Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 181 of 332
Found at i:60093900 original size:47 final size:47
Alignment explanation
Indices: 60093822--60094140 Score: 505
Period size: 47 Copynumber: 6.7 Consensus size: 47
60093812 CCCTTCGGGA
* * * * * *
60093822 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60093869 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60093916 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60093963 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60094012 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60094059 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
60094106 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
60094141 AGAATCCTAA
Statistics
Matches: 256, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 208 0.81
49 47 0.18
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60094091 original size:143 final size:143
Alignment explanation
Indices: 60093822--60094140 Score: 513
Period size: 143 Copynumber: 2.3 Consensus size: 143
60093812 CCCTTCGGGA
* * * *
60093822 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
60093885 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
60093950 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* * *
60093963 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
60094028 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
60094093 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
60094106 CTTATCTC--ATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATATACACT-TTCACATCCATCACAT
60094141 AGAATCCTAA
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
140 1 0.01
141 33 0.20
142 1 0.01
143 130 0.79
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:60100178 original size:15 final size:15
Alignment explanation
Indices: 60100155--60100189 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
60100145 CTACAGTAGT
60100155 GTTTCAGATTCTGAG
1 GTTTCAGATTCTGAG
* *
60100170 GTTTGAGATTCTGGG
1 GTTTCAGATTCTGAG
60100185 GTTTC
1 GTTTC
60100190 TTCCATTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.14, C:0.11, G:0.31, T:0.43
Consensus pattern (15 bp):
GTTTCAGATTCTGAG
Found at i:60106089 original size:46 final size:43
Alignment explanation
Indices: 60106035--60106207 Score: 150
Period size: 46 Copynumber: 3.8 Consensus size: 43
60106025 ATTGGGCATC
60106035 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATG-GAA-GT
*** *
60106080 CTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-T
1 C-GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-AA-T-GGAAGT
* * * *
60106127 CCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTTGAACGCC
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTAT-GAATGGAA-G-T
* *
60106174 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
60106208 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 60 0.58
47 32 0.31
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (43 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGGAAGT
Found at i:60106188 original size:93 final size:93
Alignment explanation
Indices: 60106029--60106200 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
60106019 AGGATAATTG
* * *
60106029 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
60106094 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* ** *
60106122 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTTGAACGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGA
*
60106186 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
60106201 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:60120685 original size:29 final size:30
Alignment explanation
Indices: 60120643--60120716 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
60120633 GAATATAATG
*
60120643 TGATTTGGGCCTAATA-AGCCACGTAAATA
1 TGATTTGGGCCTAATAGAGCCACATAAATA
* * *
60120672 TGATTTGGGCCTAA-AGGGGCCATATAAATG
1 TGATTTGGGCCTAATA-GAGCCACATAAATA
60120702 TGATTTGGGCCTAAT
1 TGATTTGGGCCTAAT
60120717 GGGCCATGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 14 0.37
30 23 0.61
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (30 bp):
TGATTTGGGCCTAATAGAGCCACATAAATA
Found at i:60120706 original size:30 final size:29
Alignment explanation
Indices: 60120635--60120723 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
60120625 GTGAGCATGA
*
60120635 ATAT-AATGTGATTTGGGCCTAATA-AGCC
1 ATATAAATGTGATTTGGGCCTAA-AGGGCC
** *
60120663 ACGTAAATATGATTTGGGCCTAAAGGGGCC
1 ATATAAATGTGATTTGGGCCTAAA-GGGCC
*
60120693 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
60120722 AT
1 AT
60120724 GTGAATATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
28 3 0.06
29 24 0.48
30 23 0.46
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGGCC
Found at i:60120756 original size:59 final size:58
Alignment explanation
Indices: 60120635--60120754 Score: 147
Period size: 59 Copynumber: 2.1 Consensus size: 58
60120625 GTGAGCATGA
*
60120635 ATAT-AATGTGATTTGGGCCTAATAAGCCACGTAAATATGATTTGGGCCTAAAGGGGCC
1 ATATAAATGTGATTTGGGCCTAATAAGCCACGTAAATATGAATTGGGCCT-AAGGGGCC
** * * *
60120693 ATATAAATGTGATTTGGGCCTAATGGGCCATGTGAATAT-AATTGGGTCT-AGTGGGCC
1 ATATAAATGTGATTTGGGCCTAATAAGCCACGTAAATATGAATTGGGCCTAAG-GGGCC
60120750 ATATA
1 ATATA
60120755 TATAGGTATG
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
56 2 0.04
57 10 0.19
58 12 0.22
59 30 0.56
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (58 bp):
ATATAAATGTGATTTGGGCCTAATAAGCCACGTAAATATGAATTGGGCCTAAGGGGCC
Found at i:60131301 original size:30 final size:30
Alignment explanation
Indices: 60131265--60131326 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
60131255 AATCGGAAGT
60131265 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
60131295 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
60131325 TT
1 TT
60131327 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:60136329 original size:25 final size:26
Alignment explanation
Indices: 60136299--60136347 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
60136289 ATATATTTTT
* *
60136299 TAAAAA-TTTATAATTTTTTTAAAAA
1 TAAAAATTTTAAAATTTTTATAAAAA
60136324 TAAAAATTTTAAAATTTTTATAAA
1 TAAAAATTTTAAAATTTTTATAAA
60136348 TATTTTGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (26 bp):
TAAAAATTTTAAAATTTTTATAAAAA
Found at i:60136331 original size:18 final size:19
Alignment explanation
Indices: 60136294--60136333 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
60136284 TTTTTATATA
* *
60136294 TTTTTTAAAAATTTATAAT
1 TTTTTTAAAAATTAAAAAT
60136313 TTTTTTAAAAA-TAAAAAT
1 TTTTTTAAAAATTAAAAAT
60136331 TTT
1 TTT
60136334 AAAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTTTAAAAATTAAAAAT
Found at i:60136370 original size:19 final size:19
Alignment explanation
Indices: 60136339--60136398 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 19
60136329 ATTTTAAAAT
*
60136339 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
*
60136357 TTTTAAAAATTATTTTCAAA
1 TTTTAAAAATTATTTT-GAA
* *
60136377 ATTTAAAAATTACTTTG-A
1 TTTTAAAAATTATTTTGAA
60136395 TTTT
1 TTTT
60136399 TTGTTAAGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
18 12 0.35
19 6 0.18
20 16 0.47
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:60136771 original size:46 final size:46
Alignment explanation
Indices: 60136704--60136795 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
60136694 ACATGTTTTA
60136704 ATGATGACTAGAATATGTATAACTATAATTACCACAAGTGGAAGAT
1 ATGATGACTAGAATATGTATAACTATAATTACCACAAGTGGAAGAT
60136750 ATGATGACTAGAATATGTATAACTATAATTACCACAAGTGGAAGAT
1 ATGATGACTAGAATATGTATAACTATAATTACCACAAGTGGAAGAT
60136796 GTTTGCTTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGATGACTAGAATATGTATAACTATAATTACCACAAGTGGAAGAT
Found at i:60140807 original size:27 final size:27
Alignment explanation
Indices: 60140757--60140850 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 27
60140747 TAGTATACAG
* * * *
60140757 GTTGAGCCCATCTGATAAGCGCGACTA
1 GTTGAGCCTATCTCACAAGTGCGACTA
* *
60140784 GTTGAGCCTATTTCAGAAGTGCGACTA
1 GTTGAGCCTATCTCACAAGTGCGACTA
* * *
60140811 GTTGAGCCTATCTGACAGGTACGACTA
1 GTTGAGCCTATCTCACAAGTGCGACTA
*
60140838 GTTGTGCCTATCT
1 GTTGAGCCTATCT
60140851 TAGAGGCGCG
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (27 bp):
GTTGAGCCTATCTCACAAGTGCGACTA
Found at i:60140866 original size:27 final size:27
Alignment explanation
Indices: 60140757--60140875 Score: 96
Period size: 27 Copynumber: 4.4 Consensus size: 27
60140747 TAGTATACAG
* * * *
60140757 GTTGAGCCCATCTGATAAGCGCGACTA
1 GTTGAGCCTATCTTAGAGGCGCGACTA
* *
60140784 GTTGAGCCTAT-TTCAGAAGTGCGACTA
1 GTTGAGCCTATCTT-AGAGGCGCGACTA
* * **
60140811 GTTGAGCCTATCTGACAGGTACGACTA
1 GTTGAGCCTATCTTAGAGGCGCGACTA
* *
60140838 GTTGTGCCTATCTTAGAGGCGCGAATA
1 GTTGAGCCTATCTTAGAGGCGCGACTA
* *
60140865 GTGGGGCCTAT
1 GTTGAGCCTAT
60140876 AAGAAAGTCT
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 72 0.97
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (27 bp):
GTTGAGCCTATCTTAGAGGCGCGACTA
Found at i:60144346 original size:49 final size:49
Alignment explanation
Indices: 60144185--60144361 Score: 153
Period size: 49 Copynumber: 3.6 Consensus size: 49
60144175 TGGGATAAGA
* * * **
60144185 TGTTGACGCCATGTCCCAGACATGGTCTTACATTGGCTAGCA-C-ATCAA
1 TGTTGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCGG
* * * * * *
60144233 AGTTGAAGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
1 TGTTGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCG-G
** * *
60144283 -GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGG
1 TGTTGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
* **
60144331 TGTTGATGTCATGTCCCAGGTAGGTCTTACA
1 TGTTGATGCCATGTCCCAGACAGGTCTTACA
60144362 TTGACACACA
Statistics
Matches: 101, Mismatches: 24, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 15 0.15
48 21 0.21
49 65 0.64
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (49 bp):
TGTTGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
Found at i:60147159 original size:42 final size:42
Alignment explanation
Indices: 60147107--60147222 Score: 128
Period size: 42 Copynumber: 2.8 Consensus size: 42
60147097 TTGTTTCAAT
* *
60147107 GCCATATCCCCGATATGGTCTTACATGAAAT-ATCATATCG-G
1 GCCATATCCCCGATATGGTCTTACACGAAATCA-CATACCGAG
* * *
60147148 CGCCATGTCCCCGACATGGTCTTATACGAAATCACATACCGAG
1 -GCCATATCCCCGATATGGTCTTACACGAAATCACATACCGAG
* * *
60147191 GCCATATCCCAGATATGGTCTTATACGGAATC
1 GCCATATCCCCGATATGGTCTTACACGAAATC
60147223 TTAATAACCT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 61 0.97
43 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (42 bp):
GCCATATCCCCGATATGGTCTTACACGAAATCACATACCGAG
Found at i:60151482 original size:49 final size:48
Alignment explanation
Indices: 60151397--60151747 Score: 228
Period size: 49 Copynumber: 7.5 Consensus size: 48
60151387 GTCGATGTCG
** * * *
60151397 TGTCCCAGACAGGTCTTATTCTAACTTTCATATATCGAGGATGATGCCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTGATG-CA
* * *
60151446 TGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTG-TCAATGCCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAG-GCT-GATG-CA
* * * * *
60151495 TGTCCC-GAATAGGTCTTACACT-G-ACACACA-A-C-AAGCTGATGCCA
1 TGTCCCAG-ACAGGTCTTACACTAGCTCTCATATATCGAGGCTGATG-CA
*
60151539 TGTCCCAGACAGGTCTTACACTAGCT-T-ATATATCGCGAGGCCGATGCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATATAT--CGAGGCTGATGCA
* * * * * * *
60151587 TGTCCCAGATATGTCTTACACTAGCTCTC--GTCTCAATGCTAATGCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTGATGCA
* * * * * *
60151633 TGTCCCAAACATGTCTTACACTGGCT-TAAAATCTCGAGGCTGATGCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTGATGCA
* * * *
60151680 TGTCCCAAACATGTCTTACACTAGCTCTCATGT-T-GTGGCTGATGCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTGATGCA
* *
60151726 TATCCCAGACATGTCTTACACT
1 TGTCCCAGACAGGTCTTACACT
60151748 GGCACACATA
Statistics
Matches: 241, Mismatches: 43, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
44 28 0.12
45 6 0.02
46 64 0.27
47 42 0.17
48 36 0.15
49 65 0.27
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
TGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTGATGCA
Found at i:60151686 original size:47 final size:46
Alignment explanation
Indices: 60151529--60151747 Score: 224
Period size: 46 Copynumber: 4.7 Consensus size: 46
60151519 CACACAACAA
* * * *
60151529 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTATATATCGCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCGAG
* * * * *
60151578 GCCGATGCATGTCCCAGATATGTCTTACACTAGCTCTCGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * *
60151624 GCTAATGCATGTCCCAAACATGTCTTACACTGGCT-TAAAATCTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCT--CATCTCGAG
* * * *
60151671 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATGTTGTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
*
60151717 GCTGATGCATATCCCAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
60151748 GGCACACATA
Statistics
Matches: 141, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 68 0.48
47 40 0.28
48 26 0.18
49 6 0.04
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:60151694 original size:93 final size:94
Alignment explanation
Indices: 60151537--60151750 Score: 279
Period size: 93 Copynumber: 2.3 Consensus size: 94
60151527 AAGCTGATGC
* * * * *
60151537 CATGTCCCAGACAGGTCTTACACTAGCTTATATATCGCGAGGCCGATGCATGTCCCAGATATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTATAAATCGCGAGGCCGATGCATGTCCCAAACATGTC
*
60151602 TTACACTAGCTCTCGTCTCAAT-GCTAATG
66 TTACACTAGCTCTCATCT-AATGGCTAATG
* * *
60151631 CATGTCCCAAACATGTCTTACACTGGCTTA-AAATCTCGAGGCTGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTATAAATCGCGAGGCCGATGCATGTCCCAAACATGTC
* ** *
60151695 TTACACTAGCTCTCATGTTGTGGCTGATG
66 TTACACTAGCTCTCATCTAATGGCTAATG
*
60151724 CATATCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
60151751 ACACATATCA
Statistics
Matches: 104, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
92 1 0.01
93 76 0.73
94 27 0.26
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTGGCTTATAAATCGCGAGGCCGATGCATGTCCCAAACATGTC
TTACACTAGCTCTCATCTAATGGCTAATG
Found at i:60154164 original size:46 final size:46
Alignment explanation
Indices: 60154114--60154261 Score: 142
Period size: 46 Copynumber: 3.2 Consensus size: 46
60154104 GGATAAGATG
*
60154114 GGACATGCATCGGCCTCGAGATGTAAGCCAGTGTGAGA-CATGTCT
1 GGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTCT
* *
60154159 AGGACATGCATCGG-CTACGAGATGT--GTCAGTGAAAGACCATGTCT
1 -GGACATGCATCGGCCT-CGAGATGTAAGCCAGTGTAAGACCATGTCT
* * * *
60154204 GAGACATGGCATCGGCATGGATATGTGAGAGCTAGTGTAAGACCATGTCT
1 G-GACAT-GCATCGGCCTCGAGATGT-A-AGCCAGTGTAAGACCATGTCT
60154254 GGGACATG
1 -GGACATG
60154262 GCATTGACTT
Statistics
Matches: 83, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
44 10 0.12
45 14 0.17
46 34 0.41
47 1 0.01
49 1 0.01
50 22 0.27
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (46 bp):
GGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTCT
Found at i:60166280 original size:43 final size:43
Alignment explanation
Indices: 60166219--60166480 Score: 411
Period size: 43 Copynumber: 6.1 Consensus size: 43
60166209 CCGGCATTGC
*
60166219 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * *
60166262 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
*
60166305 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
*
60166348 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
*
60166391 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * * *
60166434 TCCTGCTAGGCACGAAGGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
60166475 GCCTGC
1 GCCTGC
60166481 GGGATTTATC
Statistics
Matches: 201, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 13 0.06
42 2 0.01
43 186 0.93
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
Found at i:60166506 original size:38 final size:38
Alignment explanation
Indices: 60166452--60166575 Score: 149
Period size: 38 Copynumber: 3.2 Consensus size: 38
60166442 GGCACGAAGG
* * * *
60166452 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
60166490 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** **
60166528 CCCAGATATTTTACCAGCACGAAGCCTGCAGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA
60166567 GCCCGGATA
1 -CCCGGATA
60166576 CACATCAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 60 0.81
39 7 0.09
40 7 0.09
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:60170624 original size:16 final size:16
Alignment explanation
Indices: 60170603--60170635 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
60170593 AAACAGATGG
60170603 TGCGATTGCAAGAGGT
1 TGCGATTGCAAGAGGT
60170619 TGCGATTGCAAGAGGT
1 TGCGATTGCAAGAGGT
60170635 T
1 T
60170636 TCAAACACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.27
Consensus pattern (16 bp):
TGCGATTGCAAGAGGT
Found at i:60171412 original size:33 final size:33
Alignment explanation
Indices: 60171370--60171468 Score: 108
Period size: 33 Copynumber: 3.0 Consensus size: 33
60171360 GAACTTGAGT
60171370 CGGGAGGAGTGGAGTACGACAGTGGATACGGGC
1 CGGGAGGAGTGGAGTACGACAGTGGATACGGGC
* ** ***
60171403 CGGGAGGAGTGGAGTTCGTTAGTGGATACAAAC
1 CGGGAGGAGTGGAGTACGACAGTGGATACGGGC
* * * *
60171436 CAGGAAGAGTGGAGTACAACGGTGGATACGGGC
1 CGGGAGGAGTGGAGTACGACAGTGGATACGGGC
60171469 TAGAGGGAGC
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.27, C:0.14, G:0.43, T:0.15
Consensus pattern (33 bp):
CGGGAGGAGTGGAGTACGACAGTGGATACGGGC
Found at i:60171483 original size:66 final size:66
Alignment explanation
Indices: 60171376--60171526 Score: 155
Period size: 66 Copynumber: 2.3 Consensus size: 66
60171366 GAGTCGGGAG
* * * * * * *
60171376 GAGTGGAGTACGACAGTGGATACGGGCCGGGAGGAGTGGAGTTCGTTA-GTGGATACAAACCAGG
1 GAGTGGAGTACAACGGTGGATACGGGCAGAGAGGAGCGGAGTAC-TGAGGTGGATACAAACCAGG
60171440 AA
65 AA
* *
60171442 GAGTGGAGTACAACGGTGGATACGGGCTAGAG-GGAGCGGAGTACTGAGGTGGATACAAGCTAGG
1 GAGTGGAGTACAACGGTGGATACGGGC-AGAGAGGAGCGGAGTACTGAGGTGGATACAAACCAGG
*
60171506 AT
65 AA
*
60171508 GATTGGAGTACTAA-GGTGG
1 GAGTGGAGTAC-AACGGTGG
60171527 TAGTGGGCTG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
65 2 0.03
66 65 0.92
67 4 0.06
ACGTcount: A:0.28, C:0.12, G:0.42, T:0.18
Consensus pattern (66 bp):
GAGTGGAGTACAACGGTGGATACGGGCAGAGAGGAGCGGAGTACTGAGGTGGATACAAACCAGGA
A
Found at i:60183864 original size:14 final size:16
Alignment explanation
Indices: 60183830--60183863 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
60183820 AAAATCAAAT
60183830 AAAATTACATTATAAA
1 AAAATTACATTATAAA
60183846 AAAATTACATTA-AAA
1 AAAATTACATTATAAA
60183861 AAA
1 AAA
60183864 TCATAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTACATTATAAA
Found at i:60184343 original size:60 final size:60
Alignment explanation
Indices: 60184277--60184395 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
60184267 ATATTAAACT
* * * *
60184277 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
60184337 AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
60184396 TAAAAAACAA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.33
Consensus pattern (60 bp):
AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:60184417 original size:60 final size:60
Alignment explanation
Indices: 60184291--60184417 Score: 175
Period size: 60 Copynumber: 2.1 Consensus size: 60
60184281 ACAACAATTT
* * * * **
60184291 ATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTACAAACACAAAAATTT
1 ATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAAAAAAACAAAAATAA
*
60184351 AGAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAAAAAACAAAAA-AA
1 ATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA-AAAAAACAAAAATAA
60184411 ATAACAT
1 ATAACAT
60184418 TTATACAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 48 0.83
61 10 0.17
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (60 bp):
ATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAAAAAAACAAAAATAA
Found at i:60184617 original size:13 final size:13
Alignment explanation
Indices: 60184599--60184626 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60184589 CTTTTGTTCT
60184599 TTTCCTTTCTCTC
1 TTTCCTTTCTCTC
60184612 TTTCCTTTCTCTC
1 TTTCCTTTCTCTC
60184625 TT
1 TT
60184627 CTGGTGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTCCTTTCTCTC
Found at i:60185612 original size:30 final size:30
Alignment explanation
Indices: 60185566--60185627 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
60185556 ATCTATTTTA
*
60185566 TTGTCAATTTTTTTATTATTTTAAAGGCAT
1 TTGTCAATTTTGTTATTATTTTAAAGGCAT
* *
60185596 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTCAATTTTGTTATTATTTTAAAGGCAT
60185626 TT
1 TT
60185628 TCTTATTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.05, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTCAATTTTGTTATTATTTTAAAGGCAT
Found at i:60188562 original size:595 final size:601
Alignment explanation
Indices: 60186766--60188937 Score: 2624
Period size: 600 Copynumber: 3.6 Consensus size: 601
60186756 GTATTGTCAG
* * *
60186766 TCAACATTGTTCATACTAGGATGGTTAAGATTGTACATAAACAAGAAAAAAAAACTAGTGCATCA
1 TCAACATTTTTCATACTAGGATGGTTAAGATTGTACATAAACAAGAAGAAAAAACTAATGCATCA
* *
60186831 CAGAGGCACTGAAATAAGGAATGAAAAATTTCCCCAATTTTTAGGTTCTTATTCATTTATAGATA
66 GAGAGGCACTGAAATAAGCAATGAAAAATTT-CCCAATTTTTAGGTTCTTATTCATTTATAGATA
** * *
60186896 AACGAATGAGGTGACTAAAATGATAATTATTTAGTTGTATGTATAATAATGACATGAAAATTACA
130 AAATAATGAAGTGACT-AAATGATAA-TA--TA--T-TATGTATAATAATGACATGGAAATTACA
* ** *
60186961 TTACTAGGTGGAAAATCAAAATTTACAAGAAATTCCAAGTGAATTTTCCGTTCCCCATTTCAACA
188 TTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCAACA
* * * *
60187026 GGAGTGACTAAAGTGAACATACTGTAACATCGATTCCTATTTTACAACTTGTTT-TTTCTAGATA
253 GGAGTGACCAAAATGAAAATACTGTAACATCGA-TGCTATTTTACAACTT-TTTCTTTCTAGATA
* *
60187090 TC-----T--AAA---AT-GAA----GGTGACCAACAGTGTAGTTTACCTTTATTTCTTTTCTAA
316 TCTAAAATAAAAATTTATAAAAGTTGGGTGACCAACTGTGTAGTTTACCTTTATTTCTTTTCTAA
* * * *
60187140 TTAAATTAAACTAATTTTGAAAAAAATCATATAGGTAAAGAGTTTTCAAAACACATTTGAATGAG
381 TTAAATTAAACTAATTTTGAAAAAAATCAAATAGTTAAAGAGTTTTC-AAACACAATTGAACGAG
** * *
60187205 TTTGTAGGGTAGCCGAAGGATTACCAATATAATTATAATGAAATATATACATTTTTGACTAAAAT
445 TTTGTAGGGTAGCCGAAGGATTAATAATATAATTATAATGACATATAT--ATTTTTTACTAAAAT
* * * * *
60187270 CTGGCTTTCATTTATGTGATCAGGAGGAACAAAACAGAATTTAAAGTAAAACTAAAAGCAAATAA
508 ATGGCTTTCATTGATGTG-TTAGGAGCAACAAAATAGAATTTAAAGTAAAACTAAAAGCAAATAA
60187335 AAGTGAAAACAACCATAGTATTTGTCGTCT
572 AAGTGAAAACAACCATAGTATTTGTCGTCT
* *
60187365 TCAACATTTTTCGTACTAGGATGGTTAAGATTGTACATAAACAAGAAGAAAAAACCTAATACATC
1 TCAACATTTTTCATACTAGGATGGTTAAGATTGTACATAAACAAGAAGAAAAAA-CTAATGCATC
* * *
60187430 AGAGAGGCACTGAAGTAAGCAATGAAACATTCCCCCAATTTTTAGGTTCTTATTCATTTATAGAT
65 AGAGAGGCACTGAAATAAGCAATGAAAAATT-TCCCAATTTTTAGGTTCTTATTCATTTATAGAT
* *
60187495 -AAATGAATGAAGTGACTAAAATGATCATTATTTAGTTGTGTGTATAATAATGACATGGAAATTA
129 AAAAT-AATGAAGTGACT-AAATGAT-A--ATATA--T-TATGTATAATAATGACATGGAAATTA
* * * * *
60187559 CATTACTAGGTGGAAAGTCAAAATTTACAATAAATTCCAAGTGTGTTTTTCGTTACCTATTTCAA
186 CATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCAA
* * * * *
60187624 CTGGAGTGACCAAAATGAAAATATTGTAACATCAATGCCTATTTTACAACTTTTTCCTTCTAGTT
251 CAGGAGTGACCAAAATGAAAATACTGTAACATCGATG-CTATTTTACAACTTTTTCTTTCTAGAT
*
60187689 ATCTAAAATAAAAATTTATAAAAGTTGGGTGACCAATTGTGTAGTTTACCTTTATTTCTTTTCTA
315 ATCTAAAATAAAAATTTATAAAAGTTGGGTGACCAACTGTGTAGTTTACCTTTATTTCTTTTCTA
* *
60187754 ATTAAAATTAAACTAATTTTGAAGAAAATCAAATAGTTTAAGAGTTTTCAAA-ACATATCTGAAC
380 ATT-AAATTAAACTAATTTTGAAAAAAATCAAATAGTTAAAGAGTTTTCAAACACA-AT-TGAAC
* *
60187818 GAGTTTGTAGGGTTG-CAACAGGATTAATAATATAATTATAATGACATATATATATTTTTGACTA
442 GAGTTTGTAGGGTAGCCGA-AGGATTAATAATATAATTATAATGACATATATAT-TTTTT-ACTA
* * *
60187882 AAATATGACTTT--TTGA----TTAGGAGCAACAAAATAGAATTTAAAGTAAAACTAAAAGCGAC
504 AAATATGGCTTTCATTGATGTGTTAGGAGCAACAAAATAGAATTTAAAGTAAAACTAAAAGCAAA
* * *
60187941 TAAAAGTGAAAACAACTATAGTATTTGTTGGCT
569 TAAAAGTGAAAACAACCATAGTATTTGTCGTCT
* * * * * *
60187974 TCAACATTATT-ATACTAGGATAGTTAAGATTGAACAAAAACAAGAAGAAAAAACTAGTGCATTA
1 TCAACATTTTTCATACTAGGATGGTTAAGATTGTACATAAACAAGAAGAAAAAACTAATGCATCA
* * *
60188038 GAGAGGTACTGAAATAAGCAATGAAGAATTTCCCAATTTTTAGGTTTTTATTCATTTATAGATAA
66 GAGAGGCACTGAAATAAGCAATGAAAAATTTCCCAATTTTTAGGTTCTTATTCATTTATAGATAA
*
60188103 AATAATGAAGTGACT-AAT-ATGATA-A-TATGTATAATAATGACATGGAAATTACATTACTAGG
131 AATAATGAAGTGACTAAATGATAATATATTATGTATAATAATGACATGGAAATTACATTACTAGG
* * * * **
60188164 TAGAAAGA-AAAAATTTACAACAAACTCCAATTGGGTTTT-CGTTATTCATTTCAAC-GGAAGTG
196 TGGAAA-ATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCAACAGG-AGTG
** * *
60188226 ATTAAAATGAAAATACTGTAACATCGATGCTAATTTTA-AGA-TTTTT-TTTCTAGATATTTGAA
259 ACCAAAATGAAAATACTGTAACATCGATGCT-ATTTTACA-ACTTTTTCTTTCTAGATATCTAAA
** *
60188288 ATAAAAATTTATAAAAGTTGAATGACCAACTGTGTAGTTTACCCTTATTTC-TTTCTAATTAAAT
322 ATAAAAATTTATAAAAGTTGGGTGACCAACTGTGTAGTTTACCTTTATTTCTTTTCTAATTAAAT
* * *
60188352 TAAACTATTTTTTAACAAAATCAAATAGTTAAAGAGTTTTCGAAACACAATTGAACGAGTTTGTA
387 TAAACTAATTTTGAAAAAAATCAAATAGTTAAAGAGTTTTC-AAACACAATTGAACGAGTTTGTA
*** *
60188417 GGGTAGCCGAAGGATTAATAATATAATTATAATGACATATATATTTTTTACTTTCATATGGTTTT
451 GGGTAGCCGAAGGATTAATAATATAATTATAATGACATATATATTTTTTACTAAAATATGGCTTT
* * * *
60188482 CATTGATGTGGTTAGGAGCTACAAAATAGAATTTAAATTAAAACCAAAAGCAAATGAAAGTGAAA
516 CATTGATGT-GTTAGGAGCAACAAAATAGAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAA
*
60188547 ACAACCATGGTATTTGTCGTCT
580 ACAACCATAGTATTTGTCGTCT
* *
60188569 TCAACATTGTTT-GTACTAGGATGGTTAAGATTGTACATAAACAAGAA-AAAAAAATAATGCATC
1 TCAACATT-TTTCATACTAGGATGGTTAAGATTGTACATAAACAAGAAGAAAAAACTAATGCATC
* *
60188632 AGAAAGGCACTGAAATAAGCAATGAAAAATTTCTCTAATTTTTAGGTTCTTATTCATTTATAGAT
65 AGAGAGGCACTGAAATAAGCAATGAAAAATTTC-CCAATTTTTAGGTTCTTATTCATTTATAGAT
*
60188697 AAAATATTGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATGGAAATTACA
129 AAAATAATGAAGTGACT-AAATGATAATA--TA--T-TATGTATAATAATGACATGGAAATTACA
* * * * *
60188762 TTACTAGATGGAAAATTAAAATTTACAACAAATTCCGAGTGGGTTTTCCATTACCCATTTCAACG
188 TTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCAACA
* * *
60188827 GGAGTGACCAAAATGAAAATATTGTAACATCGGTGTCAATTTTACAACCTTTTTCTTT-TAGATA
253 GGAGTGACCAAAATGAAAATACTGTAACATCGATG-CTATTTTACAA-CTTTTTCTTTCTAGATA
* * * * *
60188891 TCTAAAATGAAATTTTGTAAAACTTGGGTGACCAACTATGTAGTTTA
316 TCTAAAATAAAAATTTATAAAAGTTGGGTGACCAACTGTGTAGTTTA
60188938 GCCAAACGAT
Statistics
Matches: 1353, Mismatches: 156, Indels: 118
0.83 0.10 0.07
Matches are distributed among these distances:
588 11 0.01
589 5 0.00
590 98 0.07
591 16 0.01
592 62 0.05
593 10 0.01
594 49 0.04
595 183 0.14
596 78 0.06
598 3 0.00
599 63 0.05
600 229 0.17
601 1 0.00
602 2 0.00
603 3 0.00
604 3 0.00
605 2 0.00
606 110 0.08
607 90 0.07
608 42 0.03
609 127 0.09
610 5 0.00
611 2 0.00
614 8 0.01
615 49 0.04
616 102 0.08
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.34
Consensus pattern (601 bp):
TCAACATTTTTCATACTAGGATGGTTAAGATTGTACATAAACAAGAAGAAAAAACTAATGCATCA
GAGAGGCACTGAAATAAGCAATGAAAAATTTCCCAATTTTTAGGTTCTTATTCATTTATAGATAA
AATAATGAAGTGACTAAATGATAATATATTATGTATAATAATGACATGGAAATTACATTACTAGG
TGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCAACAGGAGTGAC
CAAAATGAAAATACTGTAACATCGATGCTATTTTACAACTTTTTCTTTCTAGATATCTAAAATAA
AAATTTATAAAAGTTGGGTGACCAACTGTGTAGTTTACCTTTATTTCTTTTCTAATTAAATTAAA
CTAATTTTGAAAAAAATCAAATAGTTAAAGAGTTTTCAAACACAATTGAACGAGTTTGTAGGGTA
GCCGAAGGATTAATAATATAATTATAATGACATATATATTTTTTACTAAAATATGGCTTTCATTG
ATGTGTTAGGAGCAACAAAATAGAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAACC
ATAGTATTTGTCGTCT
Found at i:60189103 original size:23 final size:23
Alignment explanation
Indices: 60189063--60189106 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
60189053 AAAAGTCACA
***
60189063 CCAACAACACATTGAAAGATAAT
1 CCAACAACACACCAAAAGATAAT
60189086 CCAACAACACACCAAAAGATA
1 CCAACAACACACCAAAAGATA
60189107 GAGCAAACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.55, C:0.27, G:0.07, T:0.11
Consensus pattern (23 bp):
CCAACAACACACCAAAAGATAAT
Found at i:60192369 original size:50 final size:49
Alignment explanation
Indices: 60192239--60192480 Score: 242
Period size: 50 Copynumber: 4.9 Consensus size: 49
60192229 AGCCGAAGCT
* * * * * *
60192239 ATCTGATACGCATAGTAGCTTGCACTTAGTACTACACATGCGA-TCAAC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC
* *
60192287 AATC-CAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTCATC
1 -ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTCATC
60192338 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTC--A-TC
* * * *
60192389 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACT-ATAC
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCAT-C
* *
60192438 AGTATGATACACGTAGTAGCCTACACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
60192481 TATTCAGAAT
Statistics
Matches: 164, Mismatches: 17, Indels: 23
0.80 0.08 0.11
Matches are distributed among these distances:
48 4 0.02
49 39 0.24
50 75 0.46
51 45 0.27
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC
Found at i:60192446 original size:101 final size:99
Alignment explanation
Indices: 60192242--60192480 Score: 286
Period size: 101 Copynumber: 2.4 Consensus size: 99
60192232 CGAAGCTATC
* * * * * *
60192242 TGATACGCATAGTAGCTTGCACTTAGTACTACACATGCGATCAACAATCCAGTACACGTAGTAGC
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAACAATCCAGTACACATAGTAGC
* * *
60192307 TTGCACTTAGTACTACACACGTGACCTCATCATC
66 CTGCACTTAGTACTACACACGCGACCTCATCATA
** *
60192341 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATTGAGTACGCATAGT
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AA--CAATCCAGTACACATAGT
*
60192405 AGCCTGCACTTAGTACTACACATGCGA-CT-ATACAGTA
63 AGCCTGCACTTAGTACTACACACGCGACCTCAT-CA-TA
*
60192442 TGATACACGTAGTAGCCTACACTTAGTACTACACACGTG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
60192481 TATTCAGAAT
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
99 39 0.32
100 6 0.05
101 75 0.62
102 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAACAATCCAGTACACATAGTAGC
CTGCACTTAGTACTACACACGCGACCTCATCATA
Found at i:60200019 original size:6 final size:6
Alignment explanation
Indices: 60199989--60200187 Score: 167
Period size: 6 Copynumber: 32.3 Consensus size: 6
60199979 AAGAAACATT
* * *
60199989 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
60200036 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
60200087 ATCAGT ATCAAGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
60200138 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
60200186 AT
1 AT
60200188 GTGAATGCAA
Statistics
Matches: 156, Mismatches: 20, Indels: 34
0.74 0.10 0.16
Matches are distributed among these distances:
5 10 0.06
6 125 0.80
7 14 0.09
8 7 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:60200019 original size:18 final size:18
Alignment explanation
Indices: 60199989--60200187 Score: 104
Period size: 19 Copynumber: 10.8 Consensus size: 18
60199979 AAGAAACATT
60199989 ATCAGAA-CTAGAATCAAA
1 ATCAGAATC-AGAATCAAA
* * *
60200007 ATGAGAATCAGAATTAGA
1 ATCAGAATCAGAATCAAA
* *
60200025 ATCAGAATCAG-GTGACAGA
1 ATCAGAATCAGAAT--CAAA
* *
60200044 ATCAAAATCAGAATCAGA
1 ATCAGAATCAGAATCAAA
* *
60200062 ATCAGAATTAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAAA
*
60200081 ATCAGAATCAGTATCAAGTA
1 ATCAGAATCAGAATCAA--A
*
60200101 A-CAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAAA
* * *
60200118 ACCAGAATCAGAATTAGGTA
1 ATCAGAATCAGAATCA--AA
**
60200138 A-CAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAAA
*
60200155 ATCAGGTAA-CAGAATCAGA
1 ATCA-G-AATCAGAATCAAA
60200174 ATCAGAATCAGAAT
1 ATCAGAATCAGAAT
60200188 GTGAATGCAA
Statistics
Matches: 144, Mismatches: 21, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
17 7 0.05
18 60 0.42
19 68 0.47
20 9 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:60200052 original size:25 final size:25
Alignment explanation
Indices: 60199989--60200184 Score: 160
Period size: 25 Copynumber: 7.9 Consensus size: 25
60199979 AAGAAACATT
* *
60199989 ATCAGAA-CTAGAATCAAAATGA-GA
1 ATCAGAATC-AGAATCAGAATCAGGA
* *
60200013 ATCAGAATTAGAATCAGAATCAGGTG
1 ATCAGAATCAGAATCAGAATCAGG-A
*
60200039 A-CAGAATCAAAATCAGAATCA-GA
1 ATCAGAATCAGAATCAGAATCAGGA
*
60200062 ATCAGAATTAGGTAA-CAGAATCA-GA
1 ATCAGAATCA-G-AATCAGAATCAGGA
*
60200087 ATCAGTATCAAGTAA-CAGAATCA-GA
1 ATCAGAATC-AG-AATCAGAATCAGGA
* *
60200112 ATCAGAACCAGAATCAGAATTAGGTA
1 ATCAGAATCAGAATCAGAATCAGG-A
*
60200138 A-CAGAATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCAGAATCAGG-A
60200163 A-CAGAATCAGAATCAGAATCAG
1 ATCAGAATCAGAATCAGAATCAG
60200185 AATGTGAATG
Statistics
Matches: 144, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
23 3 0.02
24 35 0.24
25 100 0.69
26 6 0.04
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
ATCAGAATCAGAATCAGAATCAGGA
Found at i:60200055 original size:37 final size:37
Alignment explanation
Indices: 60200012--60200187 Score: 137
Period size: 37 Copynumber: 4.6 Consensus size: 37
60200002 TCAAAATGAG
* *
60200012 AATCAGAATTAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* *
60200049 AATCAGAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
*
60200086 AATCAGTATCAAGTAACAGAATCAGAATCA-G-AACCAGAATCAG
1 AATCAG----AA-T--CAGAATCAGAATCAGGTAA-CAGAATCAA
* * *
60200129 AATTAGGTAA-CAGAATCAGAATCA-GTATCAGGTAA-CAG
1 AATCA-G-AATCAGAATCAGAATCAGGTAACA-G-AATCAA
60200167 AATCAGAATCAGAATCAGAAT
1 AATCAGAATCAGAATCAGAAT
60200188 GTGAATGCAA
Statistics
Matches: 117, Mismatches: 9, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
36 2 0.02
37 69 0.59
38 9 0.08
39 2 0.02
41 4 0.03
42 3 0.03
43 14 0.12
44 14 0.12
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:60200105 original size:62 final size:62
Alignment explanation
Indices: 60200015--60200187 Score: 292
Period size: 62 Copynumber: 2.8 Consensus size: 62
60200005 AAATGAGAAT
* * * *
60200015 CAGAATTAGAATCAGAATCAGGTGACAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAA
* *
60200077 CAGAATCAGAATCAGTATCAAGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAA
60200139 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAAT
60200188 GTGAATGCAA
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 103 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAA
Found at i:60200167 original size:19 final size:19
Alignment explanation
Indices: 60200022--60200187 Score: 132
Period size: 19 Copynumber: 8.6 Consensus size: 19
60200012 AATCAGAATT
*
60200022 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
*
60200041 AGAATCAAAATCA-G-AATC
1 AGAATCAGAATCAGGTAA-C
*
60200059 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
60200078 AGAATCAGAATCAGTATCAAGTAAC
1 AGAATCAGAATCAG------GTAAC
60200103 AGAATCAGAATCA-G-AACC
1 AGAATCAGAATCAGGTAA-C
*
60200121 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
*
60200140 AGAATCAGAATCA-GTATC
1 AGAATCAGAATCAGGTAAC
60200158 AGGTAA-CAGAATCA-G-AATC
1 A-G-AATCAGAATCAGGTAA-C
60200177 AGAATCAGAAT
1 AGAATCAGAAT
60200188 GTGAATGCAA
Statistics
Matches: 122, Mismatches: 9, Indels: 33
0.74 0.05 0.20
Matches are distributed among these distances:
17 5 0.04
18 40 0.33
19 53 0.43
20 6 0.05
25 18 0.15
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:60200354 original size:27 final size:26
Alignment explanation
Indices: 60200306--60200365 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
60200296 GCGAGGCTGC
*
60200306 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
60200333 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
60200359 TAGATAT
1 CAGATAT
60200366 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:60200452 original size:27 final size:26
Alignment explanation
Indices: 60200404--60200455 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60200394 GCGAGGCTGT
* *
60200404 CAGATATTGTGATGAAGTCACCAGAA
1 CAGATATTGTAATGAAGCCACCAGAA
*
60200430 CAGATATATGTAATGAGGCCACCAGA
1 CAGATAT-TGTAATGAAGCCACCAGA
60200456 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTAATGAAGCCACCAGAA
Found at i:60200730 original size:27 final size:27
Alignment explanation
Indices: 60200700--60201004 Score: 414
Period size: 27 Copynumber: 11.3 Consensus size: 27
60200690 GGGGCAAAAT
* * * *
60200700 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60200727 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * **
60200754 GATATTTCTACCCTACAATGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60200781 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60200808 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60200835 AGTAATTCTACCCTAC-GAGGGTATTTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* *
60200862 GGTAATTCAACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60200889 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60200916 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60200943 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60200970 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
60200997 GGTAATTC
1 GGTAATTC
60201005 AACAAACCAG
Statistics
Matches: 249, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 247 0.99
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:60201038 original size:27 final size:27
Alignment explanation
Indices: 60200905--60201084 Score: 132
Period size: 27 Copynumber: 6.7 Consensus size: 27
60200895 TCTACCCTAT
* * **
60200905 AGGGGTATTTCGGTAATTCTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACC
* **
60200932 AGGGGTATTTTGGTAATTCTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACC
* * **
60200959 AGGGGTATTTTAGTAATTCTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACC
* * **
60200986 AAGGGTATTTCGGTAATTCAACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
60201013 AGGGGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
60201040 AAGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
60201067 AGAGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
60201085 CGGTAAACTA
Statistics
Matches: 131, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.02
27 129 0.98
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:60203953 original size:46 final size:47
Alignment explanation
Indices: 60203882--60204002 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 47
60203872 AGGATTTTAT
* * *
60203882 ATGTATATATGCGATAAGGCAGAATGGCCAATGTGATGAA-ATGAGC
1 ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAC
*
60203928 ATGTATATATGTGGTAAGGCCGAATGGCCAATGTGATGAATATGAAC
1 ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAC
*
60203975 ATGCATATATGTGATAAGGCCGAATGGC
1 ATGTATATATGTGATAAGGCCGAATGGC
60204003 TAATATGAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 37 0.54
47 31 0.46
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAC
Found at i:60204089 original size:50 final size:48
Alignment explanation
Indices: 60203933--60204262 Score: 434
Period size: 48 Copynumber: 6.8 Consensus size: 48
60203923 TGAGCATGTA
* * * *
60203933 TATATGTGGTAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-ACATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATGTATGAGATATG
* * *
60203978 CATATATGTGATAAGGCCGAATGGCTAATATGAAATATGTATGAGATATG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
60204028 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATG
* *
60204078 TAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
60204126 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATG
* *
60204176 TAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
60204224 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
60204263 GGCGATGTGC
Statistics
Matches: 254, Mismatches: 21, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
47 27 0.11
48 123 0.48
49 15 0.06
50 89 0.35
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:60204117 original size:98 final size:98
Alignment explanation
Indices: 60203933--60204259 Score: 502
Period size: 98 Copynumber: 3.4 Consensus size: 98
60203923 TGAGCATGTA
* * * * * * *
60203933 TATATGTGGTAAGGCCGAATGGCCAATGTG--AT-GA-ATATGA-ACATGCATATATGTGATAAG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG--TAAATGTGGTAAA
* *
60203993 GCCGAATGGCTAATATGAAATATGTATGAGATATG
64 GCCGAATGGCTAGTGTGAAATATGTATGAGATATG
60204028 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
60204093 CGAATGGCTAGTGTGAAATATGTATGAGATATG
66 CGAATGGCTAGTGTGAAATATGTATGAGATATG
*
60204126 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATATATATGAGATATGTAAATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
60204191 CGAATGGCTAGTGTGAAATATGTATGAGATATG
66 CGAATGGCTAGTGTGAAATATGTATGAGATATG
*
60204224 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
60204260 GTAGGCGATG
Statistics
Matches: 215, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
95 28 0.13
97 2 0.01
98 175 0.81
99 6 0.03
100 4 0.02
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
CGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:60204459 original size:37 final size:37
Alignment explanation
Indices: 60204409--60204553 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
60204399 GGAAATATAT
60204409 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60204446 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60204483 TCTGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60204520 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
60204554 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60206263 original size:46 final size:46
Alignment explanation
Indices: 60206206--60206381 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
60206196 TGGTTGAGCA
*
60206206 TCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60206252 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60206297 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* **
60206345 CCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60206382 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60206362 original size:93 final size:93
Alignment explanation
Indices: 60206203--60206373 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
60206193 GGATGGTTGA
**
60206203 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
60206268 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
**
60206296 GCATCCG-AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGGTCGTTGAG
1 GCATCCGAAG-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
60206360 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
60206374 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (93 bp):
GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60209997 original size:13 final size:13
Alignment explanation
Indices: 60209979--60210003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60209969 GAATTGATAT
60209979 GTGTGAAAATTTC
1 GTGTGAAAATTTC
60209992 GTGTGAAAATTT
1 GTGTGAAAATTT
60210004 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:60211177 original size:44 final size:44
Alignment explanation
Indices: 60211116--60211280 Score: 155
Period size: 43 Copynumber: 3.8 Consensus size: 44
60211106 GGTTCCAATT
*
60211116 TGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGGTT
1 TGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGGTA
* * * *
60211160 TGTGATTTATGTGTAAGACCATGT-TCGGGACATCGGCATC-GTA
1 TGTGATTTACGTGTAAGACCACGTCT-GGGACGTTGGCATCGGTA
* * * *
60211203 TATAAATT-CGTGTAAGACTCTA--TCTGGGACAG-TGGCATCGATA
1 TGTGATTTACGTGTAAGAC-C-ACGTCTGGGAC-GTTGGCATCGGTA
*
60211246 TGTGA-TTACATGTAAGACCACGTCTGGGACGTTGG
1 TGTGATTTACGTGTAAGACCACGTCTGGGACGTTGG
60211281 TGTTGTACAA
Statistics
Matches: 96, Mismatches: 15, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 35 0.36
44 35 0.36
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
TGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGGTA
Found at i:60211450 original size:31 final size:31
Alignment explanation
Indices: 60211415--60211477 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
60211405 ATTATGAAAG
*
60211415 TAAGGTAAGTAAAGTACTTGTAATTAAGATA
1 TAAGGTAAGTAAAGTACTTGTAATGAAGATA
60211446 TAAGGTAAGTAAAGTACTTGTAATGAAGATA
1 TAAGGTAAGTAAAGTACTTGTAATGAAGATA
60211477 T
1 T
60211478 GAAATATGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (31 bp):
TAAGGTAAGTAAAGTACTTGTAATGAAGATA
Found at i:60218432 original size:39 final size:39
Alignment explanation
Indices: 60218396--60218560 Score: 216
Period size: 39 Copynumber: 4.3 Consensus size: 39
60218386 GCTACTCGTT
*
60218396 CAAATGCCTTCGGGACATAGCCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
*
60218435 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* *
60218475 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAAC-CGCA
1 CAAATGCCTTCGGGACTTAGC-CCGATTTAGTAACTCGCA
* *
60218514 CCAATGCCTTCGGG-CTTAG-CCGAATTAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
60218550 C-AATG-CTTCGG
1 CAAATGCCTTCGG
60218561 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
34 6 0.05
35 4 0.04
36 15 0.13
38 4 0.04
39 42 0.37
40 39 0.34
41 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:60229064 original size:40 final size:40
Alignment explanation
Indices: 60229027--60229199 Score: 269
Period size: 40 Copynumber: 4.3 Consensus size: 40
60229017 GCTACTCGTT
60229027 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
60229067 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
*
60229107 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
* * * *
60229147 C-AATGCCTTCGAGACTTAACCCGG-AAGTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGTTA--TAGTAACTCGCA
60229187 CAAATGCCTTCGG
1 CAAATGCCTTCGG
60229200 ATCTTAGTCC
Statistics
Matches: 125, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 21 0.17
40 93 0.74
41 10 0.08
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
Found at i:60229146 original size:80 final size:80
Alignment explanation
Indices: 60229027--60229250 Score: 285
Period size: 80 Copynumber: 2.8 Consensus size: 80
60229017 GCTACTCGTT
* *
60229027 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
60229092 TTA-TAGTAACTCGCA
66 -AAGTAGTAACTCGCA
* *
60229107 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATGCCTTCGAGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
60229171 AAGTTAGTAACTCGCA
66 AAG-TAGTAACTCGCA
* * * * * *
60229187 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCTGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
60229250 G
64 G
60229251 AACATCATTC
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 23 0.18
80 79 0.63
81 21 0.17
82 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AAGTAGTAACTCGCA
Found at i:60234776 original size:13 final size:13
Alignment explanation
Indices: 60234760--60234784 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60234750 TTAAATTAGT
60234760 TAATTAGTTTAAA
1 TAATTAGTTTAAA
60234773 TAATTAGTTTAA
1 TAATTAGTTTAA
60234785 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:60242471 original size:56 final size:56
Alignment explanation
Indices: 60242385--60242504 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
60242375 ACAAGGGATG
60242385 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
60242441 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
60242497 ATGGGCAA
1 ATGGGCAA
60242505 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:60244041 original size:49 final size:47
Alignment explanation
Indices: 60243962--60244560 Score: 873
Period size: 47 Copynumber: 12.6 Consensus size: 47
60243952 TATTTGAATA
*
60243962 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244009 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244058 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244107 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
60244156 AATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
60244203 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244252 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244299 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244346 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244393 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60244440 AATGTGAAAGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
60244487 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
60244534 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60244561 TCCCGAAGGG
Statistics
Matches: 526, Mismatches: 20, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 336 0.64
49 188 0.36
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:60253307 original size:27 final size:27
Alignment explanation
Indices: 60253151--60253306 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
60253141 TTTACCAAAG
* * *
60253151 TACCCCCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTATAGAATTACCGTTT
*
60253178 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
60253205 TACCCTCGATTTTTAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
60253232 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
60253259 TACCCTCG-TTTATAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
60253285 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
60253307 TAAAATACCC
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 23 0.20
27 94 0.80
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:60253324 original size:81 final size:81
Alignment explanation
Indices: 60253142--60253334 Score: 217
Period size: 81 Copynumber: 2.4 Consensus size: 81
60253132 ATACTTTAGT
* * *
60253142 TTACCAAAGTACCCCCGATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACCATTTTA
1 TTACCAAAATACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTATAAAATTACCATTTTA
* ** *
60253207 CCCTCGATTTTTAGAA
66 CCCTCAATTTACAAAA
*** * * **
60253223 TTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCG-TTTATAAAATTACTGTTTTA
1 TTACCAAAATACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTATAAAATTACCATTTTA
60253287 CCCTCAATTTACAAAA
66 CCCTCAATTTACAAAA
* * *
60253303 TTACTAAAATACCCCCTGATTTGTAAAATTAC
1 TTACCAAAATACCCCC-GATTTATAGAATTAC
60253335 TAAAATACCC
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
80 40 0.44
81 51 0.56
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (81 bp):
TTACCAAAATACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTATAAAATTACCATTTTA
CCCTCAATTTACAAAA
Found at i:60253333 original size:28 final size:28
Alignment explanation
Indices: 60253299--60253387 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 28
60253289 CTCAATTTAC
*
60253299 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCACTGATTTGT
60253327 AAAATTACTAAAATACCCACTGATTTGT
1 AAAATTACTAAAATACCCACTGATTTGT
* *
60253355 AAAATTACTGAAATA-CCA-TCGACTTGT
1 AAAATTACTAAAATACCCACT-GATTTGT
60253382 AAAATT
1 AAAATT
60253388 TACCAAAGTA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.02
27 15 0.26
28 41 0.72
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (28 bp):
AAAATTACTAAAATACCCACTGATTTGT
Found at i:60253435 original size:27 final size:27
Alignment explanation
Indices: 60253396--60253487 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
60253386 TTTACCAAAG
* * *
60253396 TACCCTCGGTTTATAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
60253423 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
60253450 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
60253477 TACCCTCGATT
1 TACCCTCGATT
60253488 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:60253549 original size:27 final size:27
Alignment explanation
Indices: 60253519--60253615 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
60253509 TATAGGGTAG
*
60253519 AATTACCAAAACACCCATAGTTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
* * *
60253546 AATTATCAAAATA-CCACTGGTTTGTGA
1 AATTACCAAAATACCCA-TAGTTTGTAA
* *
60253573 AATTACCGAAATACCC-TCAATTTGTAA
1 AATTACCAAAATACCCAT-AGTTTGTAA
60253600 AATTACCAAAATACCC
1 AATTACCAAAATACCC
60253616 CTCATTTACA
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.07
27 51 0.89
28 2 0.04
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCATAGTTTGTAA
Found at i:60253622 original size:27 final size:27
Alignment explanation
Indices: 60253519--60253631 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
60253509 TATAGGGTAG
* *
60253519 AATTACCAAAACACCCAT-AGTTTGTAA
1 AATTACCAAAATACCCCTCA-TTTGTAA
* * ** *
60253546 AATTATCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTCATTTGTAA
*
60253573 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCTC-ATTTGTAA
**
60253600 AATTACCAAAATACCCCTCATTTACAA
1 AATTACCAAAATACCCCTCATTTGTAA
60253627 AATTA
1 AATTA
60253632 TAGAAATACC
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.04
27 60 0.88
28 5 0.07
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTCATTTGTAA
Found at i:60253630 original size:54 final size:54
Alignment explanation
Indices: 60253539--60253661 Score: 129
Period size: 54 Copynumber: 2.3 Consensus size: 54
60253529 ACACCCATAG
* ** *** *
60253539 TTTGTAAAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTCATTTACAAAATTACAGAAATACCCTCAA
* * **
60253593 TTTGTAAAATTACCAAAATACCCCTCATTTACAAAATTATAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCACTCATTTACAAAATTACAGAAATACCCTCAA
* *
60253647 TTTGTAGATTTACCA
1 TTTGTAAAATTACCA
60253662 GAACACCCTT
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTCATTTACAAAATTACAGAAATACCCTCAA
Found at i:60253733 original size:27 final size:27
Alignment explanation
Indices: 60253690--60253763 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
60253680 AAATGACTAA
*
60253690 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
60253717 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
60253744 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
60253764 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:60254499 original size:20 final size:20
Alignment explanation
Indices: 60254474--60254560 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
60254464 GATATGATAT
*
60254474 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
60254494 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
60254514 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
60254534 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
60254554 ACATGAT
1 ACATGAT
60254561 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:60254710 original size:25 final size:26
Alignment explanation
Indices: 60254610--60254746 Score: 192
Period size: 26 Copynumber: 5.3 Consensus size: 26
60254600 GAGGAAGTGC
60254610 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
60254636 AAAAAGGGCTTATGCCCCAGTTTATCG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
60254663 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
60254689 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
60254714 AAAAGGGATT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
60254737 AAAAGAGGCT
1 AAAAG-GGCT
60254747 AGGCCTCTAG
Statistics
Matches: 101, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.30
26 34 0.34
27 25 0.25
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:60254938 original size:42 final size:42
Alignment explanation
Indices: 60254879--60254970 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
60254869 TAGTCTCCCC
* ** *
60254879 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
60254921 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
60254963 AAATGGGC
1 AAATGGGC
60254971 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:60257311 original size:27 final size:27
Alignment explanation
Indices: 60257289--60257589 Score: 171
Period size: 27 Copynumber: 11.1 Consensus size: 27
60257279 AGTACCCCCA
* * *
60257289 ATTTACAGAATTACCGTTCTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
60257316 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
60257343 ATTTTTAGAATTACCA-TTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
60257369 ATTTATAGAATTACCGTTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCG
* * * ***
60257396 ATTTCTAAAATTACTAAAATACCC-CTG
1 ATTTATAGAATTACCATTTTACCCTC-G
* * * * *** *
60257423 GTTTGTAAAATTACTAAAATACCCCCTG
1 ATTTATAGAATTACCATTTTACCCTC-G
* * * **
60257451 ATTTGTAAAATTACTGA-AATACCCTCG
1 ATTTATAGAATTAC-CATTTTACCCTCG
* ***
60257478 ACTTGTA-AAAATTACCAAAGTACCCTCG
1 A-TT-TATAGAATTACCATTTTACCCTCG
* * *
60257506 GTTTATAAAATTACTATTTTACCCTTC-
1 ATTTATAGAATTACCATTTTACCC-TCG
** **
60257533 ATTTATAGAATTACTGTTTTACCCTTT
1 ATTTATAGAATTACCATTTTACCCTCG
* *
60257560 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
60257587 ATT
1 ATT
60257590 GTGAAATTAC
Statistics
Matches: 226, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
26 28 0.12
27 151 0.67
28 45 0.20
29 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:60257382 original size:53 final size:54
Alignment explanation
Indices: 60257281--60257409 Score: 181
Period size: 53 Copynumber: 2.4 Consensus size: 54
60257271 ATTACCAAAG
* *
60257281 TACCCCCAATTTAC-AGAATTACCGTTCTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCAATTT-CTAGAATTACCATTCTACCCTCGATTTATAGAATTACCATTT
* * *
60257335 TACCCTCGATTTTTAGAATTACCATT-TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTCTAGAATTACCATTCTACCCTCGATTTATAGAATTACCATTT
*
60257388 TACCCTCAATTTCTAAAATTAC
1 TACCCTCAATTTCTAGAATTAC
60257410 TAAAATACCC
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 45 0.68
54 21 0.32
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCAATTTCTAGAATTACCATTCTACCCTCGATTTATAGAATTACCATTT
Found at i:60257457 original size:28 final size:27
Alignment explanation
Indices: 60257396--60257521 Score: 135
Period size: 28 Copynumber: 4.6 Consensus size: 27
60257386 TTTACCCTCA
* *
60257396 ATTTCTAAAATTACTAAAATACCCCTG
1 ATTTGTAAAATTACTAAAATACCCCCG
*
60257423 GTTTGTAAAATTACTAAAATACCCCCTG
1 ATTTGTAAAATTACTAAAATACCCCC-G
* *
60257451 ATTTGTAAAATTACTGAAATACCCTCG
1 ATTTGTAAAATTACTAAAATACCCCCG
* * * *
60257478 ACTTGTAAAAATTACCAAAGTACCCTCG
1 ATTTGT-AAAATTACTAAAATACCCCCG
* *
60257506 GTTTATAAAATTACTA
1 ATTTGTAAAATTACTA
60257522 TTTTACCCTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 38 0.46
28 45 0.54
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACTAAAATACCCCCG
Found at i:60257484 original size:55 final size:55
Alignment explanation
Indices: 60257396--60257521 Score: 139
Period size: 55 Copynumber: 2.3 Consensus size: 55
60257386 TTTACCCTCA
* ** *
60257396 ATTTCTAAAATTACTAAAATACCCCTGGTTTGT-AAAATTACTAAAATACCCCCTG
1 ATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAATACCCCC-G
* * * *
60257451 ATTTGTAAAATTACTGAAATA-CCCTCGACTTGTAAAAATTACCAAAGTACCCTCG
1 ATTTATAAAATTACTAAAATACCCCT-GACTTGTAAAAATTACCAAAATACCCCCG
*
60257506 GTTTATAAAATTACTA
1 ATTTATAAAATTACTA
60257522 TTTTACCCTT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 4 0.07
55 38 0.64
56 17 0.29
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (55 bp):
ATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAATACCCCCG
Found at i:60257724 original size:27 final size:27
Alignment explanation
Indices: 60257396--60257774 Score: 201
Period size: 27 Copynumber: 14.0 Consensus size: 27
60257386 TTTACCCTCA
* * *
60257396 ATTTCTAAAATTACTAAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCTTG
* * *
60257423 GTTTGTAAAATTACTAAAATACCCCCTG
1 ATTTGTAAAATTACCAAAATA-CCCTTG
** *
60257451 ATTTGTAAAATTACTGAAATACCCTCG
1 ATTTGTAAAATTACCAAAATACCCTTG
* * *
60257478 ACTTGTAAAAATTACCAAAGTACCCTCG
1 ATTTGT-AAAATTACCAAAATACCCTTG
* * * *** *
60257506 GTTTATAAAATTACTATTTTACCCTTC
1 ATTTGTAAAATTACCAAAATACCCTTG
* * ***** *
60257533 ATTTATAGAATTACTGTTTTACCCTTT
1 ATTTGTAAAATTACCAAAATACCCTTG
** *** *
60257560 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTGTAAAATTACCAAAATACCCTTG
* ** *
60257587 A-TTGTGAAATTACTGAAATACCCCT-
1 ATTTGTAAAATTACCAAAATACCCTTG
** * * *
60257612 ATAGGGTAGAATTACCAAAACACCCCT-
1 AT-TTGTAAAATTACCAAAATACCCTTG
60257639 AGTTTGTAAAATTACCAAAATACCAC-TG
1 A-TTTGTAAAATTACCAAAATACC-CTTG
* * * * *
60257667 GTTTGTGAAATTACCGAAATACCCCTA
1 ATTTGTAAAATTACCAAAATACCCTTG
60257694 ATTTGTAAAATTACCAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTTG
**
60257721 ATTTACAAAATTA-CAGAAATACCCTTG
1 ATTTGTAAAATTACCA-AAATACCCTTG
* * *
60257748 ATTTGTAGATTTACCAAAACACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTTG
60257775 TAGGATGAAA
Statistics
Matches: 276, Mismatches: 66, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
25 1 0.00
26 17 0.06
27 208 0.75
28 50 0.18
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACCAAAATACCCTTG
Found at i:60257731 original size:81 final size:80
Alignment explanation
Indices: 60257402--60257754 Score: 223
Period size: 81 Copynumber: 4.3 Consensus size: 80
60257392 CTCAATTTCT
* ** **
60257402 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACTG
1 AAAATTACCAAAATA-CCCTGGTTTGTAAAATTACCGAAATA-CCCCT-ATTTGTAAAATTACCA
*
60257467 AAATACCCTCGACTTGTA-
63 AAATACCCTTGACTT-TAC
* * * ** * * * **
60257485 AAAATTACCAAAGTACCCTCGGTTTATAAAATTA-CTATTTTACCCTTCATTTATAGAATTACTG
1 AAAATTACCAAAATACCCT-GGTTTGTAAAATTACCGA-AATACCCCT-ATTTGTAAAATTACCA
*** *
60257549 TTTTACCCTTTA-TTTAC
63 AAATACCCTTGACTTTAC
*** * * * * ** *
60257566 AAAATTACCATTTTACCCTCGATTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAA
1 AAAATTACCAAAATACCCTGGTTTGTAAAATTACCGAAATACCCCTAT-TTGTAAAATTACCAAA
* * * **
60257631 ACACCCCT-AGTTTGT
65 ATACCCTTGACTTTAC
*
60257646 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCCTAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCCT-ATTTGTAAAATTACCAA
60257711 AATACCCTTGA-TTTAC
64 AATACCCTTGACTTTAC
*
60257727 AAAATTA-CAGAAATACCCTTGATTTGTA
1 AAAATTACCA-AAATACCC-TGGTTTGTA
60257755 GATTTACCAA
Statistics
Matches: 204, Mismatches: 55, Indels: 24
0.72 0.19 0.08
Matches are distributed among these distances:
79 3 0.01
80 52 0.25
81 88 0.43
82 33 0.16
83 28 0.14
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACCGAAATACCCCTATTTGTAAAATTACCAAAA
TACCCTTGACTTTAC
Found at i:60258559 original size:20 final size:20
Alignment explanation
Indices: 60258534--60258620 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
60258524 GATATGATAT
* *
60258534 ACATGAT-TGATATGATATAC
1 ACATGATATG-TATGAAATGC
*
60258554 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
60258574 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
60258594 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
60258614 ACATGAT
1 ACATGAT
60258621 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:60258699 original size:26 final size:26
Alignment explanation
Indices: 60258670--60258805 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
60258660 GAGGAAGTGC
60258670 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
60258696 AAAAGGGATTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
60258722 AAAAGGGCTTATGCCCCAGTTTCTTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
60258748 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
60258773 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
60258796 AAAAGAGGCT
1 AAAAG-GGCT
60258806 AGGCCTCTAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.31
26 55 0.57
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:60258749 original size:52 final size:51
Alignment explanation
Indices: 60258670--60258800 Score: 214
Period size: 52 Copynumber: 2.6 Consensus size: 51
60258660 GAGGAAGTGC
60258670 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGATTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGATT-TGCCCCAGTTTACCG
* *
60258722 AAAAGGGCTTATGCCCCAGTTTCTTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGATTTGCCCCAGTTTACCG
60258773 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG
60258801 AGGCTAGGCC
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
48 5 0.07
49 4 0.05
50 8 0.11
51 25 0.33
52 34 0.45
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGATTTGCCCCAGTTTACCG
Found at i:60258997 original size:42 final size:42
Alignment explanation
Indices: 60258938--60259029 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
60258928 TAGTCTCCCC
* ** *
60258938 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
60258980 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
60259022 AAATGGGC
1 AAATGGGC
60259030 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:60276587 original size:38 final size:39
Alignment explanation
Indices: 60276510--60276602 Score: 125
Period size: 38 Copynumber: 2.4 Consensus size: 39
60276500 TAAGGTTTCA
* *
60276510 TAGACTATGACATAATTAAAATCCCTTATTAAAGATGTT
1 TAGATTATGACATAATTAAAATCCCATATTAAAGATGTT
* * *
60276549 TAGATTATGACTTAATTAAAA-CTCATATTAATGATGTT
1 TAGATTATGACATAATTAAAATCCCATATTAAAGATGTT
*
60276587 TAAATTATGACATAAT
1 TAGATTATGACATAAT
60276603 CAATGACTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
38 28 0.60
39 19 0.40
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (39 bp):
TAGATTATGACATAATTAAAATCCCATATTAAAGATGTT
Found at i:60283530 original size:14 final size:15
Alignment explanation
Indices: 60283500--60283530 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60283490 TTTCTTTTTC
60283500 TTCTCTCATTCTTAT
1 TTCTCTCATTCTTAT
60283515 TTCTCTCATT-TTAT
1 TTCTCTCATTCTTAT
60283529 TT
1 TT
60283531 GTTTCCCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.65
Consensus pattern (15 bp):
TTCTCTCATTCTTAT
Found at i:60283616 original size:22 final size:21
Alignment explanation
Indices: 60283575--60283614 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
60283565 TTTTTAAATT
60283575 CTCTTTTCTTTTTCTTTTTCA
1 CTCTTTTCTTTTTCTTTTTCA
*
60283596 CTCTTTTCTTTTTGTTTTT
1 CTCTTTTCTTTTTCTTTTT
60283615 TCTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.20, G:0.03, T:0.75
Consensus pattern (21 bp):
CTCTTTTCTTTTTCTTTTTCA
Found at i:60283621 original size:22 final size:21
Alignment explanation
Indices: 60283574--60283621 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
60283564 TTTTTTAAAT
60283574 TCTCTTTTCTTTTTCTTTTTC
1 TCTCTTTTCTTTTTCTTTTTC
* *
60283595 ACTCTTTTCTTTTTGTTTTTTC
1 TCTCTTTTCTTTTT-CTTTTTC
60283617 TCTCT
1 TCTCT
60283622 CAATTATTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (21 bp):
TCTCTTTTCTTTTTCTTTTTC
Found at i:60286620 original size:527 final size:527
Alignment explanation
Indices: 60285627--60286679 Score: 2029
Period size: 527 Copynumber: 2.0 Consensus size: 527
60285617 TTGTAGAATG
60285627 AAATTTGGAGCTCGGGAAATGATATCTTTCAACACTAGCTCTTCTCTTTTTTTTTTAATTTCAAA
1 AAATTTGGAGCTCGGGAAATGATATCTTTCAACACTAGCTCTTCTCTTTTTTTTTTAATTTCAAA
60285692 TTTTCTTCTTTTATATATATTGCAAAATTTGTACTTCAAATATACTATGTATTCCTCTTTTTTTA
66 TTTTCTTCTTTTATATATATTGCAAAATTTGTACTTCAAATATACTATGTATTCCTCTTTTTTTA
60285757 ACAAAATTTTTTTTCAAATATTTTTTCTTCAAAAACTCACCCCGAGAATGCTAGAACATCGATAC
131 ACAAAATTTTTTTTCAAATATTTTTTCTTCAAAAACTCACCCCGAGAATGCTAGAACATCGATAC
*
60285822 CTCTCAATTTTGGCTAGCTTTGATACCAAATGATGCAATCTCGTACTCGTGACTTGATTTGAGTC
196 CTCTCAATTTTGGCTAGCTTTGATACCAAATGATGCAATCTCGTACTCATGACTTGATTTGAGTC
60285887 GCGGGTGCTCCAAATCGTAAAATGAAGAAGTATAGGTTTAGTTCTTGAAAGGGGTTAGAAACGAA
261 GCGGGTGCTCCAAATCGTAAAATGAAGAAGTATAGGTTTAGTTCTTGAAAGGGGTTAGAAACGAA
* *
60285952 CAATTTACCTTGAAAACAAAGGGTTAAGTGTTTAGAGATGGTAAAAATAGGTTCGGTCTATGGCT
326 CAATTTACCTTGAAAACAAAGGGTTAAGTGTTTAGAGATGGTAAAAATAGGCTCGGTCTAAGGCT
60286017 AAAGAAAGAACCAATATTATATGGTAATATTGACCCAAATCTTATGACAGCTCTTAAGTCGAAAT
391 AAAGAAAGAACCAATATTATATGGTAATATTGACCCAAATCTTATGACAGCTCTTAAGTCGAAAT
60286082 TAGTGTTGAAAGTTTAACTGTAACCCACTATCTATGAGAGATAGGAACCAAACTGTATTGGTTGA
456 TAGTGTTGAAAGTTTAACTGTAACCCACTATCTATGAGAGATAGGAACCAAACTGTATTGGTTGA
60286147 ACGCCAC
521 ACGCCAC
60286154 AAATTTGGAGCTC-GGAAATGATATCTTTCAACACTAGCTCTTCT-TTTTTTTTTTAATTTCAAA
1 AAATTTGGAGCTCGGGAAATGATATCTTTCAACACTAGCTCTTCTCTTTTTTTTTTAATTTCAAA
60286217 TTTTCTTCTTTTTTATATATATTGCAAAATTTGTACTTCAAATATACTATGTATTCCTCTTTTTT
66 TTTTCTTC--TTTTATATATATTGCAAAATTTGTACTTCAAATATACTATGTATTCCTCTTTTTT
60286282 TAACAAAATTTTTTTTCAAATATTTTTTCTTCAAAAACTCACCCCGAGAATGCTAGAACATCGAT
129 TAACAAAATTTTTTTTCAAATATTTTTTCTTCAAAAACTCACCCCGAGAATGCTAGAACATCGAT
60286347 ACCTCTCAATTTTGGCTAGCTTTGATACCAAATGATGCAATCTCGTACTCATGACTTGATTTGAG
194 ACCTCTCAATTTTGGCTAGCTTTGATACCAAATGATGCAATCTCGTACTCATGACTTGATTTGAG
* *
60286412 TCGCGGGTGCTCCCAATCGTAAAATGAAGAAGTATAGGTTTAGTTCTTGAAAGGGGTTAGAAATG
259 TCGCGGGTGCTCCAAATCGTAAAATGAAGAAGTATAGGTTTAGTTCTTGAAAGGGGTTAGAAACG
60286477 AACAATTTACCTTGAAAACAAAGGGTTAAGTGTTTAGAGATGGTAAAAATAGGCTCGGTCTAAGG
324 AACAATTTACCTTGAAAACAAAGGGTTAAGTGTTTAGAGATGGTAAAAATAGGCTCGGTCTAAGG
60286542 CTAAAGAAAGAACCAATATTATATGGTAATATTGACCCAAATCTTATGACAGCTCTTAAGTCGAA
389 CTAAAGAAAGAACCAATATTATATGGTAATATTGACCCAAATCTTATGACAGCTCTTAAGTCGAA
60286607 ATTAGTGTTGAAAGTTTAACTGTAACCCACTATCTATGAGAGATAGGAACCAAACTGTATTGGTT
454 ATTAGTGTTGAAAGTTTAACTGTAACCCACTATCTATGAGAGATAGGAACCAAACTGTATTGGTT
60286672 GAACGCCA
519 GAACGCCA
60286680 TACTCCTAAG
Statistics
Matches: 519, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
525 27 0.05
526 31 0.06
527 461 0.89
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (527 bp):
AAATTTGGAGCTCGGGAAATGATATCTTTCAACACTAGCTCTTCTCTTTTTTTTTTAATTTCAAA
TTTTCTTCTTTTATATATATTGCAAAATTTGTACTTCAAATATACTATGTATTCCTCTTTTTTTA
ACAAAATTTTTTTTCAAATATTTTTTCTTCAAAAACTCACCCCGAGAATGCTAGAACATCGATAC
CTCTCAATTTTGGCTAGCTTTGATACCAAATGATGCAATCTCGTACTCATGACTTGATTTGAGTC
GCGGGTGCTCCAAATCGTAAAATGAAGAAGTATAGGTTTAGTTCTTGAAAGGGGTTAGAAACGAA
CAATTTACCTTGAAAACAAAGGGTTAAGTGTTTAGAGATGGTAAAAATAGGCTCGGTCTAAGGCT
AAAGAAAGAACCAATATTATATGGTAATATTGACCCAAATCTTATGACAGCTCTTAAGTCGAAAT
TAGTGTTGAAAGTTTAACTGTAACCCACTATCTATGAGAGATAGGAACCAAACTGTATTGGTTGA
ACGCCAC
Found at i:60296514 original size:40 final size:40
Alignment explanation
Indices: 60296470--60296567 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 40
60296460 GATAAATCGA
* ** *
60296470 TTATATTTGGCACTAAGTGTGCGATTTGAAATAGTTTCGG
1 TTATATATGGCACTAAGTGTGCGAAATGAAATAGCTTCGG
* * *
60296510 TTATAAATAGCACTAAGTGTGCGAAATGGAATAGCTTCGG
1 TTATATATGGCACTAAGTGTGCGAAATGAAATAGCTTCGG
*
60296550 CTATATGA-GGCACTAAGT
1 TTATAT-ATGGCACTAAGT
60296568 ATTCGGGATC
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 46 0.98
41 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (40 bp):
TTATATATGGCACTAAGTGTGCGAAATGAAATAGCTTCGG
Found at i:60299231 original size:47 final size:46
Alignment explanation
Indices: 60299171--60299293 Score: 128
Period size: 47 Copynumber: 2.6 Consensus size: 46
60299161 TCGAGGTCGT
* *
60299171 TGCATGTCTCAGACATGTCTTACACTAGCCT-TCATCTCAA-T-GCTGA
1 TGCATGTCCCAGACATGTCTTACACTAGCCTCTCA--T-AAGTGGCCGA
*
60299217 TGCCATGTCCCAGACATGGTCTTACACT-GGCTCTCATAATGTGGCCGA
1 TG-CATGTCCCAGACAT-GTCTTACACTAGCCTCTCATAA-GTGGCCGA
*
60299265 TGCATGTCCCAAACATGTCTTACACTAGC
1 TGCATGTCCCAGACATGTCTTACACTAGC
60299294 TCACACACGA
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
45 2 0.03
46 13 0.20
47 31 0.48
48 19 0.29
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
TGCATGTCCCAGACATGTCTTACACTAGCCTCTCATAAGTGGCCGA
Found at i:60304426 original size:46 final size:46
Alignment explanation
Indices: 60304363--60304487 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
60304353 GGTGGTATAT
* *
60304363 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAACCA-CAACATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-ACCATCAACACGA
* *** ** *
60304409 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGTATTGAGACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCACCATCAACACGA
60304455 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
60304488 GGCCTCGGTA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 1 0.01
46 67 0.99
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCACCATCAACACGA
Found at i:60304611 original size:49 final size:49
Alignment explanation
Indices: 60304554--60304677 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 49
60304544 TGGGTGTCAG
*
60304554 TGTAAGACCTGTCTCGGACATGGCATCGACACT-GATAAATGAGAGCCAA
1 TGTAAGACCTGTCTCGGACATGGCATCGAC-CTCGATAAATGAAAGCCAA
* * * ** *
60304603 TGTAAGACCTTTC-CGAGACATGGCATCGGCCTCGATATATGAAAGTTAG
1 TGTAAGACCTGTCTCG-GACATGGCATCGACCTCGATAAATGAAAGCCAA
* *
60304652 TGTAAGACCTGTCTGGGACACGGCAT
1 TGTAAGACCTGTCTCGGACATGGCAT
60304678 AGACTTTAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
48 4 0.06
49 57 0.92
50 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTCGGACATGGCATCGACCTCGATAAATGAAAGCCAA
Found at i:60305065 original size:34 final size:34
Alignment explanation
Indices: 60305022--60305089 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
60305012 CAACTTACTA
60305022 AGCTTTATGCTTACCCAATTTCCTTTCCATTTTC
1 AGCTTTATGCTTACCCAATTTCCTTTCCATTTTC
*
60305056 AGCTTTATGCTTACCCCATTTCCTTTCCATTTTC
1 AGCTTTATGCTTACCCAATTTCCTTTCCATTTTC
60305090 TTATAGTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.16, C:0.31, G:0.06, T:0.47
Consensus pattern (34 bp):
AGCTTTATGCTTACCCAATTTCCTTTCCATTTTC
Found at i:60311385 original size:33 final size:30
Alignment explanation
Indices: 60311340--60311421 Score: 87
Period size: 29 Copynumber: 2.7 Consensus size: 30
60311330 TCAGTACAAT
*
60311340 CTGGGCCAAAGCCCTATTCATTCTCAAC-ATATA
1 CTGGGCCGAAGCCCT-TTCA-T-TCAACGAT-TA
*
60311373 CTGGGCCGAAG-CCTTTCATTCAACGGTTA
1 CTGGGCCGAAGCCCTTTCATTCAACGATTA
*
60311402 CTGGGCCGAAGCCTTTTCAT
1 CTGGGCCGAAGCCCTTTCAT
60311422 AAATCATATC
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 18 0.41
30 9 0.20
31 4 0.09
32 3 0.07
33 10 0.23
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (30 bp):
CTGGGCCGAAGCCCTTTCATTCAACGATTA
Found at i:60311689 original size:24 final size:24
Alignment explanation
Indices: 60311656--60311738 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
60311646 CTAGAGGCTT
* *
60311656 AGCCTCTTTTAGT-AACTAGGGCAA
1 AGCC-CTTTTTGTAAACTGGGGCAA
60311680 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCCTTTTTG-TAAACTGGGGCAA
* *
60311705 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-TGTAAACTGGGGCAA
60311730 AGCCCTTTT
1 AGCCCTTTT
60311739 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 6 0.12
24 5 0.10
25 40 0.77
26 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTTGTAAACTGGGGCAA
Found at i:60311697 original size:25 final size:25
Alignment explanation
Indices: 60311669--60311738 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
60311659 CTCTTTTAGT
* *
60311669 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60311694 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60311719 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60311739 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:60311971 original size:27 final size:27
Alignment explanation
Indices: 60311941--60312157 Score: 319
Period size: 27 Copynumber: 8.0 Consensus size: 27
60311931 GGGGCAAAAT
* *
60311941 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
60311968 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60311995 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
60312022 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60312049 GATAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
60312076 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
60312103 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60312130 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
60312157 G
1 G
60312158 ATATTTTACA
Statistics
Matches: 170, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 3 0.02
27 164 0.96
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:60312197 original size:27 final size:27
Alignment explanation
Indices: 60312148--60312367 Score: 166
Period size: 27 Copynumber: 8.2 Consensus size: 27
60312138 TACCTTACAG
* *
60312148 GGGTATTTCGAT-ATTTTACAAATCGA
1 GGGTATTTTGATAATTTTACAAATCAA
* *
60312174 GAGTATTTTGATAATTTCACAAATCAA
1 GGGTATTTTGATAATTTTACAAATCAA
* **
60312201 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGATAATTTTACAAATCAA
* *
60312228 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGATAATTTTACAAATC-AA
* *
60312255 GGGTATTTT-AGTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTACAAATCAA
* ** *
60312282 GGGTAGTTTGGA-AATTTTACTGATCGA
1 GGGTA-TTTTGATAATTTTACAAATCAA
*
60312309 GGGTATTTTGGTAATTTTGTA-AAAT-AA
1 GGGTATTTTGATAA-TTT-TACAAATCAA
** *
60312336 GGGTATTTT-AGTAATTTTGTAAATCGA
1 GGGTATTTTGA-TAATTTTACAAATCAA
60312363 GGGTA
1 GGGTA
60312368 AAACGGTAAT
Statistics
Matches: 156, Mismatches: 26, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.01
26 22 0.14
27 121 0.78
28 9 0.06
29 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAATCAA
Found at i:60312234 original size:54 final size:54
Alignment explanation
Indices: 60312160--60312367 Score: 188
Period size: 54 Copynumber: 3.9 Consensus size: 54
60312150 GTATTTCGAT
* * * *
60312160 ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTGGTA
* * * *
60312214 ATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGATAATTTTACAAATC-AAGGGTATTTTGGTA
* * ** *
60312268 ATTTTACAAACCAGGGGTAGTTTGGA-AATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTA-TTTTGATAATTTTACAAATCAAGGGTATTTTGGTA
** ** ** *
60312322 ATTTTGTAAAATAAGGGTATTTT-AGTAATTTTGTAAATCGAGGGTA
1 ATTTTACAAACCAAGGGTATTTTGA-TAATTTTACAAATCAAGGGTA
60312368 AAACGGTAAT
Statistics
Matches: 122, Mismatches: 27, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
52 1 0.01
53 4 0.03
54 112 0.92
55 5 0.04
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTGGTA
Found at i:60312277 original size:81 final size:81
Alignment explanation
Indices: 60312176--60312367 Score: 217
Period size: 81 Copynumber: 2.4 Consensus size: 81
60312166 CAAATCGAGA
* * *
60312176 GTATTTT-GATAATTTCACAAATCAAGGGTATTTTGGTAATTTTACA-AGCCAAGGGTATTTTGG
1 GTATTTTAG-TAATTTTACAAATCAAGGGTAGTTTGGAAATTTTACAGA-CCAAGGGTATTTTGG
* *
60312239 TAATTTTACAAACTAGGG
64 TAATTTTACAAAATAAGG
* * * * *
60312257 GTATTTTAGTAATTTTACAAACCAGGGGTAGTTTGGAAATTTTACTGATCGAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAATCAAGGGTAGTTTGGAAATTTTACAGACCAAGGGTATTTTGGTA
**
60312322 ATTTTGTAAAATAAGG
66 ATTTTACAAAATAAGG
** *
60312338 GTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GTATTTTAGTAATTTTACAAATCAAGGGTA
60312368 AAACGGTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 90 0.98
82 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAATCAAGGGTAGTTTGGAAATTTTACAGACCAAGGGTATTTTGGTA
ATTTTACAAAATAAGG
Found at i:60312376 original size:27 final size:27
Alignment explanation
Indices: 60312345--60312475 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
60312335 AGGGTATTTT
60312345 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
60312372 GGTAATTTTGTAAATTGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
60312399 AGTAATTTTGTAAATCGAGGATAACAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
60312426 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
60312453 GGTAATTTTGTAAATCGATGGTA
1 AGTAATTTTGTAAATCGAGGGTA
60312476 TATAAATCAA
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (27 bp):
AGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:60312376 original size:54 final size:54
Alignment explanation
Indices: 60312318--60312470 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 54
60312308 AGGGTATTTT
*** *
60312318 GGTAATTTTGTAAAATAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAAATAAGGGTAAAATAGTAATTTTGTAAATCGAGGATAAAAC
* * *
60312372 GGTAATTTTGTAAATTGAGGGTAAAATAGTAATTTTGTAAATCGAGGATAACAC
1 GGTAATTTTGTAAAATAAGGGTAAAATAGTAATTTTGTAAATCGAGGATAAAAC
* * * * *
60312426 AGTAATTCTAT-AAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
1 GGTAATTTTGTAAAAT-AAGGGTAAAATAGTAATTTTGTAAATCGA
60312471 TGGTATATAA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 3 0.03
54 83 0.97
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.35
Consensus pattern (54 bp):
GGTAATTTTGTAAAATAAGGGTAAAATAGTAATTTTGTAAATCGAGGATAAAAC
Found at i:60312481 original size:42 final size:42
Alignment explanation
Indices: 60312434--60312517 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
60312424 ACAGTAATTC
* * * *
60312434 TATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGATGGTA
1 TATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
*
60312476 TATAAATCAAGGGTAAGATGGTAATTCTATAAATCGAGGGTA
1 TATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
60312518 AAATGGTAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (42 bp):
TATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
Found at i:60312563 original size:27 final size:27
Alignment explanation
Indices: 60312476--60312555 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
60312466 ATCGATGGTA
*
60312476 TATAAATCAAGGGTAAGATGGTAATTC
1 TATAAATCAAGGGTAAAATGGTAATTC
* *
60312503 TATAAATCGAGGGTAAAATGGTAACTC
1 TATAAATCAAGGGTAAAATGGTAATTC
*
60312530 TGTAAATCAAGGGTAAAATGGTAATT
1 TATAAATCAAGGGTAAAATGGTAATT
60312556 TTACAAATTG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
TATAAATCAAGGGTAAAATGGTAATTC
Found at i:60312569 original size:27 final size:27
Alignment explanation
Indices: 60312476--60312569 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 27
60312466 ATCGATGGTA
* *
60312476 TATAAATCAAGGGTAAGATGGTAATTC
1 TATAAATCGAGGGTAAAATGGTAATTC
*
60312503 TATAAATCGAGGGTAAAATGGTAACTC
1 TATAAATCGAGGGTAAAATGGTAATTC
* * *
60312530 TGTAAATCAAGGGTAAAATGGTAATTT
1 TATAAATCGAGGGTAAAATGGTAATTC
* *
60312557 TACAAATTGAGGG
1 TATAAATCGAGGG
60312570 CATTTCAGTA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
TATAAATCGAGGGTAAAATGGTAATTC
Found at i:60321941 original size:46 final size:47
Alignment explanation
Indices: 60321890--60322113 Score: 218
Period size: 47 Copynumber: 4.8 Consensus size: 47
60321880 ATGATTGAGC
60321890 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* * *
60321937 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
* * *
60321982 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
60322029 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--G
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
*
60322077 --CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCC-GAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
60322114 GCGGGTTACA
Statistics
Matches: 159, Mismatches: 8, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 5 0.03
46 61 0.38
47 76 0.48
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG
Found at i:60322006 original size:47 final size:47
Alignment explanation
Indices: 60321888--60322059 Score: 246
Period size: 47 Copynumber: 3.7 Consensus size: 47
60321878 GGATGATTGA
* * *
60321888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
60321936 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
60321981 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
60322028 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
60322060 ACTTATGGAT
Statistics
Matches: 116, Mismatches: 3, Indels: 11
0.89 0.02 0.08
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 29 0.25
47 76 0.66
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60324598 original size:42 final size:43
Alignment explanation
Indices: 60324512--60324652 Score: 144
Period size: 44 Copynumber: 3.3 Consensus size: 43
60324502 TCTCAGATGT
* * *
60324512 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAACAG
* * **
60324555 GGTCTTACACGAAATCAAATA-CGATGCTAATGTCCTAGGCAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAACAG
* * *
60324597 GGTCTTACACGTAAATCATAA-GTCGATGCCAACGTCCCAGAC-G
1 GGTCTTACACG-AAATCA-AATATCGATGCCAATGTCCCAAACAG
60324640 TGGTCTTACACGA
1 -GGTCTTACACGA
60324653 CAACACATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
42 27 0.33
43 27 0.33
44 28 0.34
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAACAG
Found at i:60330127 original size:27 final size:27
Alignment explanation
Indices: 60330094--60330147 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
60330084 TGTCATGTGA
* *
60330094 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
60330121 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
60330148 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:60330475 original size:49 final size:49
Alignment explanation
Indices: 60330394--60330639 Score: 240
Period size: 49 Copynumber: 5.0 Consensus size: 49
60330384 TCTATTGTGA
* *
60330394 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * ** *
60330443 GGTCGCATCTGTAGTACTAAGTGCAGGCTACTATGCCTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * * **
60330494 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * *
60330543 AGGTCACGTGTGTAGTAGTAAGTGCAAGCGACTACTTGTATCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
60330593 GGTCGCATTTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
60330640 CCTTGTCTAC
Statistics
Matches: 155, Mismatches: 39, Indels: 6
0.77 0.19 0.03
Matches are distributed among these distances:
49 78 0.50
50 40 0.26
51 37 0.24
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:60336617 original size:27 final size:27
Alignment explanation
Indices: 60336576--60336629 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
60336566 TGTCATGTGA
* *
60336576 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
60336603 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
60336630 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:60336970 original size:49 final size:50
Alignment explanation
Indices: 60336882--60337120 Score: 275
Period size: 49 Copynumber: 4.8 Consensus size: 50
60336872 TGAGGTGACG
*
60336882 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
* **** * * * *
60336931 TGTGTAGTACTAAGTGCAGGCCACTATACCTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAGGTCACA
* * ** *
60336982 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
* *
60337032 TGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
* * *
60337081 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA
60337121 CCTTGTCTAC
Statistics
Matches: 157, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 75 0.48
50 47 0.30
51 35 0.22
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
Found at i:60337118 original size:99 final size:100
Alignment explanation
Indices: 60336882--60337120 Score: 293
Period size: 100 Copynumber: 2.4 Consensus size: 100
60336872 TGAGGTGACG
* * *
60336882 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTATAGTACTAAGTG
* *
60336947 CAGGCCACTATACCTACCCGATAACTTCGATCACG
66 CAGGCCACTACACCTACCCGATAACTTCGATCACA
* ** *
60336982 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTATAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTATAGTACTAAGT
* *** * * *
60337047 GCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
65 GCAGGCCACTACACCTACCCGATAACTTCGATCACA
* *
60337081 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
60337121 CCTTGTCTAC
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 39 0.33
100 40 0.34
101 38 0.32
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTATAGTACTAAGTG
CAGGCCACTACACCTACCCGATAACTTCGATCACA
Found at i:60342818 original size:4 final size:4
Alignment explanation
Indices: 60342811--60342837 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
60342801 ATACATAGGT
60342811 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
60342838 TTTTATTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:60347388 original size:40 final size:40
Alignment explanation
Indices: 60347344--60347492 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
60347334 GCTACTTGCT
*
60347344 CAAATGTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60347384 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
60347424 CAAATGCCTTCGGAACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
60347464 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60347493 CATCCAAATA
Statistics
Matches: 99, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 97 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60354073 original size:18 final size:18
Alignment explanation
Indices: 60354052--60354093 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
60354042 AATCGGTTAA
60354052 TCAGTAGCAATCATTTAT
1 TCAGTAGCAATCATTTAT
* * *
60354070 TCAGTATCAGTCGTTTAT
1 TCAGTAGCAATCATTTAT
60354088 TCAGTA
1 TCAGTA
60354094 ACGGACAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (18 bp):
TCAGTAGCAATCATTTAT
Found at i:60354258 original size:6 final size:6
Alignment explanation
Indices: 60354249--60354278 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
60354239 GTCAGTAATG
*
60354249 GTAACA GTAACA GTAACA GTAATA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA
60354279 ATAGCGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:60354258 original size:12 final size:12
Alignment explanation
Indices: 60354241--60354278 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
60354231 TACACTATGT
*
60354241 CAGTAATGGTAA
1 CAGTAATAGTAA
*
60354253 CAGTAACAGTAA
1 CAGTAATAGTAA
60354265 CAGTAATAGTAA
1 CAGTAATAGTAA
60354277 CA
1 CA
60354279 ATAGCGGTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.21
Consensus pattern (12 bp):
CAGTAATAGTAA
Found at i:60355166 original size:19 final size:19
Alignment explanation
Indices: 60355142--60355178 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60355132 TCAATTTTTC
*
60355142 CTTTTTCTTTCTTTCCTTT
1 CTTTTTCCTTCTTTCCTTT
60355161 CTTTTTCCTTCTTTCCTT
1 CTTTTTCCTTCTTTCCTT
60355179 CCCTTGTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
CTTTTTCCTTCTTTCCTTT
Found at i:60355221 original size:33 final size:33
Alignment explanation
Indices: 60355169--60355249 Score: 119
Period size: 33 Copynumber: 2.4 Consensus size: 33
60355159 TTCTTTTTCC
**
60355169 TTCTTTCCTTCCC-TTGTTTCGTCCCTGTTCTCTG
1 TTCTTT-C-TCCCTTTGTTTCGTCCCTACTCTCTG
60355203 TTCTTTCTCCCTTTGTTTCGTCCCTACTCTCTG
1 TTCTTTCTCCCTTTGTTTCGTCCCTACTCTCTG
60355236 TTCTTTCTCCCTTT
1 TTCTTTCTCCCTTT
60355250 CTTTTTCTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
32 4 0.09
33 34 0.77
34 6 0.14
ACGTcount: A:0.01, C:0.36, G:0.09, T:0.54
Consensus pattern (33 bp):
TTCTTTCTCCCTTTGTTTCGTCCCTACTCTCTG
Found at i:60361998 original size:42 final size:43
Alignment explanation
Indices: 60361897--60362049 Score: 123
Period size: 43 Copynumber: 3.6 Consensus size: 43
60361887 AATGCCAACA
* * * * * *
60361897 TCCCAGACGTGGTCTTACATGTAATCAAATTTCGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATCAAATTACGATACCAATG
*
60361940 TCCTAGACA-GAGTCTTACACGAAATCAAA-TACGATACCAATG
1 TCCCAGACATG-GTCTTACACGAAATCAAATTACGATACCAATG
* * * ** **
60361982 TCCCAAACATGGTCTTACACGTAAACCATAAGT-CGATGTCAACA
1 TCCCAGACATGGTCTTACACG-AAATCA-AATTACGATACCAATG
*
60362026 TCCCAGACGTGGTCTTACACGAAA
1 TCCCAGACATGGTCTTACACGAAA
60362050 ACACATATCG
Statistics
Matches: 89, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
42 28 0.31
43 32 0.36
44 28 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCAAATTACGATACCAATG
Found at i:60367268 original size:24 final size:24
Alignment explanation
Indices: 60367230--60367280 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
60367220 CGAGCACTAA
60367230 TAAAACAGAGAAAAGAAAACCTAG
1 TAAAACAGAGAAAAGAAAACCTAG
* * *
60367254 TAAAACTGAGTAAAGAAAATCTAG
1 TAAAACAGAGAAAAGAAAACCTAG
60367278 TAA
1 TAA
60367281 GCATTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.59, C:0.10, G:0.16, T:0.16
Consensus pattern (24 bp):
TAAAACAGAGAAAAGAAAACCTAG
Done.