Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 182 of 332
Found at i:60370519 original size:47 final size:47
Alignment explanation
Indices: 60370452--60370812 Score: 634
Period size: 47 Copynumber: 7.7 Consensus size: 47
60370442 GAAATGATAG
*
60370452 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60370499 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60370546 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60370593 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
60370642 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
60370689 TAAGGCCTAA-AGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60370735 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60370782 TAAGGCCTAATGGCCGATGTGATGAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGA
60370813 TAAGGCCTAA
Statistics
Matches: 302, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 45 0.15
47 210 0.70
49 47 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60370773 original size:189 final size:190
Alignment explanation
Indices: 60370452--60370812 Score: 688
Period size: 189 Copynumber: 1.9 Consensus size: 190
60370442 GAAATGATAG
*
60370452 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
60370517 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
60370582 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
131 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
60370642 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAA-AGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
60370706 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
60370771 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
131 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
60370813 TAAGGCCTAA
Statistics
Matches: 168, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
189 113 0.67
190 55 0.33
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:60370814 original size:31 final size:31
Alignment explanation
Indices: 60370776--60370843 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
60370766 AAGTGTATAT
60370776 ATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGA
60370807 ATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGA
60370838 ATGTGA
1 ATGTGA
60370844 AAGTGTATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.26
Consensus pattern (31 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60370819 original size:78 final size:78
Alignment explanation
Indices: 60370730--60370890 Score: 313
Period size: 78 Copynumber: 2.1 Consensus size: 78
60370720 AGTGTATATG
60370730 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
60370795 CCGATGTGATGAA
66 CCGATGTGATGAA
*
60370808 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
60370873 CCGATGTGATGAA
66 CCGATGTGATGAA
60370886 TGTGA
1 TGTGA
60370891 AAGTGTATAT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (78 bp):
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAA
Found at i:60370825 original size:171 final size:171
Alignment explanation
Indices: 60370636--60370956 Score: 509
Period size: 171 Copynumber: 1.9 Consensus size: 171
60370626 GTGTATATAT
*
60370636 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAA-A
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* * * *
60370700 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AAGGCCGAATAGCCAACGTGATGAATGTG
* *
60370765 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
130 AAAGTGCATAAATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60370807 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
** * * *
60370872 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGCCGAGTGGCCAACGTGATGGATGTGA
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGGCCGAATAGCCAACGTGATGAATGTGA
60370937 AAGTGCATAAATGTGATAAG
131 AAGTGCATAAATGTGATAAG
60370957 TCCCGAAGGG
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
171 102 0.75
172 34 0.25
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (171 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGGCCGAATAGCCAACGTGATGAATGTGA
AAGTGCATAAATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60370858 original size:47 final size:47
Alignment explanation
Indices: 60370807--60370956 Score: 212
Period size: 47 Copynumber: 3.2 Consensus size: 47
60370797 GATGTGATGA
60370807 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
60370854 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
** * * * * * * *
60370901 ATGTGA-CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
60370947 ATGTGATAAG
1 ATGTGATAAG
60370957 TCCCGAAGGG
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
46 37 0.41
47 54 0.59
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:60371130 original size:36 final size:37
Alignment explanation
Indices: 60371075--60371152 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
60371065 CCGAGCTCTA
* *
60371075 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60371111 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60371148 AAGAC
1 AAGAC
60371153 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60373854 original size:13 final size:13
Alignment explanation
Indices: 60373838--60373863 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60373828 TTATTTACCG
60373838 AAATTATTATAAT
1 AAATTATTATAAT
60373851 AAATTATTATAAT
1 AAATTATTATAAT
60373864 TATGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:60377605 original size:20 final size:21
Alignment explanation
Indices: 60377580--60377620 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
60377570 ATTATTTTTT
60377580 AAATTG-AAAAATATTTATAC
1 AAATTGAAAAAATATTTATAC
60377600 AAATTGAAAAAATATTTATAC
1 AAATTGAAAAAATATTTATAC
60377621 TTTGAGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATTGAAAAAATATTTATAC
Found at i:60378193 original size:5 final size:5
Alignment explanation
Indices: 60378183--60378224 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
60378173 CTATGGATTA
60378183 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
60378225 ATGTATGACG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:60378906 original size:25 final size:26
Alignment explanation
Indices: 60378878--60378927 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
60378868 GAATACCTAT
*
60378878 TCACTTGACAC-TGGCGAACTCCTCC
1 TCACCTGACACTTGGCGAACTCCTCC
*
60378903 TCACCTGATACTTTGGCGAACTCCT
1 TCACCTGACAC-TTGGCGAACTCCT
60378928 GCTTGCTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
27 12 0.57
ACGTcount: A:0.20, C:0.36, G:0.16, T:0.28
Consensus pattern (26 bp):
TCACCTGACACTTGGCGAACTCCTCC
Found at i:60383018 original size:49 final size:50
Alignment explanation
Indices: 60382948--60383172 Score: 267
Period size: 49 Copynumber: 4.5 Consensus size: 50
60382938 TGAGGTCATG
*
60382948 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
* * * * *
60382997 TGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCGGATAA-TTAGGTCACA
* * * ** *
60383048 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
* * *
60383098 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
*
60383147 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
60383173 TGCATACTAG
Statistics
Matches: 152, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
49 67 0.44
50 48 0.32
51 37 0.24
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
Found at i:60383131 original size:101 final size:98
Alignment explanation
Indices: 60382947--60383172 Score: 290
Period size: 101 Copynumber: 2.3 Consensus size: 98
60382937 GTGAGGTCAT
* *
60382947 GTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
*
60383012 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTACGCGTACCCGATAA-TT-GATCAC
* * ** *
60383047 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
* * * * *
60383112 TGTAGGCTACTACGTGTACCGGATAATTGGTCGC
65 TGCAGGCTACTACGCGTACCCGATAATTGATCAC
* *
60383146 ATGTGTAGTACTAAGTGTAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
60383173 TGCATACTAG
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 29 0.26
100 40 0.36
101 41 0.37
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGTACCCGATAATTGATCAC
Found at i:60406908 original size:20 final size:20
Alignment explanation
Indices: 60406863--60406900 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
60406853 GTTGAGTTCG
*
60406863 TACTTTGGCCCATTTTCTCT
1 TACTTTGGCCCAGTTTCTCT
60406883 TACTTTGGCCC-GTTTCTC
1 TACTTTGGCCCAGTTTCTC
60406901 ATTCCTTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.08, C:0.32, G:0.13, T:0.47
Consensus pattern (20 bp):
TACTTTGGCCCAGTTTCTCT
Found at i:60408014 original size:18 final size:18
Alignment explanation
Indices: 60407993--60408059 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 18
60407983 AATCGGTTAA
*
60407993 TCAGTAGCAATCATTTAT
1 TCAGTAGCAGTCATTTAT
* * *
60408011 TCAGTATCAGCCGTTTAT
1 TCAGTAGCAGTCATTTAT
* * *
60408029 TCAGTAACGGTCAATTAT
1 TCAGTAGCAGTCATTTAT
*
60408047 TCAGTAGCGGTCA
1 TCAGTAGCAGTCA
60408060 GTCTTTAATA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (18 bp):
TCAGTAGCAGTCATTTAT
Found at i:60409171 original size:33 final size:33
Alignment explanation
Indices: 60409119--60409199 Score: 128
Period size: 33 Copynumber: 2.4 Consensus size: 33
60409109 TTCTTTTTCC
*
60409119 TTCTTTCCTTCCC-TTGTTTCGTCCCTGCTCTCTG
1 TTCTTT-C-TCCCTTTGTTTCGTCCCTACTCTCTG
60409153 TTCTTTCTCCCTTTGTTTCGTCCCTACTCTCTG
1 TTCTTTCTCCCTTTGTTTCGTCCCTACTCTCTG
60409186 TTCTTTCTCCCTTT
1 TTCTTTCTCCCTTT
60409200 CTTTTTCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
32 4 0.09
33 35 0.78
34 6 0.13
ACGTcount: A:0.01, C:0.37, G:0.09, T:0.53
Consensus pattern (33 bp):
TTCTTTCTCCCTTTGTTTCGTCCCTACTCTCTG
Found at i:60415877 original size:43 final size:42
Alignment explanation
Indices: 60415813--60415927 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
60415803 TCGTACAATG
* * * * *
60415813 CCAACGTCCCAGACGTGGTCTTACATGTAATCAAATTTCGATG
1 CCAATGTCCCAGACATGGTCTTACACGTAATCAAA-TACGATA
* * *
60415856 CCACTGTCCTAGACA-GAGTCTTACACGAAATCAAATACGATA
1 CCAATGTCCCAGACATG-GTCTTACACGTAATCAAATACGATA
60415898 CCAATGTCCCAGACATGGTCTTACACGTAA
1 CCAATGTCCCAGACATGGTCTTACACGTAA
60415928 ACCATAAGTC
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
42 31 0.53
43 28 0.47
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGTAATCAAATACGATA
Found at i:60420447 original size:18 final size:18
Alignment explanation
Indices: 60420421--60420464 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
60420411 TTCGATGTAA
60420421 GGCACATGGCCGTGTCCT
1 GGCACATGGCCGTGTCCT
*
60420439 GGTACATGGCCGTGTCCT
1 GGCACATGGCCGTGTCCT
60420457 GGCACATG
1 GGCACATG
60420465 TCCTTACCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.30, G:0.34, T:0.23
Consensus pattern (18 bp):
GGCACATGGCCGTGTCCT
Found at i:60421202 original size:24 final size:24
Alignment explanation
Indices: 60421164--60421214 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
60421154 CGAGCACTAA
60421164 TAAAACAGAGAAAAGAAAACCTAG
1 TAAAACAGAGAAAAGAAAACCTAG
* * *
60421188 TAAAACTGAGTAAAGAAAATCTAG
1 TAAAACAGAGAAAAGAAAACCTAG
60421212 TAA
1 TAA
60421215 GCATTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.59, C:0.10, G:0.16, T:0.16
Consensus pattern (24 bp):
TAAAACAGAGAAAAGAAAACCTAG
Found at i:60423451 original size:13 final size:13
Alignment explanation
Indices: 60423435--60423460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60423425 TTATTTACCG
60423435 AAATTATTATAAT
1 AAATTATTATAAT
60423448 AAATTATTATAAT
1 AAATTATTATAAT
60423461 TATGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:60427207 original size:20 final size:21
Alignment explanation
Indices: 60427182--60427222 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
60427172 ATTATTTTTT
60427182 AAATTG-AAAAATATTTATAC
1 AAATTGAAAAAATATTTATAC
60427202 AAATTGAAAAAATATTTATAC
1 AAATTGAAAAAATATTTATAC
60427223 TTTGAGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATTGAAAAAATATTTATAC
Found at i:60432675 original size:50 final size:49
Alignment explanation
Indices: 60432552--60432775 Score: 263
Period size: 49 Copynumber: 4.5 Consensus size: 49
60432542 TGAGGTCATG
*
60432552 TGTGTAGTACTAAGTGCAGGCTACTAC-CTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGC-GTACCGGATAATTGGTCACA
* * * *
60432601 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-TT-GGTCACA
* * * ** *
60432652 T-TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT-GGTCACA
* * *
60432701 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCACA
*
60432750 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
60432776 TGCATACTAG
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
49 76 0.50
50 70 0.46
51 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCACA
Found at i:60436097 original size:39 final size:39
Alignment explanation
Indices: 60435998--60436350 Score: 500
Period size: 39 Copynumber: 9.1 Consensus size: 39
60435988 CGAATACACG
* * * *
60435998 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
* * * ** * *
60436038 ACACCAGCACGAATGCTCTTCGAGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GACTTAGCCCGGATACA
*
60436078 T-ACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACA
*
60436116 TCACTAGCATGAATGCTCTTCGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
*
60436155 TCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
60436194 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
60436233 TCACTAGCA-GAATGCTCTTCGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
60436271 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
60436311 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
60436349 TC
1 TC
60436351 GTCGAGACCT
Statistics
Matches: 288, Mismatches: 17, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
37 8 0.03
38 48 0.17
39 154 0.53
40 78 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
Found at i:60438784 original size:40 final size:42
Alignment explanation
Indices: 60438740--60438835 Score: 106
Period size: 49 Copynumber: 2.2 Consensus size: 42
60438730 TTCACATTCA
60438740 TCACATT-A-GCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATGCCATTAGGCCTTATCACATATATATACACTT
*
60438780 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTT
1 TCACA-T--T--CA-T-GCCATTAGGCCTTATCACATATATATACACTT
60438829 TCACATT
1 TCACATT
60438836 TATTCAAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
40 5 0.11
41 1 0.02
43 1 0.02
46 2 0.04
48 1 0.02
49 36 0.78
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (42 bp):
TCACATTCATGCCATTAGGCCTTATCACATATATATACACTT
Found at i:60438791 original size:49 final size:47
Alignment explanation
Indices: 60438570--60438835 Score: 381
Period size: 47 Copynumber: 5.6 Consensus size: 47
60438560 CCCTTCGGGA
* * * *
60438570 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TTAGGC
* * *
60438617 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60438664 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60438711 CTTATCACATATATACACTTTCACATTCATCACATTAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60438758 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
60438807 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
60438836 TATTCAAATA
Statistics
Matches: 201, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 2 0.01
47 133 0.66
49 66 0.33
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:60450438 original size:40 final size:40
Alignment explanation
Indices: 60450383--60450524 Score: 227
Period size: 40 Copynumber: 3.6 Consensus size: 40
60450373 TATTCGAATG
60450383 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60450423 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
60450463 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
60450503 ATATCC-GGCTACA-TCCCGAAGG
1 ATATCCGGGCTA-AGTCCCGAAGG
60450525 TACTTGGGTT
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
39 13 0.13
40 82 0.85
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60475395 original size:27 final size:27
Alignment explanation
Indices: 60475365--60475544 Score: 234
Period size: 27 Copynumber: 6.6 Consensus size: 27
60475355 TTAGTTTACC
* *
60475365 AAATCACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
60475392 AAATTGCCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
60475419 AAATTACCAAAATACCCCTGGGTTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
60475447 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
60475474 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
60475501 AAATTACCAAAATACCCTTAGTTTGCA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
60475528 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
60475545 TTGAGTTGTA
Statistics
Matches: 133, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
27 108 0.81
28 25 0.19
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:60475507 original size:82 final size:81
Alignment explanation
Indices: 60475365--60475544 Score: 234
Period size: 82 Copynumber: 2.2 Consensus size: 81
60475355 TTAGTTTACC
* * * * *
60475365 AAATCACCAAAATACCTCTGGTTTGTAAAATTGCCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
* *
60475430 ATACCCCTGGGTTTGTA
66 ATA-CCCTGAGTTTGCA
***
60475447 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
*
60475512 ATACCCTTAGTTTGCA
66 ATACCCTGAGTTTGCA
**
60475528 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
60475545 TTGAGTTGTA
Statistics
Matches: 85, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
81 25 0.29
82 60 0.71
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
ATACCCTGAGTTTGCA
Found at i:60475545 original size:27 final size:27
Alignment explanation
Indices: 60475365--60475599 Score: 233
Period size: 27 Copynumber: 8.7 Consensus size: 27
60475355 TTAGTTTACC
*
60475365 AAATCACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
* **
60475392 AAATTGCCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
60475419 AAATTACCAAAATACCCCTGGGTTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTGTA
*
60475447 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
60475474 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
60475501 AAATTACCAAAATACCCTTAGTTTGCA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
60475528 AAATTACTGAAATACCCTTGAG-TTGTA
1 AAATTACCAAAATACCCTTG-GTTTGTA
* *** * **
60475555 AATTTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
60475582 AAATTA-CAAAAGTACCCT
1 AAATTACCAAAA-TACCCT
60475600 CAATTTACAA
Statistics
Matches: 175, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.02
27 144 0.82
28 28 0.16
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:60475568 original size:81 final size:81
Alignment explanation
Indices: 60475418--60475655 Score: 221
Period size: 81 Copynumber: 2.9 Consensus size: 81
60475408 CTTGGTTTAC
** * ** * **
60475418 AAAATTACCAAAATACCCCTGGGTTTGTAAAATTACCAAAATACCCCTG-GTTTGTAAAATTACC
1 AAAATTACCAAAATA-CCCTCAGTTTGCAAAATTACTGAAATACCCTTGAG-TTGTAAAATTATT
* *
60475482 AAAATACCCCTGATTTGT
64 GAAATACCCCTGACTTGT
* * *
60475500 GAAATTACCAAAATACCCTTAGTTTGCAAAATTACTGAAATACCCTTGAGTTGTAAATTTATTGA
1 AAAATTACCAAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTTGAGTTGTAAAATTATTGA
60475565 AATA-CCCTCGACTTGT
66 AATACCCCT-GACTTGT
* * *** * * **
60475581 AAAATTA-CAAAAGTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTATTG
1 AAAATTACCAAAA-TACCCTCAGTTTGCAAAATTACTGAAATACCCTTGAGTTGTAAAATTATTG
60475645 AAATACCCCTG
65 AAATACCCCTG
60475656 TAAGGTAGAA
Statistics
Matches: 128, Mismatches: 24, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
80 9 0.07
81 100 0.78
82 19 0.15
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTTGAGTTGTAAAATTATTGA
AATACCCCTGACTTGT
Found at i:60475651 original size:27 final size:27
Alignment explanation
Indices: 60475526--60475652 Score: 103
Period size: 27 Copynumber: 4.7 Consensus size: 27
60475516 CCTTAGTTTG
* * *
60475526 CAAAATTACTGAAATACCCTTGAGTTG
1 CAAAATTACTGAAATACCCTCGATTTA
* * * * *
60475553 TAAATTTATTGAAATACCCTCGACTTG
1 CAAAATTACTGAAATACCCTCGATTTA
* * *
60475580 TAAAATTAC-AAAAGTACCCTCAATTTA
1 CAAAATTACTGAAA-TACCCTCGATTTA
***
60475607 CAAAATTACTGTTTTACCCTCGATTTA
1 CAAAATTACTGAAATACCCTCGATTTA
*
60475634 CAAAATTATTGAAATACCC
1 CAAAATTACTGAAATACCC
60475653 CTGTAAGGTA
Statistics
Matches: 77, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 3 0.04
27 74 0.96
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
CAAAATTACTGAAATACCCTCGATTTA
Found at i:60475667 original size:27 final size:27
Alignment explanation
Indices: 60475644--60476099 Score: 624
Period size: 27 Copynumber: 16.9 Consensus size: 27
60475634 CAAAATTATT
* *
60475644 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
60475671 GAAATACCCTTGTAGCGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
60475698 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
60475725 GAGATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
60475752 AAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAATTACC
60475779 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * **
60475806 GAAATACCCCTGTAGAGTAGAATTATT
1 GAAATACCCTTGTAGGGTAGAATTACC
60475833 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
60475860 AAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
60475887 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
60475914 AAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
60475941 GAAATACCCTTGTAGGGTAGAAATCCC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
60475968 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
*
60475995 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
60476022 GAAATACCTTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
60476049 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
** * *
60476076 GGGATACCCTTGTGGGGTAAAATT
1 GAAATACCCTTGTAGGGTAGAATT
60476100 TCCATTTTGC
Statistics
Matches: 377, Mismatches: 52, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 377 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:60476563 original size:22 final size:22
Alignment explanation
Indices: 60476530--60476594 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
60476520 TTAAAGCCTT
*
60476530 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
60476552 CT-ATATATGGCTTTGTGCCAAC
1 CTGAT-TATGGCTTTGTGCCAAC
*
60476574 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
60476595 ACGTATTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.05
22 35 0.90
23 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:60476771 original size:25 final size:26
Alignment explanation
Indices: 60476743--60476827 Score: 73
Period size: 27 Copynumber: 3.3 Consensus size: 26
60476733 TGCCACGTAT
* *
60476743 TCTGTT-AAGTGGCTTTGCCACATTA
1 TCTGTTCAAGTGGCTCTGCCACAATA
**
60476768 TCTGTTCTGGTGGCTCTGCCACAATA
1 TCTGTTCAAGTGGCTCTGCCACAATA
** * *
60476794 TCTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCAAGTGGCTCTGCCACAATA
*
60476821 TATGTTC
1 TCTGTTC
60476828 TGGAAGCCAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 6 0.12
26 22 0.43
27 23 0.45
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (26 bp):
TCTGTTCAAGTGGCTCTGCCACAATA
Found at i:60476787 original size:26 final size:26
Alignment explanation
Indices: 60476751--60476830 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
60476741 ATTCTGTTAA
* *
60476751 GTGGCTTTGCCACATTATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
60476777 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * *
60476804 GTGACTCTGTCACAATATATGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
60476830 G
1 G
60476831 AAGCCATACT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.52
27 23 0.48
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:60476811 original size:27 final size:26
Alignment explanation
Indices: 60476758--60476830 Score: 101
Period size: 27 Copynumber: 2.8 Consensus size: 26
60476748 TAAGTGGCTT
* *
60476758 TGCCACATTATCTGTTCTGGTGGCTC
1 TGCCACAATATCTGTTCTGGTGACTC
60476784 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
* *
60476811 TGTCACAATATATGTTCTGG
1 TGCCACAATATCTGTTCTGG
60476831 AAGCCATACT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.45
27 23 0.55
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:60476974 original size:19 final size:19
Alignment explanation
Indices: 60476950--60477021 Score: 72
Period size: 19 Copynumber: 3.5 Consensus size: 19
60476940 CATTCACATT
60476950 CTGATTCTGTTACTTGATA
1 CTGATTCTGTTACTTGATA
*
60476969 CTGATTCTGATTCTGTCACTTGATT
1 CTGATTCTG----T-T-ACTTGATA
*
60476994 CTGATTCTGTTACCTGATA
1 CTGATTCTGTTACTTGATA
60477013 CTGATTCTG
1 CTGATTCTG
60477022 ATTCTGTCAC
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 24 0.55
20 1 0.02
21 1 0.02
23 1 0.02
24 1 0.02
25 16 0.36
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (19 bp):
CTGATTCTGTTACTTGATA
Found at i:60477012 original size:44 final size:44
Alignment explanation
Indices: 60476947--60477043 Score: 167
Period size: 44 Copynumber: 2.2 Consensus size: 44
60476937 TTGCATTCAC
* *
60476947 ATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTCACTTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTG
60476991 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTG
*
60477035 GTTCTGATT
1 ATTCTGATT
60477044 ATAATTCTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (44 bp):
ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTG
Found at i:60477033 original size:25 final size:25
Alignment explanation
Indices: 60476947--60477043 Score: 107
Period size: 25 Copynumber: 4.1 Consensus size: 25
60476937 TTGCATTCAC
* *
60476947 ATTCTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGTCACCTGATACTG
60476972 ATTCTGATTCTGTCA-C---T--TG
1 ATTCTGATTCTGTCACCTGATACTG
*
60476991 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTGATACTG
* *
60477016 ATTCTGATTCTGTCACCTGGTTCTG
1 ATTCTGATTCTGTCACCTGATACTG
60477041 ATT
1 ATT
60477044 ATAATTCTCA
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
19 16 0.27
20 1 0.02
21 1 0.02
23 1 0.02
25 41 0.68
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTGATACTG
Found at i:60477039 original size:19 final size:19
Alignment explanation
Indices: 60476973--60477043 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 19
60476963 TTGATACTGA
* *
60476973 TTCTGATTCTGTCACTTGA
1 TTCTGATTCTGTCACCTGG
*
60476992 TTCTGATTCTGTTACCTGATACTG
1 TTCTGATTCTGTCACCTG-----G
60477016 ATTCTGATTCTGTCACCTGG
1 -TTCTGATTCTGTCACCTGG
60477036 TTCTGATT
1 TTCTGATT
60477044 ATAATTCTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
19 24 0.57
20 1 0.02
25 17 0.40
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.46
Consensus pattern (19 bp):
TTCTGATTCTGTCACCTGG
Found at i:60477050 original size:25 final size:25
Alignment explanation
Indices: 60476997--60477051 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
60476987 CTTGATTCTG
* * *
60476997 ATTCTGTTACCTGATACTGATTCTG
1 ATTCTGTCACCTGATACTGATTATA
* *
60477022 ATTCTGTCACCTGGTTCTGATTATA
1 ATTCTGTCACCTGATACTGATTATA
60477047 ATTCT
1 ATTCT
60477052 CATTTTGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTCTGTCACCTGATACTGATTATA
Found at i:60482968 original size:7 final size:7
Alignment explanation
Indices: 60482956--60482980 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60482946 AAGAGAGAAT
60482956 ATGAGGG
1 ATGAGGG
60482963 ATGAGGG
1 ATGAGGG
60482970 ATGAGGG
1 ATGAGGG
60482977 ATGA
1 ATGA
60482981 TTAGGAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.52, T:0.16
Consensus pattern (7 bp):
ATGAGGG
Found at i:60483474 original size:17 final size:17
Alignment explanation
Indices: 60483421--60483475 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
60483411 TTTAAAATGA
*
60483421 ATTATTAAATATAATTTT
1 ATTATTAAATAT-GTTTT
**
60483439 A-TATTTTAT-TGTTTT
1 ATTATTAAATATGTTTT
60483454 -TTATTAAATATGTTTT
1 ATTATTAAATATGTTTT
60483470 ATTATT
1 ATTATT
60483476 TAATTTAATC
Statistics
Matches: 29, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
15 10 0.34
16 7 0.24
17 11 0.38
18 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (17 bp):
ATTATTAAATATGTTTT
Found at i:60487014 original size:20 final size:19
Alignment explanation
Indices: 60486969--60487016 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
60486959 ATTTTTGGAA
* *
60486969 AATTAATTTTAAAGTAATT
1 AATTAATTTTAAAGAAAAT
* *
60486988 AAATAATTATTAATGAAAAT
1 AATTAATT-TTAAAGAAAAT
60487008 AATTAATTT
1 AATTAATTT
60487017 GGGTCGAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AATTAATTTTAAAGAAAAT
Found at i:60498115 original size:39 final size:39
Alignment explanation
Indices: 60498072--60498158 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
60498062 CCGGCAATTT
60498072 GCCTGCTAGGTATAAA-CTCGAACTTAACACCGGCACGAG
1 GCCTGCTAGGTATAAACCT-GAACTTAACACCGGCACGAG
* *
60498111 GCCTGCTAGGTATAAACCTGAATTTACCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
*
60498150 TCCTGCTAG
1 GCCTGCTAG
60498159 ATATTAAGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 42 0.95
40 2 0.05
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.21
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
Found at i:60500635 original size:15 final size:15
Alignment explanation
Indices: 60500612--60500642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60500602 ACGGTGTATT
*
60500612 GTTGCTTGATAACAC
1 GTTGATTGATAACAC
60500627 GTTGATTGATAACAC
1 GTTGATTGATAACAC
60500642 G
1 G
60500643 ATGTGTGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (15 bp):
GTTGATTGATAACAC
Found at i:60509861 original size:39 final size:39
Alignment explanation
Indices: 60509780--60510025 Score: 370
Period size: 39 Copynumber: 6.3 Consensus size: 39
60509770 CAGGACTTTA
* * * *
60509780 AGCCCGAATATAATACCAGCAC-AAAGCCTACGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
* * * *
60509819 AGCCTGGATATAACACCGGCACGAATGCCTTCGGGGCCT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* * *
60509858 AGCCCGGATATAACACCAGCACAAATACCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
60509897 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-CTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
60509935 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
60509974 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
60510013 AGCCCGGATATAA
1 AGCCCGGATATAA
60510026 TTCTCCATTA
Statistics
Matches: 187, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 38 0.20
39 138 0.74
40 11 0.06
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:60509959 original size:116 final size:117
Alignment explanation
Indices: 60509780--60510025 Score: 370
Period size: 116 Copynumber: 2.1 Consensus size: 117
60509770 CAGGACTTTA
* * * *
60509780 AGCCCGAATATAATACCAGCACAAAGCCTACGGGACTTTAGCCTGGATATAACACCGGCACGAAT
1 AGCCCGGATATAACACCAGCACAAAGCCTACGGGACTTTAGCCCGGATATAACACCAGCACGAAT
*
60509845 GCCTTCGGGGCCTAGCCCGGATATAACACCAGCACAAATACCTTCGAGACTT
66 GCCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATACCTTCGAGACTT
* *
60509897 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-C-TTAGCCCGGATATAACACCAGCACGAA
1 AGCCCGGATATAACACCAGCAC-AAAGCCTACGGGACTTTAGCCCGGATATAACACCAGCACGAA
* * * *
60509960 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
65 TGCCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATACCTTCGAGACTT
60510013 AGCCCGGATATAA
1 AGCCCGGATATAA
60510026 TTCTCCATTA
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
116 86 0.74
117 21 0.18
118 10 0.09
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (117 bp):
AGCCCGGATATAACACCAGCACAAAGCCTACGGGACTTTAGCCCGGATATAACACCAGCACGAAT
GCCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATACCTTCGAGACTT
Found at i:60509974 original size:77 final size:76
Alignment explanation
Indices: 60509780--60510025 Score: 366
Period size: 77 Copynumber: 3.2 Consensus size: 76
60509770 CAGGACTTTA
* * * * * *
60509780 AGCCCGAATATAATACCAGCACAAAGCCTACGGGACTTTAGCCTGGATATAACACCGGCACGAAT
1 AGCCCGGATATAACACCAGCACAATGCCTTCGGGAC-TTAGCCCGGATATAACACCAGCACGAAT
*
60509845 GCCTTCGGGGCCT
65 GCCTTC-GGGCTT
* *
60509858 AGCCCGGATATAACACCAGCACAAATACCTTCGAGACTTAGCCCGGATATAACACCAGCACGAAT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
60509923 GCCTTCGGGCTT
65 GCCTTCGGGCTT
60509935 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
60510000 GCCTTCGGGACTT
65 GCCTTCGGG-CTT
60510013 AGCCCGGATATAA
1 AGCCCGGATATAA
60510026 TTCTCCATTA
Statistics
Matches: 154, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 76 0.49
78 68 0.44
79 10 0.06
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (76 bp):
AGCCCGGATATAACACCAGCACAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
CCTTCGGGCTT
Found at i:60515978 original size:39 final size:39
Alignment explanation
Indices: 60515892--60516212 Score: 447
Period size: 39 Copynumber: 8.3 Consensus size: 39
60515882 GGACTTTAAG
* * *
60515892 CCCGAATATAATACCAGCAC-AAAGCCTACGGGACTTTA-C
1 CCCG-ATATAACACCAGCACGAATGCCTTCGGGAC-TTAGC
60515931 CCCGGATATAACACCAGCACGAATGCCTTCGAGG-CTTAGC
1 CCC-GATATAACACCAGCACGAATGCCTTCG-GGACTTAGC
*
60515971 CCCGATATAACACCAGCACGAATGCCTTCGGGGCTTAG-
1 CCCGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
60516009 CCCGAATATAACACCAGCACGAATGCCTTTGGGACTTAGC
1 CCCG-ATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
60516049 CCGGATATAACACCAGCACGAATGCCTTCGGG-CTTAGC
1 CCCGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
60516087 CCGGATATAACACCAGCACGAATGCCTTCGGG-CTTAGC
1 CCCGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* *
60516125 CCGGATATAACACCAACACGAATGCCTTCGGGACTTAGC
1 CCCGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* *
60516164 CCGGATATAACACCAGCATGAATGCCTTCGGGACTTAGC
1 CCCGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
60516203 CCAGATATAA
1 CCCGATATAA
60516213 TTCTCCATTA
Statistics
Matches: 263, Mismatches: 11, Indels: 16
0.91 0.04 0.06
Matches are distributed among these distances:
38 81 0.31
39 163 0.62
40 17 0.06
41 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (39 bp):
CCCGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
Found at i:60516146 original size:154 final size:156
Alignment explanation
Indices: 60515880--60516212 Score: 510
Period size: 154 Copynumber: 2.1 Consensus size: 156
60515870 ACAAAGGATG
* *
60515880 CGGGACTTTAAGCCCGAATATAATACCAGCACAAAGCCTACGGGACTTTACCCCGGATATAACAC
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACAAAGCCTACGGGACTTTACCCCGGATATAACAC
* *
60515945 CAGCACGAATGCCTTCGAGGCTTAGCCCCGATATAACACCAGCACGAATGCCTTCGGGGCTTAGC
64 CAGCACGAATGCCTTCGAGGCTTAGCCCCGATATAACACCAACACGAATGCCTTCGGGACTTAGC
60516010 CCGAATATAACACCAGCACGAATGCCTT
129 CCGAATATAACACCAGCACGAATGCCTT
* * * *
60516038 TGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGG-C-TTAGCCCGGATATAACACC
1 CGGGACTTAGCCCGGATATAACACCAGCAC-AAAGCCTACGGGACTTTACCCCGGATATAACACC
*
60516101 AGCACGAATGCCTTCG-GGCTTAGCCCGGATATAACACCAACACGAATGCCTTCGGGACTTAGCC
65 AGCACGAATGCCTTCGAGGCTTAGCCCCGATATAACACCAACACGAATGCCTTCGGGACTTAGCC
* *
60516165 CGGATATAACACCAGCATGAATGCCTT
130 CGAATATAACACCAGCACGAATGCCTT
*
60516192 CGGGACTTAGCCCAGATATAA
1 CGGGACTTAGCCCGGATATAA
60516213 TTCTCCATTA
Statistics
Matches: 161, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
154 89 0.55
155 34 0.21
156 21 0.13
157 12 0.07
158 5 0.03
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (156 bp):
CGGGACTTAGCCCGGATATAACACCAGCACAAAGCCTACGGGACTTTACCCCGGATATAACACCA
GCACGAATGCCTTCGAGGCTTAGCCCCGATATAACACCAACACGAATGCCTTCGGGACTTAGCCC
GAATATAACACCAGCACGAATGCCTT
Found at i:60518922 original size:18 final size:17
Alignment explanation
Indices: 60518891--60518924 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60518881 TTCAACATAT
*
60518891 AAATAAATATAAAAATA
1 AAATAAATAAAAAAATA
60518908 AAATAAAATAAAAAAAT
1 AAAT-AAATAAAAAAAT
60518925 GTAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAATAAAAAAATA
Found at i:60522925 original size:14 final size:13
Alignment explanation
Indices: 60522894--60522932 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
60522884 CATCCTGGAA
60522894 AATTAA-AACAAG
1 AATTAAGAACAAG
*
60522906 AATTAAGAACACAT
1 AATTAAGAACA-AG
60522920 AATTAAGAACAAG
1 AATTAAGAACAAG
60522933 TCAAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (13 bp):
AATTAAGAACAAG
Found at i:60526301 original size:26 final size:25
Alignment explanation
Indices: 60526229--60526346 Score: 114
Period size: 25 Copynumber: 4.7 Consensus size: 25
60526219 TTATGTACAT
*
60526229 GTATGCTCAT-ACGAGCTGTGAATCG
1 GTATGCTC-TCACGAGCTGTAAATCG
* * *
60526254 ATATGCTCTCTCGAGCTATAAATCG
1 GTATGCTCTCACGAGCTGTAAATCG
* *
60526279 GTATGATTCTCACGAGTTGTAAATCG
1 GTATG-CTCTCACGAGCTGTAAATCG
* *
60526305 GTATGCTCTCATGAGCTGTAAACCG
1 GTATGCTCTCACGAGCTGTAAATCG
*
60526330 GTAAGCTCGT-ACGAGCT
1 GTATGCTC-TCACGAGCT
60526347 ATGGTTTTTC
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
24 1 0.01
25 52 0.69
26 22 0.29
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTGTAAATCG
Found at i:60529827 original size:23 final size:23
Alignment explanation
Indices: 60529808--60529865 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
60529798 ATTGCAGCGT
*
60529808 AGCTGCTAATAGTAACGCAGCAA
1 AGCTACTAATAGTAACGCAGCAA
**
60529831 AGCTACTAATAGTAATACAGCAA
1 AGCTACTAATAGTAACGCAGCAA
*
60529854 AGCTTCTAATAG
1 AGCTACTAATAG
60529866 CGGTAAACGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.22
Consensus pattern (23 bp):
AGCTACTAATAGTAACGCAGCAA
Found at i:60549079 original size:21 final size:21
Alignment explanation
Indices: 60549029--60549079 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
60549019 TTATGTTAAT
*
60549029 TAATAATATTTATATTTATGA
1 TAATATTATTTATATTTATGA
*
60549050 TAATATTATTTATCTTTATGA
1 TAATATTATTTATATTTATGA
*
60549071 TAATTTTAT
1 TAATATTAT
60549080 ATTTTTTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (21 bp):
TAATATTATTTATATTTATGA
Found at i:60549088 original size:21 final size:21
Alignment explanation
Indices: 60549034--60549088 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 21
60549024 TTAATTAATA
60549034 ATATTTATATTTATGATAATATT
1 ATATTT-T-TTTATGATAATATT
* *
60549057 AT-TTATCTTTATGATAATTTT
1 ATATT-TTTTTATGATAATATT
60549078 ATATTTTTTTA
1 ATATTTTTTTA
60549089 CATAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
21 20 0.74
22 4 0.15
23 3 0.11
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
ATATTTTTTTATGATAATATT
Found at i:60555422 original size:25 final size:25
Alignment explanation
Indices: 60555369--60555438 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
60555359 GATCTCTCTT
* *
60555369 GAGCCATATAACGGGAAGCT-TATGT
1 GAGCCAT-TAACGGGAAGCTCCATGA
60555394 GAGCCATGTAACGGGAAGCTCCA-GA
1 GAGCCAT-TAACGGGAAGCTCCATGA
* *
60555419 GAGCAATTAATGGGAAGCTC
1 GAGCCATTAACGGGAAGCTC
60555439 ATACTAGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 12 0.31
25 26 0.67
26 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.19
Consensus pattern (25 bp):
GAGCCATTAACGGGAAGCTCCATGA
Found at i:60555457 original size:24 final size:24
Alignment explanation
Indices: 60555369--60555476 Score: 60
Period size: 24 Copynumber: 4.4 Consensus size: 24
60555359 GATCTCTCTT
* * * *
60555369 GAGCCATATAACGGGAAGCTTATGT
1 GAGCCA-ATATCGGGAAGCTCAAGC
* * * *
60555394 GAGCCATGTAACGGGAAGCTCCAGA
1 GAGCCA-ATATCGGGAAGCTCAAGC
60555419 GAG-CAATTAAT-GGGAAGCTCATA-C
1 GAGCCAA-T-ATCGGGAAGCTCA-AGC
* *
60555443 TAGCCAATATCGGGAAGTTCAAGC
1 GAGCCAATATCGGGAAGCTCAAGC
60555467 GAGCCAATAT
1 GAGCCAATAT
60555477 AGAAAAGTTC
Statistics
Matches: 65, Mismatches: 12, Indels: 13
0.72 0.13 0.14
Matches are distributed among these distances:
23 3 0.05
24 34 0.52
25 28 0.43
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.19
Consensus pattern (24 bp):
GAGCCAATATCGGGAAGCTCAAGC
Found at i:60563854 original size:43 final size:43
Alignment explanation
Indices: 60563807--60563959 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 43
60563797 TCCCAGATGT
* * *
60563807 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGACAG
* *
60563850 GGTCTTACACGAAATCAAATAT-GATGCCAATGTCCAAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGACAG
* * *
60563892 GGTCTTACACGTAAATCTCAA-ATCAATGCCAATGTCCCAGA-TG
1 GGTCTTACACG-AAATC-AAATATCGATGCCAATGTCCCAGACAG
* *
60563935 TGGTCTTACATGAAATCACATATCG
1 -GGTCTTACACGAAATCAAATATCG
60563960 GAATCCTATG
Statistics
Matches: 91, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.32
43 35 0.38
44 27 0.30
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGACAG
Found at i:60563890 original size:42 final size:42
Alignment explanation
Indices: 60563807--60563957 Score: 155
Period size: 42 Copynumber: 3.5 Consensus size: 42
60563797 TCCCAGATGT
* * *
60563807 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAATCAAATAT-GATGCCAATGTCCCAGACAG
* *
60563850 GGTCTTACACGAAATCAAATATGATGCCAATGTCCAAGACAT
1 GGTCTTACACGAAATCAAATATGATGCCAATGTCCCAGACAG
*
60563892 GGTCTTACACGTAAATCTCAAATCA--ATGCCAATGTCCCAGA-TG
1 GGTCTTACACG-AAA--TCAAAT-ATGATGCCAATGTCCCAGACAG
* *
60563935 TGGTCTTACATGAAATCACATAT
1 -GGTCTTACACGAAATCAAATAT
60563958 CGGAATCCTA
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 5 0.05
42 28 0.30
43 26 0.28
44 25 0.27
45 6 0.07
46 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATGATGCCAATGTCCCAGACAG
Found at i:60567259 original size:40 final size:40
Alignment explanation
Indices: 60567222--60567486 Score: 324
Period size: 40 Copynumber: 6.7 Consensus size: 40
60567212 GCTACTCGTT
*
60567222 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
60567262 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
60567302 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
60567342 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *
60567382 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
60567421 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
60567462 CAAA-GCCTTCGGGACTTACCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60567487 CATCATTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 35 0.18
40 144 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:60567334 original size:80 final size:81
Alignment explanation
Indices: 60567189--60567486 Score: 326
Period size: 80 Copynumber: 3.8 Consensus size: 81
60567179 AAATCACGTA
* * ** *
60567189 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGGGATCTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-
60567250 TAGTAACTCGCACAAATG
64 TAGTAACTCGCACAAATG
* *
60567268 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGGATTTA
1 CCTTCGGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
60567332 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
** * *
60567348 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGAATTA
1 CCTTCGGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
*
60567411 GTATCTCGCACAAATG
66 GTAACTCGCACAAATG
** * * * * * *
60567427 CCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCACAAA-GCCTTCGGGACTTACCCCGGA
1 CCTTCGGGATCTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
60567487 CATCATTCAA
Statistics
Matches: 191, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
79 77 0.40
80 112 0.59
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (81 bp):
CCTTCGGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
GTAACTCGCACAAATG
Found at i:60572384 original size:42 final size:41
Alignment explanation
Indices: 60572278--60572384 Score: 101
Period size: 43 Copynumber: 2.5 Consensus size: 41
60572268 GCGTGAGACA
* *
60572278 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
* *
60572320 TACGTATAAGACCATGTTTGGGACATC-GGCATCGTATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATT
* *
60572363 TCGTGTAAGACCCTATCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
60572385 TAGAGGTATC
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
42 18 0.34
43 31 0.58
44 3 0.06
45 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:60583944 original size:49 final size:47
Alignment explanation
Indices: 60583805--60584172 Score: 639
Period size: 47 Copynumber: 7.7 Consensus size: 47
60583795 TTAGGATTCT
*
60583805 ATGTGATGGATGTGAACA-TGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
60583852 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
60583899 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
60583948 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
60583997 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
60584044 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
60584091 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
60584138 ACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60584173 TCCCGAAGGG
Statistics
Matches: 311, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 214 0.69
49 96 0.31
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:60586523 original size:45 final size:45
Alignment explanation
Indices: 60586473--60586587 Score: 140
Period size: 45 Copynumber: 2.6 Consensus size: 45
60586463 AAATACGAGT
* * *
60586473 AAGACCATAGCTGAAAGATACTATGCCATCATGAATCAAATGAGC
1 AAGACCATAGCTGAAAGACACTATGACATCACGAATCAAATGAGC
* * * * * *
60586518 AAGACCAAACCTGAAAGGCACTATGACATCACGATTCAAATGTGT
1 AAGACCATAGCTGAAAGACACTATGACATCACGAATCAAATGAGC
*
60586563 AAGAACATAGCTGAAAGACACTATG
1 AAGACCATAGCTGAAAGACACTATG
60586588 GCACTATACC
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (45 bp):
AAGACCATAGCTGAAAGACACTATGACATCACGAATCAAATGAGC
Found at i:60596328 original size:47 final size:47
Alignment explanation
Indices: 60596269--60596460 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
60596259 GAAATGATAG
*
60596269 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60596316 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60596363 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
60596410 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60596457 TAAG
1 TAAG
60596461 TCCCGAAGGG
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60596635 original size:37 final size:37
Alignment explanation
Indices: 60596579--60596656 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
60596569 CCGAGCTCTA
* *
60596579 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
60596616 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60596653 AAGA
1 AAGA
60596657 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60598561 original size:43 final size:43
Alignment explanation
Indices: 60598513--60598615 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
60598503 TTGGTTTTCA
60598513 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60598556 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60598599 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
60598616 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:60598632 original size:29 final size:29
Alignment explanation
Indices: 60598597--60598670 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
60598587 GTTGTGAGAT
* *
60598597 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
60598626 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60598655 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60598671 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60599103 original size:39 final size:39
Alignment explanation
Indices: 60599060--60599213 Score: 193
Period size: 39 Copynumber: 3.9 Consensus size: 39
60599050 GAGTTACTAA
*
60599060 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
*
60599099 ATCCGGGCTAAGTCCGAAGAGCATTCAT-ATAGTGATGT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
* * *
60599137 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAATGATAT
1 ATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
60599177 ATCCGTGCTAAATCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGA
60599214 CGTGTATTCG
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 20 0.20
39 44 0.44
40 35 0.35
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
Found at i:60603492 original size:47 final size:46
Alignment explanation
Indices: 60603367--60603555 Score: 272
Period size: 47 Copynumber: 4.1 Consensus size: 46
60603357 GAAATGATAG
*
60603367 TAAGG-CTAATGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60603412 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60603458 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
60603505 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60603552 TAAG
1 TAAG
60603556 TCCCGAAGGG
Statistics
Matches: 130, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
45 5 0.04
46 50 0.38
47 75 0.58
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (46 bp):
TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60606309 original size:79 final size:81
Alignment explanation
Indices: 60606207--60606391 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
60606197 GCTCCTCGTT
* *
60606207 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
60606270 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
60606287 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
60606351 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
60606367 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60606392 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:60606391 original size:40 final size:40
Alignment explanation
Indices: 60606207--60606391 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
60606197 GCTCCTCGTT
* *
60606207 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
60606247 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
60606287 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
60606326 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
60606367 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60606392 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:60608625 original size:28 final size:28
Alignment explanation
Indices: 60608584--60608658 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
60608574 ATACATGCAC
* * **
60608584 ATGGTCCACTAGGCCCAATCTCATTCAT
1 ATGGCCCATTAGGCCCAATCAAATTCAT
60608612 ATGGCCCATTAGGCCCAAATCAAATTCAT
1 ATGGCCCATTAGGCCC-AATCAAATTCAT
** *
60608641 ACAGCCCGTTAGGCCCAA
1 ATGGCCCATTAGGCCCAA
60608659 ACCACATTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 16 0.41
29 23 0.59
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (28 bp):
ATGGCCCATTAGGCCCAATCAAATTCAT
Found at i:60608647 original size:29 final size:29
Alignment explanation
Indices: 60608593--60608670 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
60608583 CATGGTCCAC
* **
60608593 TAGGCCC-AATCTCATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATACAGCCCAT
* *
60608621 TAGGCCCAAATCAAATTCATACAGCCCGT
1 TAGGCCCAAATCACATTCATACAGCCCAT
*
60608650 TAGGCCCAAACCACATTCATA
1 TAGGCCCAAATCACATTCATA
60608671 TACACGCTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 7 0.17
29 35 0.83
ACGTcount: A:0.32, C:0.32, G:0.13, T:0.23
Consensus pattern (29 bp):
TAGGCCCAAATCACATTCATACAGCCCAT
Found at i:60612720 original size:20 final size:20
Alignment explanation
Indices: 60612695--60612740 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
60612685 ATTCTAATAT
60612695 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60612715 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60612735 ACATGA
1 ACATGA
60612741 GGTATTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60612849 original size:25 final size:25
Alignment explanation
Indices: 60612789--60612872 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
60612779 AGGAAGTGCA
**
60612789 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTTTC
60612814 GAAAAGGGCTTTTGCCCCAGTTTTTC
1 -AAAAGGGCTTTTGCCCCAGTTTTTC
* *
60612840 AAAAGGGC-TTTGCCCTAGTTATT-
1 AAAAGGGCTTTTGCCCCAGTTTTTC
60612863 AAAAGAGGCT
1 AAAAG-GGCT
60612873 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 5 0.10
24 16 0.31
25 8 0.15
26 23 0.44
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTTTC
Found at i:60637716 original size:30 final size:30
Alignment explanation
Indices: 60637682--60637741 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60637672 TTCCCGAGCC
*
60637682 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
60637712 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
60637742 CATATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:60639974 original size:12 final size:12
Alignment explanation
Indices: 60639959--60639984 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60639949 AAATTCAAAA
60639959 TCATCAGAAGAG
1 TCATCAGAAGAG
60639971 TCATCAGAAGAG
1 TCATCAGAAGAG
60639983 TC
1 TC
60639985 TGAATTCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (12 bp):
TCATCAGAAGAG
Found at i:60646700 original size:30 final size:30
Alignment explanation
Indices: 60646666--60646725 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
60646656 CTTTAATACG
*
60646666 AACTTTGGAAAAATTACATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
60646696 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
60646726 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:60652070 original size:49 final size:49
Alignment explanation
Indices: 60652014--60652424 Score: 599
Period size: 47 Copynumber: 8.6 Consensus size: 49
60652004 TATTTGAATA
60652014 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60652063 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
60652112 AATGTGAAAGTGTATA-A-ATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
60652159 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
60652208 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
60652257 AATGTGAAAG-G-GTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
60652304 AATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
60652351 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
60652398 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
60652425 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 22, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 180 0.54
48 5 0.01
49 150 0.45
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:60652278 original size:145 final size:145
Alignment explanation
Indices: 60652014--60652424 Score: 659
Period size: 145 Copynumber: 2.9 Consensus size: 145
60652004 TATTTGAATA
*
60652014 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
60652079 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGA
*
60652144 ATGGCCAATGTGATG
131 ATAGCCAATGTGATG
60652159 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
60652224 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGGTATATATGTGATAAGGCCTA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGA
*
60652289 ATAGCCGATGTGATG
131 ATAGCCAATGTGATG
* *
60652304 AATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * * * * *
60652365 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
60652425 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
141 53 0.21
143 45 0.18
145 151 0.61
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGA
ATAGCCAATGTGATG
Found at i:60658532 original size:30 final size:30
Alignment explanation
Indices: 60658498--60658557 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60658488 CTTTAATACG
* *
60658498 AACTTTGGAAAAATTACATTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
60658528 AACTTTTGTATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
60658558 GGCTAGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:60677563 original size:57 final size:57
Alignment explanation
Indices: 60677475--60677590 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
60677465 ATTTAGAGGA
* *
60677475 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCTATTGGGGCAAATTTTGAC
1 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGAAAATTTTGAC
60677532 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGAAAATTTTGAC
1 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGAAAATTTTGAC
60677589 AT
1 AT
60677591 CAGACCCTCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (57 bp):
ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGAAAATTTTGAC
Found at i:60679476 original size:3 final size:3
Alignment explanation
Indices: 60679468--60679506 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
60679458 GCAACGAGTT
* * *
60679468 GAA GAA GAA GAC GAA GAA GAA GAA GAA AAA TAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
60679507 TATTCCACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.28, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:60681546 original size:17 final size:17
Alignment explanation
Indices: 60681526--60681561 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
60681516 TTTGCATATT
60681526 TGTGATTTTGTGAAAAA
1 TGTGATTTTGTGAAAAA
60681543 TGTGATTTTGTGAAAAA
1 TGTGATTTTGTGAAAAA
60681560 TG
1 TG
60681562 GAATAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (17 bp):
TGTGATTTTGTGAAAAA
Found at i:60682023 original size:42 final size:43
Alignment explanation
Indices: 60681917--60682057 Score: 112
Period size: 43 Copynumber: 3.3 Consensus size: 43
60681907 ATCTGAGATA
* * *
60681917 TCATGTAAGACCGTGTCTGGGACACAGGC--C-ACGATTTAGATT
1 TCATGTAAGACCATGTCTGGGACAGAGGCATCGAC-ATTGA-ATT
* * ** *
60681959 TACGTATAAGACCATGTCTGGGACATCGGCATCG-TATCT-AATT
1 T-CATGTAAGACCATGTCTGGGACAGAGGCATCGACAT-TGAATT
* * *
60682002 TCATGTAAGACCTTGTTTGGGACAGAGGCATCGACATTGGATT
1 TCATGTAAGACCATGTCTGGGACAGAGGCATCGACATTGAATT
60682045 TCATGTAAGACCA
1 TCATGTAAGACCA
60682058 CATCCGGGAC
Statistics
Matches: 77, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
42 28 0.36
43 44 0.57
44 3 0.04
45 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TCATGTAAGACCATGTCTGGGACAGAGGCATCGACATTGAATT
Found at i:60682067 original size:85 final size:85
Alignment explanation
Indices: 60681900--60682083 Score: 185
Period size: 85 Copynumber: 2.2 Consensus size: 85
60681890 AAGGAAAGTT
* * *
60681900 GACATC-TATCTGAGATATCATGTAAGACCGTGTCTGGGACACAGGCCACGATTTAGATTTACGT
1 GACATCGTATCT-A-ATTTCATGTAAGACCGTGTCTGGGACACAGGCCACGAATTAGATTTACAT
** *
60681964 ATAAGACCATGTCTGGGACATC
64 ATAAGACCACATCCGGGACATC
* * * * *
60681986 GGCATCGTATCTAATTTCATGTAAGACCTTGTTTGGGACAGAGG-CATCGACATTGGATTT-CAT
1 GACATCGTATCTAATTTCATGTAAGACCGTGTCTGGGACACAGGCCA-CGA-ATTAGATTTACAT
* *
60682049 GTAAGACCACATCCGGGACGTC
64 ATAAGACCACATCCGGGACATC
*
60682071 GACATTGTATCTA
1 GACATCGTATCTA
60682084 TTTATGATTA
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
84 2 0.03
85 60 0.75
86 13 0.16
87 5 0.06
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (85 bp):
GACATCGTATCTAATTTCATGTAAGACCGTGTCTGGGACACAGGCCACGAATTAGATTTACATAT
AAGACCACATCCGGGACATC
Found at i:60683998 original size:11 final size:10
Alignment explanation
Indices: 60683966--60684003 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
60683956 TTATAATAAA
*
60683966 TTTTGATTAA
1 TTTTGATTAT
60683976 TTTTGATTAT
1 TTTTGATTAT
60683986 TTTTGACTTAT
1 TTTTGA-TTAT
60683997 TTTTGAT
1 TTTTGAT
60684004 AGATTCACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.21, C:0.03, G:0.11, T:0.66
Consensus pattern (10 bp):
TTTTGATTAT
Found at i:60689243 original size:30 final size:29
Alignment explanation
Indices: 60689207--60689311 Score: 120
Period size: 30 Copynumber: 3.5 Consensus size: 29
60689197 GGCCATGGCG
** *
60689207 GTGTGTCACACATGGCCAAGAAACACGCCC
1 GTGTGTCACACACAGCC-AGACACACGCCC
* * * *
60689237 GTGTGTCACACGCAGCCTAGCCACATGCCT
1 GTGTGTCACACACAGCC-AGACACACGCCC
60689267 GTGTGTCACACACAGCTCAGACACACGCCC
1 GTGTGTCACACACAGC-CAGACACACGCCC
60689297 GTGTGTCACACACAG
1 GTGTGTCACACACAG
60689312 TTGAGACACA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
30 61 0.98
31 1 0.02
ACGTcount: A:0.26, C:0.35, G:0.23, T:0.16
Consensus pattern (29 bp):
GTGTGTCACACACAGCCAGACACACGCCC
Found at i:60689319 original size:30 final size:29
Alignment explanation
Indices: 60689229--60689330 Score: 114
Period size: 30 Copynumber: 3.4 Consensus size: 29
60689219 TGGCCAAGAA
* *
60689229 ACACGCCCGTGTGTCACACGCAGCCTAGCC
1 ACACGCCCGTGTGTCACACACAG-CTAGAC
* *
60689259 ACATGCCTGTGTGTCACACACAGCTCAGAC
1 ACACGCCCGTGTGTCACACACAGCT-AGAC
*
60689289 ACACGCCCGTGTGTCACACACAGTTGAGAC
1 ACACGCCCGTGTGTCACACACAGCT-AGAC
* *
60689319 ACAAGCTCGTGT
1 ACACGCCCGTGT
60689331 CCCTGGCCGT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.25, C:0.35, G:0.23, T:0.18
Consensus pattern (29 bp):
ACACGCCCGTGTGTCACACACAGCTAGAC
Found at i:60690467 original size:20 final size:21
Alignment explanation
Indices: 60690444--60690487 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
60690434 ACCCTTTCAA
* *
60690444 ATTTTC-TTATTTTCATTTGC
1 ATTTTCATTACTTTCAGTTGC
60690464 A-TTTCATTACTTTCAGTTGC
1 ATTTTCATTACTTTCAGTTGC
60690484 ATTT
1 ATTT
60690488 ACTTTCTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.20
20 14 0.70
21 2 0.10
ACGTcount: A:0.18, C:0.16, G:0.07, T:0.59
Consensus pattern (21 bp):
ATTTTCATTACTTTCAGTTGC
Found at i:60693709 original size:29 final size:30
Alignment explanation
Indices: 60693676--60693735 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
60693666 TCCTTAACTC
60693676 AAACTTTAG-AAAATTACAATTTTGCCCCT
1 AAACTTTAGCAAAATTACAATTTTGCCCCT
* * * *
60693705 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGCAAAATTACAATTTTGCCCCT
60693735 A
1 A
60693736 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGCAAAATTACAATTTTGCCCCT
Found at i:60696088 original size:42 final size:42
Alignment explanation
Indices: 60696041--60696132 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
60696031 TGGCCCATAG
* ** * *
60696041 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
60696083 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
60696125 GCCCATTT
1 GCCCATTT
60696133 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
Found at i:60696317 original size:25 final size:25
Alignment explanation
Indices: 60696280--60696349 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
60696270 CTCTTTTAAT
* *
60696280 AACTAGGGAAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
60696305 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
60696330 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60696350 TGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 35 0.90
26 4 0.10
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:60697179 original size:26 final size:27
Alignment explanation
Indices: 60697146--60697215 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
60697136 TCATATGGAA
*
60697146 CATA-AGGGCCTATT-C-GTCATTTTAC
1 CATACAGGG-CTATTACGGTCACTTTAC
*
60697171 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
60697198 CCTACAGGGGCT-TTACGG
1 CATACA-GGGCTATTACGG
60697216 CCTTTTTACC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
25 8 0.22
26 5 0.14
27 20 0.54
28 4 0.11
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCACTTTAC
Found at i:60697196 original size:27 final size:27
Alignment explanation
Indices: 60697161--60697215 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
60697151 GGGCCTATTC
*
60697161 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
60697188 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
60697215 G
1 G
60697216 CCTTTTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:60697223 original size:27 final size:27
Alignment explanation
Indices: 60697163--60697238 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
60697153 GCCTATTCGT
*
60697163 CATTTTACCATACAGGGGTATTACGGT
1 CATTTTACCATACAGGGGTATTACGGC
* *
60697190 CACTTTACCCTACAGGGGCT-TTACGGC
1 CATTTTACCATACAGGGG-TATTACGGC
* *
60697217 CTTTTTACC-TATTAGGGGTATT
1 CATTTTACCATA-CAGGGGTATT
60697239 TTAGTCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 36 0.90
28 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
CATTTTACCATACAGGGGTATTACGGC
Found at i:60697309 original size:27 final size:27
Alignment explanation
Indices: 60697283--60697427 Score: 125
Period size: 27 Copynumber: 5.3 Consensus size: 27
60697273 ATCTACAAAC
*
60697283 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
60697310 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
60697339 TAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** *
60697366 CAGGGGTATTTTGGTAATTTTCCT-AAT
1 CAAGGGTATTTCAGTAATTTT-GTAAAT
* **
60697393 CGAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
60697420 CAAGGGTA
1 CAAGGGTA
60697428 AAACGATAAT
Statistics
Matches: 96, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.02
27 68 0.71
28 8 0.08
29 17 0.18
30 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:60697437 original size:27 final size:27
Alignment explanation
Indices: 60697407--60697506 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
60697397 GGTATTTTGG
* *
60697407 TAATTTTGTAAATCAAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
60697434 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
60697461 TAATTCTATAAATCGAGGGTAAAA-TA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
60697487 GTAATTCTATAAATTGAGGG
1 -TAATTCTGTAAATCGAGGG
60697507 CATTTCAGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:60713507 original size:40 final size:41
Alignment explanation
Indices: 60713432--60713527 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 41
60713422 TGACTATGTT
* **
60713432 TGGCACTAGGTGTGCGGTTCGAAATAGCTTTGGCTACA-AA
1 TGGCACTAAGTGTGCGGTTCGAAATAGCTCCGGCTACATAA
* * * *
60713472 TGGCACTAAGTGTGCGTGTT-GGAATTGCTCCGGCTATATGA
1 TGGCACTAAGTGTGCG-GTTCGAAATAGCTCCGGCTACATAA
60713513 T-GCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60713528 ATACCAAGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 42 0.89
41 5 0.11
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGGTTCGAAATAGCTCCGGCTACATAA
Found at i:60715038 original size:46 final size:46
Alignment explanation
Indices: 60714988--60715160 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
60714978 TGGTTGAGCA
60714988 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60715034 TCCGAACTCGTTGAGTTGAGTTCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60715079 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60715127 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60715161 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60715144 original size:93 final size:93
Alignment explanation
Indices: 60714985--60715156 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
60714975 GGATGGTTGA
* *
60714985 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60715050 TGAGTT-CGAGTTCATGAGATGTAACTAG
66 TGA-TTCCGAGTTCATGAGATGTAACTAG
* *
60715078 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60715143 TGATTCCGAGTTCA
66 TGATTCCGAGTTCA
60715157 CTTAGGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGATTCCGAGTTCATGAGATGTAACTAG
Found at i:60718822 original size:29 final size:29
Alignment explanation
Indices: 60718767--60718866 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
60718757 ATAGTAAGTC
60718767 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* *
60718795 CGCACACTTAATGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
60718824 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
60718852 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60718867 ATGCAATTTA
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
28 38 0.58
29 27 0.42
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:60718865 original size:28 final size:28
Alignment explanation
Indices: 60718767--60718894 Score: 159
Period size: 29 Copynumber: 4.5 Consensus size: 28
60718757 ATAGTAAGTC
*
60718767 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
60718795 CGCACACTTAATGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
60718824 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** *
60718852 TGCACACTTAGTGCTATGCAATTTAAAC-
1 CGCACACTTAGTGCTATATAA-TCAAACT
60718880 CAGCACACTTAGTGC
1 C-GCACACTTAGTGC
60718895 CAATCTCATG
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
28 43 0.49
29 44 0.51
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60720775 original size:49 final size:49
Alignment explanation
Indices: 60720650--60721273 Score: 1043
Period size: 49 Copynumber: 12.9 Consensus size: 49
60720640 GCCCTTCGGA
* * * * *
60720650 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60720697 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60720744 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60720793 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60720842 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60720889 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60720938 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60720985 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60721034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60721083 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60721130 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
60721179 CTTATCACATATATATACACTTTTACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60721228 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
60721274 CGCCATACTA
Statistics
Matches: 543, Mismatches: 24, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 181 0.33
49 361 0.66
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60720854 original size:96 final size:97
Alignment explanation
Indices: 60720650--60721273 Score: 1019
Period size: 96 Copynumber: 6.5 Consensus size: 97
60720640 GCCCTTCGGA
* * * * * * * *
60720650 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
60720712 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
*
60720744 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
60720809 ACACTTTCACATTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
60720842 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
*
60720906 CACTTTCACATTCATCATATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
60720938 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
60721002 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
*
60721034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
60721097 ACACTTTCACATTCATCACATTGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
60721130 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
60721195 ACACTTTTACATTCATCACATCGACTATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
60721228 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTA
60721274 CGCCATACTA
Statistics
Matches: 504, Mismatches: 18, Indels: 12
0.94 0.03 0.02
Matches are distributed among these distances:
94 8 0.02
96 323 0.64
98 173 0.34
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (97 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60720905 original size:145 final size:146
Alignment explanation
Indices: 60720650--60721273 Score: 1039
Period size: 145 Copynumber: 4.3 Consensus size: 146
60720640 GCCCTTCGGA
* * * * * * *
60720650 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
60720712 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
60720777 ACATCGGCCATTCGGC
131 ACATCGGCCATTAGGC
60720793 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
60720857 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
60720922 ATATCGGCCATTAGGC
131 ACATCGGCCATTAGGC
60720938 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
60721001 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
*
60721066 CACATCGGCTATTAGGC
130 CACATCGGCCATTAGGC
*
60721083 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*
60721146 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTTACATTCAT
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
* *
60721211 CACATCGACTATTAGGC
130 CACATCGGCCATTAGGC
*
60721228 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
60721274 CGCCATACTA
Statistics
Matches: 459, Mismatches: 16, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
143 57 0.12
144 1 0.00
145 367 0.80
147 34 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (146 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATTAGGC
Found at i:60730704 original size:28 final size:28
Alignment explanation
Indices: 60730672--60730799 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
60730662 ATAGTAAGTC
*
60730672 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
60730700 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
60730729 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
60730757 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
60730786 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60730800 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60730762 original size:57 final size:57
Alignment explanation
Indices: 60730671--60730799 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
60730661 TATAGTAAGT
*
60730671 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
60730728 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
60730785 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
60730800 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:60740147 original size:21 final size:21
Alignment explanation
Indices: 60740121--60740160 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
60740111 TTTCCAATAC
60740121 CAAATCA-TAGTCGAATCATTT
1 CAAATCACTA-TCGAATCATTT
60740142 CAAATCACTATCGAATCAT
1 CAAATCACTATCGAATCAT
60740161 GGTCGAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (21 bp):
CAAATCACTATCGAATCATTT
Found at i:60742384 original size:29 final size:29
Alignment explanation
Indices: 60742324--60742386 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
60742314 CATACATTTG
* *
60742324 AAATTTAGTCCCCTACTTTTATTTTTGGA
1 AAATTTAGTCCCCTACTTTTATATTTGAA
*
60742353 AAATTTAGTCCCTCTACCTTTT-TATTTAAA
1 AAATTTAGTCCC-CTA-CTTTTATATTTGAA
60742383 AAAT
1 AAAT
60742387 ACATATCCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 12 0.41
30 12 0.41
31 5 0.17
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.46
Consensus pattern (29 bp):
AAATTTAGTCCCCTACTTTTATATTTGAA
Found at i:60747199 original size:17 final size:19
Alignment explanation
Indices: 60747173--60747209 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
60747163 TGTAAAACCC
60747173 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
60747191 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
60747209 A
1 A
60747210 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:60749894 original size:40 final size:39
Alignment explanation
Indices: 60749813--60749914 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 39
60749803 GAACCAAGTA
* * * * *
60749813 CCTTCGGGATTTAGCCAGATATAGCTACTCGCTCTACTG
1 CCTTCGGGACTTAGCCGGATATAGCTACTCGCACAAATG
60749852 CCTTCGGGACTTAGCTCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGC-CGGATATAGCT-ACTCGCACAAATG
60749892 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAG-CCGGATAT
60749915 CATCCGAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
39 15 0.27
40 39 0.71
41 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTCGCACAAATG
Found at i:60757902 original size:17 final size:19
Alignment explanation
Indices: 60757876--60757912 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
60757866 TATAAAACCC
60757876 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
60757894 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
60757912 A
1 A
60757913 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:60762463 original size:42 final size:42
Alignment explanation
Indices: 60762416--60762510 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 42
60762406 AGTTAGGCAA
* **
60762416 TTACACGGCCTGGCACACGGGCATGTGAGGCTATTTTGAGAG
1 TTACACGGCCTGGCACACGGGCATGTGAGGCCATTTCAAGAG
* * * * * *
60762458 TTACACGACTTGGCATATGGGCGTGTGAGGCCATTTCAAGCG
1 TTACACGGCCTGGCACACGGGCATGTGAGGCCATTTCAAGAG
60762500 TTACACGGCCT
1 TTACACGGCCT
60762511 AACACACAGC
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (42 bp):
TTACACGGCCTGGCACACGGGCATGTGAGGCCATTTCAAGAG
Found at i:60763654 original size:27 final size:27
Alignment explanation
Indices: 60763624--60763780 Score: 226
Period size: 27 Copynumber: 5.8 Consensus size: 27
60763614 CGAGTTGTAG
* *
60763624 AATTACCATTTTACCCTCAATTTATAA
1 AATTACCATTTTACCCTCGATTTACAA
60763651 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* ** *
60763678 AATTACCATTTTACCCTTGATTTGTAG
1 AATTACCATTTTACCCTCGATTTACAA
60763705 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
60763732 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
* *
60763759 AATTATCGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
60763781 GTGAAATTAC
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 114 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:60763728 original size:81 final size:81
Alignment explanation
Indices: 60763618--60763780 Score: 265
Period size: 81 Copynumber: 2.0 Consensus size: 81
60763608 TGCCTGCGAG
*
60763618 TTGTAGAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTACCCTC-GATTTACAAAATT
1 TTGTAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACCCTCAG-TTTACAAAATT
*
60763682 ACCATTTTACCCTTGAT
65 ACCATTTTACCCTCGAT
*
60763699 TTGTAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTA
1 TTGTAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTA
* *
60763764 TCGTTTTACCCTCGAT
66 CCATTTTACCCTCGAT
60763780 T
1 T
60763781 GTGAAATTAC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 75 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (81 bp):
TTGTAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTA
CCATTTTACCCTCGAT
Found at i:60763802 original size:27 final size:27
Alignment explanation
Indices: 60763779--60763938 Score: 171
Period size: 27 Copynumber: 5.9 Consensus size: 27
60763769 TTACCCTCGA
**
60763779 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCAAAATACCCCTAGT
**
60763805 AGGATAGAA-TTACCAAAATACCCCTAGT
1 TTG-T-GAAATTACCAAAATACCCCTAGT
*
60763833 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* * * * *
60763860 TTGTAAAATTCCCGAAATACCACTGGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* *
60763887 TTGTGAAATTACCAAAATACCCTTAAT
1 TTGTGAAATTACCAAAATACCCCTAGT
*
60763914 TTGTAAAATTACCAAAATACCCCTA
1 TTGTGAAATTACCAAAATACCCCTA
60763939 ATTTACAAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.03
27 101 0.92
28 6 0.05
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
TTGTGAAATTACCAAAATACCCCTAGT
Done.