGTAAGACCATGTTTGGGACAT 1 CAGTGTAAGACC-TGTTTGGGACAT 57283313 AGTGTCAGCA Statistics Matches: 63, Mismatches: 8, Indels: 5 0.83 0.11 0.07 Matches are distributed among these distances: 48 3 0.05 49 49 0.78 50 11 0.17 ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24 Consensus pattern (49 bp): CAGTGTAAGACCTGTTTGGGACATGGCATCGACCTCAATAGATGAAAGC Found at i:57284698 original size:14 final size:14 Alignment explanation
Indices: 57284681--57284709 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 57284671 GACATCGGAA 57284681 TAATTGTATGCATG 1 TAATTGTATGCATG 57284695 TAATTGTATGCATG 1 TAATTGTATGCATG 57284709 T 1 T 57284710 GATTAAATAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45 Consensus pattern (14 bp): TAATTGTATGCATG Found at i:57292694 original size:14 final size:14 Alignment explanation
Indices: 57292677--57292752 Score: 52 Period size: 14 Copynumber: 5.3 Consensus size: 14 57292667 CTCACTTTCT * 57292677 TTTTCTTTTTCATCT 1 TTTTCTTTTTC-TCA 57292692 TTTTC-TTTTCTCA 1 TTTTCTTTTTCTCA 57292705 TTTTCTTTTCACTCTC- 1 TTTTCTTTT---TCTCA * 57292721 TTTTGCTATTTTTTC- 1 TTTT-CT-TTTTCTCA 57292736 -TTTCTTTTTCTCA 1 TTTTCTTTTTCTCA 57292749 TTTT 1 TTTT 57292753 TTTGTCTTTC Statistics Matches: 50, Mismatches: 3, Indels: 17 0.71 0.04 0.24 Matches are distributed among these distances: 12 6 0.12 13 9 0.18 14 14 0.28 15 8 0.16 16 4 0.08 17 6 0.12 18 3 0.06 ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71 Consensus pattern (14 bp): TTTTCTTTTTCTCA Found at i:57292694 original size:15 final size:14 Alignment explanation
Indices: 57292674--57292753 Score: 58 Period size: 13 Copynumber: 5.5 Consensus size: 14 57292664 TTTCTCACTT 57292674 TCTTTTTCTTTTTC 1 TCTTTTTCTTTTTC 57292688 ATCTTTTTC-TTTTC 1 -TCTTTTTCTTTTTC * 57292702 TCATTTTCTTTTCACTC 1 TCTTTTTCTTTT---TC * 57292719 TCTTTTGCTATTTT- 1 TCTTTTTCT-TTTTC * 57292733 T-TCTTTCTTTTTC 1 TCTTTTTCTTTTTC 57292746 TCATTTTT 1 TC-TTTTT 57292754 TTGTCTTTCA Statistics Matches: 51, Mismatches: 6, Indels: 16 0.70 0.08 0.22 Matches are distributed among these distances: 12 4 0.08 13 13 0.25 14 9 0.18 15 13 0.25 17 9 0.18 18 3 0.06 ACGTcount: A:0.06, C:0.21, G:0.01, T:0.71 Consensus pattern (14 bp): TCTTTTTCTTTTTC Found at i:57292705 original size:16 final size:15 Alignment explanation
Indices: 57292674--57292713 Score: 57 Period size: 14 Copynumber: 2.8 Consensus size: 15 57292664 TTTCTCACTT 57292674 TCTTTTTCTTTTTCA 1 TCTTTTTCTTTTTCA 57292689 TCTTTTTC-TTTTC- 1 TCTTTTTCTTTTTCA * 57292702 TCATTTTCTTTT 1 TCTTTTTCTTTT 57292714 CACTCTCTTT Statistics Matches: 23, Mismatches: 1, Indels: 3 0.85 0.04 0.11 Matches are distributed among these distances: 13 7 0.30 14 8 0.35 15 8 0.35 ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75 Consensus pattern (15 bp): TCTTTTTCTTTTTCA Found at i:57292723 original size:45 final size:44 Alignment explanation
Indices: 57292668--57292752 Score: 109 Period size: 45 Copynumber: 1.9 Consensus size: 44 57292658 ACTCATTTTC * * * 57292668 TCACTTTCTTTTTCT-TTTTCATCTTTTTCTTTTCTCATTTTCTTT 1 TCACTCTCTTTTGCTATTTT-ATCTTTCT-TTTTCTCATTTTCTTT * 57292713 TCACTCTCTTTTGCTATTTTTTCTTTCTTTTTCTCATTTT 1 TCACTCTCTTTTGCTATTTTATCTTTCTTTTTCTCATTTT 57292753 TTTGTCTTTC Statistics Matches: 35, Mismatches: 4, Indels: 3 0.83 0.10 0.07 Matches are distributed among these distances: 44 12 0.34 45 19 0.54 46 4 0.11 ACGTcount: A:0.07, C:0.22, G:0.01, T:0.69 Consensus pattern (44 bp): TCACTCTCTTTTGCTATTTTATCTTTCTTTTTCTCATTTTCTTT Found at i:57292760 original size:19 final size:19 Alignment explanation
Indices: 57292719--57292761 Score: 52 Period size: 19 Copynumber: 2.3 Consensus size: 19 57292709 CTTTTCACTC * 57292719 TCTTTTGCTATTTTTTCTT 1 TCTTTTGCTATTTTTTCTG * 57292738 TCTTTTTCTCATTTTTT-TG 1 TCTTTTGCT-ATTTTTTCTG 57292757 TCTTT 1 TCTTT 57292762 CACTTTTACA Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 19 14 0.67 20 7 0.33 ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74 Consensus pattern (19 bp): TCTTTTGCTATTTTTTCTG Found at i:57292768 original size:44 final size:43 Alignment explanation
Indices: 57292693--57292793 Score: 109 Period size: 44 Copynumber: 2.3 Consensus size: 43 57292683 TTTTCATCTT * * 57292693 TTTCTTTTCTCATTTTCTTTTCACTCTCTTTTGCTATT-TTTTC 1 TTTCTTTTCTCATTTTCTTTTCACTCACTTTTAC-ATTCTTTTC ** 57292736 TTTCTTTTTCTCATTTT-TTTGTCTTTCACTTTTACATTCTTTTC 1 TTTC-TTTTCTCATTTTCTTT-TCACTCACTTTTACATTCTTTTC * 57292780 TTT-TTCTCTCATTT 1 TTTCTTTTCTCATTT 57292794 GTTCTATAGA Statistics Matches: 50, Mismatches: 5, Indels: 7 0.81 0.08 0.11 Matches are distributed among these distances: 42 10 0.20 43 10 0.20 44 30 0.60 ACGTcount: A:0.08, C:0.22, G:0.02, T:0.68 Consensus pattern (43 bp): TTTCTTTTCTCATTTTCTTTTCACTCACTTTTACATTCTTTTC Found at i:57294497 original size:43 final size:45 Alignment explanation
Indices: 57294444--57294577 Score: 146 Period size: 43 Copynumber: 2.9 Consensus size: 45 57294434 GAGATATGTG * * * 57294444 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGTTGCG-A- 1 GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCGTAT * * * 57294487 GCATCTGAGCTCGTTGAGTGGTTTGAGTTCATGATGGATGCGATTCAT 1 GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCG--T-AT 57294535 GTAACATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATG 1 G---CATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATG 57294578 TGTTACATGT Statistics Matches: 74, Mismatches: 9, Indels: 8 0.81 0.10 0.09 Matches are distributed among these distances: 43 36 0.49 47 1 0.01 48 1 0.01 51 36 0.49 ACGTcount: A:0.20, C:0.16, G:0.31, T:0.32 Consensus pattern (45 bp): GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCGTAT Found at i:57301582 original size:62 final size:63 Alignment explanation
Indices: 57301404--57301582 Score: 186 Period size: 62 Copynumber: 2.8 Consensus size: 63 57301394 TAGTTCGGCT * * * * 57301404 CTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGC 1 CTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCGTAGC * * * * 57301466 TCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCGTA 1 -CTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTA 57301531 G- 62 GC * * 57301532 CTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT 1 CTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT 57301583 CATAATGTCT Statistics Matches: 96, Mismatches: 14, Indels: 13 0.78 0.11 0.11 Matches are distributed among these distances: 62 29 0.30 63 15 0.16 65 17 0.18 66 23 0.24 67 10 0.10 68 2 0.02 ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30 Consensus pattern (63 bp): CTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTAGC Found at i:57309532 original size:47 final size:47 Alignment explanation
Indices: 57309457--57309672 Score: 260 Period size: 47 Copynumber: 4.6 Consensus size: 47 57309447 ATATTTGAGT * 57309457 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA * * * * * * 57309504 TCCGAGCTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCAA--ATG-- 1 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA * * * 57309550 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA * * 57309597 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCGTGAAATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA * 57309644 TCCGAACTCGTTGAGTTGAGTCCGAGTTC 1 TCCGAACTCGTTGAGTTGAGTCCAAGTTC 57309673 ACTTATGGGC Statistics Matches: 139, Mismatches: 23, Indels: 14 0.79 0.13 0.08 Matches are distributed among these distances: 43 6 0.04 45 3 0.02 46 25 0.18 47 95 0.68 48 4 0.03 50 6 0.04 ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29 Consensus pattern (47 bp): TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA Found at i:57319444 original size:12 final size:12 Alignment explanation
Indices: 57319427--57319460 Score: 59 Period size: 12 Copynumber: 2.8 Consensus size: 12 57319417 GGTGCTTGAG 57319427 AAGCCTGGGTTC 1 AAGCCTGGGTTC 57319439 AAGCCTGGGTTC 1 AAGCCTGGGTTC * 57319451 AAGTCTGGGT 1 AAGCCTGGGT 57319461 GTTTGGAAAA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 12 21 1.00 ACGTcount: A:0.18, C:0.21, G:0.35, T:0.26 Consensus pattern (12 bp): AAGCCTGGGTTC Found at i:57321501 original size:27 final size:26 Alignment explanation
Indices: 57321465--57321610 Score: 114 Period size: 27 Copynumber: 5.4 Consensus size: 26 57321455 AGGCCCCAAT 57321465 TTGTAAAATTACCAAAATACCCTCGAA 1 TTGTAAAATTA-CAAAATACCCTCGAA * * * * * 57321492 TTGTAAAATTATAGAAATGCCTTTGAT 1 TTGTAAAATTACA-AAATACCCTCGAA ** * 57321519 TTGTAAAATTATTGAAATACCCTCAAA 1 TTGTAAAATTA-CAAAATACCCTCGAA * 57321546 TTGTAAAATTACAGAAATACCC-CTGAT 1 TTGTAAAATTACA-AAATACCCTC-GAA * * * 57321573 TTGTAAAATTACCAAAATATCCTTGTA 1 TTGTAAAATTA-CAAAATACCCTCGAA * 57321600 GTGTAAAATTA 1 TTGTAAAATTA 57321611 TTGAAATACC Statistics Matches: 93, Mismatches: 20, Indels: 12 0.74 0.16 0.10 Matches are distributed among these distances: 26 2 0.02 27 88 0.95 28 3 0.03 ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34 Consensus pattern (26 bp): TTGTAAAATTACAAAATACCCTCGAA Found at i:57321605 original size:54 final size:54 Alignment explanation
Indices: 57321463--57321621 Score: 201 Period size: 54 Copynumber: 2.9 Consensus size: 54 57321453 TAAGGCCCCA * ** 57321463 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATGCCTTTG 1 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCCCTG *** * * 57321517 ATTTGTAAAATTATTGAAATACCCTCAAATTGTAAAATTACAGAAATACCCCTG 1 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCCCTG * * * * * 57321571 ATTTGTAAAATTACCAAAATATCCTTGTAGTGTAAAATTATTGAAATACCC 1 ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCC 57321622 TTGTAGGGTA Statistics Matches: 87, Mismatches: 18, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 54 87 1.00 ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33 Consensus pattern (54 bp): ATTTGTAAAATTACCAAAATACCCTCGAATTGTAAAATTATAGAAATACCCCTG Found at i:57321617 original size:27 final size:27 Alignment explanation
Indices: 57321466--57321635 Score: 103 Period size: 27 Copynumber: 6.3 Consensus size: 27 57321456 GGCCCCAATT ** * * * 57321466 TGTAAAATTACCAAAATACCCTCGAAT 1 TGTAAAATTACTGAAATACCCTTGTAG * * * 57321493 TGTAAAATTA-TAGAAATGCCTTTG-ATT 1 TGTAAAATTACT-GAAATACCCTTGTA-G * *** * 57321520 TGTAAAATTATTGAAATACCCTCAAAT 1 TGTAAAATTACTGAAATACCCTTGTAG * * * 57321547 TGTAAAATTACAGAAATACCCCTG-ATT 1 TGTAAAATTACTGAAATACCCTTGTA-G ** * 57321574 TGTAAAATTACCAAAATATCCTTGTAG 1 TGTAAAATTACTGAAATACCCTTGTAG * 57321601 TGTAAAATTATTGAAATACCCTTGTAG 1 TGTAAAATTACTGAAATACCCTTGTAG * 57321628 GGTAAAAT 1 TGTAAAAT 57321636 GATTATTTTG Statistics Matches: 113, Mismatches: 24, Indels: 12 0.76 0.16 0.08 Matches are distributed among these distances: 26 2 0.02 27 108 0.96 28 3 0.03 ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33 Consensus pattern (27 bp): TGTAAAATTACTGAAATACCCTTGTAG Found at i:57322027 original size:27 final size:27 Alignment explanation
Indices: 57321997--57322081 Score: 82 Period size: 27 Copynumber: 3.1 Consensus size: 27 57321987 GTGCTAATTG * 57321997 TATTTACTTGTGGCTATGTGTCTATCA 1 TATTTACTTGTGGCTATGTGTCGATCA * * * 57322024 TATTTA-TTGATGACTCTGTGTCGAACA 1 TATTTACTTG-TGGCTATGTGTCGATCA *** * 57322051 TATTTACCCATGGCTGTGTGTCGATCA 1 TATTTACTTGTGGCTATGTGTCGATCA 57322078 TATT 1 TATT 57322082 ACAACTACTA Statistics Matches: 46, Mismatches: 10, Indels: 4 0.77 0.17 0.07 Matches are distributed among these distances: 26 3 0.07 27 43 0.93 ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44 Consensus pattern (27 bp): TATTTACTTGTGGCTATGTGTCGATCA Found at i:57322115 original size:32 final size:32 Alignment explanation
Indices: 57322060--57322131 Score: 90 Period size: 32 Copynumber: 2.2 Consensus size: 32 57322050 ATATTTACCC * * 57322060 ATGGCTGTGTGTCGATCATATTACAACTACTA 1 ATGGCTGTGTGCCGATCAAATTACAACTACTA * * ** 57322092 ATGGCTTTGTGCCTATCAAATTACTGCTACTA 1 ATGGCTGTGTGCCGATCAAATTACAACTACTA 57322124 ATGGCTGT 1 ATGGCTGT 57322132 AAGTCATGTA Statistics Matches: 33, Mismatches: 7, Indels: 0 0.82 0.17 0.00 Matches are distributed among these distances: 32 33 1.00 ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36 Consensus pattern (32 bp): ATGGCTGTGTGCCGATCAAATTACAACTACTA Found at i:57322396 original size:28 final size:28 Alignment explanation
Indices: 57322364--57322419 Score: 85 Period size: 28 Copynumber: 2.0 Consensus size: 28 57322354 CTGATTCTGA * * * 57322364 TACTATATTGGGCTTAGGCCCACACTGT 1 TACTACATTGGGCTAAGACCCACACTGT 57322392 TACTACATTGGGCTAAGACCCACACTGT 1 TACTACATTGGGCTAAGACCCACACTGT 57322420 GCTGTTACTA Statistics Matches: 25, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 28 25 1.00 ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29 Consensus pattern (28 bp): TACTACATTGGGCTAAGACCCACACTGT Found at i:57335963 original size:49 final size:50 Alignment explanation
Indices: 57335898--57336142 Score: 208 Period size: 49 Copynumber: 4.9 Consensus size: 50 57335888 TAGACAAGGC * * * 57335898 TATCTAGTACACATAGTAGCCTACACTTAGTACTACACATGCGA-CAAAT 1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT * * * * 57335947 TATCCAGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAAC 1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT * * * * * * * * * 57335997 CAT-CTGATTCACGTAGTAGCTTGCACTTAGTACTACGCACGTGATCGAAGT 1 TATCCAG-TACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAAAT *** ** * * 57336048 TATTGGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT 1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT * * * * 57336097 TATCCGGTACACGTAGCAGCCTGCACTTAGTACTACACACGTGACC 1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC 57336143 TCACAATAGA Statistics Matches: 153, Mismatches: 39, Indels: 8 0.76 0.19 0.04 Matches are distributed among these distances: 49 82 0.54 50 38 0.25 51 32 0.21 52 1 0.01 ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26 Consensus pattern (50 bp): TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAAT Found at i:57336138 original size:100 final size:101 Alignment explanation
Indices: 57335959--57336140 Score: 249 Period size: 100 Copynumber: 1.8 Consensus size: 101 57335949 TCCAGTACAC ** * * * * 57335959 ATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATTCACGTAGTAGCTTGCACT 1 ATAGTAGCCTACACTTAGTACTACACACGCAACCTAACCATCCGATACACGTAGCAGCCTGCACT * 57336024 TAGTACTACGCACGTGATCGAAGTTATTGGGTACGT 66 TAGTACTACACACGTGATCGAAGTTATTGGGTACGT * * ** * 57336060 ATAGTAGCCTGCACTTAGTACTACACATGCAACC-AATTATCCGGTACACGTAGCAGCCTGCACT 1 ATAGTAGCCTACACTTAGTACTACACACGCAACCTAACCATCCGATACACGTAGCAGCCTGCACT 57336124 TAGTACTACACACGTGA 66 TAGTACTACACACGTGA 57336141 CCTCACAATA Statistics Matches: 69, Mismatches: 12, Indels: 1 0.84 0.15 0.01 Matches are distributed among these distances: 100 39 0.57 101 30 0.43 ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26 Consensus pattern (101 bp): ATAGTAGCCTACACTTAGTACTACACACGCAACCTAACCATCCGATACACGTAGCAGCCTGCACT TAGTACTACACACGTGATCGAAGTTATTGGGTACGT Found at i:57342011 original size:49 final size:49 Alignment explanation
Indices: 57341829--57342027 Score: 236 Period size: 50 Copynumber: 4.0 Consensus size: 49 57341819 GTAGCCTGCA * * * 57341829 GACCAATTATCCGGTACACGTAGTAGCCTGGATTTAGTACTACACACGT 1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT ** * * * * 57341878 GACCTAACCATCTGATACACGTAGCAGCCTGCACTTAGTACTACACACGT 1 GACC-AATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT * ** * * * 57341928 GATCGAAGTTATTGGGTACACATAGTAGCCTGCACTTAGTAATACACATGC 1 GA-CCAA-TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT 57341979 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT 1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT 57342028 AACCTCACAA Statistics Matches: 123, Mismatches: 24, Indels: 6 0.80 0.16 0.04 Matches are distributed among these distances: 49 42 0.34 50 45 0.37 51 36 0.29 ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25 Consensus pattern (49 bp): GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT Found at i:57346096 original size:55 final size:56 Alignment explanation
Indices: 57346009--57346144 Score: 211 Period size: 55 Copynumber: 2.4 Consensus size: 56 57345999 GACCATGGCA * * 57346009 TCGATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCAATATGTTATT 1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATT * * 57346065 TTGATATATGTGTG-GAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT 1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATT * * 57346120 TCGTTATATGTGTGCGAGTAGGACC 1 TCGATATATGTGTGCGAGTAAGACC 57346145 TTGTTTGGGA Statistics Matches: 72, Mismatches: 7, Indels: 2 0.89 0.09 0.02 Matches are distributed among these distances: 55 50 0.69 56 22 0.31 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35 Consensus pattern (56 bp): TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATT Found at i:57347315 original size:46 final size:46 Alignment explanation
Indices: 57347261--57347624 Score: 529 Period size: 46 Copynumber: 8.0 Consensus size: 46 57347251 GCTCTCTAAA 57347261 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT 1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT 57347307 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT 1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT * * * 57347353 ATGAAATGTGTAAGACAATGGTT-AAAGATACCATGGCAACGTGAC 1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT ** * 57347398 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAT 1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT * 57347443 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT 1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT * 57347489 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT 1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT *** * 57347535 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC 1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT * * * * * 57347581 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG 1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG 57347625 TCAAAGATAA Statistics Matches: 291, Mismatches: 22, Indels: 10 0.90 0.07 0.03 Matches are distributed among these distances: 44 13 0.04 45 54 0.19 46 223 0.77 47 1 0.00 ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22 Consensus pattern (46 bp): ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT Found at i:57350463 original size:27 final size:28 Alignment explanation
Indices: 57350424--57350481 Score: 82 Period size: 27 Copynumber: 2.1 Consensus size: 28 57350414 CATCACACAG 57350424 GGGCAAAACAGTCATCTTACCATATA-A 1 GGGCAAAACAGTCATCTTACCATATATA * * * 57350451 GGGCAAAATAGTCATTTTATCATATATA 1 GGGCAAAACAGTCATCTTACCATATATA 57350479 GGG 1 GGG 57350482 GATCTAGGTA Statistics Matches: 27, Mismatches: 3, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 27 23 0.85 28 4 0.15 ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28 Consensus pattern (28 bp): GGGCAAAACAGTCATCTTACCATATATA Found at i:57354258 original size:42 final size:42 Alignment explanation
Indices: 57354197--57354308 Score: 120 Period size: 42 Copynumber: 2.6 Consensus size: 42 57354187 GACTTCTATT * 57354197 TTATGTGTAAGACCATGTCTGGGACGTCGACATCG-TATTTGA 1 TTATGTGTAAGACCCTGTCTGGGACGT-GACATCGATATTTGA * * * * 57354239 TTTTGTGTAAGACCCTGTCTAGGACAGTGGCATCGATGTTTGA 1 TTATGTGTAAGACCCTGTCTGGGAC-GTGACATCGATATTTGA ** 57354282 TTACATGTAAGACCAC-GTCTGGGACGT 1 TTATGTGTAAGACC-CTGTCTGGGACGT 57354309 TGGCATTGTA Statistics Matches: 58, Mismatches: 9, Indels: 6 0.79 0.12 0.08 Matches are distributed among these distances: 42 30 0.52 43 27 0.47 44 1 0.02 ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32 Consensus pattern (42 bp): TTATGTGTAAGACCCTGTCTGGGACGTGACATCGATATTTGA Found at i:57354313 original size:43 final size:42 Alignment explanation
Indices: 57354202--57354314 Score: 113 Period size: 43 Copynumber: 2.7 Consensus size: 42 57354192 CTATTTTATG * * * *** 57354202 TGTAAGACCATGTCTGGGACGTCGACATCGTATTTGATTTTG 1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA * * 57354244 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGATGTTTGATTACA 1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTACA 57354287 TGTAAGACCACGTCTGGGACGTTGGCAT 1 TGTAAGACCACGTCTGGGACGTTGGCAT 57354315 TGTAAATGTT Statistics Matches: 57, Mismatches: 9, Indels: 9 0.76 0.12 0.12 Matches are distributed among these distances: 42 24 0.42 43 32 0.56 44 1 0.02 ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31 Consensus pattern (42 bp): TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA Found at i:57355000 original size:66 final size:66 Alignment explanation
Indices: 57354924--57355056 Score: 257 Period size: 66 Copynumber: 2.0 Consensus size: 66 57354914 GAATGATGTA * 57354924 TTGATCATATGTTTAGGTATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT 1 TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT 57354989 T 66 T 57354990 TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT 1 TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT 57355055 T 66 T 57355056 T 1 T 57355057 GAAATGATTG Statistics Matches: 66, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 66 66 1.00 ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48 Consensus pattern (66 bp): TTGATCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGAT T Found at i:57355972 original size:38 final size:38 Alignment explanation
Indices: 57355921--57356035 Score: 194 Period size: 38 Copynumber: 3.0 Consensus size: 38 57355911 CTCCAAAATG 57355921 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT 1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT * 57355959 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGTTT 1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT * * * 57355997 TCGTCTTCCATATTCTTGACACTTAGGTTTGTTGGCTT 1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT 57356035 T 1 T 57356036 GGCACTACCA Statistics Matches: 72, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 38 72 1.00 ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45 Consensus pattern (38 bp): TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT Found at i:57359466 original size:46 final size:46 Alignment explanation
Indices: 57359416--57359591 Score: 199 Period size: 46 Copynumber: 3.8 Consensus size: 46 57359406 TGTTTGGGCA * 57359416 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG * *** * ** ** * 57359462 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG * ** 57359509 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG * * 57359555 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 57359592 GCAGGTTACA Statistics Matches: 104, Mismatches: 25, Indels: 2 0.79 0.19 0.02 Matches are distributed among these distances: 46 70 0.67 47 34 0.33 ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG Found at i:57359571 original size:93 final size:93 Alignment explanation
Indices: 57359412--57359583 Score: 281 Period size: 93 Copynumber: 1.8 Consensus size: 93 57359402 AGGATGTTTG * * * 57359412 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG * 57359477 TTGAGTCTGAGTTCGAGAGATGTAACTA 66 TTGAGTCCGAGTTCGAGAGATGTAACTA * * * 57359505 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG 57359570 TTGAGTCCGAGTTC 66 TTGAGTCCGAGTTC 57359584 ACTTATGGGC Statistics Matches: 72, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 93 72 1.00 ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGAGAGATGTAACTA Found at i:57363088 original size:56 final size:56 Alignment explanation
Indices: 57362924--57363090 Score: 244 Period size: 56 Copynumber: 3.0 Consensus size: 56 57362914 TCTTACATGT * * * * * 57362924 AATCACATATCGATGCCAATGTACTAGATGTGGTCTTACTCGCACACATATACCAG 1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG * * * 57362980 AATCATATATCAATGCCAACGTATTAAATGTTGTCTTACTCGCACACATATATCGG 1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG * * 57363036 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACATATATCG 1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCG 57363091 ATGCCATGGT Statistics Matches: 98, Mismatches: 13, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 56 98 1.00 ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29 Consensus pattern (56 bp): AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG Found at i:57381712 original size:49 final size:49 Alignment explanation
Indices: 57381527--57381725 Score: 245 Period size: 50 Copynumber: 4.0 Consensus size: 49 57381517 GTAGCCTGCA * * * 57381527 GACCAATTATCCGGTACACGTAGTAGCCTGGATTTAGTACTACACACGT 1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT ** * * * 57381576 GACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT 1 GACC-AATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT * ** * * * 57381626 GATCGAAGTTATTGGGTACACATAGTAGCCTGCACTTAGTAATACACATGC 1 GA-CCAA-TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT 57381677 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT 1 GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT 57381726 AACCTCACAA Statistics Matches: 125, Mismatches: 22, Indels: 6 0.82 0.14 0.04 Matches are distributed among these distances: 49 42 0.34 50 46 0.37 51 37 0.30 ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26 Consensus pattern (49 bp): GACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT Found at i:57385807 original size:55 final size:56 Alignment explanation
Indices: 57385722--57385854 Score: 205 Period size: 55 Copynumber: 2.4 Consensus size: 56 57385712 CATGGCATCA * * * * 57385722 ATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCGATATGTTATTTTG 1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG 57385778 ATATATGTGTG-GAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG 1 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG * * 57385833 TTATATGTGTGCGAGTAGGACC 1 ATATATGTGTGCGAGTAAGACC 57385855 TTGTTTGGGA Statistics Matches: 70, Mismatches: 6, Indels: 2 0.90 0.08 0.03 Matches are distributed among these distances: 55 50 0.71 56 20 0.29 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35 Consensus pattern (56 bp): ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTTCG Found at i:57390504 original size:43 final size:42 Alignment explanation
Indices: 57390456--57390546 Score: 121 Period size: 43 Copynumber: 2.1 Consensus size: 42 57390446 CGTATCCATC * * * 57390456 ATGAACTTGGACCACTCAACGAGCTC-GAATGCTCACATCTATA 1 ATGAACTCGGACCACTCAACAAGCTCAG-ATGC-CACATATATA * 57390499 ATGAACTCGGACCACTCAACAAGCTCAGATGCCACATATATC 1 ATGAACTCGGACCACTCAACAAGCTCAGATGCCACATATATA 57390541 ATGAAC 1 ATGAAC 57390547 CCAGACCATT Statistics Matches: 43, Mismatches: 4, Indels: 3 0.86 0.08 0.06 Matches are distributed among these distances: 42 14 0.33 43 28 0.65 44 1 0.02 ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21 Consensus pattern (42 bp): ATGAACTCGGACCACTCAACAAGCTCAGATGCCACATATATA Found at i:57390554 original size:42 final size:43 Alignment explanation
Indices: 57390465--57390559 Score: 113 Period size: 42 Copynumber: 2.2 Consensus size: 43 57390455 CATGAACTTG * * * * 57390465 GACCACTCAACGAGCTCGAATGCTCACATCTATAATGAACTCG 1 GACCACTCAACAAGCTCGAATGCTCACATATATAATGAACCCA * 57390508 GACCACTCAACAAGCTC-AGATGC-CACATATATCATGAACCCA 1 GACCACTCAACAAGCTCGA-ATGCTCACATATATAATGAACCCA * 57390550 GACCATTCAA 1 GACCACTCAA 57390560 TGAGTTCAGA Statistics Matches: 45, Mismatches: 6, Indels: 3 0.83 0.11 0.06 Matches are distributed among these distances: 42 25 0.56 43 20 0.44 ACGTcount: A:0.36, C:0.32, G:0.14, T:0.19 Consensus pattern (43 bp): GACCACTCAACAAGCTCGAATGCTCACATATATAATGAACCCA Found at i:57399226 original size:49 final size:48 Alignment explanation
Indices: 57399154--57399339 Score: 219 Period size: 49 Copynumber: 3.8 Consensus size: 48 57399144 TGAGGTCACG * 57399154 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-AATTGGTCGCA * * ** * * * 57399203 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTGAAAACTGTGATCACG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-AAA-T-TGGTCGCA * * 57399254 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAATATTGGTTGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAA-ATTGGTCGCA * * 57399303 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA 57399340 TAGCTTCGGC Statistics Matches: 114, Mismatches: 19, Indels: 8 0.81 0.13 0.06 Matches are distributed among these distances: 49 72 0.63 50 5 0.04 51 37 0.32 ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29 Consensus pattern (48 bp): TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAATTGGTCGCA Found at i:57399322 original size:100 final size:100 Alignment explanation
Indices: 57399149--57399335 Score: 331 Period size: 100 Copynumber: 1.9 Consensus size: 100 57399139 TATTGTGAGG * * 57399149 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCATGTGTAGTACT 57399214 AAGTGCAGGCTACTATGCGTACTTGAAAACTGTGA 66 AAGTGCAGGCTACTATGCGTACTTGAAAACTGTGA * 57399249 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAT-ATTGGTTGCATGTGTAGTAC 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACC-GAATAATTGGTCGCATGTGTAGTAC 57399313 TAAGTGCAGGCTACTATGCGTAC 65 TAAGTGCAGGCTACTATGCGTAC 57399336 CAGATAGCTT Statistics Matches: 83, Mismatches: 3, Indels: 2 0.94 0.03 0.02 Matches are distributed among these distances: 100 80 0.96 101 3 0.04 ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29 Consensus pattern (100 bp): TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCATGTGTAGTACT AAGTGCAGGCTACTATGCGTACTTGAAAACTGTGA Found at i:57404690 original size:40 final size:41 Alignment explanation
Indices: 57404635--57404731 Score: 119 Period size: 40 Copynumber: 2.4 Consensus size: 41 57404625 TGACTATGCT * 57404635 TGGCACTAAGTGTGCG-GTTTAATATAGCTCCGGCTACA-AA 1 TGGCACTAAGTGTGCGAGTTGAA-ATAGCTCCGGCTACATAA * * * 57404675 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTATATAA 1 TGGCACTAAGTGTGCGAGTTGAAATAGCTCCGGCTACATAA * 57404716 -GGAACTAAGTGTGCGA 1 TGGCACTAAGTGTGCGA 57404732 TACCAATTTA Statistics Matches: 50, Mismatches: 5, Indels: 4 0.85 0.08 0.07 Matches are distributed among these distances: 40 44 0.88 41 6 0.12 ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27 Consensus pattern (41 bp): TGGCACTAAGTGTGCGAGTTGAAATAGCTCCGGCTACATAA Found at i:57406234 original size:13 final size:13 Alignment explanation
Indices: 57406216--57406241 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 57406206 ACAAAAAATC 57406216 AGCACTGATTGAG 1 AGCACTGATTGAG 57406229 AGCACTGATTGAG 1 AGCACTGATTGAG 57406242 TTTTCAATTC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23 Consensus pattern (13 bp): AGCACTGATTGAG Found at i:57412733 original size:27 final size:27 Alignment explanation
Indices: 57412703--57412764 Score: 88 Period size: 27 Copynumber: 2.3 Consensus size: 27 57412693 TATACATCAC 57412703 ATAAGGGCAAAACAGTCATCTTACCAT 1 ATAAGGGCAAAACAGTCATCTTACCAT * * * 57412730 ATAAGGGCAAAATAGTCATTTTATCAT 1 ATAAGGGCAAAACAGTCATCTTACCAT 57412757 ATATAGGG 1 ATA-AGGG 57412765 GGTCTAGGTA Statistics Matches: 31, Mismatches: 3, Indels: 1 0.89 0.09 0.03 Matches are distributed among these distances: 27 27 0.87 28 4 0.13 ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27 Consensus pattern (27 bp): ATAAGGGCAAAACAGTCATCTTACCAT Found at i:57414200 original size:27 final size:28 Alignment explanation
Indices: 57414169--57414230 Score: 74 Period size: 27 Copynumber: 2.3 Consensus size: 28 57414159 TTAGTTTACC * * 57414169 AAATTACTGAAA-TACCCTCAAATTGTA 1 AAATTACTCAAAGTACCCTCAAATTATA * * 57414196 AAATTAC-CAAAGTACCCTCGATTTATA 1 AAATTACTCAAAGTACCCTCAAATTATA 57414223 AAATTACT 1 AAATTACT 57414231 ATTTTACCCT Statistics Matches: 29, Mismatches: 4, Indels: 3 0.81 0.11 0.08 Matches are distributed among these distances: 26 3 0.10 27 26 0.90 ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31 Consensus pattern (28 bp): AAATTACTCAAAGTACCCTCAAATTATA Found at i:57414238 original size:27 final size:27 Alignment explanation
Indices: 57414208--57414364 Score: 170 Period size: 27 Copynumber: 5.8 Consensus size: 27 57414198 ATTACCAAAG * * 57414208 TACCCTCGATTTATAAAATTACTATTT 1 TACCCTCGATTTACAAAATTACTGTTT * * * 57414235 TACCCTCGATTTATAGAATTACCGTTT 1 TACCCTCGATTTACAAAATTACTGTTT * * * 57414262 TACCCTCGATTTATAGAATTATTGTTT 1 TACCCTCGATTTACAAAATTACTGTTT * * 57414289 TACCCTTGATTTACAGAATTACTGTTT 1 TACCCTCGATTTACAAAATTACTGTTT * **** 57414316 TACCCTCTATTTACAAAATTACTAAAA 1 TACCCTCGATTTACAAAATTACTGTTT * 57414343 TACCCTCGGTTTACAAAATTAC 1 TACCCTCGATTTACAAAATTAC 57414365 CAAAATACCC Statistics Matches: 113, Mismatches: 17, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 27 113 1.00 ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41 Consensus pattern (27 bp): TACCCTCGATTTACAAAATTACTGTTT Found at i:57414239 original size:54 final size:54 Alignment explanation
Indices: 57414181--57414294 Score: 129 Period size: 54 Copynumber: 2.1 Consensus size: 54 57414171 ATTACTGAAA * 57414181 TACCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT 1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT * * * **** * * * 57414235 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTATTGTTT 1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT 57414289 TACCCT 1 TACCCT 57414295 TGATTTACAG Statistics Matches: 49, Mismatches: 11, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 54 49 1.00 ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39 Consensus pattern (54 bp): TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAAAATTACTATTT Found at i:57414300 original size:54 final size:54 Alignment explanation
Indices: 57414208--57414365 Score: 199 Period size: 54 Copynumber: 2.9 Consensus size: 54 57414198 ATTACCAAAG * 57414208 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT 1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT * * * * * 57414262 TACCCTCGATTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTT 1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT * * *** * * 57414316 TACCCTCTATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACC 1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACC 57414366 AAAATACCCT Statistics Matches: 86, Mismatches: 18, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 54 86 1.00 ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41 Consensus pattern (54 bp): TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT Found at i:57414369 original size:27 final size:27 Alignment explanation
Indices: 57414330--57414562 Score: 231 Period size: 27 Copynumber: 8.7 Consensus size: 27 57414320 CTCTATTTAC * * ** 57414330 AAAATTACTAAAATACCCTCGGTTTAC 1 AAAATTACCAAAATACCCTCAGTTTGT ** 57414357 AAAATTACCAAAATACCCTC-GATCAGT 1 AAAATTACCAAAATACCCTCAG-TTTGT * 57414384 AAAATTACCAAAATACCCT-AGTCTGT 1 AAAATTACCAAAATACCCTCAGTTTGT * * ** 57414410 AAAATTGCTAAAATACCCTTGGTTTGT 1 AAAATTACCAAAATACCCTCAGTTTGT *** * * 57414437 AAAATTATTGAAATACCCTTAATTTGT 1 AAAATTACCAAAATACCCTCAGTTTGT 57414464 AAAATTACCAAAATACCC-CTAGTTTGT 1 AAAATTACCAAAATACCCTC-AGTTTGT * 57414491 AAAATTACCAAAATACCACT-GGTTTGT 1 AAAATTACCAAAATACC-CTCAGTTTGT * * * 57414518 GAAATTACCGAAATACCCTCAATTTGT 1 AAAATTACCAAAATACCCTCAGTTTGT 57414545 AAAATTACCAAAATACCC 1 AAAATTACCAAAATACCC 57414563 CTGATTTACA Statistics Matches: 172, Mismatches: 27, Indels: 14 0.81 0.13 0.07 Matches are distributed among these distances: 26 24 0.14 27 147 0.85 28 1 0.01 ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30 Consensus pattern (27 bp): AAAATTACCAAAATACCCTCAGTTTGT Found at i:57414401 original size:81 final size:80 Alignment explanation
Indices: 57414316--57414588 Score: 302 Period size: 81 Copynumber: 3.4 Consensus size: 80 57414306 ATTACTGTTT ** * * 57414316 TACCCTCTA-TTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGAT 1 TACCC-CTAGTTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAAT ** 57414380 CAGTAAAATTACCAAAA 64 TTGTAAAATTACCAAAA * ** * ** * 57414397 TA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTATTGAAATACCCTTAATT 1 TACCCCTAGTTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT 57414461 TGTAAAATTACCAAAA 65 TGTAAAATTACCAAAA ** * * 57414477 TACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATT 1 TACCCCTAGTTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATT 57414542 TGTAAAATTACCAAAA 65 TGTAAAATTACCAAAA * 57414558 TACCCCT-GATTTACAAAGTTAC-AGAAATACC 1 TACCCCTAG-TTTACAAAATTACTA-AAATACC 57414589 TTTGACTTTC Statistics Matches: 163, Mismatches: 23, Indels: 12 0.82 0.12 0.06 Matches are distributed among these distances: 79 3 0.02 80 63 0.39 81 96 0.59 82 1 0.01 ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30 Consensus pattern (80 bp): TACCCCTAGTTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT GTAAAATTACCAAAA Found at i:57414579 original size:27 final size:26 Alignment explanation
Indices: 57414330--57414588 Score: 122 Period size: 27 Copynumber: 9.7 Consensus size: 26 57414320 CTCTATTTAC * * * 57414330 AAAATTACTAAAATA-CCCTCGGTTT 1 AAAATTACCAAAATACCCCTAGATTT * * 57414355 ACAAAATTACCAAAATA-CCCTCGATCAGT 1 --AAAATTACCAAAATACCCCTAGAT--TT 57414384 AAAATTACCAAAATA-CCCTAG-TCTGT 1 AAAATTACCAAAATACCCCTAGAT-T-T * * * * * 57414410 AAAATTGCTAAAATACCCTTGGTTTGT 1 AAAATTACCAAAATACCCCTAGATT-T *** * 57414437 AAAATTATTGAAATACCCTTA-ATTTGT 1 AAAATTACCAAAATACCCCTAGA-TT-T * 57414464 AAAATTACCAAAATACCCCTAGTTTGT 1 AAAATTACCAAAATACCCCTAGATT-T * * * 57414491 AAAATTACCAAAATACCACTGGTTTGT 1 AAAATTACCAAAATACCCCTAGATT-T * * 57414518 GAAATTACCGAAATA-CCCTCA-ATTTGT 1 AAAATTACCAAAATACCCCT-AGA-TT-T 57414545 AAAATTACCAAAATACCCCT-GATTT 1 AAAATTACCAAAATACCCCTAGATTT 57414570 ACAAAGTTA-CAGAAATACC 1 A-AAA-TTACCA-AAATACC 57414589 TTTGACTTTC Statistics Matches: 189, Mismatches: 29, Indels: 28 0.77 0.12 0.11 Matches are distributed among these distances: 25 2 0.01 26 25 0.13 27 156 0.83 28 5 0.03 29 1 0.01 ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29 Consensus pattern (26 bp): AAAATTACCAAAATACCCCTAGATTT Found at i:57414631 original size:28 final size:27 Alignment explanation
Indices: 57414601--57414652 Score: 70 Period size: 27 Copynumber: 1.9 Consensus size: 27 57414591 TGACTTTCTA * 57414601 AAAATTA-TGGAACTACCATTGGTTTAC 1 AAAATTACT-GAAATACCATTGGTTTAC * 57414628 AAAATTACTGAAATACCCTTGGTTT 1 AAAATTACTGAAATACCATTGGTTT 57414653 GTAGATTTAC Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 27 21 0.95 28 1 0.05 ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35 Consensus pattern (27 bp): AAAATTACTGAAATACCATTGGTTTAC Found at i:57414797 original size:27 final size:27 Alignment explanation
Indices: 57414706--57414797 Score: 109 Period size: 27 Copynumber: 3.4 Consensus size: 27 57414696 ACCCCTATTA * 57414706 GGTAAAAAGACCGTAAAGCCCCTGTAG 1 GGTAAAATGACCGTAAAGCCCCTGTAG 57414733 GGTAAAGA-GACCGTAAAGCCTCC-GTAG 1 GGTAAA-ATGACCGTAAAGCC-CCTGTAG * * 57414760 GGTAAAGTGACCGTAATA-CCCCTGTAT 1 GGTAAAATGACCGTAA-AGCCCCTGTAG 57414787 GGTAAAATGAC 1 GGTAAAATGAC 57414798 GAATATGCCC Statistics Matches: 57, Mismatches: 3, Indels: 10 0.81 0.04 0.14 Matches are distributed among these distances: 26 2 0.04 27 51 0.89 28 4 0.07 ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18 Consensus pattern (27 bp): GGTAAAATGACCGTAAAGCCCCTGTAG Found at i:57415145 original size:20 final size:22 Alignment explanation
Indices: 57415107--57415148 Score: 70 Period size: 20 Copynumber: 2.0 Consensus size: 22 57415097 TGTGCACGAC 57415107 GAAAGTTGGGCCTCAATGGGCT 1 GAAAGTTGGGCCTCAATGGGCT 57415129 GAAA-TTGGGCC-CAATGGGCT 1 GAAAGTTGGGCCTCAATGGGCT 57415149 TTCGGACCCA Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 20 9 0.45 21 7 0.35 22 4 0.20 ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21 Consensus pattern (22 bp): GAAAGTTGGGCCTCAATGGGCT Done.