Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 176 of 332
Found at i:58058369 original size:20 final size:20
Alignment explanation
Indices: 58058317--58058381 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
58058307 CACTTTGGTT
*
58058317 CCTCTATTTGCACTTCAGTG
1 CCTCTGTTTGCACTTCAGTG
* * *
58058337 CCTTTGATCGCACATTCA-TG
1 CCTCTGTTTGCAC-TTCAGTG
**
58058357 CCTCTGTTTGCACTTTGGTG
1 CCTCTGTTTGCACTTCAGTG
58058377 CCTCT
1 CCTCT
58058382 ATTATGCATC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
19 2 0.06
20 28 0.82
21 4 0.12
ACGTcount: A:0.12, C:0.31, G:0.17, T:0.40
Consensus pattern (20 bp):
CCTCTGTTTGCACTTCAGTG
Found at i:58069825 original size:17 final size:18
Alignment explanation
Indices: 58069786--58069827 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
58069776 CTAACTTTTT
58069786 CAAAATCCTCTAAACTCC
1 CAAAATCCTCTAAACTCC
*
58069804 TAAAATCCT-TAAAAC-CC
1 CAAAATCCTCT-AAACTCC
58069821 CAAAATC
1 CAAAATC
58069828 TGCTTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.21
Consensus pattern (18 bp):
CAAAATCCTCTAAACTCC
Found at i:58073911 original size:47 final size:47
Alignment explanation
Indices: 58073842--58074241 Score: 651
Period size: 47 Copynumber: 8.5 Consensus size: 47
58073832 GTGTGTATAC
*
58073842 GTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
58073889 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
58073936 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
58073985 GTGAAAGTGTATATATGAGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
58074032 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
58074079 GTGAAAGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
58074124 GTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
58074171 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGGTGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
58074218 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
58074242 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
45 45 0.14
47 239 0.72
49 47 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:58074169 original size:139 final size:140
Alignment explanation
Indices: 58073842--58074241 Score: 640
Period size: 139 Copynumber: 2.8 Consensus size: 140
58073832 GTGTGTATAC
*
58073842 GTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
58073907 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA-GTGATAAGGCCTAATGGC
58073972 CGATGTGATGAAT
128 CGATGTGATGAAT
* *
58073985 GTGAAAGTGTATATATGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
58074050 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TGATAAGGCCTAATGGCCGA
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCCTAATGGCCGA
58074114 TGTGATGAAT
131 TGTGATGAAT
*
58074124 GTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
* * * * * * * * *
58074189 GACAGGGCCGAGTGGCCAACGTGGTGGATGTGAAAGTGTATAAATGTGATAAG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAG
58074242 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
139 127 0.53
141 13 0.05
143 100 0.42
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCCTAATGGCCGA
TGTGATGAAT
Found at i:58074416 original size:37 final size:37
Alignment explanation
Indices: 58074360--58074438 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
58074350 CCGAGCTCTA
* * *
58074360 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
58074397 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
58074434 AAGAC
1 AAGAC
58074439 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:58075261 original size:21 final size:21
Alignment explanation
Indices: 58075220--58075262 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
58075210 GAAATTTTTT
*
58075220 TTTTACTTTTTTATGTTTTTG
1 TTTTACTTTTTTATGTATTTG
*
58075241 TTTTATTTTTCTTAT-TATTTG
1 TTTTACTTTT-TTATGTATTTG
58075262 T
1 T
58075263 ATGCTTGAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.77
Consensus pattern (21 bp):
TTTTACTTTTTTATGTATTTG
Found at i:58077784 original size:28 final size:28
Alignment explanation
Indices: 58077753--58077832 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
58077743 GGCTATAAAA
*
58077753 GTGATTGGGCCTAGTGGGCTATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
58077781 GTGATTTGGGTCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
58077810 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
58077833 AACATGTATG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 21 0.48
29 22 0.50
30 1 0.02
ACGTcount: A:0.23, C:0.12, G:0.35, T:0.30
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:58081669 original size:28 final size:28
Alignment explanation
Indices: 58081594--58081671 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
58081584 CTATAAAAGT
* * *
58081594 GATTGGGCCTAGTGGGCCACATAGATGT
1 GATTGGGCCTAGTGAGCCATATAGATGA
* *
58081622 GATTTGGGCCTAATGTGCCATAT-GAATGA
1 GA-TTGGGCCTAGTGAGCCATATAG-ATGA
58081651 GATTGGGCCTAGTGAGCCATA
1 GATTGGGCCTAGTGAGCCATA
58081672 AACATGTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 20 0.48
29 22 0.52
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (28 bp):
GATTGGGCCTAGTGAGCCATATAGATGA
Found at i:58084513 original size:27 final size:27
Alignment explanation
Indices: 58084483--58084573 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
58084473 CCCCTAATAA
* *
58084483 GTAAAAAGTCCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
58084510 GTAAAATGACTGTAA-AGCCCATGTCGG
1 GTAAAATGACCGTAATA-CCCCTGTAGG
* *
58084537 GTAAAGTGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
58084564 GTAAAATGAC
1 GTAAAATGAC
58084574 GATTATGCCC
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:58084754 original size:27 final size:27
Alignment explanation
Indices: 58084714--58084778 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
58084704 GGAACTTCTG
* * * *
58084714 TACTGGTGACTATGTCAC-ATTCGCTGT
1 TACTGGTGGCTATGCCACAATT-ACTGA
*
58084741 TACTGGTGGTTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGA
58084768 TACTGGTGGCT
1 TACTGGTGGCT
58084779 TTACCACATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGA
Found at i:58086156 original size:27 final size:27
Alignment explanation
Indices: 58086089--58086159 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
58086079 TACCCTTAAT
* *
58086089 AGGTAAAA-AGACCCTAATGCCCCTGTA
1 AGGTAAAATA-ACCGTAAAGCCCCTGTA
*
58086116 GGGTAAAATAACCGTAAAGCCCCTGTA
1 AGGTAAAATAACCGTAAAGCCCCTGTA
* *
58086143 AGGTAAAGTTACCGTAA
1 AGGTAAAATAACCGTAA
58086160 TACCTCTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (27 bp):
AGGTAAAATAACCGTAAAGCCCCTGTA
Found at i:58086606 original size:33 final size:33
Alignment explanation
Indices: 58086559--58086639 Score: 117
Period size: 33 Copynumber: 2.5 Consensus size: 33
58086549 ATTACATCGT
* * * *
58086559 ACTGTATTGTTACTGAATAGGGCTTTGGCCCAG
1 ACTGTACTGATACTGAATAGGACTTTGGCCCAA
*
58086592 ACTGTACTGATACTGAATAGTACTTTGGCCCAA
1 ACTGTACTGATACTGAATAGGACTTTGGCCCAA
58086625 ACTGTACTGATACTG
1 ACTGTACTGATACTG
58086640 TGTTATTCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAGGACTTTGGCCCAA
Found at i:58096915 original size:47 final size:45
Alignment explanation
Indices: 58096784--58096932 Score: 142
Period size: 46 Copynumber: 3.2 Consensus size: 45
58096774 GACGAGTCCT
* * ** *
58096784 AGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGGCG-TAAGCC
1 AGTGTAAGACATGTCTAGGACATGCTTCGA-CTTGAGATGAT-AGTC
* * *
58096830 AGTGTAAGACATGTCTAGGACATGCGTCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTAGGACATGCTTCGACT-TGAGATGATAGTC
58096876 AGTGTAAGAACATGTCTAGGACATGGCTTCGACTTGAGAT-AT-GTGCC
1 AGTGTAAG-ACATGTCTAGGACAT-GCTTCGACTTGAGATGATAGT--C
58096923 AGTGTAAGAC
1 AGTGTAAGAC
58096933 CGTGTCTGGG
Statistics
Matches: 87, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
45 4 0.05
46 46 0.53
47 30 0.34
48 7 0.08
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGCTTCGACTTGAGATGATAGTC
Found at i:58096939 original size:47 final size:49
Alignment explanation
Indices: 58096827--58096932 Score: 134
Period size: 47 Copynumber: 2.3 Consensus size: 49
58096817 TGAGGCGTAA
* *
58096827 GCCAGTGTAAGACATGTCTAGGACAT-GCGTCGGCTACGAGATGATAGT
1 GCCAGTGTAAGACATGTCTAGGACATGGCTTCGACTACGAGATGATAGT
*
58096875 --CAGTGTAAGAACATGTCTAGGACATGGCTTCGACT-TGAGAT-AT-GT
1 GCCAGTGTAAG-ACATGTCTAGGACATGGCTTCGACTACGAGATGATAGT
58096920 GCCAGTGTAAGAC
1 GCCAGTGTAAGAC
58096933 CGTGTCTGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
45 2 0.04
46 13 0.25
47 29 0.57
48 7 0.14
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GCCAGTGTAAGACATGTCTAGGACATGGCTTCGACTACGAGATGATAGT
Found at i:58101244 original size:40 final size:40
Alignment explanation
Indices: 58100962--58101230 Score: 502
Period size: 40 Copynumber: 6.7 Consensus size: 40
58100952 TATTCGGATG
*
58100962 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58101002 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
58101042 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58101082 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58101122 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58101162 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58101202 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
58101231 AGCAAGTAGC
Statistics
Matches: 222, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:58109128 original size:40 final size:40
Alignment explanation
Indices: 58109060--58109208 Score: 262
Period size: 40 Copynumber: 3.7 Consensus size: 40
58109050 TATTCGGATG
* * *
58109060 ATAACCGGGCTAAGTTCCAAAGGAATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58109100 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58109140 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58109180 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
58109209 AGCAAGTAGC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:58109222 original size:40 final size:40
Alignment explanation
Indices: 58109060--58109231 Score: 258
Period size: 40 Copynumber: 4.3 Consensus size: 40
58109050 TATTCGGATG
* * * *
58109060 ATAACCGGGCTAAGTTCCAAAGGAATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
58109100 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
58109140 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
58109180 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
*
58109220 ATATCC-GGCTAA
1 ATAACCGGGCTAA
58109232 ATTTTGAAGG
Statistics
Matches: 123, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 8 0.07
40 115 0.93
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:58120514 original size:46 final size:45
Alignment explanation
Indices: 58120461--58120671 Score: 135
Period size: 46 Copynumber: 4.5 Consensus size: 45
58120451 ACTGTAAGCT
58120461 AGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACATTATGAGAGCC
** *
58120507 AGTGTAAGACCATGTCTCAGACATGGCATCGG--CATTGA-GACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACATT-ATGA-GA--GCC
* * * * *
58120555 AGTGTAAGACATGTCTGGAACATGCATTGGC-C-TCGAGGCATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACAT-TATG-A-GAGCC
* * ** * *
58120601 AATGTAAGACATGTCTGGGACATGCGTCGGCTACAAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACATTATGAGAGCC
**
58120647 AGTGTAAGACCATAACTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
58120672 GTTTTGACTT
Statistics
Matches: 129, Mismatches: 22, Indels: 27
0.72 0.12 0.15
Matches are distributed among these distances:
45 6 0.05
46 60 0.47
47 39 0.30
48 24 0.19
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGAGAGCC
Found at i:58120568 original size:47 final size:44
Alignment explanation
Indices: 58120457--58120570 Score: 115
Period size: 47 Copynumber: 2.5 Consensus size: 44
58120447 GGTTACTGTA
**
58120457 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGAG
1 AGCTAGTGTAAGACATGTCTCAGACATGCATCGG--ACATTATGAG
*
58120503 AGCCAGTGTAAGACCATGTCTCAGACATGGCATCGG-CATTGA-GACG
1 AGCTAGTGTAAGA-CATGTCTCAGACAT-GCATCGGACATT-ATGA-G
58120549 AGTGCTAGTGTAAGACATGTCT
1 A--GCTAGTGTAAGACATGTCT
58120571 GGAACATGCA
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
45 6 0.10
46 15 0.26
47 19 0.33
48 18 0.31
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCTCAGACATGCATCGGACATTATGAG
Found at i:58123089 original size:39 final size:40
Alignment explanation
Indices: 58123044--58123267 Score: 231
Period size: 40 Copynumber: 5.7 Consensus size: 40
58123034 GCTCCTCGTT
* * * *
58123044 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
58123084 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
58123123 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
58123163 CAAAGGCCTTCGGGGCTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
58123202 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
58123243 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
58123268 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 2 0.01
39 63 0.41
40 79 0.51
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:58123133 original size:79 final size:77
Alignment explanation
Indices: 58123044--58123267 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 77
58123034 GCTCCTCGTT
* * *
58123044 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
58123109 TT-TAATGACTCGCA
66 TTGT-AT--CTCGCA
* * * * *
58123123 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
58123188 AATTGTATCTCGCA
65 -ATTGTATCTCGCA
* * * * * *
58123202 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
58123266 GA
64 GA
58123268 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 4 0.03
79 86 0.71
80 25 0.21
81 5 0.04
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
TTGTATCTCGCA
Found at i:58123276 original size:41 final size:41
Alignment explanation
Indices: 58123199--58123276 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
58123189 ATTGTATCTC
* * *
58123199 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
58123240 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
58123277 ATTAATCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:58131056 original size:40 final size:38
Alignment explanation
Indices: 58130935--58131191 Score: 191
Period size: 40 Copynumber: 6.5 Consensus size: 38
58130925 AAATCACATA
* * *
58130935 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
58130974 CCTTC-GGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
58131012 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
58131052 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
* *
58131092 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
58131132 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
58131172 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
58131192 CAGCATTCAA
Statistics
Matches: 178, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.01
38 15 0.08
39 44 0.25
40 105 0.59
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:58131200 original size:41 final size:41
Alignment explanation
Indices: 58131123--58131200 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
58131113 CTTGTATCTC
* * *
58131123 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
58131164 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
58131201 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:58140359 original size:29 final size:29
Alignment explanation
Indices: 58140313--58140431 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
58140303 GTGAGCATGA
*
58140313 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * * *
58140341 ATATGAATGTGAAATGGGCCTAGTGGACC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
58140370 ATAAGAATATGAATTGGGCC-AGATAGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
58140399 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
58140427 ATATG
1 ATATG
58140432 CATGTATGTA
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
28 22 0.31
29 49 0.69
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:58140380 original size:58 final size:57
Alignment explanation
Indices: 58140317--58140429 Score: 138
Period size: 58 Copynumber: 2.0 Consensus size: 57
58140307 GCATGAATAT
* * **
58140317 AATATGATTTGGGCCTA-ATGGGCCATATGAATGTGAAATGGGCCTAGTGGACCATAAG
1 AATATGAATTGGGCC-AGATAGGCCATATGAATAAG-AATGGGCCTAGTGGACCATAAG
* * *
58140375 AATATGAATTGGGCCAGATAGGCCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGGCCAGATAGGCCATATGAATAAGAATGGGCCTAGTGGACCATA
58140430 TGCATGTATG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (57 bp):
AATATGAATTGGGCCAGATAGGCCATATGAATAAGAATGGGCCTAGTGGACCATAAG
Found at i:58144367 original size:93 final size:93
Alignment explanation
Indices: 58144235--58144406 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
58144225 GCCCATAAGT
* * *
58144235 GAACTTGGACTCAACTCAACGAGCTTGGGCGTTCACATCCAGAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCACATCCAGAAGTGAACTCAGACTCAACTCAA
58144300 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
58144328 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCACATCCAGAAGTGAACTCAGACTCAACTCA
* *
58144392 ACGAGTTTGGATGCC
65 ACGAGCTCGGATGCC
58144407 CAAACATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCACATCCAGAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:58144394 original size:46 final size:44
Alignment explanation
Indices: 58144227--58144398 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 44
58144217 TGTAACCCGC
* * *
58144227 CCATAAGTGAACTTGGACTCAACTCAACGAGCTTGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGCATTC-CAT
* * * *
58144273 CCAGAAGTGAACTCAGACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCC-A--T
* ***
58144319 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTC-CAT
58144366 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
58144399 TGGATGCCCA
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 57 0.57
47 31 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCCAT
Found at i:58144421 original size:46 final size:46
Alignment explanation
Indices: 58144278--58144421 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
58144268 CACATCCAGA
* * *
58144278 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
58144327 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
* *
58144371 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
58144417 AGTGA
1 AGTGA
58144422 CATGTCACTT
Statistics
Matches: 74, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.43
47 30 0.41
49 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:58147511 original size:29 final size:29
Alignment explanation
Indices: 58147478--58147578 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 29
58147468 ATATGATTTT
* *
58147478 GGCCTAATAGGCCATATGAATGTGAATAG
1 GGCCTAATGGGCCATATGAATATGAATAG
* * *
58147507 GGCCTAGTGGGCCATAAGAATATGAATTG
1 GGCCTAATGGGCCATATGAATATGAATAG
* * *
58147536 GGCC-AGATGGGCCATTTGAATAAGATTA-
1 GGCCTA-ATGGGCCATATGAATATGAATAG
*
58147564 GGCCTAGTGGGCCAT
1 GGCCTAATGGGCCAT
58147579 GTGCATGTAT
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
28 13 0.22
29 45 0.78
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATATGAATAG
Found at i:58150010 original size:40 final size:40
Alignment explanation
Indices: 58149928--58150107 Score: 158
Period size: 40 Copynumber: 4.5 Consensus size: 40
58149918 TATTCGAATG
** * *
58149928 ATATCCGGGCTAAG-TCTCGAAGGTTTTTATGCTAG-TGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCGAGTTG-CT
* *
58149968 ATATCCGGACTAAGATCCGATGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCT
* * *
58150008 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACC
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
* * *
58150048 ATATCCGGGCTAAGA-CTCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCGAGTTGCT
58150087 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
58150108 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 11 0.09
39 18 0.15
40 83 0.71
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCT
Found at i:58150061 original size:80 final size:79
Alignment explanation
Indices: 58149928--58150107 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 79
58149918 TATTCGAATG
* * ** * *
58149928 ATATCCGGGCTAAGTCTCGAAGGTTTTTATGCTAGTGACTATATCCGGACTAAGA-TCCGATGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACT-CGAAGGC
* *
58149992 ATTTGTGCGAGTTGCT
65 -CTTGTGCGAGTGGCT
* *
58150008 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACCATATCCGGGCTAAGACTCGAAGGCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACTCGAAGGCC
*
58150073 TTGTGCGAGTGGTT
66 TTGTGCGAGTGGCT
58150087 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
58150108 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
77 1 0.01
78 13 0.15
79 18 0.21
80 54 0.62
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACTCGAAGGCC
TTGTGCGAGTGGCT
Found at i:58155067 original size:29 final size:29
Alignment explanation
Indices: 58155009--58155165 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
58154999 ATAGTAAGTC
*
58155009 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
58155037 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
58155066 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
58155095 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
58155123 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
58155152 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58155166 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:58155116 original size:57 final size:58
Alignment explanation
Indices: 58155009--58155165 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
58154999 ATAGTAAGTC
*
58155009 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
58155066 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
58155123 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
58155166 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:58161365 original size:40 final size:40
Alignment explanation
Indices: 58161305--58161488 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
58161295 TATTCGAATG
*
58161305 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
58161345 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
58161385 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
58161425 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACCT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGA-CT
* *
58161466 -CATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
58161489 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.01
40 117 0.95
41 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:58161438 original size:80 final size:80
Alignment explanation
Indices: 58161305--58161488 Score: 239
Period size: 80 Copynumber: 2.3 Consensus size: 80
58161295 TATTCGAATG
* * *
58161305 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
*
58161369 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACT
* * *
58161385 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
58161450 TTTATGCTAGTGACCT
66 TTTATGCGAGTGA-CT
*
58161466 -CATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58161489 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 3 0.03
80 86 0.95
81 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACT
Found at i:58164524 original size:20 final size:20
Alignment explanation
Indices: 58164499--58164560 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
58164489 GCAGTATAAA
58164499 GTACATTATAAATGTAGAAC
1 GTACATTATAAATGTAGAAC
* * * *
58164519 GTACA-TGT-GATGTATAAG
1 GTACATTATAAATGTAGAAC
*
58164537 GTACATTATAAATGAAGAAC
1 GTACATTATAAATGTAGAAC
58164557 GTAC
1 GTAC
58164561 CTGTGATAAC
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
18 12 0.39
19 4 0.13
20 15 0.48
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (20 bp):
GTACATTATAAATGTAGAAC
Found at i:58164543 original size:38 final size:38
Alignment explanation
Indices: 58164492--58164567 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
58164482 TATCAGTGCA
*
58164492 GTATAAAGTACATTATAAATGTAGAACGTACATGTGAT
1 GTATAAAGTACATTATAAATGAAGAACGTACATGTGAT
* *
58164530 GTATAAGGTACATTATAAATGAAGAACGTACCTGTGAT
1 GTATAAAGTACATTATAAATGAAGAACGTACATGTGAT
58164568 AACATCTGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (38 bp):
GTATAAAGTACATTATAAATGAAGAACGTACATGTGAT
Found at i:58168146 original size:46 final size:46
Alignment explanation
Indices: 58168096--58168271 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
58168086 TGGTTGAGCA
58168096 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58168142 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
58168187 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58168235 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58168272 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58168252 original size:93 final size:93
Alignment explanation
Indices: 58168093--58168264 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
58168083 GGATGGTTGA
* *
58168093 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58168158 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
58168186 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58168251 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
58168265 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58175680 original size:46 final size:46
Alignment explanation
Indices: 58175630--58175805 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
58175620 TGGTTGAGCA
58175630 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58175676 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
58175721 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58175769 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58175806 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58175786 original size:93 final size:93
Alignment explanation
Indices: 58175627--58175798 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
58175617 GGATGGTTGA
* *
58175627 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58175692 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
58175720 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58175785 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
58175799 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58185667 original size:41 final size:41
Alignment explanation
Indices: 58185622--58185802 Score: 156
Period size: 41 Copynumber: 4.4 Consensus size: 41
58185612 GCACAAACAT
* *
58185622 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
58185663 CCTTC-GAGACCAAGCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * *
58185704 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
58185744 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
58185785 CCTTC-GAGACTAAGCCCG
1 CCTTCGGA-ACTAAGCCCG
58185803 GATTTAGACC
Statistics
Matches: 113, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
40 43 0.38
41 63 0.56
42 7 0.06
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:58185745 original size:81 final size:80
Alignment explanation
Indices: 58185648--58185803 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 80
58185638 CGATTCTTAG
* * *
58185648 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG-ATTAGACCACTGGCTCGAAGGCCCTTCG-G
1 CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGTATTAG--CACTGGCTCAAAAGCCCTTCGAG
*
58185711 AACTAAGTCCGGTTATGA
64 -ACTAAGCCCGGTTATGA
* * *
58185729 CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTCGAGA
1 CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG-TATTAGCACTGGCTCAAAAGCCCTTCGAGA
58185794 CTAAGCCCGG
65 CTAAGCCCGG
58185804 ATTTAGACCC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
81 59 0.91
82 1 0.02
83 5 0.08
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.21
Consensus pattern (80 bp):
CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGTATTAGCACTGGCTCAAAAGCCCTTCGAGAC
TAAGCCCGGTTATGA
Found at i:58185746 original size:40 final size:41
Alignment explanation
Indices: 58185648--58185803 Score: 176
Period size: 41 Copynumber: 3.8 Consensus size: 41
58185638 CGATTCTTAG
*
58185648 CACTGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAGACTAAGTC-CGG-TTATGAC
* *
58185689 CACTGGCTCGAAGGCCCTTCG-GAACTAAGTCCGGTTATGA-
1 CACTGGCTCAAAAGCCCTTCGAG-ACTAAGTCCGGTTATGAC
* * * * *
58185729 CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAGACTAAGTCCGGTTATGAC
*
58185770 CACTGGCTCAAAAGCCCTTCGAGACTAAGCCCGG
1 CACTGGCTCAAAAGCCCTTCGAGACTAAGTCCGG
58185804 ATTTAGACCC
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
40 38 0.39
41 59 0.60
42 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.21
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAGACTAAGTCCGGTTATGAC
Found at i:58186796 original size:38 final size:38
Alignment explanation
Indices: 58186754--58186831 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
58186744 ATTTTAAAAA
58186754 AATAATCTCTAATCTTTCATACTTTCATAGCCAATATC
1 AATAATCTCTAATCTTTCATACTTTCATAGCCAATATC
58186792 AATAATCTCTAATCTTTCATACTTTCATAGCCAATATC
1 AATAATCTCTAATCTTTCATACTTTCATAGCCAATATC
58186830 AA
1 AA
58186832 CTATTATTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (38 bp):
AATAATCTCTAATCTTTCATACTTTCATAGCCAATATC
Found at i:58194670 original size:39 final size:40
Alignment explanation
Indices: 58194530--58194753 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
58194520 TATTCGAATG
* * *
58194530 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * *
58194571 ATAACCGGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-CGACT
*
58194611 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
58194651 ATAT-CGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
58194690 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
58194730 ACATCCGGGCTAAGACCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58194754 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 89 0.57
41 29 0.19
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:58194747 original size:119 final size:119
Alignment explanation
Indices: 58194530--58194789 Score: 296
Period size: 119 Copynumber: 2.2 Consensus size: 119
58194520 TATTCGAATG
* * *
58194530 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATAT-CGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
58194595 ATTCGTGTGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
65 ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
58194651 ATATCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGC
* * *
58194714 ATTTATGCT-AG-TGACCACATCCGGGCTAAGACCCGTAGGCCTTGTGCAAGTAGTT
65 ATTCATG-TGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
*
58194769 ATATCCGGCTAAATCCCGAAG
1 ATATCGGGCTAAATCCCGAAG
58194790 ATTTCTTGAG
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
117 1 0.01
118 32 0.27
119 55 0.46
120 27 0.23
121 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (119 bp):
ATATCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCA
TTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:58194759 original size:79 final size:80
Alignment explanation
Indices: 58194530--58194789 Score: 280
Period size: 79 Copynumber: 3.3 Consensus size: 80
58194520 TATTCGAATG
* * * *
58194530 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
58194595 ATTCGTG-TGAGTTGCT
65 ATT-GTGCTGAGTCGCT
* * * *
58194611 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATAT-CGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
58194675 TTTGTGCT-AG-CGACT
66 -TTGTGCTGAGTCG-CT
* * * * *
58194690 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGTAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
58194755 TTGTGC-AAGTAGTT
66 TTGTGCTGAGTCGCT
*
58194769 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
58194790 ATTTCTTGAG
Statistics
Matches: 152, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
78 15 0.10
79 77 0.51
80 28 0.18
81 32 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTGTGCTGAGTCGCT
Found at i:58202711 original size:40 final size:40
Alignment explanation
Indices: 58202656--58202872 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
58202646 CGGATGATAA
*
58202656 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
58202696 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
58202736 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
58202776 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
58202816 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
58202855 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
58202873 TACTTGGCTT
Statistics
Matches: 165, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 135 0.82
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:58206773 original size:47 final size:47
Alignment explanation
Indices: 58206623--58206765 Score: 198
Period size: 48 Copynumber: 3.0 Consensus size: 47
58206613 CACATGGTAG
* * * * *
58206623 GATGCCAATGCCATATCCCGAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCAG-ACATGGTCTTACATGGGATCATAGATC
58206671 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC-TAGATC
1 GATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATCATAGATC
* *
58206718 GATGCCAATGCCATGTCCAGACATGATCTTACATAGGATCATAGATC
1 GATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCATAGATC
58206765 G
1 G
58206766 TTTCCAATAG
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
46 20 0.23
47 29 0.34
48 36 0.42
49 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCATAGATC
Found at i:58209590 original size:26 final size:26
Alignment explanation
Indices: 58209561--58209613 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
58209551 CATCATCTAA
58209561 TAAGGCCAACTGAGTGTTCATAGCCC
1 TAAGGCCAACTGAGTGTTCATAGCCC
58209587 TAAGGCCAACTGAGTGTTCATAGCCC
1 TAAGGCCAACTGAGTGTTCATAGCCC
58209613 T
1 T
58209614 CAAAGTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
TAAGGCCAACTGAGTGTTCATAGCCC
Found at i:58211993 original size:39 final size:39
Alignment explanation
Indices: 58211950--58212168 Score: 230
Period size: 39 Copynumber: 5.6 Consensus size: 39
58211940 TCCTCGTTCA
* * * *
58211950 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
58211989 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
58212028 GAATGCCTTCGGGACTTAACCCGGATTTA-T-ACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
58212066 AAAGCCTTCGGGACTTAACCCGGAATTT-GTATCTCGCAC
1 AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
* ** * * * *
58212105 AAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
58212145 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
58212169 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
37 22 0.14
38 19 0.12
39 61 0.39
40 52 0.33
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:58212128 original size:116 final size:117
Alignment explanation
Indices: 58211948--58212168 Score: 261
Period size: 116 Copynumber: 1.9 Consensus size: 117
58211938 GCTCCTCGTT
* * *
58211948 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
* * *
58212013 TTTAATAAC-TCGCACGAATGCCTTCGGGACTTAACCCGGATTTATACTCGCA
66 TATAATAACTTAGCAC-AAAGCCTTCGGGACTTAACCCGGATTTATACTCGCA
* * * **
58212065 CAAA-GCCTTCGGGACTTAACCCGGAATTT-GTATCTCGCACAAAGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCACACAAAGCCTTCGGGA-CTTAACCCG
* * *
58212127 GATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GATATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
58212169 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
115 3 0.03
116 72 0.83
117 12 0.14
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (117 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
TATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTATACTCGCA
Found at i:58224335 original size:40 final size:40
Alignment explanation
Indices: 58224241--58224464 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
58224231 TATTCGAATG
*
58224241 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
58224282 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
58224322 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
58224362 ATATCCGGGCTAA-AACCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
58224401 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
58224441 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
58224465 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
39 38 0.24
40 89 0.57
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:58224420 original size:79 final size:80
Alignment explanation
Indices: 58224241--58224500 Score: 303
Period size: 79 Copynumber: 3.3 Consensus size: 80
58224231 TATTCGAATG
* * * *
58224241 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGAACCGAAGGC
*
58224306 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
58224322 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-AACCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACCGAAGGCA
* *
58224386 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
58224401 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACCGAAGGCA
* * *
58224466 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
58224480 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
58224501 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
78 15 0.10
79 80 0.52
80 27 0.18
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:58224454 original size:119 final size:121
Alignment explanation
Indices: 58224241--58224464 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 121
58224231 TATTCGAATG
** * *
58224241 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGAACCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
58224306 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
58224362 ATATCCGGGCTAA-AACCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGAACCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
58224424 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
58224465 CTTGTGCAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 57 0.63
120 17 0.19
121 13 0.14
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAGAACCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:58227278 original size:41 final size:41
Alignment explanation
Indices: 58227229--58227395 Score: 118
Period size: 40 Copynumber: 4.1 Consensus size: 41
58227219 AGCCCGATTC
*
58227229 TTAG-CACTGGCTCAAAAGCCCTTCGAGATC-AAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGAACTAAGCTCGGA
** * *
58227268 TTAGACCACTGGCTGGAAGGCCCGTCG-GAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAGAACTAAGCT-CGGA
* * * * *
58227308 TTATGATACTGGCTCTAAAGCACTTCGA-AACTAAGTTTGGTTA
1 TTA-GACACTGGCTCAAAAGCCCTTCGAGAACTAAGCTCGG--A
*
58227351 TTAG-CACTGGCTCAAAA-CCCTTCGAG-ACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGAACTAAGCTCGGA
58227389 TTTAGAC
1 -TTAGAC
58227396 CCCGATTAGC
Statistics
Matches: 97, Mismatches: 18, Indels: 25
0.69 0.13 0.18
Matches are distributed among these distances:
38 1 0.01
39 8 0.08
40 47 0.48
41 37 0.38
42 1 0.01
43 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGAACTAAGCTCGGA
Found at i:58233755 original size:27 final size:27
Alignment explanation
Indices: 58233698--58233757 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
58233688 AAACATCTCA
*
58233698 TAGGGGCATATCAATCATTTTACCATG
1 TAGGGGCATATCAATCATTTTACAATG
*
58233725 TAGGGGCATTTCAATCATTTTATCAAT-
1 TAGGGGCATATCAATCATTTTA-CAATG
58233752 TAGGGG
1 TAGGGG
58233758 GTTTAGGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (27 bp):
TAGGGGCATATCAATCATTTTACAATG
Found at i:58236444 original size:26 final size:26
Alignment explanation
Indices: 58236407--58236460 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
58236397 GTTAATTAGA
58236407 GAAAAGTCTCAATCATTCAATCTAGG
1 GAAAAGTCTCAATCATTCAATCTAGG
*
58236433 GAAAAGTTTCAATCATTCAATCTAGG
1 GAAAAGTCTCAATCATTCAATCTAGG
58236459 GA
1 GA
58236461 TTAGACGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (26 bp):
GAAAAGTCTCAATCATTCAATCTAGG
Found at i:58246897 original size:29 final size:29
Alignment explanation
Indices: 58246804--58246899 Score: 104
Period size: 29 Copynumber: 3.3 Consensus size: 29
58246794 GAGAGCATGT
*
58246804 ATATGAATGTGATTTGGGCCTAATGGGT-T
1 ATATGAATGTGATTTGGGCCTAAT-GGTCC
* ** *
58246833 GTATGAATGCAATTTGGGGCCTAATGGGCC
1 ATATGAATGTGATTT-GGGCCTAATGGTCC
* *
58246863 ACATGAATATGATTTGGGCCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGTCC
58246892 ATATGAAT
1 ATATGAAT
58246900 TAGATTGGGC
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
29 34 0.64
30 19 0.36
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGTCC
Found at i:58246905 original size:29 final size:30
Alignment explanation
Indices: 58246804--58246910 Score: 100
Period size: 29 Copynumber: 3.7 Consensus size: 30
58246794 GAGAGCATGT
*
58246804 ATATGAATGT-GATTTGGGCCTAATGGGT-T
1 ATATGAATGTAGATTTGGGCCTAAT-GGTCC
* * *
58246833 GTATGAATGCA-ATTTGGGGCCTAATGGGCC
1 ATATGAATGTAGATTT-GGGCCTAATGGTCC
* *
58246863 ACATGAATAT-GATTTGGGCCTAATGGTCC
1 ATATGAATGTAGATTTGGGCCTAATGGTCC
58246892 ATATGAAT-TAGA-TTGGGCC
1 ATATGAATGTAGATTTGGGCC
58246911 CAGTAGGCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
28 8 0.13
29 36 0.57
30 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (30 bp):
ATATGAATGTAGATTTGGGCCTAATGGTCC
Found at i:58251342 original size:29 final size:29
Alignment explanation
Indices: 58251308--58251426 Score: 159
Period size: 29 Copynumber: 4.1 Consensus size: 29
58251298 GAGAGCATGT
58251308 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
58251337 GTATGAATGTGATTTGGGCCTAATCGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
58251366 ACATGAATATGATTTGGGCCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
58251395 ATATGAATGAGA-TTGGGCCTAGTGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
58251423 ATAT
1 ATAT
58251427 ACATGTATGT
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 17 0.22
29 60 0.78
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:58255622 original size:11 final size:11
Alignment explanation
Indices: 58255606--58255631 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
58255596 GTGTGTTAAT
58255606 ACACTGCACAC
1 ACACTGCACAC
58255617 ACACTGCACAC
1 ACACTGCACAC
58255628 ACAC
1 ACAC
58255632 AATAGATCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.46, G:0.08, T:0.08
Consensus pattern (11 bp):
ACACTGCACAC
Found at i:58255803 original size:18 final size:17
Alignment explanation
Indices: 58255780--58255813 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
58255770 ATCGGGCCAG
58255780 GATGGGCTAATTGGGCCC
1 GATGGG-TAATTGGGCCC
*
58255798 GATGGGTTATTGGGCC
1 GATGGGTAATTGGGCC
58255814 ATAGTAGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.18, G:0.41, T:0.26
Consensus pattern (17 bp):
GATGGGTAATTGGGCCC
Found at i:58255905 original size:29 final size:29
Alignment explanation
Indices: 58255871--58255966 Score: 124
Period size: 29 Copynumber: 3.3 Consensus size: 29
58255861 GAGAGCATGT
58255871 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* **
58255900 GTATGAATGTGATTTGGGCCTAATGTTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
58255929 ATATGAAT-TAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGT-GATTTGGGCCTAATGGGCC
*
58255957 ATATGCATGT
1 ATATGAATGT
58255967 ATGTAGACTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:58262452 original size:18 final size:18
Alignment explanation
Indices: 58262431--58262631 Score: 168
Period size: 18 Copynumber: 11.2 Consensus size: 18
58262421 TTAAGACACA
* *
58262431 CATAATAACATATGTTCA
1 CATAATAACATAGGTTCG
* *
58262449 CATAAAAACATAGGTTTG
1 CATAATAACATAGGTTCG
* * * *
58262467 TATGATAACATATGTTCA
1 CATAATAACATAGGTTCG
* * * *
58262485 TATAACAACATAGCTTCT
1 CATAATAACATAGGTTCG
* *
58262503 CATAATAACATAAGTTTG
1 CATAATAACATAGGTTCG
* * * *
58262521 CATGATAACATAAGCTCA
1 CATAATAACATAGGTTCG
* *
58262539 CATGATAACATAGGTTTG
1 CATAATAACATAGGTTCG
*
58262557 CATAACAACATAGGTTCG
1 CATAATAACATAGGTTCG
*
58262575 CATAATATCATAGGTTCG
1 CATAATAACATAGGTTCG
* * *
58262593 TATAATAGCATAAGTTCG
1 CATAATAACATAGGTTCG
*
58262611 CATAACAACATAGGTTCG
1 CATAATAACATAGGTTCG
58262629 CAT
1 CAT
58262632 GAAATATGGG
Statistics
Matches: 142, Mismatches: 41, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 142 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (18 bp):
CATAATAACATAGGTTCG
Found at i:58262514 original size:54 final size:53
Alignment explanation
Indices: 58262432--58262633 Score: 190
Period size: 54 Copynumber: 3.7 Consensus size: 53
58262422 TAAGACACAC
* * * *
58262432 ATAATAACATATGTTCACATAAAAACATAGGTTTGTATGATAACATATGTTCAT
1 ATAATAACATA-GTTCTCATAACAACATAGGTTTGCATGATAACATAAGTTCAT
* * * * *
58262486 ATAACAACATAGCTTCTCATAATAACATAAGTTTGCATGATAACATAAGCTCAC
1 ATAATAACATAG-TTCTCATAACAACATAGGTTTGCATGATAACATAAGTTCAT
* * * * * *
58262540 ATGATAACATAGGTT-TGCATAACAACATAGGTTCGCATAATATCATAGGTTCGT
1 ATAATAACATA-GTTCT-CATAACAACATAGGTTTGCATGATAACATAAGTTCAT
* * *
58262594 ATAATAGCATAAGTTCGCATAACAACATAGGTTCGCATGA
1 ATAATAACAT-AGTTCTCATAACAACATAGGTTTGCATGA
58262634 AATATGGGAT
Statistics
Matches: 120, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
53 2 0.02
54 116 0.97
55 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (53 bp):
ATAATAACATAGTTCTCATAACAACATAGGTTTGCATGATAACATAAGTTCAT
Found at i:58264002 original size:26 final size:25
Alignment explanation
Indices: 58263972--58264062 Score: 82
Period size: 24 Copynumber: 3.7 Consensus size: 25
58263962 GGACTCATCA
58263972 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACCGAT-TAT
* * *
58263998 CAGCTCGTAAGAGCTT-GCTATTAT
1 CAGCTCGTATGAGCTTACCGATTAT
* *
58264022 CAGCTCAT-TGGAGCTTACTG-TT-T
1 CAGCTCGTAT-GAGCTTACCGATTAT
*
58264045 TAGCTCGTATGAGCTTAC
1 CAGCTCGTATGAGCTTAC
58264063 TGTTCAGCTC
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
23 15 0.29
24 19 0.37
25 3 0.06
26 15 0.29
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATTAT
Found at i:58264058 original size:23 final size:25
Alignment explanation
Indices: 58263972--58264135 Score: 114
Period size: 23 Copynumber: 6.8 Consensus size: 25
58263962 GGACTCATCA
*
58263972 CAGCTCGTAT-GAGCTTACCGATATAT
1 CAGCTCGTATAGAGCTTACTG-T-TAT
* *
58263998 CAGCTCGTA-AGAGCTTGCTATTAT
1 CAGCTCGTATAGAGCTTACTGTTAT
* *
58264022 CAGCTCAT-TGGAGCTTACTGTT-T
1 CAGCTCGTATAGAGCTTACTGTTAT
*
58264045 TAGCTCGTAT-GAGCTTACTG-T-T
1 CAGCTCGTATAGAGCTTACTGTTAT
*
58264067 CAGCTCG-ATAGAACTTACTGTT-T
1 CAGCTCGTATAGAGCTTACTGTTAT
* *
58264090 CAGCTC-AATAGAGCTTATTGTTCAT
1 CAGCTCGTATAGAGCTTACTGTT-AT
* ** *
58264115 TAGCTCGGGTGGAGCTTACTG
1 CAGCTCGTATAGAGCTTACTG
58264136 ATCATAGCTT
Statistics
Matches: 111, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.02
22 17 0.15
23 38 0.34
24 21 0.19
25 7 0.06
26 26 0.23
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (25 bp):
CAGCTCGTATAGAGCTTACTGTTAT
Found at i:58264538 original size:48 final size:48
Alignment explanation
Indices: 58264467--58264566 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
58264457 GTTACCTGAC
* *
58264467 TTAACTCAACCAACTATACAAAACTGGGCCATAAAAATTTCAAAAAAT
1 TTAACTCAACCAACTATACAAAACCGAGCCATAAAAATTTCAAAAAAT
*
58264515 TTAACTCAACCAACTATACAAAACCGAGCCATAAAAATTTCAAACAAT
1 TTAACTCAACCAACTATACAAAACCGAGCCATAAAAATTTCAAAAAAT
58264563 TTAA
1 TTAA
58264567 AAACTTCTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.50, C:0.22, G:0.05, T:0.23
Consensus pattern (48 bp):
TTAACTCAACCAACTATACAAAACCGAGCCATAAAAATTTCAAAAAAT
Found at i:58273681 original size:20 final size:20
Alignment explanation
Indices: 58273656--58273696 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
58273646 AATTGTGAAG
58273656 TTCATAGATAAGATTACGAT
1 TTCATAGATAAGATTACGAT
58273676 TTCATAGATAAGATTACGAT
1 TTCATAGATAAGATTACGAT
58273696 T
1 T
58273697 GAAAATGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (20 bp):
TTCATAGATAAGATTACGAT
Found at i:58276323 original size:40 final size:40
Alignment explanation
Indices: 58276240--58276502 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
58276230 TTGAATGCTG
* * * * * *
58276240 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
58276280 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
58276320 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
58276360 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
58276400 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
58276440 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
58276479 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58276503 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:58276522 original size:79 final size:80
Alignment explanation
Indices: 58276279--58276537 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
58276269 AAGTGAATAT
* * * * * * *
58276279 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
58276343 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
58276359 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
58276424 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
58276439 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
58276503 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
58276518 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
58276538 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:58284246 original size:40 final size:40
Alignment explanation
Indices: 58284163--58284371 Score: 269
Period size: 40 Copynumber: 5.2 Consensus size: 40
58284153 TTGAATGCTG
* * * * * *
58284163 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
58284203 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
58284243 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
58284283 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
58284323 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
58284363 TCCGGGTTA
1 TCCGGGTTA
58284372 TGTCTGACTT
Statistics
Matches: 152, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 143 0.94
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:58288841 original size:56 final size:56
Alignment explanation
Indices: 58288755--58288874 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
58288745 ACAAGGGATG
58288755 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
58288811 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
58288867 ATGGGCAA
1 ATGGGCAA
58288875 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:58290102 original size:39 final size:40
Alignment explanation
Indices: 58290006--58290186 Score: 156
Period size: 40 Copynumber: 4.5 Consensus size: 40
58289996 ATGATTTCCG
* * * * *
58290006 GGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCA
*
58290045 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCA
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* * **
58290086 GGCTAAG-CCCGAAGGCATTGGTGCTAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* * *
58290125 GGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCA
* *
58290165 GGCTATGTCCCAAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
58290187 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 20, Indels: 13
0.78 0.14 0.09
Matches are distributed among these distances:
39 34 0.30
40 69 0.60
41 12 0.10
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:58290208 original size:79 final size:78
Alignment explanation
Indices: 58290039--58290209 Score: 168
Period size: 79 Copynumber: 2.2 Consensus size: 78
58290029 CTAAGTGACC
* * *
58290039 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCAT
** *
58290104 TGGTGCTAGTTACT
65 TGGAACGAGTTACT
* * * *
58290118 AAATCTGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGG
1 ATATC-CGGTTAAGATC-CGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCAAAGG
*
58290181 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
58290198 ATATCCGGTTAA
1 ATATCCGGTTAA
58290210 ATTTCAAAGG
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
78 4 0.05
79 47 0.64
80 23 0.31
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATT
GGAACGAGTTACT
Found at i:58294797 original size:28 final size:28
Alignment explanation
Indices: 58294765--58294829 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
58294755 ATTTACTAGA
*
58294765 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
58294793 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
58294821 ATACCCCTA
1 ATACCCCTA
58294830 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:58294993 original size:27 final size:27
Alignment explanation
Indices: 58294935--58295024 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
58294925 AGGAAGCGTC
58294935 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
58294963 CTGGTGGCCCTGCCACATATATCTATT
1 CTGGTGGCACTGCCACAAATATCTGTT
58294990 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
58295019 CTGGTG
1 CTGGTG
58295025 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:58305248 original size:18 final size:20
Alignment explanation
Indices: 58305222--58305261 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
58305212 AAACTTAATT
58305222 AAAACATAA-TTA-AAACAA
1 AAAACATAATTTACAAACAA
*
58305240 AAAAGATAATTTACAAACAA
1 AAAACATAATTTACAAACAA
58305260 AA
1 AA
58305262 TAATCGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.70, C:0.10, G:0.03, T:0.17
Consensus pattern (20 bp):
AAAACATAATTTACAAACAA
Found at i:58306424 original size:17 final size:18
Alignment explanation
Indices: 58306402--58306451 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 18
58306392 ACTTCTACTG
58306402 TTTTTGGTTTTTTTA-TT
1 TTTTTGGTTTTTTTATTT
58306419 TTTTT-GTTTGTTTTATTT
1 TTTTTGGTTT-TTTTATTT
58306437 TGGTTTTGGTTTTTT
1 T--TTTTGGTTTTTT
58306452 ATAGGCCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 3 0.11
20 7 0.25
21 4 0.14
ACGTcount: A:0.04, C:0.00, G:0.16, T:0.80
Consensus pattern (18 bp):
TTTTTGGTTTTTTTATTT
Found at i:58306427 original size:16 final size:17
Alignment explanation
Indices: 58306402--58306437 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
58306392 ACTTCTACTG
58306402 TTTTTGGTTT-TTTTAT
1 TTTTTGGTTTGTTTTAT
*
58306418 TTTTTTGTTTGTTTTAT
1 TTTTTGGTTTGTTTTAT
58306435 TTT
1 TTT
58306438 GGTTTTGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.83
Consensus pattern (17 bp):
TTTTTGGTTTGTTTTAT
Found at i:58306998 original size:15 final size:15
Alignment explanation
Indices: 58306975--58307016 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
58306965 TGATATTTTC
*
58306975 TTCTGGATTTCTTTA
1 TTCTGGATTTCTATA
58306990 TGT-TGGATTTCTATA
1 T-TCTGGATTTCTATA
58307005 TTCTGGATTTCT
1 TTCTGGATTTCT
58307017 CCGTTATGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.14, C:0.12, G:0.17, T:0.57
Consensus pattern (15 bp):
TTCTGGATTTCTATA
Found at i:58307632 original size:14 final size:15
Alignment explanation
Indices: 58307613--58307641 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58307603 AAAGTTAATA
58307613 TGGATT-TTCTTGTC
1 TGGATTATTCTTGTC
58307627 TGGATTATTCTTGTC
1 TGGATTATTCTTGTC
58307642 CTTGAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.55
Consensus pattern (15 bp):
TGGATTATTCTTGTC
Found at i:58312119 original size:46 final size:46
Alignment explanation
Indices: 58312069--58312244 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
58312059 TGGTTGAGCA
58312069 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58312115 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
58312160 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
58312208 CCCGAGCTCATTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58312245 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58312225 original size:93 final size:93
Alignment explanation
Indices: 58312066--58312237 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
58312056 GGATGGTTGA
* * *
58312066 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
58312131 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
58312159 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
58312224 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
58312238 CTTATGGGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58317365 original size:38 final size:38
Alignment explanation
Indices: 58317268--58317369 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 38
58317258 GCTTAAAGAA
* ** *
58317268 CCGCAGGCTTCGTGCTGGTAAAATATCCAGGTTAAATC
1 CCGCAGGCTTAGTGCTGGTATTATATCCAGGATAAATC
* *
58317306 CCGCAGGCTTTGTGCTAGTATTATAT-CAGGGATAAATC
1 CCGCAGGCTTAGTGCTGGTATTATATCCA-GGATAAATC
*
58317344 CCGCAGGCCTAGTGCTGGTATTATAT
1 CCGCAGGCTTAGTGCTGGTATTATAT
58317370 TCGGGCCTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
37 2 0.04
38 53 0.96
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (38 bp):
CCGCAGGCTTAGTGCTGGTATTATATCCAGGATAAATC
Found at i:58317428 original size:43 final size:43
Alignment explanation
Indices: 58317367--58317693 Score: 528
Period size: 43 Copynumber: 7.6 Consensus size: 43
58317357 GCTGGTATTA
* *
58317367 TATTCGGGCCTTCGTGCCTTGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
58317410 TATTCGGGCCTTCGTGCCTAGCAGGCTCCGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
58317453 TATTCGGGCCTTCGTGCCTAGCAGGCTCCGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
58317496 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
58317539 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
58317582 TATTCGGGCCTTCGTGCGTAGCAGGCTTCATGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
58317625 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
58317668 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
58317694 GTAATGCCGG
Statistics
Matches: 264, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 264 1.00
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:58322932 original size:27 final size:27
Alignment explanation
Indices: 58322778--58322915 Score: 195
Period size: 27 Copynumber: 5.1 Consensus size: 27
58322768 CCCTAATTGA
* * *
58322778 TAAAATGACTATTTTTCTCTTTTGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
58322805 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
58322832 TAAAATGATTATTTTACCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
58322859 TAAAATGACCATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
58322886 TAAAATAACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
58322913 TAA
1 TAA
58322916 GGTGACTCTT
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:58329005 original size:16 final size:16
Alignment explanation
Indices: 58328984--58329026 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
58328974 GTAGATCGGA
*
58328984 AAAAGCTGAAATGCTG
1 AAAAGCTGAAATACTG
** *
58329000 AAAAGCCAAAATATTG
1 AAAAGCTGAAATACTG
58329016 AAAAGCTGAAA
1 AAAAGCTGAAA
58329027 GTTTGAATAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.53, C:0.12, G:0.19, T:0.16
Consensus pattern (16 bp):
AAAAGCTGAAATACTG
Found at i:58329272 original size:29 final size:29
Alignment explanation
Indices: 58329239--58329328 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
58329229 TGAGCATGAC
*
58329239 TATAAATGTAAATTGGACCTGATGGGCCA
1 TATAAATGTAAATTGGACCTAATGGGCCA
* * *
58329268 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTAAATTGGACCTAATGGGCCA
* * * ** *
58329297 TGTGAATAT-AATTGGGTCTAGTGGGCCA
1 TATAAATGTAAATTGGACCTAATGGGCCA
58329325 TATA
1 TATA
58329329 CAGGTATGTG
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 18 0.37
29 31 0.63
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (29 bp):
TATAAATGTAAATTGGACCTAATGGGCCA
Found at i:58332742 original size:34 final size:34
Alignment explanation
Indices: 58332704--58332773 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
58332694 CCCCTTTCGA
58332704 TAATAGTAG-AAGTCTGGGCCTAAGCCCATTTCAG
1 TAATAGTAGCAA-TCTGGGCCTAAGCCCATTTCAG
* * *
58332738 TAATAGTGGCAATCTGGGCCTTAGCCCATTTTAG
1 TAATAGTAGCAATCTGGGCCTAAGCCCATTTCAG
58332772 TA
1 TA
58332774 TAGCATGTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 30 0.94
35 2 0.06
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (34 bp):
TAATAGTAGCAATCTGGGCCTAAGCCCATTTCAG
Found at i:58344401 original size:81 final size:81
Alignment explanation
Indices: 58344285--58344669 Score: 397
Period size: 81 Copynumber: 4.8 Consensus size: 81
58344275 CAGTTTACCT
* * * * *
58344285 TACAAGGGTATTTCGGTAATTTTACACTAT-AAGGGTATTTCGGTAATTTGA-AAAATCAAGGGT
1 TACAAGGGTATTTCGGTAATTTTACA-AATCGAGGGTATTTCGGTAATTTTACAAACT-AGGGGT
* **
58344348 GTTTCATTAATTTTACAAA
64 ATTTCGGTAATTTTAC-AA
* * * * *
58344367 TA-AGGGGTATCTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAACTGGGGGTAT
1 TACAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTAGGGGTAT
*
58344431 TTCGGTAATTTTACAC
66 TTCGGTAATTTTACAA
* * * ** *
58344447 TACAAGGGTATTTCAGTAACTTTACAAAT-TAGGGGTATTTCAATAATTTTACAAATTAGGGGTA
1 TACAAGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTTACAAACTAGGGGTA
* *
58344511 TTTTGGTAATTTTACAC
65 TTTCGGTAATTTTACAA
* * *
58344528 TAGAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTAT
1 TACAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTAGGGGTAT
*
58344593 TTTGGTAA-TTTACTAA
66 TTCGGTAATTTTAC-AA
* * * * *
58344609 T-TAGGGGTATTTTGGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAACT-GGGGT
1 TACAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTAGGGGT
58344670 TTTAACGACC
Statistics
Matches: 258, Mismatches: 39, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
79 5 0.02
80 61 0.24
81 185 0.72
82 7 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
TACAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTAGGGGTAT
TTCGGTAATTTTACAA
Found at i:58344661 original size:27 final size:27
Alignment explanation
Indices: 58344290--58344662 Score: 332
Period size: 27 Copynumber: 13.9 Consensus size: 27
58344280 TACCTTACAA
* *
58344290 GGGTATTTCGGTAATTTTACACTAT-AA
1 GGGTATTTCGGTAATTTTACA-AATCAG
* * *
58344317 GGGTATTTCGGTAATTTGAAAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCAG
* ** *
58344344 GGGTGTTTCATTAATTTTACAAATAAG
1 GGGTATTTCGGTAATTTTACAAATCAG
* *
58344371 GGGTATCTCGATAATTTTACAAATC-G
1 GGGTATTTCGGTAATTTTACAAATCAG
* *
58344397 AGGGTATTTCGATAATTTTACAAA-CTGG
1 -GGGTATTTCGGTAATTTTACAAATC-AG
* *
58344425 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CAG
* * *
58344452 GGGTATTTCAGTAACTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATCAG
** *
58344479 GGGTATTTCAATAATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATCAG
* *
58344506 GGGTATTTTGGTAATTTTAC-ACT-AG
1 GGGTATTTCGGTAATTTTACAAATCAG
*
58344531 AAGGGTATTTTGGTAATTTTACAAATC-G
1 --GGGTATTTCGGTAATTTTACAAATCAG
*
58344559 AGGGTATTTTGGTAATTTTACAAA-CTAG
1 -GGGTATTTCGGTAATTTTACAAATC-AG
* * *
58344587 GGGTATTTTGGTAA-TTTACTAATTAG
1 GGGTATTTCGGTAATTTTACAAATCAG
* *
58344613 GGGTATTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCAG
*
58344640 GGGTATTTCAGTAATTTTACAAA
1 GGGTATTTCGGTAATTTTACAAA
58344663 CTGGGGTTTT
Statistics
Matches: 292, Mismatches: 39, Indels: 30
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.01
26 31 0.11
27 251 0.86
28 8 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCAG
Found at i:58355160 original size:46 final size:46
Alignment explanation
Indices: 58354988--58355160 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
58354978 TGATATGTGC
* *
58354988 GCCAGTGTAAGACATGTCTG-GAACATGCATCGACCACATTGCGAGA
1 GCCAGTGTAAGACATGTCTGAG-ACATGCATCGGCCACGTTGCGAGA
* * * * *
58355034 GCCAGTGTAATACATGTCT-ATGACATACATCGGCCTCGAAATATGTG-TA
1 GCCAGTGTAAGACATGTCTGA-GACATGCATCGGCCACG---T-TGCGAGA
* *
58355083 -CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGTTGCGAGA
1 GCCAGTGTAAGACATGTCTGAGACATGCATCGGCCACGTTGCGAGA
*
58355128 GCCAGTGCAAGACATGTCTGAGACATGCATCGG
1 GCCAGTGTAAGACATGTCTGAGACATGCATCGG
58355161 GTTTGAGACA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 59 0.58
47 1 0.01
48 31 0.31
49 2 0.02
50 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGAGACATGCATCGGCCACGTTGCGAGA
Found at i:58355284 original size:140 final size:141
Alignment explanation
Indices: 58355031--58355301 Score: 341
Period size: 140 Copynumber: 1.9 Consensus size: 141
58355021 CCACATTGCG
* * *
58355031 AGAGCCAGTGTAATACATGTCTATGACATACATCGGCCTCGAAATATGTGTACTAGTGTAAGACA
1 AGAGCCAGTGTAAGACATGTCTAGGACATACATCAGCCTCGAAATATGTGTACTAGTGTAAGACA
* * * * *
58355096 TGTCTGGGACATGCATCGGCCACGTTGCGAGAGCCAGTGCAAGACATGTCTGAGACAT-GCATCG
66 TGTCTGGGACATGCATCAGCCACGATCCAAAAGCCAGTGCAAGACATGTCTGAGACATGGCATCG
58355160 GGTTTGAGACA
131 GGTTTGAGACA
* * * * * *
58355171 AGAGCCATTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATATGTGTGCTAGTGTAAGACA
1 AGAGCCAGTGTAAGACATGTCTAGGACATACATCAGCCTCGAAATATGTGTACTAGTGTAAGACA
* * * *
58355236 TGTTTGGGACAT-CATCAGCCAC-ATCCTAAAAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TGTCTGGGACATGCATCAGCCACGATCC-AAAAGCCAGTGCAAGA-CATGTCTGAGACATGGCAT
58355299 CGG
129 CGG
58355302 CATCGACACA
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
138 2 0.02
139 21 0.19
140 80 0.73
141 7 0.06
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (141 bp):
AGAGCCAGTGTAAGACATGTCTAGGACATACATCAGCCTCGAAATATGTGTACTAGTGTAAGACA
TGTCTGGGACATGCATCAGCCACGATCCAAAAGCCAGTGCAAGACATGTCTGAGACATGGCATCG
GGTTTGAGACA
Found at i:58358656 original size:19 final size:18
Alignment explanation
Indices: 58358627--58358666 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
58358617 GTATATGTTT
58358627 TAAATTTATTTACGTAGA
1 TAAATTTATTTACGTAGA
*
58358645 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTACGTAGA
58358664 TAA
1 TAA
58358667 GTTTTACTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (18 bp):
TAAATTTATTTACGTAGA
Found at i:58362559 original size:19 final size:19
Alignment explanation
Indices: 58362513--58362560 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
58362503 GTATATATTT
58362513 TAAA-TTTATTTAGCTAGA
1 TAAATTTTATTTAGCTAGA
*
58362531 TAAATCTTATTTAGGC-AGA
1 TAAATTTTATTTA-GCTAGA
*
58362550 TAAGTTTTATT
1 TAAATTTTATT
58362561 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 4 0.16
19 19 0.76
20 2 0.08
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGCTAGA
Found at i:58362636 original size:42 final size:42
Alignment explanation
Indices: 58362577--58362665 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
58362567 CTAGGAATAT
*
58362577 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGAAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGAAACTA
* *
58362619 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGAAACTA
58362661 TTTTC
1 TTTTC
58362666 CTAGTTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGAAACTA
Found at i:58370821 original size:47 final size:47
Alignment explanation
Indices: 58370750--58371292 Score: 912
Period size: 47 Copynumber: 11.6 Consensus size: 47
58370740 CACTTCGGGA
* * * * * *
58370750 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58370797 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58370844 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58370891 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58370938 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58370985 CCTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58371034 CTTATCACATATATACACATTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58371081 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58371127 CTTATCACATATATA-ACTTTCACATTCATCA-ATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58371172 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58371219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58371266 CTTATCACATACATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
58371293 TATTTAAATA
Statistics
Matches: 470, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
44 3 0.01
45 41 0.09
46 40 0.09
47 341 0.73
49 45 0.10
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58371043 original size:22 final size:22
Alignment explanation
Indices: 58371015--58371090 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
58371005 TTTCACATTC
58371015 ATCACATCGGCCATTCGGCCTT
1 ATCACATCGGCCATTCGGCCTT
*** * *
58371037 ATCACATATATACACATTC-ACATT
1 ATCAC--ATCGGC-CATTCGGCCTT
58371061 CATCACATCGGCCATTCGGCCTT
1 -ATCACATCGGCCATTCGGCCTT
58371084 ATCACAT
1 ATCACAT
58371091 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.44
23 6 0.15
24 6 0.15
25 10 0.26
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTCGGCCTT
Found at i:58371065 original size:25 final size:25
Alignment explanation
Indices: 58371037--58371115 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
58371027 ATTCGGCCTT
58371037 ATCACATATATACACATTCACATTC
1 ATCACATATATACACATTCACATTC
*** * *
58371062 ATCAC--ATCGGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
58371084 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
58371109 ATCACAT
1 ATCACAT
58371116 CGCCATTAGG
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 10 0.26
23 6 0.16
24 6 0.16
25 16 0.42
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:58375303 original size:16 final size:16
Alignment explanation
Indices: 58375284--58375319 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
58375274 GCCTACTAGG
58375284 CACGAAGGCCCGAATA
1 CACGAAGGCCCGAATA
58375300 CACGAAGGCCCGAATA
1 CACGAAGGCCCGAATA
58375316 CACG
1 CACG
58375320 TCACCAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.33, G:0.25, T:0.06
Consensus pattern (16 bp):
CACGAAGGCCCGAATA
Found at i:58375365 original size:40 final size:40
Alignment explanation
Indices: 58375333--58375562 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
58375323 CCAGCATGAT
* * * *
58375333 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
58375373 TGCTCTTCGGG--TTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
58375411 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
58375451 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58375491 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58375531 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
58375563 CTCAATTCTC
Statistics
Matches: 176, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 33 0.19
40 143 0.81
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:58377046 original size:47 final size:47
Alignment explanation
Indices: 58376975--58377462 Score: 805
Period size: 47 Copynumber: 10.6 Consensus size: 47
58376965 CCCTTCGGGA
* * * * * *
58376975 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58377022 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58377069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58377116 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377162 CTTATCACATATATACACTTTCACATTCATCACAT----C----GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377201 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58377248 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377295 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58377342 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377389 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377436 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
58377463 TATTCAAATA
Statistics
Matches: 418, Mismatches: 15, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
39 38 0.09
43 2 0.00
46 46 0.11
47 332 0.79
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58377283 original size:179 final size:183
Alignment explanation
Indices: 58376975--58377462 Score: 786
Period size: 179 Copynumber: 2.6 Consensus size: 183
58376965 CCCTTCGGGA
* * * * *
58376975 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCAT-AC---AG-CATTCGGCCTTATCACATATATACAC
58377040 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
61 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
58377105 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
126 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377162 CTTATCACATATATACACTTTCACATTCAT-CA-CA-TCGGCCTTATCACATATATACACTTTCA
1 CTTATCACATATATACACTTTCACATTCATACAGCATTCGGCCTTATCACATATATACACTTTCA
*
58377224 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
66 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
58377289 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58377342 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCAT-ACA---G-CATTCGGCCTTATCACATATATACAC
58377407 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
61 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
58377463 TATTCAAATA
Statistics
Matches: 285, Mismatches: 7, Indels: 17
0.92 0.02 0.06
Matches are distributed among these distances:
179 131 0.46
180 42 0.15
182 2 0.01
185 1 0.00
187 30 0.11
188 79 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (183 bp):
CTTATCACATATATACACTTTCACATTCATACAGCATTCGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58381401 original size:26 final size:26
Alignment explanation
Indices: 58381344--58381406 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
58381334 TTTTACTAAA
*
58381344 ATACCCCTGAGTATGAAAATTACCATT
1 ATACCCCT-AGTATGAAAATGACCATT
* *
58381371 TTACCCCTAG-ATGCAAAATGACCGTT
1 ATACCCCTAGTATG-AAAATGACCATT
58381397 ATACCCCTAG
1 ATACCCCTAG
58381407 GGTTAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 21 0.68
27 7 0.23
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGTATGAAAATGACCATT
Found at i:58386139 original size:27 final size:27
Alignment explanation
Indices: 58386095--58386267 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
58386085 TGGATAAGTT
* * *
58386095 GTAGAACTATCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
58386122 GTAGAATTACCGACATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
58386149 GTAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
58386176 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
58386203 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
58386230 GTAGAATTACCGATATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
58386257 GTAAAATTACC
1 GTAGAATTACC
58386268 ATTTTGCCCC
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:58386231 original size:81 final size:81
Alignment explanation
Indices: 58386096--58386267 Score: 254
Period size: 81 Copynumber: 2.1 Consensus size: 81
58386086 GGATAAGTTG
* * *
58386096 TAGAACTATCGAAATACCCCTGTAAGGTAGAATTACCGACATACCCCTATAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG
58386161 AAATACCCTTATAGGA
66 AAATACCCTTATAGGA
* * * *
58386177 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG
* *
58386242 ATATACCCTTATAGGG
66 AAATACCCTTATAGGA
*
58386258 TAAAATTACC
1 TAGAATTACC
58386268 ATTTTGCCCC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG
AAATACCCTTATAGGA
Found at i:58387057 original size:27 final size:26
Alignment explanation
Indices: 58387005--58387064 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58386995 CCACATATAT
*
58387005 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
58387031 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
58387058 ATATCTG
1 ATATCTG
58387065 GTAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:58391859 original size:28 final size:30
Alignment explanation
Indices: 58391787--58391860 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
58391777 TTCCAATCCT
* *
58391787 TGTGTGTCACAC-GACCGTGTCGCTAGGCCA
1 TGTGTGTCACACAG-TCATGTCGCTAGGCCA
58391817 TGTGTGTCACACAGTCATGTCGCTAGG-C-
1 TGTGTGTCACACAGTCATGTCGCTAGGCCA
58391845 TGTGTGTCACACAGTC
1 TGTGTGTCACACAGTC
58391861 GTGTGACAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 16 0.39
29 1 0.02
30 23 0.56
31 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.28, T:0.27
Consensus pattern (30 bp):
TGTGTGTCACACAGTCATGTCGCTAGGCCA
Found at i:58392638 original size:40 final size:40
Alignment explanation
Indices: 58392579--58392724 Score: 152
Period size: 40 Copynumber: 3.7 Consensus size: 40
58392569 TCAAAAGCAT
* * * * *
58392579 GTATATGCATTTATGGGTACCGAAGTACAAAAAAGGGTAT
1 GTATATGCATTCAGGGGTACCAAAGTACAAAAAAGGGCAC
* * *** *
58392619 GTATGTGCATTCAGAGGTACCAAAGT-GTGAACAGCGGCAC
1 GTATATGCATTCAGGGGTACCAAAGTACAAAAAAG-GGCAC
* *
58392659 GTATGTGCATTCAGGGGTACCAAAGTACAAAAAGGGGCAC
1 GTATATGCATTCAGGGGTACCAAAGTACAAAAAAGGGCAC
58392699 GTATATGCATTCAGGGGTA-CAAAGTA
1 GTATATGCATTCAGGGGTACCAAAGTA
58392725 TAAACAGAGA
Statistics
Matches: 86, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
39 11 0.13
40 72 0.84
41 3 0.03
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (40 bp):
GTATATGCATTCAGGGGTACCAAAGTACAAAAAAGGGCAC
Found at i:58392774 original size:78 final size:80
Alignment explanation
Indices: 58392593--58392789 Score: 236
Period size: 80 Copynumber: 2.5 Consensus size: 80
58392583 ATGCATTTAT
* * * * * * *
58392593 GGGTACCGAAGTACAAAAAAGGGTATGTATGTGCATTCAGAGGTACCAAAGTGTGAACAGCGGCA
1 GGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCAGAGGTACCAAAGTATAAACAGAGACA
* *
58392658 CGTATGTGCATTCAG
66 CATATGTACATTCAG
* * *
58392673 GGGTACCAAAGTACAAAAAGGGGCACGTATATGCATTCAGGGGTA-CAAAGTATAAACAGAGACA
1 GGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCAGAGGTACCAAAGTATAAACAGAGACA
58392737 CATATGTACATT-AG
66 CATATGTACATTCAG
* * * *
58392751 GTGTACCGAAGTATAAACAGGGGCACGTATGTGCTTTCA
1 GGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCA
58392790 TACAATAATT
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 35 0.35
79 25 0.25
80 39 0.39
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.21
Consensus pattern (80 bp):
GGGTACCGAAGTACAAAAAGGGGCACGTATGTGCATTCAGAGGTACCAAAGTATAAACAGAGACA
CATATGTACATTCAG
Found at i:58392782 original size:39 final size:40
Alignment explanation
Indices: 58392619--58392789 Score: 202
Period size: 40 Copynumber: 4.3 Consensus size: 40
58392609 AAAAGGGTAT
* * * *
58392619 GTATGTGCATTCAGAGGTACCAAAGTGTGAACAGCGGCAC
1 GTATGTGCATTCAGGGGTACCAAAGTATAAACAGGGGCAC
* *
58392659 GTATGTGCATTCAGGGGTACCAAAGTACAAAAAGGGGCAC
1 GTATGTGCATTCAGGGGTACCAAAGTATAAACAGGGGCAC
* * *
58392699 GTATATGCATTCAGGGGTA-CAAAGTATAAACAGAGACAC
1 GTATGTGCATTCAGGGGTACCAAAGTATAAACAGGGGCAC
* * * *
58392738 ATATGTACATT-AGGTGTACCGAAGTATAAACAGGGGCAC
1 GTATGTGCATTCAGGGGTACCAAAGTATAAACAGGGGCAC
*
58392777 GTATGTGCTTTCA
1 GTATGTGCATTCA
58392790 TACAATAATT
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
38 6 0.06
39 49 0.45
40 53 0.49
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (40 bp):
GTATGTGCATTCAGGGGTACCAAAGTATAAACAGGGGCAC
Found at i:58393395 original size:173 final size:173
Alignment explanation
Indices: 58393106--58393453 Score: 687
Period size: 173 Copynumber: 2.0 Consensus size: 173
58393096 TCTCACTACT
58393106 AGTCTATTCTATACATGCCATAAGATAATCCAAAACGTAGCAGTACCAAACAATGGATAGTGGTA
1 AGTCTATTCTATACATGCCATAAGATAATCCAAAACGTAGCAGTACCAAACAATGGATAGTGGTA
*
58393171 GTGTGACTAGTTGCTGATGATCCCCGAACCTGTAGCTTCGCAATGAGATCTATAAAACAGAGGAA
66 GTGTGACTAGTTGCTGATGATCCCCGAACCTGTAGCTTCGCAATGAGATCTATAAAACAAAGGAA
58393236 ACAGAGTAAACGGAGTAAGCATTACAATGCTTAGTAAGTTTTA
131 ACAGAGTAAACGGAGTAAGCATTACAATGCTTAGTAAGTTTTA
58393279 AGTCTATTCTATACATGCCATAAGATAATCCAAAACGTAGCAGTACCAAACAATGGATAGTGGTA
1 AGTCTATTCTATACATGCCATAAGATAATCCAAAACGTAGCAGTACCAAACAATGGATAGTGGTA
58393344 GTGTGACTAGTTGCTGATGATCCCCGAACCTGTAGCTTCGCAATGAGATCTATAAAACAAAGGAA
66 GTGTGACTAGTTGCTGATGATCCCCGAACCTGTAGCTTCGCAATGAGATCTATAAAACAAAGGAA
58393409 ACAGAGTAAACGGAGTAAGCATTACAATGCTTAGTAAGTTTTA
131 ACAGAGTAAACGGAGTAAGCATTACAATGCTTAGTAAGTTTTA
58393452 AG
1 AG
58393454 CAGTGTCAAC
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 174 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (173 bp):
AGTCTATTCTATACATGCCATAAGATAATCCAAAACGTAGCAGTACCAAACAATGGATAGTGGTA
GTGTGACTAGTTGCTGATGATCCCCGAACCTGTAGCTTCGCAATGAGATCTATAAAACAAAGGAA
ACAGAGTAAACGGAGTAAGCATTACAATGCTTAGTAAGTTTTA
Found at i:58393857 original size:37 final size:37
Alignment explanation
Indices: 58393807--58393885 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
58393797 TTATTACGAA
* * *
58393807 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
58393844 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
58393881 GTCTT
1 GTCTT
58393886 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:58394082 original size:47 final size:47
Alignment explanation
Indices: 58394004--58394655 Score: 1081
Period size: 47 Copynumber: 13.7 Consensus size: 47
58393994 CCCTTCGGGA
* * * * * *
58394004 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58394051 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394098 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58394145 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394239 CTTATCACATATATAAACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
58394288 CTCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58394337 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
58394384 CTTATCACATATATACACTTTCACATTCATCACATCAACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394431 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394478 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58394527 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394574 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58394621 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
58394656 AGAATCCTAA
Statistics
Matches: 573, Mismatches: 25, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 439 0.77
49 127 0.22
51 6 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58394451 original size:190 final size:190
Alignment explanation
Indices: 58394004--58394655 Score: 1103
Period size: 190 Copynumber: 3.4 Consensus size: 190
58393994 CCCTTCGGGA
* * * * * * * *
58394004 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58394069 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
58394132 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58394192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--AC
*
58394257 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
58394322 CATCGGCCATTAGGCCTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
58394384 CTTATCACATATATACACTTTCACATTCATCACATCAACCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58394449 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
58394514 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58394574 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
58394638 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
58394656 AGAATCCTAA
Statistics
Matches: 438, Mismatches: 21, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
188 53 0.12
189 1 0.00
190 241 0.55
192 143 0.33
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58394695 original size:143 final size:141
Alignment explanation
Indices: 58394004--58394655 Score: 973
Period size: 143 Copynumber: 4.6 Consensus size: 141
58393994 CCCTTCGGGA
* * * * * * * *
58394004 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* **
58394069 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAAGCAATATCACATATATACACTTTCACATTCATCACATC
58394134 GGCCATTAGGC
131 GGCCATTAGGC
*
58394145 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* **
58394210 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAAGCAATATCACATATAT--ACACTTTCACATTCATCACA
58394275 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
58394288 CTCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* * **
58394353 ACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAAGCAATATCACATATATACACTTTCACATTCATCACA
**
58394418 TCAACCATTAGGC
129 TCGGCCATTAGGC
58394431 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* **
58394496 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAAGCAATATCACATATATACACTTTCACATTCATCACA
*
58394561 TCGGCCATTAGAC
129 TCGGCCATTAGGC
* *
58394574 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
58394638 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
58394656 AGAATCCTAA
Statistics
Matches: 482, Mismatches: 22, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
140 1 0.00
141 169 0.35
143 214 0.44
145 98 0.20
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAAGCAATATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Done.