Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 177 of 332
Found at i:58397946 original size:16 final size:16
Alignment explanation
Indices: 58397925--58397960 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
58397915 TCCTTCGATA
58397925 ATTAAACTATCAAATC
1 ATTAAACTATCAAATC
58397941 ATTAAACTATCAAATC
1 ATTAAACTATCAAATC
58397957 ATTA
1 ATTA
58397961 CAATTCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTAAACTATCAAATC
Found at i:58404389 original size:40 final size:40
Alignment explanation
Indices: 58404305--58404487 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
58404295 TTGAATGCTG
* * * *
58404305 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
58404344 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
58404385 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATA-CAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
58404424 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
58404464 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58404488 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:58404456 original size:79 final size:81
Alignment explanation
Indices: 58404305--58404484 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
58404295 TTGAATGCTG
* * * *
58404305 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
* *
58404369 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
58404385 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACAAT-TCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACAATATCCGGACTAAGAT-CCGAAGGCA
58404446 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
58404464 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
58404485 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 25 0.28
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:58404508 original size:39 final size:39
Alignment explanation
Indices: 58404385--58404534 Score: 117
Period size: 39 Copynumber: 3.8 Consensus size: 39
58404375 AGTTATTAAT
* ** * *
58404385 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG--ATACAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTCTA-AAA
** *
58404424 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
58404464 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
58404504 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
58404535 GAGCTATATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.03
39 52 0.55
40 37 0.39
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:58404508 original size:79 final size:79
Alignment explanation
Indices: 58404358--58404524 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
58404348 GGACTAAGAT
* * * * **
58404358 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAA
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
* *
58404423 TTCCGGGTTAAGTC
66 TACCGGGCTAAGTC
* * *
58404437 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGG-CATTGAATGAGTTACT
1 CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACA
*
58404500 ATGACCGGGCTATGTC
65 AT-ACCGGGCTAAGTC
58404516 CCGAAGGCA
1 CCGAAGGCA
58404525 CTTGAACGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 14 0.19
79 60 0.81
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
TACCGGGCTAAGTC
Found at i:58412289 original size:40 final size:40
Alignment explanation
Indices: 58412205--58412388 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
58412195 TTGAATGTTG
* * * *
58412205 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
58412244 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
58412285 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
58412325 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
58412365 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58412389 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:58412409 original size:39 final size:39
Alignment explanation
Indices: 58412285--58412435 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
58412275 AGTTATTAAT
* ** * * *
58412285 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
58412325 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
58412365 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
58412405 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
58412436 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:58424181 original size:34 final size:34
Alignment explanation
Indices: 58424138--58424207 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
58424128 GTCGTTGCCT
58424138 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
1 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
58424172 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
1 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
58424206 AA
1 AA
58424208 TTCTTTGACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (34 bp):
AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
Found at i:58425468 original size:51 final size:49
Alignment explanation
Indices: 58425390--58425580 Score: 204
Period size: 50 Copynumber: 3.8 Consensus size: 49
58425380 TCTATTGTGA
58425390 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAA-TT
* * * **
58425440 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAATT
* * * *** *
58425490 AGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACTGGAGAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATT
* * *
58425540 GGTCGCATGTGTAGTACTAAGTGAAGGCTACTATGCGTACC
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
58425581 AGATAGCTTT
Statistics
Matches: 117, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 34 0.29
50 43 0.37
51 40 0.34
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATT
Found at i:58429039 original size:38 final size:38
Alignment explanation
Indices: 58428994--58429090 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 38
58428984 AGCTTAAAGA
* *
58428994 CCCGCAGGGTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGATAAAT
* **
58429032 CTCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGATAAAT
* *
58429070 CCCGCAGGCCTAGTGCTGGTA
1 CCCGCAGGCTTCGTGCTGGTA
58429091 TTATATTCGG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.27
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGATAAAT
Found at i:58429091 original size:38 final size:38
Alignment explanation
Indices: 58429006--58429101 Score: 129
Period size: 38 Copynumber: 2.5 Consensus size: 38
58428996 CGCAGGGTTC
** * * * *
58429006 GTGCTGGTAAAATATCCGGGTTAAATCTCGCAGGCTTC
1 GTGCTGGTATTATATCCGGGATAAATCCCGCAGGCCTA
58429044 GTGCTGGTATTATATCCGGGATAAATCCCGCAGGCCTA
1 GTGCTGGTATTATATCCGGGATAAATCCCGCAGGCCTA
*
58429082 GTGCTGGTATTATATTCGGG
1 GTGCTGGTATTATATCCGGG
58429102 CCTTCGTGCA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (38 bp):
GTGCTGGTATTATATCCGGGATAAATCCCGCAGGCCTA
Found at i:58429142 original size:43 final size:43
Alignment explanation
Indices: 58429094--58429205 Score: 215
Period size: 43 Copynumber: 2.6 Consensus size: 43
58429084 GCTGGTATTA
*
58429094 TATTCGGGCCTTCGTGCATAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
58429137 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
58429180 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
58429206 GTAATGCCAG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.11, C:0.26, G:0.34, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:58429611 original size:45 final size:46
Alignment explanation
Indices: 58429537--58429650 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 46
58429527 TTGATTTGAT
* * * *
58429537 TATTCAGGCCTTT-GAGCTTAGCAGACTATAATGTCGGT-AAGAT-A
1 TATTCAGGGCTTTCGAGCCTAGCAGGCTATAAAGTCGGTGAA-ATGA
58429581 CTATTC-GGGCTTTCGAGCCTAGCAGGCTATAAAGTCGGTGAAATGA
1 -TATTCAGGGCTTTCGAGCCTAGCAGGCTATAAAGTCGGTGAAATGA
*
58429627 TA-TCGGGGC--TCGAGCCTAGCAGGC
1 TATTCAGGGCTTTCGAGCCTAGCAGGC
58429651 GAAATGCCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
43 15 0.25
44 8 0.13
45 35 0.57
46 3 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (46 bp):
TATTCAGGGCTTTCGAGCCTAGCAGGCTATAAAGTCGGTGAAATGA
Found at i:58433518 original size:39 final size:39
Alignment explanation
Indices: 58433491--58433649 Score: 237
Period size: 39 Copynumber: 4.1 Consensus size: 39
58433481 TGTCCAGCAC
*
58433491 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
*
58433530 ATAGCCTGCGGACATAAAGTCCAGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* *
58433569 ATAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* * * * *
58433608 ATAGCCTACGGACCTGAAGTCTGAATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
58433647 ATA
1 ATA
58433650 TATATTCACA
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (39 bp):
ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
Found at i:58438052 original size:38 final size:38
Alignment explanation
Indices: 58437981--58438084 Score: 122
Period size: 38 Copynumber: 2.7 Consensus size: 38
58437971 TAAAGACCCA
* *
58437981 CAGGCTTCGTGCTGGTA-AACTATCCGGGCTAAATCCCG
1 CAGGCTTCGTGCTGGTATTA-TATCCGGGATAAATCCCG
*
58438019 -ACGGCTTCGTGCTGGTATTATATGCGGGATAAATCCCG
1 CA-GGCTTCGTGCTGGTATTATATCCGGGATAAATCCCG
* * *
58438057 CAGGCCTAGTGCTGGTATTATATTCGGG
1 CAGGCTTCGTGCTGGTATTATATCCGGG
58438085 CCTTCGTGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
37 1 0.02
38 54 0.95
39 2 0.04
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCG
Found at i:58438154 original size:43 final size:43
Alignment explanation
Indices: 58438077--58438158 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
58438067 GCTGGTATTA
** **
58438077 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGAGTAATGCCGGTGATGTG
58438120 TATTCGGGCCTTCGTGCCTAGCAGGAGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGAGTAATGCCGGTGA
58438159 AATGATATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.13, C:0.24, G:0.34, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGAGTAATGCCGGTGATGTG
Found at i:58443841 original size:29 final size:29
Alignment explanation
Indices: 58443798--58443872 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
58443788 AATGTGACTG
*
58443798 GGCCTAACGGGCCATATA-AATGTGATTTA
1 GGCCTAATGGGCCATATACAA-GTGATTTA
* * *
58443827 GGTCTAATGGGCCATATACAAGTGGTTTG
1 GGCCTAATGGGCCATATACAAGTGATTTA
*
58443856 GGCCTAATTGGCCATAT
1 GGCCTAATGGGCCATAT
58443873 GAGTATGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 37 0.95
30 2 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATACAAGTGATTTA
Found at i:58451320 original size:16 final size:16
Alignment explanation
Indices: 58451294--58451341 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
58451284 TATGAATCGG
*
58451294 CGAAA-GCTGAAATGC
1 CGAAATGCTGAAAAGC
58451309 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGC
58451325 CGAAATG-TCGAAAAGC
1 CGAAATGCT-GAAAAGC
58451341 C
1 C
58451342 AAAAGTTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 6 0.20
16 24 0.80
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.12
Consensus pattern (16 bp):
CGAAATGCTGAAAAGC
Found at i:58451661 original size:28 final size:29
Alignment explanation
Indices: 58451566--58451664 Score: 139
Period size: 29 Copynumber: 3.4 Consensus size: 29
58451556 AATGTGACTA
* * *
58451566 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAGTATGATTTG
58451595 GGCCTAATGGGCCATATACAG-ATGATTTG
1 GGCCTAATGGGCCATATA-AGTATGATTTG
58451624 GGCCTAATGGGCCATATAAGTATGA-TTG
1 GGCCTAATGGGCCATATAAGTATGATTTG
*
58451652 GGCTTAATGGGCC
1 GGCCTAATGGGCC
58451665 GGATACAGGT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
28 17 0.27
29 46 0.72
30 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAGTATGATTTG
Found at i:58455622 original size:25 final size:25
Alignment explanation
Indices: 58455580--58455634 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
58455570 AGTTATAAAC
* *
58455580 GGTAAGCTCTTCCAAGCTGAATAAT
1 GGTAAACTCCTCCAAGCTGAATAAT
* *
58455605 GGTAAACTCCTCCGAGCTGAATAGT
1 GGTAAACTCCTCCAAGCTGAATAAT
58455630 GGTAA
1 GGTAA
58455635 GCTCATATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (25 bp):
GGTAAACTCCTCCAAGCTGAATAAT
Found at i:58455646 original size:25 final size:25
Alignment explanation
Indices: 58455594--58455649 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
58455584 AGCTCTTCCA
* *
58455594 AGCTGAATAATGGTAAACTCCTCCG
1 AGCTGAATAATGGTAAACTCATACG
* * *
58455619 AGCTGAATAGTGGTAAGCTCATATG
1 AGCTGAATAATGGTAAACTCATACG
58455644 AGCTGA
1 AGCTGA
58455650 GCATCGGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (25 bp):
AGCTGAATAATGGTAAACTCATACG
Found at i:58462209 original size:18 final size:20
Alignment explanation
Indices: 58462173--58462219 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
58462163 AGTTGTAAGT
58462173 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
58462193 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
58462212 ATGATATA
1 AT-ATATA
58462220 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:58462684 original size:50 final size:50
Alignment explanation
Indices: 58462617--58462999 Score: 287
Period size: 50 Copynumber: 7.7 Consensus size: 50
58462607 TAAGACAGTT
*
58462617 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *** * *
58462667 TTAGGTCGCTTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * * * *
58462717 TTTCGATCACATGTATAGTACTAAGTGTAGGCTACT-TAT-T---AGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *
58462763 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * * ** *
58462813 ATAGGTCGCATGTGTAGTACCAAGTGCAGGGTAC-A-ATGCGTACTTG-TTAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACAT--GTACCAGATT--G
* * * * * *
58462864 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTATTACATGTATCAGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * * * * * * *
58462914 ATAAGTCACGTTTGTAGTACAAAGTGCAGGATACTACGTATACTAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *
58462964 ATAGGTCACATGTATAGTACTAAGTGCAAGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
58463000 TGCGTACCAG
Statistics
Matches: 252, Mismatches: 68, Indels: 26
0.73 0.20 0.08
Matches are distributed among these distances:
45 30 0.12
46 5 0.02
47 1 0.00
48 1 0.00
49 4 0.02
50 148 0.59
51 59 0.23
52 2 0.01
53 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
Found at i:58462882 original size:146 final size:149
Alignment explanation
Indices: 58462617--58463007 Score: 491
Period size: 146 Copynumber: 2.6 Consensus size: 149
58462607 TAAGACAGTT
* * *
58462617 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCTTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
** *
58462682 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTATAGTACTAAGTGTAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTATAGTACTAAGTGCAG
*
58462747 GC-TAC-T-TATTAGATGG
131 GCTTACATGTATCAGATGG
* * *
58462763 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * * ** * * *
58462828 AGTACCAAGTGCAGGGTACAATGCGTACTTGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTATAGTACTAAGTGCAG
58462893 GCTATTACATGTATCAGATGG
131 GC--TTACATGTATCAGATGG
* * * * * * * * *
58462914 ATAAGTCACGTTTGTAGTACAAAGTGCAGGATACTACGTATACTAGATTGATAGGTCACATGTAT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
*
58462979 AGTACTAAGTGCAAGCTACTATGCGTACC
66 AGTACTAAGTGCAGGCTACTATGCGTACC
58463008 AGAGAGCTTC
Statistics
Matches: 205, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
146 115 0.56
149 3 0.01
150 1 0.00
151 86 0.42
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (149 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTATAGTACTAAGTGCAG
GCTTACATGTATCAGATGG
Found at i:58463230 original size:16 final size:16
Alignment explanation
Indices: 58463209--58463240 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
58463199 AGAATGGAGT
58463209 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
58463225 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
58463241 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:58468507 original size:54 final size:54
Alignment explanation
Indices: 58468444--58468557 Score: 192
Period size: 54 Copynumber: 2.1 Consensus size: 54
58468434 TTAGATTGAT
*
58468444 AAATGACTGTTTTGCCCTTATATGGTAAAATGCTTGTTTTCCCCTCATAAGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTCCCCTCATAAGGTA
* * *
58468498 AAATGACTGTTTTTCCCTTATATGGTAAAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTCCCCTCATAAGGTA
58468552 AAATGA
1 AAATGA
58468558 TATGGTAATA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (54 bp):
AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTCCCCTCATAAGGTA
Found at i:58468558 original size:27 final size:27
Alignment explanation
Indices: 58468444--58468558 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 27
58468434 TTAGATTGAT
* *
58468444 AAATGACTGTTTTGCCCTTATATGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
* * *
58468471 AAATGCTTGTTTTCCCCTCATAAGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
* * *
58468498 AAATGACTGTTTTTCCCTTATATGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
58468525 AAATGATTGTTTTGCCCTCATGA-GGTA
1 AAATGATTGTTTTGCCCTCAT-ATGGTA
58468552 AAATGAT
1 AAATGAT
58468559 ATGGTAATAT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 73 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTCATATGGTA
Found at i:58468926 original size:18 final size:18
Alignment explanation
Indices: 58468903--58468949 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
58468893 GACTTATATT
58468903 CTGTTACTGTACTGATTA
1 CTGTTACTGTACTGATTA
* *
58468921 CTGTTACTGCACTGTTTA
1 CTGTTACTGTACTGATTA
*
58468939 TTGTTACTGTA
1 CTGTTACTGTA
58468950 TTGGGCCAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (18 bp):
CTGTTACTGTACTGATTA
Found at i:58472546 original size:27 final size:27
Alignment explanation
Indices: 58472480--58472564 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
58472470 AATTAATTTC
* * *
58472480 CCCTTATGTGATAAAATGTCTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
* * *
58472507 CCCTCATAAGGTAAAATGACTGTTTTT
1 CCCTTATATGGTAAAATGACTGTTTTG
* * *
58472534 CCCTTATATGGTAATATGATTATTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
58472561 CCCT
1 CCCT
58472565 ATGTGATGTA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTGTTTTG
Found at i:58472913 original size:18 final size:18
Alignment explanation
Indices: 58472890--58472928 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
58472880 TATTCTATTG
58472890 CTGCACTGATTACTGTTA
1 CTGCACTGATTACTGTTA
* *
58472908 CTGCACTGTTTATTGTTA
1 CTGCACTGATTACTGTTA
58472926 CTG
1 CTG
58472929 TATTGGGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (18 bp):
CTGCACTGATTACTGTTA
Found at i:58494587 original size:68 final size:68
Alignment explanation
Indices: 58494473--58494599 Score: 166
Period size: 68 Copynumber: 1.9 Consensus size: 68
58494463 CAGATGGTAT
* * * *
58494473 GTAGCTAGGTCACATGTGTAATACGAGATGTATACCATGTGTACAAGAGAACTACGAGACATTAT
1 GTAGCTAGGTCACATGGGTAACACGACATGTACACCATGTGTACAAGAGAACTACGAGACATTAT
58494538 GAG
66 GAG
* * * *
58494541 GTAGCTAGGTCGCATGGGTGACACTACATGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAACACGACATGTACACCATGT-GTACAAGAGAACTACGAGA
58494600 TAGATGTAGC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
68 49 0.98
69 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAACACGACATGTACACCATGTGTACAAGAGAACTACGAGACATTAT
GAG
Found at i:58505083 original size:47 final size:47
Alignment explanation
Indices: 58505015--58505131 Score: 209
Period size: 47 Copynumber: 2.5 Consensus size: 47
58505005 ACGTAAGTCG
* *
58505015 GTGTAATA-CATGTCTGGGACATGCAACGGCTACTGCATGATAGTTA
1 GTGTAAGACCATGTCTAGGACATGCAACGGCTACTGCATGATAGTTA
58505061 GTGTAAGACCATGTCTAGGACATGCAACGGCTACTGCATGATAGTTA
1 GTGTAAGACCATGTCTAGGACATGCAACGGCTACTGCATGATAGTTA
58505108 GTGTAAGACCATGTCTAGGACATG
1 GTGTAAGACCATGTCTAGGACATG
58505132 GCATCAACTT
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 7 0.10
47 61 0.90
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (47 bp):
GTGTAAGACCATGTCTAGGACATGCAACGGCTACTGCATGATAGTTA
Found at i:58507767 original size:43 final size:45
Alignment explanation
Indices: 58507699--58507816 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
58507689 ATTTTTCAAA
* * *
58507699 TCACCGGCATT-TCGCCTGCTAGGCTCGAGA-CCCGA-TA-TCATT
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAGTAGT-ATT
58507741 TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAGTAGTATT
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAGTAGTATT
*
58507786 TCACTC-GCATTATAGTCTGCTAAGCTC-AAAG
1 TCAC-CGGCATTATAGTCTGCTAGGCTCGAAAG
58507817 GCTCGAATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
42 11 0.16
43 16 0.24
44 9 0.13
45 29 0.43
46 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (45 bp):
TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAGTAGTATT
Found at i:58513712 original size:30 final size:31
Alignment explanation
Indices: 58513678--58513737 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
58513668 TTTTCGAGCA
* *
58513678 TAGGGGTAAAATAGTCATTTTGCC-AAAATC
1 TAGGGGCAAAATAGTCATTTTACCGAAAATC
* *
58513708 TAGGGGCAAAATGGTTATTTTACCGAAAAT
1 TAGGGGCAAAATAGTCATTTTACCGAAAAT
58513738 GTGAATTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.30
Consensus pattern (31 bp):
TAGGGGCAAAATAGTCATTTTACCGAAAATC
Found at i:58518788 original size:24 final size:23
Alignment explanation
Indices: 58518653--58518789 Score: 91
Period size: 23 Copynumber: 5.8 Consensus size: 23
58518643 GAGTCATGAT
* *
58518653 CAGTAAGCTCCTCCAGAGCTGATGAA
1 CAGTAAGCTCCTAC-GAGCT-A-AAA
* *
58518679 CAGTAAGCT-CTATTGAGCTGAAA
1 CAGTAAGCTCCTA-CGAGCTAAAA
* * *
58518702 CGGTAAGCT-TTATCAAGCT-AAA
1 CAGTAAGCTCCTA-CGAGCTAAAA
**
58518724 CAGTAAGCTTATACGAGCTAAAA
1 CAGTAAGCTCCTACGAGCTAAAA
* *
58518747 CAGTAAGCTCCAATGAGCTAAAAA
1 CAGTAAGCTCCTACGAGCT-AAAA
*
58518771 TAGTAAGCTCCTACGAGCT
1 CAGTAAGCTCCTACGAGCT
58518790 GATATCTCGG
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
22 16 0.18
23 37 0.42
24 20 0.22
25 7 0.08
26 9 0.10
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (23 bp):
CAGTAAGCTCCTACGAGCTAAAA
Found at i:58526975 original size:79 final size:81
Alignment explanation
Indices: 58526862--58527044 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
58526852 TACTCGTTCA
* *
58526862 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
58526925 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
58526942 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
58527005 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
58527021 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
58527045 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:58527044 original size:40 final size:40
Alignment explanation
Indices: 58526841--58527044 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
58526831 TCGAATTTAA
** *
58526841 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58526881 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58526921 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58526960 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
58527000 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58527040 CCGGA
1 CCGGA
58527045 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58528980 original size:12 final size:13
Alignment explanation
Indices: 58528952--58528984 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
58528942 TAATTTCTTT
58528952 TTCTCCATCTACC
1 TTCTCCATCTACC
*
58528965 TTCTCC-TCTTCC
1 TTCTCCATCTACC
58528977 TTCTCCAT
1 TTCTCCAT
58528985 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:58530079 original size:27 final size:28
Alignment explanation
Indices: 58530041--58530104 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
58530031 GATGTACTAG
*
58530041 ATACCCCTATGTATG-AAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
58530068 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
58530096 ATACCCCTA
1 ATACCCCTA
58530105 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 15 0.44
28 19 0.56
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:58530310 original size:29 final size:27
Alignment explanation
Indices: 58530210--58530299 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
58530200 AGGAAGCGTC
58530210 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
58530238 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
58530265 CTGGTGGCACTGCCACAGAATATCTGTAT
1 CTGGTGGCACTGCCACA-AATATCTGT-T
58530294 CTGGTG
1 CTGGTG
58530300 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:58530318 original size:55 final size:56
Alignment explanation
Indices: 58530210--58530324 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
58530200 AGGAAGCGTC
*
58530210 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
58530265 CTGGTGGC-ACTGCCACAGAA-TATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACA-AATTATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
58530321 CTGG
1 CTGG
58530325 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.54
56 23 0.44
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:58536795 original size:12 final size:13
Alignment explanation
Indices: 58536767--58536799 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
58536757 TTATTTCTTT
58536767 TTCTCCATCTACC
1 TTCTCCATCTACC
*
58536780 TTCTCC-TCTTCC
1 TTCTCCATCTACC
58536792 TTCTCCAT
1 TTCTCCAT
58536800 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:58537893 original size:28 final size:28
Alignment explanation
Indices: 58537861--58537925 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
58537851 AGATTACTAG
*
58537861 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
58537889 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
58537917 ATACCCCTA
1 ATACCCCTA
58537926 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:58538089 original size:27 final size:27
Alignment explanation
Indices: 58538031--58538120 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 27
58538021 AGGAAGCGTC
58538031 CTGGTGG-CTATGCCACAAATTATCTGTT
1 CTGGTGGCCT-TGCCACAAA-TATCTGTT
*
58538059 CTGGTGGCCTTGCCACATATATCTGTT
1 CTGGTGGCCTTGCCACAAATATCTGTT
58538086 CTGGTGGCAC-TGCCACAGAATATCTGTAT
1 CTGGTGGC-CTTGCCACA-AATATCTGT-T
58538115 CTGGTG
1 CTGGTG
58538121 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
27 23 0.41
28 24 0.43
29 9 0.16
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTTGCCACAAATATCTGTT
Found at i:58538131 original size:29 final size:28
Alignment explanation
Indices: 58538041--58538131 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 28
58538031 CTGGTGGCTA
*
58538041 TGCCACA-AATTATCTGTTCTGGTGGC-C
1 TGCCACAGAA-TATCTGTTCTGGTGACAC
* *
58538068 TTGCCACA-TATATCTGTTCTGGTGGCAC
1 -TGCCACAGAATATCTGTTCTGGTGACAC
*
58538096 TGCCACAGAATATCTGTATCTGGTGACTC
1 TGCCACAGAATATCTGT-TCTGGTGACAC
*
58538125 TGTCACA
1 TGCCACA
58538132 TTTTCTGTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
27 23 0.42
28 17 0.31
29 15 0.27
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAGAATATCTGTTCTGGTGACAC
Found at i:58538139 original size:55 final size:56
Alignment explanation
Indices: 58538031--58538145 Score: 132
Period size: 55 Copynumber: 2.1 Consensus size: 56
58538021 AGGAAGCGTC
*
58538031 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
* *
58538086 CTGGTGGC-ACTGCCACAGAA-TATCTGTATCTGGTGA-CTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACA-AATTATCTGT-TCTGGTGACCT-TGCCACATATATCTGTAT
58538142 CTGG
1 CTGG
58538146 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
Found at i:58543852 original size:40 final size:40
Alignment explanation
Indices: 58543783--58544068 Score: 466
Period size: 40 Copynumber: 7.2 Consensus size: 40
58543773 AACCCAAGTA
* * **
58543783 CCTTCAGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58543822 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58543862 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58543902 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
58543942 CCTTCAGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58543982 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
58544022 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58544062 CCTTCGG
1 CCTTCGG
58544069 ATCTTAGTCC
Statistics
Matches: 235, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
39 12 0.05
40 223 0.95
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58549591 original size:67 final size:64
Alignment explanation
Indices: 58549483--58549636 Score: 193
Period size: 64 Copynumber: 2.4 Consensus size: 64
58549473 AACACTCAAT
* * * * * *
58549483 ACCACCCATGTGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTA
1 ACCACCCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGT-T--TACACATA
58549547 GA
63 GA
* *
58549549 ACCACGCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGTTTACACATAGT
1 ACCACCCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGTTTACACATAGA
*
58549613 ATCACCCATGCGACCTAGCTACAT
1 ACCACCCATGCGACCTAGCTACAT
58549637 CATAATGTCT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
64 29 0.38
66 19 0.25
67 29 0.38
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (64 bp):
ACCACCCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGTTTACACATAGA
Found at i:58553905 original size:38 final size:38
Alignment explanation
Indices: 58553849--58554050 Score: 253
Period size: 38 Copynumber: 5.3 Consensus size: 38
58553839 ATATTCGATG
*
58553849 TATATCCGGGTTATATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
58553887 TATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
58553925 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* * * *
58553965 AATATCCGGGATAATTCCCGCAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
58554003 TATAAT-CGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TAT-ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
58554041 TATATTCGGG
1 TATATCCGGG
58554051 CCTTCGTGCT
Statistics
Matches: 142, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
37 2 0.01
38 102 0.72
39 10 0.07
40 28 0.20
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:58553954 original size:78 final size:76
Alignment explanation
Indices: 58553849--58554050 Score: 253
Period size: 78 Copynumber: 2.6 Consensus size: 76
58553839 ATATTCGATG
* * *
58553849 TATATCCGGGTTATATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCACAAGCTT
58553914 CATGCTGGTAT
66 CATGCTGGTAT
* ** * *
58553925 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGATAATTCCCGCAAGC
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCACAAGC
*
58553990 TTCGTGCTGGTAT
64 TTCATGCTGGTAT
* * * *
58554003 TATAAT-CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAT-ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
58554051 CCTTCGTGCT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
76 37 0.35
77 8 0.07
78 60 0.56
79 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (76 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCACAAGCTT
CATGCTGGTAT
Found at i:58554165 original size:43 final size:43
Alignment explanation
Indices: 58554043--58554167 Score: 178
Period size: 43 Copynumber: 2.9 Consensus size: 43
58554033 GCTGGTATTA
* * *
58554043 TATTCGGGCCTTCGTGCTTAGCAGCCTTCATGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
58554086 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* * *
58554129 TATTCGAGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGA
58554168 AATGATATGT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:58554551 original size:45 final size:44
Alignment explanation
Indices: 58554484--58554610 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 44
58554474 TTGACTTGAT
* * *
58554484 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGA-AC
* *
58554529 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGT--GAAC
1 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGAAC
* *
58554571 TGATATCGGGCC-TCGAGCCTAACAAGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGA
58554611 TTTGAGAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
42 11 0.16
43 18 0.26
44 7 0.10
45 33 0.48
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (44 bp):
TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGAAC
Found at i:58561071 original size:7 final size:7
Alignment explanation
Indices: 58561038--58561062 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58561028 ATATATTTTA
58561038 TTTTAAT
1 TTTTAAT
58561045 TTTTAAT
1 TTTTAAT
58561052 TTTTAAT
1 TTTTAAT
58561059 TTTT
1 TTTT
58561063 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTAAT
Found at i:58562904 original size:41 final size:41
Alignment explanation
Indices: 58562847--58562925 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
58562837 GTTAGAATTA
*
58562847 GTGTACCGGTGAATATAAATGGTTTTGTTTTAAAACTATTT
1 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTATTT
58562888 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTA
1 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTA
58562926 GTACTAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (41 bp):
GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTATTT
Found at i:58563285 original size:7 final size:8
Alignment explanation
Indices: 58563263--58563368 Score: 59
Period size: 9 Copynumber: 12.1 Consensus size: 8
58563253 ATTATTTATT
58563263 TTTAAAAA
1 TTTAAAAA
58563271 TTTAAAAA
1 TTTAAAAA
58563279 TTTAAAAAA
1 TTT-AAAAA
58563288 TTTCATAAAA
1 TTT-A-AAAA
*
58563298 TTGATAAAA
1 TTTA-AAAA
****
58563307 TTTATTTT
1 TTTAAAAA
58563315 TTTAAAAA
1 TTTAAAAA
*
58563323 TTAAAAAAA
1 TT-TAAAAA
58563332 TATTAAAATTA
1 T-TTAAAA--A
58563343 TTTAAAAA
1 TTTAAAAA
* *
58563351 GTAAAAAA
1 TTTAAAAA
58563359 TTATAAAAA
1 TT-TAAAAA
58563368 T
1 T
58563369 ATATATGTTT
Statistics
Matches: 74, Mismatches: 17, Indels: 13
0.71 0.16 0.12
Matches are distributed among these distances:
8 25 0.34
9 34 0.46
10 13 0.18
11 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (8 bp):
TTTAAAAA
Found at i:58563349 original size:28 final size:28
Alignment explanation
Indices: 58563315--58563368 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
58563305 AATTTATTTT
* *
58563315 TTTAAAAATTAAAAAAATATTAAAATTA
1 TTTAAAAAGTAAAAAAATATAAAAATTA
*
58563343 TTTAAAAAGTAAAAAATTATAAAAAT
1 TTTAAAAAGTAAAAAAATATAAAAAT
58563369 ATATATGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
TTTAAAAAGTAAAAAAATATAAAAATTA
Found at i:58563359 original size:52 final size:52
Alignment explanation
Indices: 58563261--58563360 Score: 116
Period size: 52 Copynumber: 1.9 Consensus size: 52
58563251 CAATTATTTA
* * *
58563261 TTTTTAAAAATTTAAAAATTTAAAAAATTTCATAAAATTGATAAAATTTATT
1 TTTTTAAAAATTAAAAAATTTAAAAAATTTCATAAAAGTGAAAAAATTTATT
*
58563313 TTTTTAAAAATTAAAAAAATATTAAAATTATTT-A-AAAAGT-AAAAAATT
1 TTTTTAAAAATT-AAAAAAT-TTAAAA-AATTTCATAAAAGTGAAAAAATT
58563361 ATAAAAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
52 19 0.46
53 11 0.27
54 7 0.17
55 4 0.10
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (52 bp):
TTTTTAAAAATTAAAAAATTTAAAAAATTTCATAAAAGTGAAAAAATTTATT
Found at i:58569564 original size:29 final size:30
Alignment explanation
Indices: 58569505--58569562 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
58569495 TCCGAGCCTT
*
58569505 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
58569535 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
58569563 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:58569792 original size:13 final size:13
Alignment explanation
Indices: 58569774--58569805 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
58569764 TTTCCAGCAA
58569774 TTATGAATTTATT
1 TTATGAATTTATT
58569787 TTATGAATTTATT
1 TTATGAATTTATT
*
58569800 TGATGA
1 TTATGA
58569806 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:58570013 original size:50 final size:50
Alignment explanation
Indices: 58569900--58570141 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
58569890 ATTTGGGTAA
* * *
58569900 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
58569956 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
58570006 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
58570056 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
58570106 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
58570142 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:58570089 original size:100 final size:103
Alignment explanation
Indices: 58569900--58570149 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
58569890 ATTTGGGTAA
58569900 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
58569965 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
58570006 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
58570068 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
58570106 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
58570150 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:58594870 original size:93 final size:93
Alignment explanation
Indices: 58594762--58594932 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
58594752 GCCCCTAAGT
* * *
58594762 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGGACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58594827 CGAGTTCGGATGCCTAGTTACATATCAC
66 CGAGTTCGGATGCCTAGTTACATATCAC
* * *
58594855 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58594920 CGAGTTCGGATGC
66 CGAGTTCGGATGC
58594933 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATATCAC
Found at i:58594929 original size:46 final size:46
Alignment explanation
Indices: 58594757--58594929 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
58594747 AACCCGCCCC
* * * *
58594757 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
58594803 TAAGTGGACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--A
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
58594851 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
58594896 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
58594930 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:58599905 original size:21 final size:22
Alignment explanation
Indices: 58599879--58599919 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
58599869 CACTTGACAC
*
58599879 AGGGGC-ACACGCTCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
58599900 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
58599920 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:58605112 original size:24 final size:23
Alignment explanation
Indices: 58605080--58605132 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
58605070 ATGTATTGGC
*
58605080 AAAAGTCGAAATACCGAAAAGCT
1 AAAAGTCGAAATACCAAAAAGCT
*
58605103 GAAAAGTCGAAATGCCAAAAAGCT
1 -AAAAGTCGAAATACCAAAAAGCT
58605127 AAAAGT
1 AAAAGT
58605133 TTGGCTACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.53, C:0.15, G:0.19, T:0.13
Consensus pattern (23 bp):
AAAAGTCGAAATACCAAAAAGCT
Found at i:58605343 original size:29 final size:29
Alignment explanation
Indices: 58605286--58605425 Score: 157
Period size: 29 Copynumber: 5.0 Consensus size: 29
58605276 TGGGCCCATA
* *
58605286 ATATGAATGTGA--TGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
58605313 ATATAAATGTGATTTGGGCCTAATGGACC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
58605342 ATATATA-G-G-TTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
58605368 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
58605397 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
58605425 A
1 A
58605426 GATACCGGTA
Statistics
Matches: 98, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
26 23 0.23
27 13 0.13
28 18 0.18
29 44 0.45
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:58605367 original size:55 final size:56
Alignment explanation
Indices: 58605298--58605425 Score: 177
Period size: 55 Copynumber: 2.3 Consensus size: 56
58605288 ATGAATGTGA
* * *
58605298 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGACCATAT-ATAGGTT
1 TGGGCCTAATGGGCCATATAAAGGTGATTTGGGCCTAATGGACCATATAATAGGAT
* * *
58605353 TGGGCCTAATGGGCCATATATAGGTGATTTGGGCCTAATGGGCCATATGAATATGAT
1 TGGGCCTAATGGGCCATATAAAGGTGATTTGGGCCTAATGGACCATAT-AATAGGAT
*
58605410 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
58605426 GATACCGGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
55 44 0.69
57 20 0.31
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (56 bp):
TGGGCCTAATGGGCCATATAAAGGTGATTTGGGCCTAATGGACCATATAATAGGAT
Found at i:58607419 original size:3 final size:3
Alignment explanation
Indices: 58607411--58607449 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
58607401 AAAAACAAAT
58607411 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
58607450 CCGTTGTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:58613007 original size:21 final size:22
Alignment explanation
Indices: 58612956--58613012 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
58612946 CTATAACAAA
58612956 AAAATTATATCATTAATACCCC
1 AAAATTATATCATTAATACCCC
58612978 AAAATTATATCATTAATACCCC
1 AAAATTATATCATTAATACCCC
*
58613000 -ACATTATA-CATTA
1 AAAATTATATCATTA
58613013 CAAATCTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 5 0.15
21 7 0.21
22 22 0.65
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATTATATCATTAATACCCC
Found at i:58631002 original size:46 final size:46
Alignment explanation
Indices: 58630952--58631127 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
58630942 TGGTTGAGCA
*
58630952 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58630998 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
58631043 CATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58631091 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58631128 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58631108 original size:93 final size:93
Alignment explanation
Indices: 58630949--58631120 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
58630939 GGATGGTTGA
* * * *
58630949 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58631014 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
58631042 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58631107 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
58631121 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58636398 original size:22 final size:20
Alignment explanation
Indices: 58636353--58636401 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
58636343 ACAGGCTGAG
58636353 CACACAGGCGTGTCCCAAGC
1 CACACAGGCGTGTCCCAAGC
58636373 CACACAGGCGTGTCCCAAGC
1 CACACAGGCGTGTCCCAAGC
58636393 CACACAGGC
1 CACACAGGC
58636402 ATGTGTGACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.41, G:0.24, T:0.08
Consensus pattern (20 bp):
CACACAGGCGTGTCCCAAGC
Found at i:58639451 original size:68 final size:67
Alignment explanation
Indices: 58639379--58639528 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
58639369 CATCATGTGT
* * * *
58639379 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
58639441 ATGTAG
62 ATGTAG
** * *
58639447 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
58639512 AG
66 AG
58639514 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
58639529 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:58639484 original size:64 final size:64
Alignment explanation
Indices: 58639403--58639586 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
58639393 AGACATTATG
* *
58639403 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
58639467 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
58639532 AA
63 AA
* * * *
58639534 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
58639587 CAACTATATG
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:58644511 original size:43 final size:42
Alignment explanation
Indices: 58644464--58644609 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 42
58644454 ATCGAGATGT
58644464 GATTACATGTAAGACCATGTCTGGAACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGG-ACATTGGCATTGTATTGA
* ** * * *
58644507 GATTACGTGTAAGAGAATGTCTAGACATTGGCATCAT-TAAT-C
1 GATTACATGTAAGACCATGTCTGGACATTGGCAT--TGTATTGA
* * * * *
58644549 GATTACGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCT-GGACATTGGCATTGTAT-TGA
58644592 GA-TAGCATGTAAGACCAT
1 GATTA-CATGTAAGACCAT
58644610 ATATGGGATA
Statistics
Matches: 80, Mismatches: 16, Indels: 14
0.73 0.15 0.13
Matches are distributed among these distances:
41 1 0.01
42 32 0.40
43 46 0.57
44 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGACATTGGCATTGTATTGA
Found at i:58644570 original size:42 final size:43
Alignment explanation
Indices: 58644464--58644584 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 43
58644454 ATCGAGATGT
* *
58644464 GATTACATGTAAGACCATGTCTGGAACATTGGCAT-TGTATTGA
1 GATTACGTGTAAGACCATGTCTGG-ACATTGGCATCTGTAATGA
** * *
58644507 GATTACGTGTAAGAGAATGTCTAGACATTGGCATCAT-TAAT-C
1 GATTACGTGTAAGACCATGTCTGGACATTGGCATC-TGTAATGA
* *
58644549 GATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATTACGTGTAAGACCATGTCT-GGACATTGGCATC
58644585 GATATGTGAT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.45
43 34 0.53
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGACATTGGCATCTGTAATGA
Found at i:58648130 original size:891 final size:891
Alignment explanation
Indices: 58645596--58648259 Score: 4368
Period size: 890 Copynumber: 3.0 Consensus size: 891
58645586 GAGACATGGG
* * * * * ** *
58645596 CGTGTGTGTCAGCCGTGTGCGATACATGGTCATGTTACACGG-CTGTGTGTCCCCTGGATTACAC
1 CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTC-GTGTGTCCCCTGGGGTACCC
* * * * * *
58645660 TTTCAAATTAAGGCAGTGTACCTTACAGTTTTGACACAG-CTAGACACACAGGCATGTCTATTGG
65 TTTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAG
* * * * * *
58645724 CCATGTGAGACACACAGCCTTGGCACATTGGCGTGTGTGGCCATTGCGAAAGGTACATGGGGTTG
130 CCATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTG
* * ** * * *
58645789 ACACACAGGCGTGTGGTTGACCGTGTGGCCAAGTCAGTAACCTCTTTATTTTTTTTTCACGGCCA
195 AGACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTA--TTTTTTTCACGGCCA
* * * * * * *
58645854 TGGAACATGGATGTGTCTTCAGCCATGTAGTACAAATCAATATGTATGCCCTATTTTCACACGGC
258 TGGAACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGC
* * * * *
58645919 CTGTGACATGGGTGTGTCTGGTAGCTGTGTGAGGCATACGGCCTGTTCATATAGGG-GTGTGACC
323 CTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGGCACACGGCCTGTTCATA-CGGGTGTGTGACC
58645983 TTTAAATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAAC
387 TTTAAATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAAC
58646048 CTCTTCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGG
452 CTCTTCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGG
58646113 ATTTTGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCC
517 ATTTTGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCC
*
58646178 TATTCTAGTGACGGATACAAGTTAGAGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATT
582 TATTCTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATT
* *
58646243 CACTAATCATAAAAGTCTAAAGTATTTGACGACTCAAAAGGATTTGAACCTATGACAAAGGAGAT
647 CACTGATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGAT
*
58646308 GGTTGGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCAACTGGGAAAGGTGAATGTGGTT
712 GGTTGGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACCTGGGAAAGGTGAATGTGGTT
*
58646373 GCCGATGCTTTGAGTAGGAAGTCATTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATC
777 GCCGATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATC
*
58646438 AGATGATGGTTTGATTCTACCTGATTTGGGAGCTAGACCGATGTTTTAGA
842 AGATGATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
* *
58646488 TGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTAGGGTACCCT
1 CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
* *
58646553 TTCGAATTAGGGTAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
66 TTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
* * * *
58646618 CATGTGAGACATACAACCTTGGCACATGGGTGTGTGTGGCCATTTCAAAAGGTTCACGAGTTTGA
131 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
* *
58646683 GAGACGGGCGTGTGGTCAATTGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
196 GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
* *
58646748 AACAC-GACGTGTCTTCGGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCAAACGGCCTG
261 AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
*
58646812 TGACACGGGCGTGTCTGGTAGCCGTGTGAGGCACACAGCCTGTTCATACGGGTGTGTGACCTTTA
326 TGACACGGGCGTGTCTGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
*
58646877 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAACTGTTATCAATTTAGCCCCGAACCTCT
391 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACCTCT
* *
58646942 TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATTAATAGATTT
456 TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGATTT
58647007 TGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
521 TGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
*
58647072 CTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGTGAGAAATGTCGAGTATTCACT
586 CTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTCACT
* *
58647137 GATCATAAAAGTTTAAAGTATTTGATGACTCAAAAAGATTTGAACCTATGACAAAGGAGATGGTT
651 GATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATGGTT
*
58647202 GGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACCTGGGAAAGGTGAATGTGGTTGTCG
716 GGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACCTGGGAAAGGTGAATGTGGTTGCCG
*
58647267 ATGCTTTGAGTAGGAAGTCGTTGTTTGCCTTGAGGGCTATGAACACTCAGTTGGCTTTATCAGAT
781 ATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCAGAT
58647332 GATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
846 GATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
*
58647378 CGTGTGTGTCAACCATGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
1 CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
* *
58647443 TTCGAATTAAGGCAGTATACATTACAGTTTTGACACGGCCTAGACACACGGGCGTGCCTATTAGC
66 TTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
58647508 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
131 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
* *
58647573 GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTGAGTAACCTCTTTATTTTTTTCACGGCCATAG
196 GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
* *
58647638 AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGACTA
261 AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
* *
58647703 TGACACAGGCGTGTCAGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
326 TGACACGGGCGTGTCTGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
*
58647768 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGTCCCGAACCTCT
391 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACCTCT
** * * *
58647833 TCTAAGCATGTTTTAAGGTCTCGTAGGACCAGAGAAGGGACAATATGACTAAGATGAATGGATTT
456 TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGATTT
* * *
58647898 TGATTATGATTTCAATAATGTATATGAATGATGTGTATTATCCGGTGATGCCTCATAACCCTATT
521 TGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
* * * * *
58647963 -TTGACGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGACGAGACATGTCGAGTATTTAC
586 CTAG-TGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTCAC
* *
58648027 TGGTCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTAAACCTATGACAAAGGAGATGGT
650 TGATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATGGT
* * *
58648092 TGGAGTTGTTAAAAGATTACGAGGTAGTGATTGACTACCACCAGGGAAAGG-GAATATGGTTGCC
715 TGGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACCTGGGAAAGGTGAATGTGGTTGCC
*
58648156 GATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTTAGTTGGCTTTATCAGA
780 GATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCAGA
* *
58648221 TGATGGTTTGATTCTAGCTGAGTTGAGAGCTAGACCGAT
845 TGATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGAT
58648260 ATTTCACCAA
Statistics
Matches: 1649, Mismatches: 118, Indels: 12
0.93 0.07 0.01
Matches are distributed among these distances:
889 3 0.00
890 956 0.58
891 487 0.30
892 86 0.05
893 117 0.07
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (891 bp):
CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
TTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
TGACACGGGCGTGTCTGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACCTCT
TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGATTT
TGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
CTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTCACT
GATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATGGTT
GGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACCTGGGAAAGGTGAATGTGGTTGCCG
ATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCAGAT
GATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
Found at i:58650993 original size:27 final size:27
Alignment explanation
Indices: 58650965--58651295 Score: 331
Period size: 27 Copynumber: 12.3 Consensus size: 27
58650955 TTATAGTACA
*
58650965 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
58650992 AGGATATTT-TAGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
58651019 AGGGTGTTTCTG-TAATTTTAAAAATCG
1 AGGGTATTTC-GATAATTTTACAAATCG
*
58651046 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
58651073 AGGGTATTTC-AGTAATTTTACAAAAT-G
1 AGGGTATTTCGA-TAATTTTAC-AAATCG
* * ** *
58651100 AAGGTATTT-TAGTAATTCCAC-GATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
58651126 AGTGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
58651153 GGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
58651180 AGGGTATTTC-AGTAATTTTACAAAAT-G
1 AGGGTATTTCGA-TAATTTTAC-AAATCG
* **
58651207 AGGGTATTT-TAGTAATTCCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
58651233 AGTGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
58651260 GGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
58651287 AGGGTATTT
1 AGGGTATTT
58651296 TAGTAATTTC
Statistics
Matches: 251, Mismatches: 37, Indels: 32
0.78 0.12 0.10
Matches are distributed among these distances:
25 5 0.02
26 35 0.14
27 203 0.81
28 8 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:58651173 original size:107 final size:107
Alignment explanation
Indices: 58650965--58651304 Score: 522
Period size: 107 Copynumber: 3.2 Consensus size: 107
58650955 TTATAGTACA
* ** * *
58650965 AGGGTATTTC-GATAATTTTAC-AAATCAAGGATATTTTAGTAATTTTACAAATCGAGGGTGTTT
1 AGGGTATTTCAG-TAATTTTACAAAATGAAGG-TATTTTAGTAATTCCAC-AATCGAGTGTATTT
* * * *
58651028 CTGTAATTTTAAAAATCGAGGGTGTTTCGATAATTTTACAAATCG
63 CGGTAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCG
*
58651073 AGGGTATTTCAGTAATTTTACAAAATGAAGGTATTTTAGTAATTCCACGATCGAGTGTATTTCGG
1 AGGGTATTTCAGTAATTTTACAAAATGAAGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
58651138 TAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCG
66 TAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCG
*
58651180 AGGGTATTTCAGTAATTTTACAAAATGAGGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
1 AGGGTATTTCAGTAATTTTACAAAATGAAGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
*
58651245 TAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCG
66 TAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCG
*
58651287 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
58651305 CTCTTTATTA
Statistics
Matches: 216, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
107 173 0.80
108 34 0.16
109 9 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (107 bp):
AGGGTATTTCAGTAATTTTACAAAATGAAGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
TAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCG
Found at i:58651232 original size:80 final size:82
Alignment explanation
Indices: 58650977--58651304 Score: 336
Period size: 80 Copynumber: 4.1 Consensus size: 82
58650967 GGTATTTCGA
* * * * *
58650977 TAATTTTACAAATCAAGGATATTT-TAGTAATTTTACAAATCGAGGGTGTTTCTGTAATTTTA-A
1 TAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACA
* *
58651040 AAATCGAGGGT-GTTTCG
65 AAATCGAGGGTATTTTAG
* * *
58651057 ATAATTTTACAAATCGAGGGTATTTC-AGTAATTTTACAAAAT-GAAGGTATTTTAGTAA--TTC
1 -TAATTTTACAAATCGAGGGTATTTCGA-TAATTTTAC-AAATCGAGGGTATTTCAGTAATTTTA
** * **
58651118 CACGATCGAGTGTATTTCGG
63 CAAAATCGAGGGTATTTTAG
*
58651138 TAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
58651203 AAT-GAGGGTATTTTAG
66 AATCGAGGGTATTTTAG
** * * * *
58651219 TAATTCCAC-AATCGAGTGTATTTCGGTAATTTTACAAATTGGGGGTATTTC-GATAATTTTAC-
1 TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG-TAATTTTACA
58651281 AAATCGAGGGTATTTTAG
65 AAATCGAGGGTATTTTAG
58651299 TAATTT
1 TAATTT
58651305 CTCTTTATTA
Statistics
Matches: 207, Mismatches: 30, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
79 11 0.05
80 120 0.58
81 66 0.32
82 10 0.05
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (82 bp):
TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
AATCGAGGGTATTTTAG
Found at i:58651625 original size:28 final size:28
Alignment explanation
Indices: 58651588--58651676 Score: 124
Period size: 28 Copynumber: 3.2 Consensus size: 28
58651578 TGGCCCCTTT
58651588 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
*
58651616 AGGCCCAATCTCGTTCACATGGCCTATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * * * *
58651644 AAGCCAAATCACATTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
58651672 AGGCC
1 AGGCC
58651677 TAATTACTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:58656580 original size:40 final size:39
Alignment explanation
Indices: 58656420--58656674 Score: 234
Period size: 39 Copynumber: 6.5 Consensus size: 39
58656410 AAATCACGTA
* * * **
58656420 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCGCACAAATG
* * * *
58656459 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAAATG
* *
58656498 CCTTCGGGACTTAACCCGGATTTAATACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAATG
*
58656537 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCACAAATG
*
58656577 CCTTCGGG-CTTAACCCGGAATT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCACAAATG
** * * *
58656615 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAAATG
*
58656655 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
58656675 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 26, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
37 2 0.01
38 27 0.15
39 91 0.51
40 48 0.27
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAATG
Found at i:58656683 original size:41 final size:41
Alignment explanation
Indices: 58656606--58656683 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
58656596 ATTGTATCTC
* * *
58656606 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
58656647 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
58656684 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:58664486 original size:40 final size:39
Alignment explanation
Indices: 58664326--58664581 Score: 236
Period size: 39 Copynumber: 6.5 Consensus size: 39
58664316 AAATCACGTA
* * * **
58664326 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCGCACAAATG
* * * *
58664365 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAAATG
* *
58664404 CCTTCGGGACTTAACCCGGATTTAATACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAATG
*
58664443 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCACAAATG
*
58664483 CCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCACAAATG
** * *
58664523 CCTTC-GGATCTTAGTCCGGA-TTATTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAAATG
*
58664562 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
58664582 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
38 9 0.05
39 89 0.49
40 80 0.44
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAATG
Found at i:58664542 original size:80 final size:78
Alignment explanation
Indices: 58664359--58664581 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 78
58664349 GCTCCTCGTT
* * *
58664359 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
58664424 TTTAATACTCGCA
66 TTTAATACTCGCA
* * * * *
58664437 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGG
*
58664502 AATTT-GTATCTCGCA
65 -ATTTAATA-CTCGCA
* * * * * *
58664517 CAAATGCCTTC-GGATCTTAGTCCGGA-TTATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTAACCCG
58664580 GA
64 GA
58664582 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 36 0.30
79 52 0.43
80 32 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:58666144 original size:15 final size:15
Alignment explanation
Indices: 58666123--58666160 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
58666113 CCCATACTAA
*
58666123 AGGCCCAATACTTGT
1 AGGCCCAATACTTCT
*
58666138 TGGCCCAATACTTCT
1 AGGCCCAATACTTCT
58666153 AGGCCCAA
1 AGGCCCAA
58666161 ATTCGAGGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (15 bp):
AGGCCCAATACTTCT
Found at i:58667809 original size:49 final size:48
Alignment explanation
Indices: 58667552--58667824 Score: 231
Period size: 49 Copynumber: 5.8 Consensus size: 48
58667542 TCATTTGTGT
* * * **
58667552 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCAACC-ACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTATAAGATGA
* * * * * *
58667598 GAGCCAGTATAAGACAACGTCTGGGACATGCATCAGCCTCGTGAGGT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCT-ATAAGATGA
* *
58667646 -AGCCATTGTAAGA-CATGTCTGGGACATGCATCAG-CTATGAGATG-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTATAAGATGA
* * * * * *
58667690 TA-CCAGTGTATGACCATGTCAGGGACATGGCATCGGCACGATTATG-TGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGC-CTA-TAAGATGA
* *
58667739 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTTAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTATAAGATGA
*
58667788 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAG
58667825 TACTTTACCC
Statistics
Matches: 180, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
44 14 0.08
45 16 0.09
46 37 0.21
47 31 0.17
48 8 0.04
49 43 0.24
50 31 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTATAAGATGA
Found at i:58673306 original size:46 final size:45
Alignment explanation
Indices: 58673155--58673419 Score: 198
Period size: 46 Copynumber: 5.7 Consensus size: 45
58673145 AGGGTATAAT
*
58673155 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCGA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCT-CGA
* *
58673205 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTTGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-A
* **
58673249 GCCGATGCATGTCCTAGACATGTCTTACGGTGGCTTACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA
* * * * * * *
58673294 GGCTGATGCATGTCCTAGACATGTTTTGCACTAGCTCT-CGTCTCAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGA
* * * *
58673340 TGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCG-A
* *
58673389 GTCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
58673420 AGCATACACA
Statistics
Matches: 176, Mismatches: 30, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 36 0.20
45 1 0.01
46 57 0.32
47 25 0.14
48 34 0.19
49 15 0.09
50 7 0.04
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA
Found at i:58673398 original size:94 final size:92
Alignment explanation
Indices: 58673152--58673423 Score: 286
Period size: 94 Copynumber: 2.9 Consensus size: 92
58673142 CATAGGGTAT
* *
58673152 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCGAGCCGATGCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT--GAGGCGATGCATGT
* *
58673217 CCCAGACATGTCTTACACTAGCACATCTTG
63 CCTAGACATGTCTTACACTAGCACATCTTC
* * ** *
58673247 TA-GCCGATG-CATGTCCTAGACAT-GTCTTACGGTGGCT-TACAT-CTCGAGGCTGATGCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GAGGC-GATGCATGT
* * *
58673307 CCTAGACATGTTTTGCACTAGCTC-TCGTCTC
63 CCTAGACATGTCTTACACTAGCACATC-T-TC
* * *
58673338 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGG-CGATGCATGTCC
58673403 TAGACATGTCTTACACTAGCA
65 TAGACATGTCTTACACTAGCA
58673424 TACACACATC
Statistics
Matches: 144, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
89 7 0.05
90 31 0.22
91 3 0.02
92 20 0.14
93 25 0.17
94 54 0.38
95 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCGATGCATGTCCT
AGACATGTCTTACACTAGCACATCTTC
Found at i:58678556 original size:94 final size:93
Alignment explanation
Indices: 58678397--58678574 Score: 277
Period size: 94 Copynumber: 1.9 Consensus size: 93
58678387 CATAGGGTAT
* ** *
58678397 AATGCCAATGCCATTTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGTCGATGCATGTCCT
1 AATGCCAATGCCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCT
58678462 AGACATGTCTTACACTAGCTCTCGTCTC
66 AGACATGTCTTACACTAGCTCTCGTCTC
* *
58678490 AATGCCAATGCCATGTCCCAGACATGGTTTTACACTGGC-TATCATAATGTGGCCGATGCATGTC
1 AATGCCAATGCCATGTCCCAGACAT-GTCTTACACTGGCTTA-CATAATGAGGCCGATGCATGTC
58678554 CTAGACATGTCTTACACTAGC
64 CTAGACATGTCTTACACTAGC
58678575 ACACACACAT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
93 26 0.34
94 51 0.66
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (93 bp):
AATGCCAATGCCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCT
AGACATGTCTTACACTAGCTCTCGTCTC
Found at i:58691102 original size:48 final size:48
Alignment explanation
Indices: 58691031--58691264 Score: 219
Period size: 48 Copynumber: 5.0 Consensus size: 48
58691021 CATTAGGGTT
* * *
58691031 ATATGCGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCA
1 ATATGTGATACCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* ** * * *
58691079 ATATGTAATTTCGTGTAAGACCATAGT-TGGG-C-T---ATCGGCATCG
1 ATATGTGATACCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCA
*
58691122 ATATGTGATACCAAGTAAGACCATGTCTGGGACATGGCATTGGCATCA
1 ATATGTGATACCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* ** * * *
58691170 ATCTACGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCG
1 ATATGTGATACCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* * * * * *
58691218 ATAGGTGATCCCATGTAAGACCATATCCGGGATATGGCATTAGCATC
1 ATATGTGATACCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
58691265 CTACCATGTG
Statistics
Matches: 148, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.01
43 30 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 110 0.74
49 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (48 bp):
ATATGTGATACCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA
Found at i:58691187 original size:91 final size:94
Alignment explanation
Indices: 58691031--58691264 Score: 251
Period size: 91 Copynumber: 2.5 Consensus size: 94
58691021 CATTAGGGTT
* * ** ** *
58691031 ATATGCGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCAATATGTAATTTCGTGTA
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTA
58691096 AGACCATAGT-TGGG-C-T-ATCGGCATCG
66 AGACCAT-GTCTGGGACATGATCGGCATCG
* * * *
58691122 ATATGTGATACCAAGTAAGACCATGTCTGGGACATGGCATTGGCATCAATCTACGATCCCATGTA
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTA
* *
58691187 AGACTATGTCTGGGACATGGCATTGGCATCG
66 AGACCATGTCTGGGACAT-G-ATCGGCATCG
* * * * *
58691218 ATAGGTGATCCCATGTAAGACCATATCCGGGATATGGCATTAGCATC
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
58691265 CTACCATGTG
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
90 2 0.02
91 64 0.55
92 1 0.01
93 1 0.01
96 49 0.42
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (94 bp):
ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTA
AGACCATGTCTGGGACATGATCGGCATCG
Found at i:58694872 original size:44 final size:43
Alignment explanation
Indices: 58694810--58694894 Score: 143
Period size: 44 Copynumber: 2.0 Consensus size: 43
58694800 CCTTGTAGTT
58694810 AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
1 AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
* *
58694853 AAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCAC
1 AAAGCTA-CATTCTTCACAAAATGGCCTTCACATAGTACCAC
58694895 ACTTGAGTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 7 0.18
44 32 0.82
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (43 bp):
AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
Found at i:58705053 original size:51 final size:49
Alignment explanation
Indices: 58704971--58705145 Score: 201
Period size: 52 Copynumber: 3.5 Consensus size: 49
58704961 ATACCCGCTA
* * *
58704971 GCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGT
1 GCCTTCACATAGTACCACACTTGTA-CCAAAGCTACCTTCTTCACAAAGT
* * *
58705021 GACGTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAATGTT
1 G-CCTTCACATAGTACCACACTTGT-ACCAAAGCTA-CCTTCTTCACAAAG-T
* *
58705074 GCCTTCACATAGTACCACACTTGTAACC-AAGCTATCTT-TTCTCAAAGT
1 GCCTTCACATAGTACCACACTTGT-ACCAAAGCTACCTTCTTCACAAAGT
58705122 GGCCTTCACATAGTACCACACTTG
1 -GCCTTCACATAGTACCACACTTG
58705146 AGTCACTAGT
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
48 1 0.01
49 30 0.28
50 3 0.03
51 34 0.31
52 38 0.35
53 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (49 bp):
GCCTTCACATAGTACCACACTTGTACCAAAGCTACCTTCTTCACAAAGT
Found at i:58705086 original size:52 final size:50
Alignment explanation
Indices: 58704971--58705145 Score: 198
Period size: 51 Copynumber: 3.5 Consensus size: 50
58704961 ATACCCGCTA
* * * *
58704971 GCCTGCACATAGTACCACCCTTGTAGTCAAAGCTA-CCTTCTTCACAAAG-T
1 GCCTTCACATAGTACCACACTTGTA-CCAAAGCTATCTTTCTTCAC-AAGTT
*
58705021 GACGTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAATGTT
1 G-CCTTCACATAGTACCACACTTGT-ACCAAAGCTATCTTTCTTCACAA-GTT
*
58705074 GCCTTCACATAGTACCACACTTGTAACC-AAGCTATCTTT-TCTCA-AAGTG
1 GCCTTCACATAGTACCACACTTGT-ACCAAAGCTATCTTTCT-TCACAAGTT
58705123 GCCTTCACATAGTACCACACTTG
1 GCCTTCACATAGTACCACACTTG
58705146 AGTCACTAGT
Statistics
Matches: 111, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
49 25 0.23
50 4 0.04
51 44 0.40
52 36 0.32
53 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (50 bp):
GCCTTCACATAGTACCACACTTGTACCAAAGCTATCTTTCTTCACAAGTT
Found at i:58707777 original size:15 final size:15
Alignment explanation
Indices: 58707754--58707783 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58707744 TCAAAAATTC
58707754 TAATACAAAACATAT
1 TAATACAAAACATAT
*
58707769 TAATTCAAAACATAT
1 TAATACAAAACATAT
58707784 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:58731087 original size:25 final size:25
Alignment explanation
Indices: 58731050--58731108 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
58731040 CAACTTCATG
*
58731050 AATCCTTTTTCATCACATATCAAGC
1 AATCCTTTCTCATCACATATCAAGC
58731075 AATCCTTTCTCATCACATATCAAGC
1 AATCCTTTCTCATCACATATCAAGC
58731100 AATCCTTTC
1 AATCCTTTC
58731109 ACCCTATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.31, C:0.31, G:0.03, T:0.36
Consensus pattern (25 bp):
AATCCTTTCTCATCACATATCAAGC
Found at i:58733827 original size:42 final size:42
Alignment explanation
Indices: 58733768--58733850 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
58733758 CAGATTAAAC
*
58733768 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGCATTTTAACA
1 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAACA
58733810 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAAC
1 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAAC
58733851 TACATTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (42 bp):
TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAACA
Found at i:58736766 original size:43 final size:42
Alignment explanation
Indices: 58736678--58736841 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 42
58736668 AATGTGATAT
* * *
58736678 TCGGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAAT-A-A-TA
58736721 TCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAGATAATA
1 TCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGA-ATAATA
* *
58736764 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAGTGATA
1 TCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAA-TAATA
** * *
58736807 TCGGGCTTCAAGCCTAGCAGGC-AAAATGCCGGTGA
1 TCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGA
58736842 TTTGATAAAA
Statistics
Matches: 109, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
42 13 0.12
43 69 0.63
44 17 0.16
45 8 0.07
46 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (42 bp):
TCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAATAATA
Found at i:58737686 original size:163 final size:163
Alignment explanation
Indices: 58737416--58737740 Score: 605
Period size: 163 Copynumber: 2.0 Consensus size: 163
58737406 GCAGTAACGT
58737416 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
1 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
*
58737481 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTTCAAGCAAAAGAATTGCTAATAATGAGATA
66 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGCAAGCAAAAGAATTGCTAATAATGAGATA
58737546 TTTGAAGTGGCGGGGGACAAAGTCAAATGACTA
131 TTTGAAGTGGCGGGGGACAAAGTCAAATGACTA
*
58737579 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGATGCTGAATAAATAATATAATTAAA
1 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
*
58737644 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGCAAGCAAAAGAATTGCTGATAATGAGATA
66 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGCAAGCAAAAGAATTGCTAATAATGAGATA
* *
58737709 TTTGAAGTGGCGGGGGATAGAGTCAAATGACT
131 TTTGAAGTGGCGGGGGACAAAGTCAAATGACT
58737741 TCGGGGTCCC
Statistics
Matches: 157, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
163 157 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (163 bp):
GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGCAAGCAAAAGAATTGCTAATAATGAGATA
TTTGAAGTGGCGGGGGACAAAGTCAAATGACTA
Found at i:58746111 original size:13 final size:13
Alignment explanation
Indices: 58746093--58746117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58746083 GTGTGGGTGC
58746093 GCACGGCCGTGTT
1 GCACGGCCGTGTT
58746106 GCACGGCCGTGT
1 GCACGGCCGTGT
58746118 CTGTCTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.40, T:0.20
Consensus pattern (13 bp):
GCACGGCCGTGTT
Found at i:58767154 original size:48 final size:48
Alignment explanation
Indices: 58766960--58767153 Score: 239
Period size: 48 Copynumber: 4.0 Consensus size: 48
58766950 TACATGAATC
** * *
58766960 CACATATCATCGTCGATTCCATGTCCCAGACATGGTCTTAGACTA-GCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCA
* * * * *
58767008 CACATATCATCGCCGATTCCATGTCCCAGGCATGGTCTTACGCTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
58767056 CACATATCAAT-ACCGATGCCATGTCCCAGATATGGTCTTACACAGTCA
1 CACATATC-ATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
58767104 CATATATCATCACCAATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
58767152 CA
1 CA
58767154 TTTAGCATGG
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.02
48 123 0.97
49 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (48 bp):
CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
Found at i:58780111 original size:50 final size:50
Alignment explanation
Indices: 58779992--58780276 Score: 277
Period size: 50 Copynumber: 5.6 Consensus size: 50
58779982 GTTGTGAGAA
* * * * *
58779992 CACATGTGTAGTACTATGTACAGGCTACTATGTGT-TTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-AGAT--TGTTAGGT
*
58780044 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGT
* * * ** ** * * *
58780094 CGCATGTGTAGTACTAAGTGTAGGCTACTGTGCATACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTG-TTAGGT
* * *
58780145 CACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTATCTA-ATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CTAGATTGTTAGGT
* ** * *
58780195 CACATGTGTAGTACTAAGTGCAGGCTACGACATATACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGT
* *
58780245 CGCATGTGTAGTACTAAGTGCAAGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
58780277 CGCACCATAG
Statistics
Matches: 187, Mismatches: 42, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.01
50 112 0.60
51 36 0.19
52 36 0.19
53 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGT
Found at i:58780125 original size:24 final size:24
Alignment explanation
Indices: 58780048--58780125 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
58780038 TTAGGTCACG
*
58780048 TGTGTAGTACTAAGTGCAGGCTAC
1 TGTGTAGTACTAAGTGTAGGCTAC
* * *
58780072 TATGT-GTACTAGATTGTTAGG-TCGC
1 TGTGTAGTACTA-AGTG-TAGGCT-AC
58780097 ATGTGTAGTACTAAGTGTAGGCTAC
1 -TGTGTAGTACTAAGTGTAGGCTAC
58780122 TGTG
1 TGTG
58780126 CATACCCGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
23 6 0.15
24 12 0.29
25 9 0.22
26 8 0.20
27 6 0.15
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (24 bp):
TGTGTAGTACTAAGTGTAGGCTAC
Found at i:58780232 original size:101 final size:100
Alignment explanation
Indices: 58780038--58780276 Score: 304
Period size: 101 Copynumber: 2.4 Consensus size: 100
58780028 TAAAATGGTT
* * *
58780038 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATGGTTAGGTCACATGTGT
* * *
58780103 AGTACTAAGTGTAGGCTACTGTGCATACCCGATAG
66 AGTACTAAGTGCAGGCTACTGTACATACCAGATAG
* *
58780138 CTTCGATCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTATCTA-ATGGTTAGGTCACATGT
1 -TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CTAGATGGTTAGGTCACATGT
*
58780202 GTAGTACTAAGTGCAGGCTAC-G-ACATATACCAGATTG
64 GTAGTACTAAGTGCAGGCTACTGTAC--ATACCAGATAG
* * * *
58780239 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATG
58780277 CGCACCATAG
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
99 1 0.01
100 33 0.28
101 83 0.69
102 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATGGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTGTACATACCAGATAG
Found at i:58780291 original size:151 final size:152
Alignment explanation
Indices: 58780000--58780292 Score: 399
Period size: 151 Copynumber: 1.9 Consensus size: 152
58779990 AACACATGTG
* * *
58780000 TAGTACTATGTACAGGCTACTATGTGTTTAAAATGGTTTTAGGTCACGTGTGTAGTACTAAGTGC
1 TAGTACTAAGTACAGGCTACTATGTGTATAAAATGG-TTTAGGTCACATGTGTAGTACTAAGTGC
* ** * * * * * *
58780065 AGGCTACTATGTGTACTAGATTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTGTGCATA
65 AGGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCACA
* *
58780130 CCCGATAGCTTCGATCACGTGTC
130 CCAGAGAGCTTCGATCACGTGTC
* **
58780153 TAGTACTAAGTGCAGGCTACTATGTGTATCTAATGG-TTAGGTCACATGTGTAGTACTAAGTGCA
1 TAGTACTAAGTACAGGCTACTATGTGTATAAAATGGTTTAGGTCACATGTGTAGTACTAAGTGCA
*
58780217 GGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGCAC
66 GGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCACAC
*
58780282 CATAGAGCTTC
131 CAGAGAGCTTC
58780293 AATTATAATG
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
151 90 0.74
153 31 0.26
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (152 bp):
TAGTACTAAGTACAGGCTACTATGTGTATAAAATGGTTTAGGTCACATGTGTAGTACTAAGTGCA
GGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCACAC
CAGAGAGCTTCGATCACGTGTC
Found at i:58780320 original size:151 final size:152
Alignment explanation
Indices: 58779995--58780320 Score: 368
Period size: 151 Copynumber: 2.1 Consensus size: 152
58779985 GTGAGAACAC
* * * *
58779995 ATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAAATGGTTTTAGGTCACGTGTGTAGTACTA
1 ATGTCTAGTAATATGTACAGGCTACTATGTGTATAAAATGG-TTTAGGTCACATGTGTAGTACTA
* ** * * * * *
58780060 AGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTGT
65 AGTGCAGGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTAT
* * * * *
58780125 GCATACCCGATAGCTTCGATCAC
130 GCACACCAGAGAGCTTCAATCAA
* * * * **
58780148 GTGTCTAGTACTAAGTGCAGGCTACTATGTGTATCTAATGG-TTAGGTCACATGTGTAGTACTAA
1 ATGTCTAGTAATATGTACAGGCTACTATGTGTATAAAATGGTTTAGGTCACATGTGTAGTACTAA
58780212 GTGCAGGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
66 GTGCAGGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
* * *
58780277 CGCACCATAGAGCTTCAATTATA
131 CACACCAGAGAGCTTCAATCA-A
* *
58780300 ATG-GTGGTAATATGTACAGGC
1 ATGTCTAGTAATATGTACAGGC
58780321 CATCGGGTAT
Statistics
Matches: 142, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
151 106 0.75
152 2 0.01
153 34 0.24
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (152 bp):
ATGTCTAGTAATATGTACAGGCTACTATGTGTATAAAATGGTTTAGGTCACATGTGTAGTACTAA
GTGCAGGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATG
CACACCAGAGAGCTTCAATCAA
Found at i:58786144 original size:28 final size:27
Alignment explanation
Indices: 58786077--58786144 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 27
58786067 TATGACAACA
*
58786077 TATAGTCCACTAGGACACTAAACATGG
1 TATAGTCCACTAGGACACTAAACAAGG
* ** *
58786104 TGTAGTCTGCTAGGACATTTAAACACAGG
1 TATAGTCCACTAGGACA-CTAAACA-AGG
58786133 -ATAGTCCACTAG
1 TATAGTCCACTAG
58786145 AACAATAATT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
27 14 0.45
28 15 0.48
29 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
TATAGTCCACTAGGACACTAAACAAGG
Found at i:58788041 original size:46 final size:47
Alignment explanation
Indices: 58787983--58788103 Score: 199
Period size: 46 Copynumber: 2.6 Consensus size: 47
58787973 GCATTGGCAT
58787983 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
58788030 T-AGACAAGGATACCATGTAAGACCATATTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
58788076 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
58788104 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
46 44 0.65
47 24 0.35
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:58788210 original size:55 final size:54
Alignment explanation
Indices: 58788082--58788278 Score: 263
Period size: 55 Copynumber: 3.6 Consensus size: 54
58788072 TTGGTAAGAT
* * * *
58788082 AAGGATATCATGTAAGACCATGCCAAGGCATGGCACTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
58788136 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* *
58788191 AAAGG-TACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
58788244 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
58788279 ATGGTAAGTT
Statistics
Matches: 127, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
52 4 0.03
53 34 0.27
54 41 0.32
55 44 0.35
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:58792092 original size:47 final size:47
Alignment explanation
Indices: 58792014--58793123 Score: 1779
Period size: 47 Copynumber: 23.3 Consensus size: 47
58792004 CCCTTCGGGA
* * * * * *
58792014 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792061 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58792108 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58792155 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58792202 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58792249 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58792298 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792345 CTTATCATATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATC--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58792394 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792441 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58792490 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58792537 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
58792586 CTTATCACATATATATACTTTCACATTCATCACATCGACTATCAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58792633 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792680 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58792729 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58792776 CTTATTACATATATATGCACTTTCACATTCATCACATCTGCTATTAGGC
1 CTTATCACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGC
58792825 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792872 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
58792921 CTTATCACATAAATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58792968 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58793017 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58793064 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58793111 CTTATCACATATA
1 CTTATCACATATA
58793124 CTATCATGTA
Statistics
Matches: 987, Mismatches: 60, Indels: 32
0.91 0.06 0.03
Matches are distributed among these distances:
47 631 0.64
49 356 0.36
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58792291 original size:96 final size:96
Alignment explanation
Indices: 58792014--58793123 Score: 1771
Period size: 96 Copynumber: 11.6 Consensus size: 96
58792004 CCCTTCGGGA
* * * * * * * *
58792014 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
58792077 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
58792108 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
58792171 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792202 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTACCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
58792267 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
58792298 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
58792363 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
58792394 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
58792459 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
58792490 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
58792555 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
58792586 CTTATCACATATATATACTTTCACATTCATCACATCGACTATCAGGCCTTATCACAT-T-TATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
58792649 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792680 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
58792743 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58792776 CTTATTACATATATATGCACTTTCACATTCATCACATCTGCTATTAGGCCTTATCAC--ATATAT
1 CTTATCACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
58792839 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58792872 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA-A-AT
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
58792935 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
58792968 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
58793031 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
58793064 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
58793124 CTATCATGTA
Statistics
Matches: 945, Mismatches: 53, Indels: 34
0.92 0.05 0.03
Matches are distributed among these distances:
94 236 0.25
95 3 0.00
96 697 0.74
97 1 0.00
98 8 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58794455 original size:85 final size:85
Alignment explanation
Indices: 58794357--58794535 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
58794347 TATTTTATTG
*
58794357 CCCATGCCCTTTATTTTATTAATCCTTACACAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACACAATGCACTACCCCAACATGTTTATGACATGTTTT
58794422 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
58794442 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACACAATGCACTACCCCAACATGTTTATGACATGTTTT
58794507 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
58794527 CCCATGCTC
1 CCCATGCTC
58794536 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACACAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:58795897 original size:18 final size:18
Alignment explanation
Indices: 58795846--58795898 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
58795836 GGCTAAGGAC
58795846 TAAATAGGAAATCAAAATTAT
1 TAAATA-GAAAT--AAATTAT
*
58795867 TAAA-AGATGATAAATTAT
1 TAAATAGA-AATAAATTAT
58795885 TAAATAGAAATAAA
1 TAAATAGAAATAAA
58795899 AATCATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 16 0.57
19 5 0.18
20 3 0.11
21 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.28
Consensus pattern (18 bp):
TAAATAGAAATAAATTAT
Found at i:58798346 original size:42 final size:42
Alignment explanation
Indices: 58798289--58798439 Score: 185
Period size: 42 Copynumber: 3.6 Consensus size: 42
58798279 CTCACAGGCA
*
58798289 TGTGTCTCAGCCGTGTGCACCACACGGGCAGAGACACGGGTG
1 TGTGTCTCAGCCGTGTGTACCACACGGGCAGAGACACGGGTG
** * *
58798331 TGTGTCTCAGCCGTGTGTACCACACCAGTAGAGGCACGGGTG
1 TGTGTCTCAGCCGTGTGTACCACACGGGCAGAGACACGGGTG
** * *
58798373 TGTGTCTCAGTTGTGTGTACCACACGGGCAGAGACACAGGCG
1 TGTGTCTCAGCCGTGTGTACCACACGGGCAGAGACACGGGTG
* * * *
58798415 TGTATCTCAACTGTGTATACCACAC
1 TGTGTCTCAGCCGTGTGTACCACAC
58798440 AGTCTGGAAC
Statistics
Matches: 92, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 92 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (42 bp):
TGTGTCTCAGCCGTGTGTACCACACGGGCAGAGACACGGGTG
Found at i:58798460 original size:84 final size:84
Alignment explanation
Indices: 58798289--58798463 Score: 192
Period size: 84 Copynumber: 2.1 Consensus size: 84
58798279 CTCACAGGCA
* * * * *
58798289 TGTGTCTCAGCCGTGTGCACCACACGGGCAGAGACACGGGTGTGTGTCTCAGCCGTGTGTACCAC
1 TGTGTCTCAGCCGTGTGCACCACACGGGCAGAGACACAGGCGTGTATCTCAACCGTGTATACCAC
* ** *
58798354 ACCAGTAGAGGCACGGGTG
66 ACCAGTAGAGACACAAGCG
** * *
58798373 TGTGTCTCAGTTGTGTGTACCACACGGGCAGAGACACAGGCGTGTATCTCAACTGTGTATACCAC
1 TGTGTCTCAGCCGTGTGCACCACACGGGCAGAGACACAGGCGTGTATCTCAACCGTGTATACCAC
*
58798438 A-CAGTCTG-GAACACAAGCG
66 ACCAGT-AGAG-ACACAAGCG
58798457 TGTGTCT
1 TGTGTCT
58798464 TGGTCATGTG
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
83 5 0.07
84 70 0.93
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (84 bp):
TGTGTCTCAGCCGTGTGCACCACACGGGCAGAGACACAGGCGTGTATCTCAACCGTGTATACCAC
ACCAGTAGAGACACAAGCG
Found at i:58802281 original size:25 final size:26
Alignment explanation
Indices: 58802214--58802282 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 26
58802204 TAGCTGTAAG
*
58802214 CGGTAAGCTCAT-ACGAGCTGAATACT
1 CGGTAAGCTC-TCTCGAGCTGAATACT
* *
58802240 -GGTAAGGTCGCGT-GAGCTGAAT-CT
1 CGGTAAGCTCTC-TCGAGCTGAATACT
58802264 CGGTAAGCTCTCTCGAGCT
1 CGGTAAGCTCTCTCGAGCT
58802283 AAGAATTAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
24 3 0.09
25 31 0.91
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (26 bp):
CGGTAAGCTCTCTCGAGCTGAATACT
Found at i:58803555 original size:55 final size:54
Alignment explanation
Indices: 58803467--58803573 Score: 142
Period size: 55 Copynumber: 2.0 Consensus size: 54
58803457 CTACTTTTCC
* * *
58803467 TGTAACACCCTTAACCCGTATCTGTCGTAGGAACAGGGTTTCGAAGCATTACCGG
1 TGTAACACCCTTAACCCGTATCTGACGCAGGAACAGGG-TACGAAGCATTACCGG
* * * *
58803522 TGTAACACCCTTTACCCGTATTTGACGCCGGAACAGGGTACGAGGCATTACC
1 TGTAACACCCTTAACCCGTATCTGACGCAGGAACAGGGTACGAAGCATTACC
58803574 AGACTTAAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 12 0.27
55 33 0.73
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (54 bp):
TGTAACACCCTTAACCCGTATCTGACGCAGGAACAGGGTACGAAGCATTACCGG
Found at i:58805554 original size:27 final size:28
Alignment explanation
Indices: 58805524--58805580 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
58805514 ATTTTTGATG
58805524 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
58805551 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
58805580 A
1 A
58805581 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:58806110 original size:42 final size:43
Alignment explanation
Indices: 58805985--58806144 Score: 132
Period size: 43 Copynumber: 3.7 Consensus size: 43
58805975 GTTGGTATTG
* *
58805985 ATCTGAATTATCGTGTAAGACCGTGTCTGGGACACAGGCATC-A
1 ATCTG-ATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * *
58806028 ATTTGAAATTTACGTGTAAGACCAT-TCTGGGACATC-GGCATCGT
1 ATCTG--ATTTTCGTGTAAGACCATGTCTGGGACA-CAGGCATCGA
* * *
58806072 ATCTG-TTTTCGTATAAGACCCTGTCTGGGACAGAGGCATCG-
1 ATCTGATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * * *
58806113 ATACTGAATTACATGTAAGACCACGTCTGGGA
1 AT-CTGATTTTCGTGTAAGACCATGTCTGGGA
58806145 TGTTGGCATT
Statistics
Matches: 94, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 16 0.17
42 19 0.20
43 38 0.40
44 21 0.22
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
ATCTGATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
Done.