Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 184 of 332
Found at i:61094704 original size:29 final size:29
Alignment explanation
Indices: 61094671--61094726 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
61094661 CCTAAACTCG
61094671 TCAAATTATTCCAATTGAGGTAAAATTCT
1 TCAAATTATTCCAATTGAGGTAAAATTCT
61094700 TCAAATTATTCCAATTGAGGTAAAATT
1 TCAAATTATTCCAATTGAGGTAAAATT
61094727 TCGACTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (29 bp):
TCAAATTATTCCAATTGAGGTAAAATTCT
Found at i:61114261 original size:48 final size:48
Alignment explanation
Indices: 61114158--61114432 Score: 308
Period size: 48 Copynumber: 5.8 Consensus size: 48
61114148 TAAAGTACCA
** * * *
61114158 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATC-TAATATCATCGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCA-CAT-ATATCATCACCG
* * *
61114205 ATGCCATGTCTCAAACATGGTCTTAGACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCG
* *
61114253 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCG
* * * **
61114301 GTGCCATGTCCCAAACATGGTCTTATA-TAGGCACATAAATCATTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-GGCACATATATCATCACCG
*
61114349 ATGCCATGTCCCAAACATGGTCTTACA-TAGGCATATATATCATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-GGCACATATATCATCACCG
* * *
61114397 ATGCCATGTCCTAGACATGGTCTTACACAGGCACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCACAT
61114433 TTAGCACGAT
Statistics
Matches: 193, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
47 23 0.12
48 168 0.87
49 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCG
Found at i:61114432 original size:96 final size:96
Alignment explanation
Indices: 61114158--61114432 Score: 340
Period size: 96 Copynumber: 2.9 Consensus size: 96
61114148 TAAAGTACCA
* * * * *
61114158 ATGCCATGTCCCCGACATGGTCTTACAT--GAATCTAATATCATCGCTGATGCCATGT-CTCAAA
1 ATGCCATGTCCCAGACATGGTCTTACATAGGCATAT-ATATCATCACCGATGCCATGTCCT-AAA
* * * *
61114220 CATGGTCTTAGACTGGCACACATATCATCACCG
64 CATGGTCTTACACAGGCACATAAATCATCACCG
* * * *
61114253 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCGGTGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACATAGGCATATATATCATCACCGATGCCATGTCCTAAACA
* * **
61114318 TGGTCTTATATAGGCACATAAATCATTGCCG
66 TGGTCTTACACAGGCACATAAATCATCACCG
* *
61114349 ATGCCATGTCCCAAACATGGTCTTACATAGGCATATATATCATCACCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATAGGCATATATATCATCACCGATGCCATGTCCTAAACA
61114414 TGGTCTTACACAGGCACAT
66 TGGTCTTACACAGGCACAT
61114433 TTAGCACGAT
Statistics
Matches: 153, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
95 26 0.17
96 123 0.80
97 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACATAGGCATATATATCATCACCGATGCCATGTCCTAAACA
TGGTCTTACACAGGCACATAAATCATCACCG
Found at i:61116494 original size:23 final size:23
Alignment explanation
Indices: 61116468--61116514 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
61116458 ATCAAACACC
61116468 AAGCTTTCATATTTCATCATCAA
1 AAGCTTTCATATTTCATCATCAA
61116491 AAGCTTTCATATTTCATCATCAA
1 AAGCTTTCATATTTCATCATCAA
61116514 A
1 A
61116515 CATCCAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.38
Consensus pattern (23 bp):
AAGCTTTCATATTTCATCATCAA
Found at i:61131362 original size:93 final size:93
Alignment explanation
Indices: 61131250--61131421 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
61131240 CGCCCATAAG
*
61131250 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
61131314 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
61131343 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61131408 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61131422 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61131416 original size:46 final size:46
Alignment explanation
Indices: 61131243--61131418 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
61131233 TGTAACCCGC
* *
61131243 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
61131289 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61131339 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
61131382 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61131419 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61131876 original size:30 final size:30
Alignment explanation
Indices: 61131841--61131897 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
61131831 TAACTCAAAT
61131841 TTTTGCAAAATTACAATTTTACCCCTAAAC
1 TTTTGCAAAATTACAATTTTACCCCTAAAC
* * * *
61131871 TTTTGCATATTTACATTTTTTCCCCTA
1 TTTTGCAAAATTACAATTTTACCCCTA
61131898 GGCTCGGGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.04, T:0.46
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTACCCCTAAAC
Found at i:61132944 original size:40 final size:40
Alignment explanation
Indices: 61132894--61132986 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
61132884 CTTGGTATCA
*
61132894 CACACTTAGTGCCTCA-TATAGCCAAAGCTATTCCAATTCG
1 CACACTTAGTGCCT-ATTATAGCCAAAGCTATTCCAAATCG
* * *
61132934 CACACGTAGTG-CTATTTATAGCCGAAGCTATTTCAAATCG
1 CACACTTAGTGCCTA-TTATAGCCAAAGCTATTCCAAATCG
*
61132974 CAAACTTAGTGCC
1 CACACTTAGTGCC
61132987 GAACATAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.05
40 40 0.91
41 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCTATTATAGCCAAAGCTATTCCAAATCG
Found at i:61141238 original size:27 final size:28
Alignment explanation
Indices: 61141208--61141305 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
61141198 ATATTAAGTC
*
61141208 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
61141235 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
61141263 CGCACACTTAGTGTTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
61141292 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61141306 CAATCTCAGG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:61148408 original size:25 final size:25
Alignment explanation
Indices: 61148378--61148428 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
61148368 TACGTATTTA
61148378 ACCACATAAAACTTTTACCATTCTC
1 ACCACATAAAACTTTTACCATTCTC
61148403 ACCACATAAAACTTTTACCATTCTC
1 ACCACATAAAACTTTTACCATTCTC
61148428 A
1 A
61148429 TACTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.31, G:0.00, T:0.31
Consensus pattern (25 bp):
ACCACATAAAACTTTTACCATTCTC
Found at i:61169915 original size:21 final size:21
Alignment explanation
Indices: 61169888--61169936 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
61169878 TCAAATAGGC
*
61169888 ACTTTTAACATATAGCATACA
1 ACTTTTAACATATAGCAAACA
*
61169909 GCTTTTAACATATAGCAAACA
1 ACTTTTAACATATAGCAAACA
61169930 ACTTTTA
1 ACTTTTA
61169937 CATTTTACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (21 bp):
ACTTTTAACATATAGCAAACA
Found at i:61171906 original size:27 final size:27
Alignment explanation
Indices: 61171876--61172285 Score: 506
Period size: 27 Copynumber: 15.2 Consensus size: 27
61171866 AAAGTACTCC
61171876 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
61171903 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
61171930 C-AGTTTACAGAATTACCTTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
61171957 C-AGTTTACAGAATTATCGTTTTATCAT
1 CGA-TTTACAGAATTACCGTTTTACCCT
61171984 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
61172011 CAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
61172038 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
61172065 CTATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
61172092 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
61172119 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
61172146 CAATTTACAGAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
61172173 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
61172200 TGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
61172227 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
61172254 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
61172281 TGATT
1 CGATT
61172286 GTGAAATTAC
Statistics
Matches: 335, Mismatches: 42, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.01
27 329 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:61172485 original size:27 final size:27
Alignment explanation
Indices: 61172290--61172485 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
61172280 TTGATTGTGA
* *
61172290 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
61172317 AATTTCTGAAATACCCATATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61172344 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
61172371 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61172398 AATTATCGAAATATCCTCGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
61172425 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61172452 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
61172479 AATTACC
1 AATTACC
61172486 ATTTTGCCCC
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:61172722 original size:27 final size:26
Alignment explanation
Indices: 61172684--61172766 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
61172674 CGGAGGAAGC
*
61172684 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTAGTGGCTATGCCAC-AATATCT
*
61172711 GTTCTAGTGGCTCTGCCACAATATCT
1 GTTCTAGTGGCTATGCCACAATATCT
* * * * *
61172737 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTAGTGGCTATGCCACAATATCT
61172764 GTT
1 GTT
61172767 GACCGATCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTAGTGGCTATGCCACAATATCT
Found at i:61172882 original size:22 final size:22
Alignment explanation
Indices: 61172854--61172912 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
61172844 CCCGTTATTA
61172854 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
61172876 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
61172898 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
61172913 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:61173126 original size:27 final size:27
Alignment explanation
Indices: 61173068--61173144 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
61173058 GTATTCTGTT
* * *
61173068 AGGTGGGTTTGCCACATTATCTGATTC
1 AGGTGGCTCTGCCACAATATCTGATTC
*
61173095 TGGTGGCTCTGCCACAATATCT-ATATC
1 AGGTGGCTCTGCCACAATATCTGAT-TC
* * *
61173122 AGGTGACTCTGTCACGATATCTG
1 AGGTGGCTCTGCCACAATATCTG
61173145 TTCTGGCAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.05
27 38 0.95
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (27 bp):
AGGTGGCTCTGCCACAATATCTGATTC
Found at i:61173277 original size:6 final size:6
Alignment explanation
Indices: 61173268--61173435 Score: 159
Period size: 6 Copynumber: 27.8 Consensus size: 6
61173258 TTGCATTCAC
* * * *
61173268 ATTCTG ATTCTG ATTCTG -TCACGTA ATTTTG ATTTTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
61173317 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
*
61173365 ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
61173413 -TTACTG ATTCTG ATTCTT ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
61173436 CATTTTGGTT
Statistics
Matches: 136, Mismatches: 13, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.07
6 117 0.86
7 7 0.05
8 2 0.01
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:61173337 original size:30 final size:30
Alignment explanation
Indices: 61173268--61173435 Score: 203
Period size: 30 Copynumber: 5.4 Consensus size: 30
61173258 TTGCATTCAC
* *
61173268 ATTCTGATTCTGATTCTGTCACGTAATTTTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* *
61173299 ATTTTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
61173329 ATTCTGATTCTGATTCTGTTACTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACT-A-----ATTCTG
61173365 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
61173395 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
61173425 ATTCTTATTCT
1 ATTCTGATTCT
61173436 CATTTTGGTT
Statistics
Matches: 121, Mismatches: 8, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
29 1 0.01
30 69 0.57
31 22 0.18
35 1 0.01
36 28 0.23
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:61178623 original size:43 final size:43
Alignment explanation
Indices: 61178571--61178723 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 43
61178561 CGCATCTATT
* * ** *
61178571 ATGAACTCGGACCACTCAATGAGCTTAGATTCTTGCATCCATA
1 ATGAACTCGGACCACTCAACGAGCTTAGATTCTTACATATATC
* *
61178614 ATGAACTCGGACCA-TGCAACGAGCTCAGATGC-TACATATATC
1 ATGAACTCGGACCACT-CAACGAGCTTAGATTCTTACATATATC
* * *
61178656 ATGAAATTGGACCACTCAACAAG-TTCAGATTCTTACATATATC
1 ATGAACTCGGACCACTCAACGAGCTT-AGATTCTTACATATATC
*
61178699 ACGAACTCGGACCACTCAACGAGCT
1 ATGAACTCGGACCACTCAACGAGCT
61178724 CGGATTTCTT
Statistics
Matches: 89, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.34
43 57 0.64
44 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGAACTCGGACCACTCAACGAGCTTAGATTCTTACATATATC
Found at i:61179025 original size:44 final size:44
Alignment explanation
Indices: 61178977--61179064 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
61178967 ATATTCACCA
61178977 CATAATTTTAACACATCAATTTAAGTTCAAGCATAAACAATGAT
1 CATAATTTTAACACATCAATTTAAGTTCAAGCATAAACAATGAT
*
61179021 CATAATTTTAACACATCAATTTAAGTTCAAGCATGAACAATGAT
1 CATAATTTTAACACATCAATTTAAGTTCAAGCATAAACAATGAT
61179065 ATTATTGCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (44 bp):
CATAATTTTAACACATCAATTTAAGTTCAAGCATAAACAATGAT
Found at i:61180206 original size:14 final size:14
Alignment explanation
Indices: 61180187--61180217 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
61180177 AATAAGCAAA
61180187 TGAGCATTTAAGAG
1 TGAGCATTTAAGAG
61180201 TGAGCATTTAAGAG
1 TGAGCATTTAAGAG
61180215 TGA
1 TGA
61180218 TAAATGGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (14 bp):
TGAGCATTTAAGAG
Found at i:61182831 original size:28 final size:28
Alignment explanation
Indices: 61182800--61182865 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
61182790 CAATGCCTCG
* *
61182800 CACACTAAGTGCCATACTTGATATCTCA
1 CACACTAAGTGCCACACTCGATATCTCA
*
61182828 CACACTAAGTGCCACACTCGATATCTCG
1 CACACTAAGTGCCACACTCGATATCTCA
61182856 CACACTAAGT
1 CACACTAAGT
61182866 ACCGTACGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.24
Consensus pattern (28 bp):
CACACTAAGTGCCACACTCGATATCTCA
Found at i:61183291 original size:37 final size:37
Alignment explanation
Indices: 61183250--61183332 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
61183240 ACATTTTTCA
* *
61183250 CAATTTAGTCCTTATGACATAAAATTGCAAATTCATG
1 CAATTTAGTCCTTATCACATAAAATTGAAAATTCATG
61183287 CAATTTAGTCCTTATCACATAAAATTGAAAATTCATG
1 CAATTTAGTCCTTATCACATAAAATTGAAAATTCATG
61183324 CAATTTAGT
1 CAATTTAGT
61183333 ACAAACCCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (37 bp):
CAATTTAGTCCTTATCACATAAAATTGAAAATTCATG
Found at i:61186525 original size:25 final size:25
Alignment explanation
Indices: 61186486--61186549 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
61186476 TGTGGTCGAA
*
61186486 TATATATTTCATTTACAAAATAACAC
1 TATACATTTCATTTACAAAATAAC-C
*
61186512 -ATACATTTCATTTACAAAATCACC
1 TATACATTTCATTTACAAAATAACC
*
61186536 TATACTTTTCATTT
1 TATACATTTCATTT
61186550 GGCCAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (25 bp):
TATACATTTCATTTACAAAATAACC
Found at i:61186947 original size:41 final size:41
Alignment explanation
Indices: 61186901--61187067 Score: 221
Period size: 41 Copynumber: 4.0 Consensus size: 41
61186891 GCTAAGCATA
*
61186901 AAGCCT-AGTATAATACATCGGCACAAAGCCTGCTAGGCAAT
1 AAGCCTGA-TATAATACACCGGCACAAAGCCTGCTAGGCAAT
* * * *
61186942 AAGCCTGATATAATACACCAGCATATAAAGCTTGCTAGG-AAA
1 AAGCCTGATATAATACACCGGC--ACAAAGCCTGCTAGGCAAT
* *
61186984 AAGCCTGATATAATAAACCGGCACAAGGCCTGCTAGGCAAT
1 AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAAT
*
61187025 AAGCCTGATTTAATACACCGGCACAAAGCCTGCTAGGCAAT
1 AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAAT
61187066 AA
1 AA
61187068 AGCCCGAATA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
40 12 0.11
41 60 0.56
42 23 0.21
43 13 0.12
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (41 bp):
AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAAT
Found at i:61187070 original size:83 final size:84
Alignment explanation
Indices: 61186890--61187071 Score: 239
Period size: 83 Copynumber: 2.2 Consensus size: 84
61186880 ACATAAAATT
* * *
61186890 TGCTAAGC-ATAAAGCCTAGTATAATACATCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAATAAAGCCTAGTATAATAAACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
* *
61186954 ATACACCAGCATATAAAGCT
66 ATACACCAGCA-ACAAAGCC
* *
61186974 TGCTAGG-AA-AAAGCCT-GATATAATAAACCGGCACAAGGCCTGCTAGGCAATAAGCCTGATTT
1 TGCTAGGCAATAAAGCCTAG-TATAATAAACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATAT
*
61187036 AATACACCGGC-ACAAAGCC
65 AATACACCAGCAACAAAGCC
61187055 TGCTAGGCAATAAAGCC
1 TGCTAGGCAATAAAGCC
61187072 CGAATATCAC
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
81 13 0.15
82 3 0.03
83 63 0.73
84 7 0.08
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (84 bp):
TGCTAGGCAATAAAGCCTAGTATAATAAACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
ATACACCAGCAACAAAGCC
Found at i:61193651 original size:41 final size:41
Alignment explanation
Indices: 61193594--61193688 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
61193584 ACATAAAATT
* ** *
61193594 TGCTAGGC-ATAAAGCCTAGTATAATACAGTGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTAATATAATACACCGGCACAAAGCC
61193635 TGCTAGGCAATAAGCCTAATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTAATATAATACACCGGCACAAAGCC
61193676 TGCTAGGCAATAA
1 TGCTAGGCAATAA
61193689 AGCCCGAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 47 0.96
42 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTAATATAATACACCGGCACAAAGCC
Found at i:61199210 original size:18 final size:18
Alignment explanation
Indices: 61199187--61199222 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
61199177 TATGTTGCCT
61199187 TTGTGGCGTACTATGTTA
1 TTGTGGCGTACTATGTTA
*
61199205 TTGTGGCGTACTTTGTTA
1 TTGTGGCGTACTATGTTA
61199223 AGTCTGTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.11, G:0.28, T:0.47
Consensus pattern (18 bp):
TTGTGGCGTACTATGTTA
Found at i:61208379 original size:43 final size:43
Alignment explanation
Indices: 61208331--61208479 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
61208321 TCCTAGATAT
*
61208331 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCACACAG
* * * *
61208374 GGTCTTACAAG-AAGT-AGATTAAT-GATGTCGA-TGTCCCACACAT
1 GGTCTTACATGTAA-TCACA-T-ATCGATG-CCACTGTCCCACACAG
* *
61208417 GGTCTTACATGTAATCGCA-ATACAATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATAT-CGATGCCACTGTCCCACACAG
61208460 GGTCTTACATGTAATCACAT
1 GGTCTTACATGTAATCACAT
61208480 CTCGGTAACC
Statistics
Matches: 84, Mismatches: 12, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
41 2 0.02
42 5 0.06
43 70 0.83
44 7 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCACTGTCCCACACAG
Found at i:61216456 original size:41 final size:41
Alignment explanation
Indices: 61216362--61216458 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
61216352 TGATATTCGT
* *
61216362 GCTTTATGCCTACCAGGCTTTGTGCCGGTGTGTTATATCAG
1 GCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAG
61216403 GCCTATTA--CCTAGCAGGCTCTT-TGCCGGTGTATTATA-CTAG
1 G-CT-TTATGCCTAGCAGGCT-TTGTGCCGGTGTATTATATC-AG
61216444 GCTTTATGCCTAGCA
1 GCTTTATGCCTAGCA
61216459 AATTTTATCT
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
39 3 0.06
40 3 0.06
41 35 0.73
42 4 0.08
43 3 0.06
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (41 bp):
GCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAG
Found at i:61219361 original size:22 final size:23
Alignment explanation
Indices: 61219314--61219364 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
61219304 CATCTCATTG
*
61219314 GAGCTTACTAATTTAGCTCGAAA
1 GAGCTTACTAATTCAGCTCGAAA
*
61219337 GAGCTTA-TTATTCAGCTC-AACA
1 GAGCTTACTAATTCAGCTCGAA-A
61219359 GAGCTT
1 GAGCTT
61219365 GCCATTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 16 0.64
23 7 0.28
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (23 bp):
GAGCTTACTAATTCAGCTCGAAA
Found at i:61231039 original size:47 final size:47
Alignment explanation
Indices: 61230961--61231413 Score: 708
Period size: 47 Copynumber: 9.6 Consensus size: 47
61230951 CCCTTCGAGA
* * ** * * *
61230961 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61231008 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61231055 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61231102 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61231149 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61231196 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61231243 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61231292 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61231341 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61231388 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
61231414 CACAATTATC
Statistics
Matches: 380, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 288 0.76
49 92 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61234596 original size:40 final size:40
Alignment explanation
Indices: 61234551--61234948 Score: 561
Period size: 40 Copynumber: 10.1 Consensus size: 40
61234541 CGAATACACG
* * * *
61234551 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
61234591 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
61234631 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** *
61234671 TCACTAGCACGAATGCTCTTTGAAACTTAACCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61234711 TCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
**
61234751 TCACTAGCATGAATGCTCTTCGAAACTTAGCCCGGATA-A
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61234790 TCACTAGCATGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61234830 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61234870 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61234910 TCACTAGCATGAATGCTCTTC-GGACTTAG-CCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61234947 TC
1 TC
61234949 GTCGAGACCT
Statistics
Matches: 327, Mismatches: 30, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
37 4 0.01
38 6 0.02
39 45 0.14
40 272 0.83
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:61234846 original size:159 final size:159
Alignment explanation
Indices: 61234551--61234944 Score: 569
Period size: 159 Copynumber: 2.5 Consensus size: 159
61234541 CGAATACACG
* * * * * * * *
61234551 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGA
* *
61234616 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAC
65 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAC
*
61234681 GAATGCTCTTTGAAACTTAACCCGGATACA
130 GAATGCTCTTCGAAACTTAACCCGGATACA
* *
61234711 TCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACATCACTAGCATGAATGCTCTTCGAAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCG-GA
*
61234776 CTTAGCCCGGATA-ATCACTAGCATGAATGCTCTTC-GAGACTTAGCCCGGATACATCACTAGCA
65 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACTAGCA
* ** *
61234839 TGAATGCTCTTCGGGACTTAGCCCGGATACA
129 CGAATGCTCTTCGAAACTTAACCCGGATACA
*
61234870 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAC
61234935 TTAG-CCGGAT
66 TTAGCCCGGAT
61234945 CATCGTCGAG
Statistics
Matches: 211, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
157 6 0.03
158 8 0.04
159 133 0.63
160 64 0.30
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (159 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAC
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
AATGCTCTTCGAAACTTAACCCGGATACA
Found at i:61235043 original size:38 final size:38
Alignment explanation
Indices: 61235001--61235075 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
61234991 GAATTTTAAT
*
61235001 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
61235039 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
61235076 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:61237287 original size:47 final size:47
Alignment explanation
Indices: 61237209--61237857 Score: 1001
Period size: 47 Copynumber: 13.6 Consensus size: 47
61237199 CCCTTCGGGA
* * * * * *
61237209 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237256 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237303 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237397 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237446 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237493 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237540 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61237589 CTTATCACATATATATACACTTTCACATTCATCACATCGACCGTTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237638 CTTATCACATATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237687 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237785 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237832 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
61237858 CACAATTATC
Statistics
Matches: 567, Mismatches: 31, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 289 0.51
49 278 0.49
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61237430 original size:49 final size:49
Alignment explanation
Indices: 61237209--61237857 Score: 1024
Period size: 49 Copynumber: 13.6 Consensus size: 49
61237199 CCCTTCGGGA
* * * * *
61237209 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237256 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237303 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237350 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237397 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237446 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237493 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237540 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61237589 CTTATCACATATATATACACTTTCACATTCATCACATCGACCGTTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237638 CTTATCACATATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61237687 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61237785 CTTATCAC--ATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61237832 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
61237858 CACAATTATC
Statistics
Matches: 566, Mismatches: 28, Indels: 16
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 278 0.49
49 287 0.51
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61237893 original size:96 final size:95
Alignment explanation
Indices: 61237209--61237857 Score: 970
Period size: 96 Copynumber: 6.8 Consensus size: 95
61237199 CCCTTCGGGA
* * * * * * * *
61237209 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61237272 ACTTTCACATTCATCACATCGGCCATTAGGC
66 AC-TTCACATTCATCACATCGGCCATTAGGC
* *
61237303 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61237366 ACTTTCACATTCATCACATCGGCCATTAGGC
66 AC-TTCACATTCATCACATCGGCCATTAGGC
*
61237397 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTACGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
61237460 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
61237493 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61237558 ACTTTCACATTCATCACATCGGCCATTAGGC
66 AC-TTCACATTCATCACATCGGCCATTAGGC
* * *
61237589 CTTATCACATATATATACACTTTCACATTCATCACATCGACCGTTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
61237654 ACACTTTCACATTCATCACATAGGCCATTAGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
* *
61237687 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
61237752 ACACTTTCACATTCATCACATCGGCCATTCGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
*
61237785 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61237850 A-TTCACAT
66 ACTTCACAT
61237858 CACAATTATC
Statistics
Matches: 524, Mismatches: 25, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
94 144 0.27
96 194 0.37
98 186 0.35
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTCACATTCATCACATCGGCCATTAGGC
Found at i:61244244 original size:22 final size:22
Alignment explanation
Indices: 61244200--61244245 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
61244190 TTTCAACATC
* *
61244200 TAAAACATTACATTAAGCTAAT
1 TAAAACAATACATTAAGCAAAT
* *
61244222 TAAAACAATATATTAATCAAAT
1 TAAAACAATACATTAAGCAAAT
61244244 TA
1 TA
61244246 GTCCATTGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (22 bp):
TAAAACAATACATTAAGCAAAT
Found at i:61250444 original size:20 final size:20
Alignment explanation
Indices: 61250419--61250459 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
61250409 GGAAGTATGA
61250419 TTCATGGGTTATGTATGGTG
1 TTCATGGGTTATGTATGGTG
61250439 TTCATGGGTTATGTATGGTG
1 TTCATGGGTTATGTATGGTG
61250459 T
1 T
61250460 AATTTGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.05, G:0.34, T:0.46
Consensus pattern (20 bp):
TTCATGGGTTATGTATGGTG
Found at i:61256973 original size:3 final size:3
Alignment explanation
Indices: 61256965--61257020 Score: 76
Period size: 3 Copynumber: 18.0 Consensus size: 3
61256955 TGTAAAAAAG
*
61256965 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
*
61257011 TTTA ATA ATA
1 -ATA ATA ATA
61257021 GTAGTAGTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
3 43 0.91
4 4 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
ATA
Found at i:61257036 original size:6 final size:6
Alignment explanation
Indices: 61257016--61257049 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
61257006 TAATATTTAA
* *
61257016 TAATAG TAGTAG TAATGG TAATAG TAATAG TAAT
1 TAATAG TAATAG TAATAG TAATAG TAATAG TAAT
61257050 TTGGGCCCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (6 bp):
TAATAG
Found at i:61257040 original size:12 final size:12
Alignment explanation
Indices: 61256966--61257049 Score: 51
Period size: 12 Copynumber: 6.8 Consensus size: 12
61256956 GTAAAAAAGA
* *
61256966 TAATAATAATAA
1 TAATAGTAATAG
* *
61256978 TAATAATAATAA
1 TAATAGTAATAG
* *
61256990 TAATAATAATATT
1 TAATAGTAATA-G
* * *
61257003 TAATAATATTTAA
1 TAATAGTA-ATAG
*
61257016 TAATAGTAGTAG
1 TAATAGTAATAG
*
61257028 TAATGGTAATAG
1 TAATAGTAATAG
61257040 TAATAGTAAT
1 TAATAGTAAT
61257050 TTGGGCCCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
12 44 0.72
13 15 0.25
14 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (12 bp):
TAATAGTAATAG
Found at i:61259347 original size:9 final size:9
Alignment explanation
Indices: 61259321--61259361 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
61259311 TCGAGTTTAT
61259321 TCAAATAAC
1 TCAAATAAC
** *
61259330 TTGATTAAC
1 TCAAATAAC
61259339 TCAAATAAC
1 TCAAATAAC
61259348 TCAAATAAC
1 TCAAATAAC
61259357 TCAAA
1 TCAAA
61259362 ATATTCAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (9 bp):
TCAAATAAC
Found at i:61266463 original size:29 final size:29
Alignment explanation
Indices: 61266405--61266561 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
61266395 ATAGTAAGTC
*
61266405 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
61266433 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
61266462 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
61266491 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
61266519 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
61266548 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61266562 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:61266512 original size:57 final size:58
Alignment explanation
Indices: 61266405--61266561 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
61266395 ATAGTAAGTC
*
61266405 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
61266462 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
61266519 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
61266562 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:61268478 original size:40 final size:40
Alignment explanation
Indices: 61268296--61268511 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
61268286 ATGCCCAGGT
* * * * *
61268296 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGC
* * *
61268336 TAAGAT-CCGAAGGCATTTGTGCGAGATGCTAATTCCGGGC
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGC
* *
61268376 TAAG--CCGAAGGCATTTGTGCGAGATACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGC
*
61268414 TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGC
*
61268453 TAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGC
*
61268493 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
61268512 AACGAGTAGC
Statistics
Matches: 155, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
38 37 0.24
39 35 0.23
40 73 0.47
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGC
Found at i:61268533 original size:79 final size:79
Alignment explanation
Indices: 61268380--61268544 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
61268370 CCGGGCTAAG
* * **
61268380 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
61268445 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
61268459 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
61268522 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61268538 CCGAAGG
1 CCGAAGG
61268545 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61270359 original size:22 final size:23
Alignment explanation
Indices: 61270327--61270370 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
61270317 GTAGATTCCG
*
61270327 ATCAAATATAA-AACAAAAAAAA
1 ATCAAAAATAATAACAAAAAAAA
*
61270349 ATCAAAAATAATAATAAAAAAA
1 ATCAAAAATAATAACAAAAAAA
61270371 CAAACCAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (23 bp):
ATCAAAAATAATAACAAAAAAAA
Found at i:61270417 original size:15 final size:16
Alignment explanation
Indices: 61270391--61270425 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
61270381 CATAACAAAG
61270391 AATACAACAAAACTCA
1 AATACAACAAAACTCA
61270407 AATAC-ACAAAACTCA
1 AATACAACAAAACTCA
61270422 AATA
1 AATA
61270426 ATCACATCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14
Consensus pattern (16 bp):
AATACAACAAAACTCA
Found at i:61271224 original size:22 final size:23
Alignment explanation
Indices: 61271184--61271227 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
61271174 AAACTAAGAG
* *
61271184 AAATTATATTATGTTTAATTAAA
1 AAATTATATCATGATTAATTAAA
61271207 AAATT-TATCATGATTAATTAA
1 AAATTATATCATGATTAATTAA
61271228 CTAATACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (23 bp):
AAATTATATCATGATTAATTAAA
Found at i:61282888 original size:39 final size:40
Alignment explanation
Indices: 61282788--61282972 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
61282778 TTGAATGATG
* * * * *
61282788 TCCGAGCTATGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
61282827 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
61282868 TGCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61282907 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61282946 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
61282973 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 34 0.29
40 74 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61282994 original size:79 final size:79
Alignment explanation
Indices: 61282841--61282995 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
61282831 GGACTAAGAT
* ** **
61282841 CCGAAGGCATTTGTGCGAGATACTAATTGCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
61282906 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
61282920 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
61282983 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
61282996 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:61296911 original size:47 final size:47
Alignment explanation
Indices: 61296833--61297286 Score: 603
Period size: 47 Copynumber: 9.6 Consensus size: 47
61296823 CCCTTCGGGA
* * * *
61296833 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCAGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
61296880 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
61296927 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
61296974 CTTATCACACATACACATGTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
61297021 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
61297068 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
61297115 CTTATCACATATATATAAACT-TTCATATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
61297164 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
61297211 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
61297260 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
61297287 TATTCAAATA
Statistics
Matches: 373, Mismatches: 28, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 283 0.76
49 88 0.24
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:61298715 original size:84 final size:85
Alignment explanation
Indices: 61298549--61298726 Score: 340
Period size: 84 Copynumber: 2.1 Consensus size: 85
61298539 TATTTTATTG
*
61298549 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
61298614 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
61298634 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
61298698 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
61298718 CCCATGCTC
1 CCCATGCTC
61298727 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 53 0.58
85 39 0.42
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:61299807 original size:24 final size:25
Alignment explanation
Indices: 61299767--61299816 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
61299757 AAGGAATTCG
61299767 CACACACACATGCCTC-TAATCATT
1 CACACACACATGCCTCTTAATCATT
* *
61299791 CACACACATAGTG-CTCTTATTCATT
1 CACACACACA-TGCCTCTTAATCATT
61299816 C
1 C
61299817 GTTATTACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.30, C:0.34, G:0.06, T:0.30
Consensus pattern (25 bp):
CACACACACATGCCTCTTAATCATT
Found at i:61300025 original size:40 final size:40
Alignment explanation
Indices: 61299980--61300338 Score: 553
Period size: 40 Copynumber: 9.1 Consensus size: 40
61299970 CGAATACACG
* * * *
61299980 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
61300020 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
61300060 TCACTAGCACGAATGCTCTTC-GAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61300099 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61300139 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61300179 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61300218 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61300258 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
61300298 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
61300337 TC
1 TC
61300339 GTCGAGACCT
Statistics
Matches: 296, Mismatches: 21, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
39 75 0.25
40 221 0.75
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:61300113 original size:79 final size:80
Alignment explanation
Indices: 61299980--61300338 Score: 562
Period size: 79 Copynumber: 4.5 Consensus size: 80
61299970 CGAATACACG
* * * * * * * * *
61299980 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * *
61300045 TTTAGCACGGATATA
66 CTTAGCCCGGATACA
*
61300060 TCACTAGCACGAATGCTCTTC-GAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
61300124 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
61300139 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
61300203 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
61300218 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
61300283 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* *
61300298 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGAT-CATC
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATC
61300339 GTCGAGACCT
Statistics
Matches: 261, Mismatches: 16, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
79 151 0.58
80 110 0.42
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:61300196 original size:119 final size:119
Alignment explanation
Indices: 61299980--61300338 Score: 558
Period size: 119 Copynumber: 3.0 Consensus size: 119
61299970 CGAATACACG
* * * * * * * *
61299980 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * * * *
61300045 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
*
61300099 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
61300164 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
*
61300218 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
*
61300283 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGAT-CA
66 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
61300337 TC
1 TC
61300339 GTCGAGACCT
Statistics
Matches: 222, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
119 208 0.94
120 14 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
Found at i:61300461 original size:38 final size:38
Alignment explanation
Indices: 61300392--61300466 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
61300382 GAATTTTAAT
*
61300392 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
61300430 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
61300467 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:61302676 original size:993 final size:993
Alignment explanation
Indices: 61300602--61303569 Score: 5871
Period size: 990 Copynumber: 3.0 Consensus size: 993
61300592 CTTTAAGTCG
61300602 TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
1 TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
61300667 ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
66 ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
61300732 GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
131 GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
61300797 CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
196 CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
61300862 TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
261 TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
61300927 TTCAATTGTC--AAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
326 TTCAATTGTCAAAAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
61300990 ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACGCCC
391 ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACGCCC
61301055 CGTACCCGAGACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGC
456 CGTACCCGAGACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGC
61301120 AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTTAAAAATCATAACT
521 AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTTAAAAATCATAACT
61301185 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATG-CCATCT
586 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATGCCCATCT
61301249 ACATA-TTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
651 ACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
61301313 GTTACAGGGATCGACTACACTGACCTTTGCGC-ATACGACTTGGATATCTCCCTGTACAGAGCTT
716 GTTACAGGGATCGACTACACTGACCTTTGCGCAATACGACTTGGATATCTCCCTGTACAGAGCTT
61301377 CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
781 CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
61301442 GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
846 GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
61301507 TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
911 TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
61301572 TTCTTCCACATGAAAACC
976 TTCTTCCACATGAAAACC
61301590 TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
1 TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
61301655 ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
66 ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
61301720 GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
131 GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
61301785 CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
196 CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
61301850 TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
261 TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
61301915 TTCAATTGTCAAAAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
326 TTCAATTGTCAAAAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
61301980 ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACGCCC
391 ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACGCCC
61302045 CGTACCCGAGACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGC
456 CGTACCCGAGACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGC
61302110 AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTTAAAAATCATAACT
521 AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTTAAAAATCATAACT
61302175 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATGCCCATCT
586 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATGCCCATCT
61302240 ACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
651 ACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
61302305 GTTACAGGGATCGACTACACTGACCTTTGCGCAATACGACTTGGATATCTCCCTGTACAGAGCTT
716 GTTACAGGGATCGACTACACTGACCTTTGCGCAATACGACTTGGATATCTCCCTGTACAGAGCTT
61302370 CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
781 CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
61302435 GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
846 GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
61302500 TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
911 TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
61302565 TTCTTCCACATGAAAACC
976 TTCTTCCACATGAAAACC
61302583 TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
1 TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
61302648 ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
66 ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
61302713 GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
131 GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
61302778 CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
196 CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
61302843 TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
261 TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
61302908 TTCAATTGTCAAAAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
326 TTCAATTGTCAAAAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
61302973 ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAAT-AAATTGTAACGCCC
391 ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACGCCC
61303037 CGTACCCGAGACCGTTGCCGGAGTCGGACACGA-GGGTTCACAGACTAAATTCGCTTACTATCGC
456 CGTACCCGAGACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGC
61303101 AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTT-AAAATCATAACT
521 AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTTAAAAATCATAACT
61303165 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATGCCCATCT
586 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATGCCCATCT
61303230 ACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
651 ACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
61303295 GTTACAGGGATCGACTACACTGACCTTTGCGCAATACGACTTGGATATCTCCCTGTACAGAGCTT
716 GTTACAGGGATCGACTACACTGACCTTTGCGCAATACGACTTGGATATCTCCCTGTACAGAGCTT
61303360 CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
781 CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
61303425 GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
846 GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
61303490 TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
911 TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
*
61303555 TTCTTCCATATGAAA
976 TTCTTCCACATGAAA
61303570 GTGGATTCAT
Statistics
Matches: 1974, Mismatches: 1, Indels: 8
1.00 0.00 0.00
Matches are distributed among these distances:
988 335 0.17
990 722 0.37
991 94 0.05
992 138 0.07
993 685 0.35
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (993 bp):
TAAATATCATTCCAATCTAATACATGTATGCTTCTTTTGCTAAACTTTCAGCTCAATAAGCAATC
ACACCAAAGCATATATCCCCAATCTCTTCCTTTGTTCATTTCTCTAATAACCTTATTATGATAAG
GACAATGGGACATCATTCATATATCATACATGTATATCATGGCATTTTAAGTTAAATACCAAATT
CAATTACTCAAAACTTACTTATGTTATACCCTTCTCAATATTGACACATCATAAGCATGTCTCAG
TCCTCTCCATTCCATCTGCTACAGCTCGATCGGGATCGGAATTCATTACAATAAATAAACACATT
TTCAATTGTCAAAAAATCACCACACTATCAAATATTCACATAATGGCATGTATAGCTAGACCCAA
ACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACGCCC
CGTACCCGAGACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGC
AGTCCATTTTAAAAATTTCCAGACAGCTGGCTAACTGTGTCGCTGTCACCTTAAAAATCATAACT
TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTAAAACTAGACTCATATGCCCATCT
ACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
GTTACAGGGATCGACTACACTGACCTTTGCGCAATACGACTTGGATATCTCCCTGTACAGAGCTT
CAATACTGATACCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGCAT
GACTCCTAATTATCTCTGGTTAATTTATAATTAATTTCCAAAATCGGAACAGGGAATCCAGAAAC
TGTTCTGGCCCTGTTTCATGAAAACCTAATTATCTCTTAACATACCACTCATATGACCGTTTCGT
TTCTTCCACATGAAAACC
Found at i:61304938 original size:47 final size:47
Alignment explanation
Indices: 61304875--61305326 Score: 678
Period size: 47 Copynumber: 9.6 Consensus size: 47
61304865 CCCTTCGGGA
* * *
61304875 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
61304922 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61304969 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61305016 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61305063 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61305110 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
61305157 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61305204 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61305251 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61305300 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
61305327 TATTCAAATA
Statistics
Matches: 378, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 329 0.87
48 1 0.00
49 47 0.12
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:61305165 original size:22 final size:22
Alignment explanation
Indices: 61305138--61305213 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
61305128 GTTCACATTC
61305138 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
61305160 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
61305184 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
61305207 ATCACAT
1 ATCACAT
61305214 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:61306772 original size:85 final size:85
Alignment explanation
Indices: 61306594--61306772 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
61306584 TATTTTATTG
*
61306594 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
61306659 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
61306679 CTCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
61306744 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
61306764 CCCGTGCTC
1 CCCATGCTC
61306773 ATGGCCGGCC
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:61311937 original size:53 final size:53
Alignment explanation
Indices: 61311874--61312100 Score: 154
Period size: 53 Copynumber: 4.2 Consensus size: 53
61311864 ATATTAAGGA
* * * *
61311874 TACACTGGTATCTTTCCTTTTTAAACTTACCATTTCCATGTCTTGGCATGGTCT
1 TACA-TGGTATCTTTCCTTTATAAACTCACCATTGCCATGCCTTGGCATGGTCT
* * *
61311928 TACGTGGTATCCTTGCC-TTATGAACTCACCATTGCCATGCCTTGGCATGGTCT
1 TACATGGTAT-CTTTCCTTTATAAACTCACCATTGCCATGCCTTGGCATGGTCT
* * ** * * * * *
61311981 TACATGGGATCTTTACC-TTATCGTAGTTTATCAATGCCATGTCTTGACATGGTCT
1 TACATGGTATCTTT-CCTTTAT--AAACTCACCATTGCCATGCCTTGGCATGGTCT
* * * * * * *
61312036 TACATGATTTCCTTGCCTTGTA-GAACTTACCAATGCCATGCCTTGACATGGTCT
1 TACATGGTAT-CTTTCCTT-TATAAACTCACCATTGCCATGCCTTGGCATGGTCT
*
61312090 TACTTGGTATC
1 TACATGGTATC
61312101 CTTAAACCTT
Statistics
Matches: 136, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
52 3 0.02
53 52 0.38
54 42 0.31
55 33 0.24
56 4 0.03
57 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (53 bp):
TACATGGTATCTTTCCTTTATAAACTCACCATTGCCATGCCTTGGCATGGTCT
Found at i:61314382 original size:21 final size:20
Alignment explanation
Indices: 61314358--61314400 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
61314348 TAGGAGAGCG
*
61314358 AAAGGAACGAGAAACGGGCCA
1 AAAGCAACGA-AAACGGGCCA
* *
61314379 AAAGCAGCGAAAATGGGCCA
1 AAAGCAACGAAAACGGGCCA
61314399 AA
1 AA
61314401 GTACGAAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.49, C:0.19, G:0.30, T:0.02
Consensus pattern (20 bp):
AAAGCAACGAAAACGGGCCA
Found at i:61330750 original size:38 final size:39
Alignment explanation
Indices: 61330708--61330793 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 39
61330698 GACCAGCCCA
* *
61330708 ACACACCA-TGTGGGGATAGAATCGACCCA-CCAAACCCT
1 ACACACCAGTATGGGGATAGAATCAACCCATCC-AACCCT
*
61330746 ACACACCAAGTATGGGGATATAATCAACCCATCCAACCCT
1 ACACACC-AGTATGGGGATAGAATCAACCCATCCAACCCT
61330786 ACACACCA
1 ACACACCA
61330794 CAAGGTACCG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
38 7 0.17
39 2 0.05
40 31 0.74
41 2 0.05
ACGTcount: A:0.37, C:0.35, G:0.14, T:0.14
Consensus pattern (39 bp):
ACACACCAGTATGGGGATAGAATCAACCCATCCAACCCT
Found at i:61330765 original size:40 final size:40
Alignment explanation
Indices: 61330718--61330793 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
61330708 ACACACCATG
*
61330718 TGGGGATAGAATCGACCCA-CCAAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCATCC-AACCCTACACACCAAGTA
*
61330758 TGGGGATATAATCAACCCATCCAACCCTACACACCA
1 TGGGGATAGAATCAACCCATCCAACCCTACACACCA
61330794 CAAGGTACCG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.37, C:0.34, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:61331551 original size:41 final size:41
Alignment explanation
Indices: 61331494--61331576 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
61331484 TAGTGTGGTG
*
61331494 TTATCTTCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
1 TTATCTCCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
* *
61331535 TTATCTCCGGCCCTTCCAACTCGAGCTATTGTATAGACCTA
1 TTATCTCCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
61331576 T
1 T
61331577 AAGAAATGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (41 bp):
TTATCTCCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
Found at i:61332832 original size:43 final size:42
Alignment explanation
Indices: 61332684--61332832 Score: 106
Period size: 43 Copynumber: 3.5 Consensus size: 42
61332674 CCTGATTTCA
* * * *
61332684 TCACTGGCAATAAGCCTGCTAAACCTTTAAGTCCAATATCATT
1 TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGATATCA-T
* ** *** *
61332727 TCACCGGCATTACGCCTGCTAG-GGTCGGAGCCCGATAAT-AT
1 TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGAT-ATCAT
* *
61332768 TCACCAGC-TTAAAGCTTGCTAGACCTTTAAGTCCGATATCAT
1 TCACCGGCATT-AAGCCTGCTAGACCTTTAAGTCCGATATCAT
* *
61332810 CTCACTGGCATTACGCCTGCTAG
1 -TCACCGGCATTAAGCCTGCTAG
61332833 GCTCGGAGCC
Statistics
Matches: 76, Mismatches: 24, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
40 2 0.03
41 19 0.25
42 18 0.24
43 35 0.46
44 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (42 bp):
TCACCGGCATTAAGCCTGCTAGACCTTTAAGTCCGATATCAT
Found at i:61334752 original size:14 final size:15
Alignment explanation
Indices: 61334723--61334752 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61334713 AAAAATTAAG
61334723 ACATGATACTTTCAC
1 ACATGATACTTTCAC
61334738 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
61334752 A
1 A
61334753 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:61337112 original size:24 final size:24
Alignment explanation
Indices: 61337085--61337160 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
61337075 ATTCACCCTA
* *
61337085 AAACCCTAATCTAAAGTTACTTAC
1 AAACCCTAATATAAAGTTAATTAC
* *
61337109 AAACCCTAATATGAAGTTAATTGC
1 AAACCCTAATATAAAGTTAATTAC
61337133 AAACCC-----TAAAGTTAATTAC
1 AAACCCTAATATAAAGTTAATTAC
61337152 AAACCCTAA
1 AAACCCTAA
61337161 AGTGAGTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 17 0.40
24 26 0.60
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (24 bp):
AAACCCTAATATAAAGTTAATTAC
Found at i:61337146 original size:19 final size:19
Alignment explanation
Indices: 61337122--61337163 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
61337112 CCCTAATATG
*
61337122 AAGTTAATTGCAAACCCTA
1 AAGTTAATTACAAACCCTA
61337141 AAGTTAATTACAAACCCTA
1 AAGTTAATTACAAACCCTA
61337160 AAGT
1 AAGT
61337164 GAGTTAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (19 bp):
AAGTTAATTACAAACCCTA
Found at i:61338883 original size:40 final size:40
Alignment explanation
Indices: 61338778--61338923 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
61338768 GCTACTCGTT
*
61338778 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
61338818 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
61338858 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
61338899 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61338924 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:61345562 original size:39 final size:39
Alignment explanation
Indices: 61345485--61345710 Score: 247
Period size: 40 Copynumber: 5.9 Consensus size: 39
61345475 GACATAGCGA
61345485 TAGTAA-TCGCAC-AATGCC--CGGACTT-ACCCGG---
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
61345516 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
61345555 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGATT
* * *
61345595 TAGTAACTCGCAC-AATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
* ** *
61345633 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGATT
* * * *
61345673 TGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCCGGA
61345711 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 17
0.85 0.07 0.09
Matches are distributed among these distances:
31 6 0.04
32 6 0.04
33 6 0.04
35 7 0.04
36 6 0.04
38 25 0.15
39 43 0.25
40 59 0.35
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
Found at i:61345594 original size:40 final size:40
Alignment explanation
Indices: 61345516--61345710 Score: 256
Period size: 40 Copynumber: 5.0 Consensus size: 40
61345506 ACTTACCCGG
*
61345516 TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
*
61345555 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
*
61345595 TAGTAACTCGCAC-AATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
* * *
61345633 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATT
* * *
61345673 TGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
61345711 CATCATTCAA
Statistics
Matches: 139, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
38 25 0.18
39 44 0.32
40 59 0.42
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
Found at i:61345629 original size:78 final size:78
Alignment explanation
Indices: 61345516--61345710 Score: 248
Period size: 78 Copynumber: 2.5 Consensus size: 78
61345506 ACTTACCCGG
* * *
61345516 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG
1 TAGTAACTCGCAC-AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GG
*
61345581 A-CTTAACCCGGATT
64 ATCTTAACCCGGATA
*
61345595 TAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGAT
1 TAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGAT
**
61345660 CTTAGTCCGGATA
66 CTTAACCCGGATA
* * * *
61345673 TGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAATGCCTTCGGG-CTTAGCCCGGA
61345711 CATCATTCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
77 3 0.03
78 59 0.58
79 29 0.28
80 11 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
TAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGAT
CTTAACCCGGATA
Found at i:61353604 original size:79 final size:80
Alignment explanation
Indices: 61353480--61353742 Score: 340
Period size: 79 Copynumber: 3.3 Consensus size: 80
61353470 GCTCCTCGTT
* *
61353480 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
61353543 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
61353559 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
61353623 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* * * * **
61353638 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * * *
61353701 GATATGGTCACTTAGCA
65 GATTTAGTAAC-TCGCA
*
61353718 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
61353743 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
78 26 0.16
79 101 0.61
80 36 0.22
81 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:61353615 original size:39 final size:40
Alignment explanation
Indices: 61353480--61353742 Score: 340
Period size: 40 Copynumber: 6.7 Consensus size: 40
61353470 GCTCCTCGTT
* *
61353480 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
61353519 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
61353559 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
61353599 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
61353638 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
61353677 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
61353718 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
61353743 CATCATTCAA
Statistics
Matches: 203, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 88 0.43
40 100 0.49
41 13 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:61364443 original size:20 final size:20
Alignment explanation
Indices: 61364418--61364455 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61364408 GCCCCACGGG
*
61364418 CAGGCCAAACGGGCATGTCC
1 CAGGCCAAACAGGCATGTCC
*
61364438 CAGGCCACACAGGCATGT
1 CAGGCCAAACAGGCATGT
61364456 GCTCCTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (20 bp):
CAGGCCAAACAGGCATGTCC
Found at i:61367173 original size:46 final size:46
Alignment explanation
Indices: 61367120--61367295 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
61367110 TATTTGGGCA
*
61367120 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
61367166 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
61367213 TCCGAACTCGTTGAGTTGATTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
61367259 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61367296 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:61367275 original size:93 final size:93
Alignment explanation
Indices: 61367116--61367287 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
61367106 GGGATATTTG
* * *
61367116 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
61367181 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
61367209 GGCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
61367274 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
61367288 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:61368669 original size:38 final size:38
Alignment explanation
Indices: 61368618--61368693 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
61368608 ATTCAAAAAA
61368618 AATGTGAAGCTGGAATAAAGGAAAAGGAAGATCAGTGC
1 AATGTGAAGCTGGAATAAAGGAAAAGGAAGATCAGTGC
61368656 AATGTGAAGCTGGAATAAAGGAAAAGGAAGATCAGTGC
1 AATGTGAAGCTGGAATAAAGGAAAAGGAAGATCAGTGC
61368694 GAAAATAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.32, T:0.16
Consensus pattern (38 bp):
AATGTGAAGCTGGAATAAAGGAAAAGGAAGATCAGTGC
Found at i:61369980 original size:15 final size:16
Alignment explanation
Indices: 61369940--61369980 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
61369930 ATTAGTGCAG
61369940 GTTGATAGAACATGGC
1 GTTGATAGAACATGGC
61369956 GTTGATAGAACATGGC
1 GTTGATAGAACATGGC
*
61369972 -TTTATAGAA
1 GTTGATAGAA
61369981 AACACACGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (16 bp):
GTTGATAGAACATGGC
Found at i:61371039 original size:25 final size:26
Alignment explanation
Indices: 61371010--61371060 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
61371000 TAGTTAAGCA
* *
61371010 TTATGAATGTGTCATAAATA-ATATT
1 TTATGAACGTATCATAAATACATATT
61371035 TTATGAACGTATCATAAATACATATT
1 TTATGAACGTATCATAAATACATATT
61371061 AGGAATGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (26 bp):
TTATGAACGTATCATAAATACATATT
Found at i:61373159 original size:15 final size:16
Alignment explanation
Indices: 61373134--61373164 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
61373124 TATTTCATTT
61373134 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
61373150 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
61373165 TGATATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:61373222 original size:15 final size:15
Alignment explanation
Indices: 61373202--61373257 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
61373192 ATTCAATATT
61373202 AATATTTTAATAATA
1 AATATTTTAATAATA
*
61373217 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
61373236 AATATATTAATAATA
1 AATATTTTAATAATA
61373251 AAT-TTTT
1 AATATTTT
61373258 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 14 0.42
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:61373231 original size:19 final size:19
Alignment explanation
Indices: 61373204--61373240 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
61373194 TCAATATTAA
*
61373204 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
61373223 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
61373241 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:61376228 original size:43 final size:42
Alignment explanation
Indices: 61376157--61376302 Score: 147
Period size: 43 Copynumber: 3.5 Consensus size: 42
61376147 TGTGTTCTCG
* ** *
61376157 TGTAAGACCATGTCTGGAATGTTGGCATCGATATGTGATTACG
1 TGTAAGACCATGTCTGGGA-CATGGCATCGATATGTGATTACA
* *
61376200 TGTAAGACCATGTCTGGGACATCAGCATC-ATATTTGATT-CA
1 TGTAAGACCATGTCTGGGACAT-GGCATCGATATGTGATTACA
* *
61376241 TGTAAG-CCCTGTCTAGGACAGTGGCATCGATATGTGA-TAGCA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGATATGTGATTA-CA
*
61376283 TGTAAGACCATGTCAGGGAC
1 TGTAAGACCATGTCTGGGAC
61376303 GTTGGCATTG
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
40 18 0.21
41 15 0.18
42 18 0.21
43 33 0.39
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATGTGATTACA
Found at i:61376260 original size:40 final size:43
Alignment explanation
Indices: 61376181--61376296 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 43
61376171 TGGAATGTTG
* *
61376181 GCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCA
1 GCATCGATATGTGATTACATGTAAGACCATGTCTAGGACATCA
* * *
61376224 GCATC-ATATTTGATT-CATGTAAG-CCCTGTCTAGGACAGT-G
1 GCATCGATATGTGATTACATGTAAGACCATGTCTAGGACA-TCA
61376264 GCATCGATATGTGA-TAGCATGTAAGACCATGTC
1 GCATCGATATGTGATTA-CATGTAAGACCATGTC
61376297 AGGGACGTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
40 18 0.30
41 15 0.25
42 17 0.28
43 11 0.18
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
GCATCGATATGTGATTACATGTAAGACCATGTCTAGGACATCA
Found at i:61379630 original size:13 final size:13
Alignment explanation
Indices: 61379612--61379644 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
61379602 TTAATCATAT
61379612 AAATTATAACACA
1 AAATTATAACACA
*
61379625 AAATTATAACCCA
1 AAATTATAACACA
61379638 AAATTAT
1 AAATTAT
61379645 TATTGTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (13 bp):
AAATTATAACACA
Found at i:61380204 original size:28 final size:29
Alignment explanation
Indices: 61380147--61380223 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 29
61380137 GCATCTTCGC
* *
61380147 TATCTCGCACACTAAGTG-CCTTACTTAA
1 TATCTCGCACACTAAGTGTCATTACTCAA
* *
61380175 TATCTCACACACCAAGTGTCATT-CTCAA
1 TATCTCGCACACTAAGTGTCATTACTCAA
*
61380203 TATTTCGCACACTAAGTGTCA
1 TATCTCGCACACTAAGTGTCA
61380224 CATATGTATA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 38 0.93
29 3 0.07
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (29 bp):
TATCTCGCACACTAAGTGTCATTACTCAA
Found at i:61380524 original size:19 final size:19
Alignment explanation
Indices: 61380500--61380537 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
61380490 TTCTTGATTA
61380500 TCTCAATCTAAATAATATC
1 TCTCAATCTAAATAATATC
61380519 TCTCAATCTAAATAATATC
1 TCTCAATCTAAATAATATC
61380538 AAAATTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
TCTCAATCTAAATAATATC
Found at i:61382540 original size:22 final size:22
Alignment explanation
Indices: 61382512--61382554 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
61382502 TGCTGTAGAC
*
61382512 AGGACAATACATAGCCATAAAT
1 AGGACAACACATAGCCATAAAT
*
61382534 AGGACAACACATAGCCGTAAA
1 AGGACAACACATAGCCATAAA
61382555 CATCACAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.21, G:0.16, T:0.14
Consensus pattern (22 bp):
AGGACAACACATAGCCATAAAT
Found at i:61382787 original size:22 final size:22
Alignment explanation
Indices: 61382759--61382823 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
61382749 GCAAATACGT
*
61382759 TTGGCACACAACCATAATCAGG
1 TTGGCACAAAACCATAATCAGG
* * * *
61382781 TTGGCACAGAGCTAT-ATGTAGG
1 TTGGCACAAAACCATAAT-CAGG
*
61382803 TTGGCGCAAAACCATAATCAG
1 TTGGCACAAAACCATAATCAG
61382824 AATAATTGGT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAACCATAATCAGG
Found at i:61383026 original size:41 final size:41
Alignment explanation
Indices: 61382969--61383080 Score: 143
Period size: 41 Copynumber: 2.7 Consensus size: 41
61382959 GCCACCGGTG
* * *
61382969 GATCCGCGGTCGTCAAGCAACCATGCGATCCTTAATCGGCA
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGCA
* * **
61383010 GATCCACGGTCGTCAAGCAACCATGCAATCCTCAATTAGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGCA
* *
61383051 GATCCACGATCATCAAGCAACCATGCGATC
1 GATCCACGGTCGTCAAGCAACCATGCGATC
61383081 TGTAATTTCT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.20
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGCA
Found at i:61383411 original size:27 final size:26
Alignment explanation
Indices: 61383381--61383628 Score: 123
Period size: 27 Copynumber: 9.2 Consensus size: 26
61383371 GCAAGCCAAT
61383381 GGTATTTCTGTAATTTTCTAAATCAAG
1 GGTATTT-TGTAATTTTCTAAATCAAG
* * * *
61383408 GGTATTTGGATAATTTTCCAAATTAGG
1 GGTATTTTG-TAATTTTCTAAATCAAG
**
61383435 GGTATTTTGGTAATTTTAC-AAATGTAG
1 GGTATTTT-GTAATTTT-CTAAATCAAG
* * *
61383462 GGTATTTCGGTAATTTTAC-AAGT-GAG
1 GGTATTT-TGTAATTTT-CTAAATCAAG
* * * ** *
61383488 AGTATTTCGGTAATTTTATAGGTCAAA
1 GGTATTT-TGTAATTTTCTAAATCAAG
* *
61383515 GGTATTTCGATAA-TTTCACAAATCAAG
1 GGTATTTTG-TAATTTTC-TAAATCAAG
*
61383542 GGTATTTTGGTAATTTTAC-AAA-CTAGG
1 GGTATTTT-GTAATTTT-CTAAATC-AAG
*
61383569 GGTATTTTGGTAATTTTTCT-AATCGAG
1 GGTATTTT-GTAA-TTTTCTAAATCAAG
* *
61383596 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTT-GTAATTTTCTAAATCAAG
61383623 GGTATT
1 GGTATT
61383629 CAGTAATTCT
Statistics
Matches: 175, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
26 32 0.18
27 131 0.75
28 11 0.06
29 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (26 bp):
GGTATTTTGTAATTTTCTAAATCAAG
Found at i:61383439 original size:54 final size:53
Alignment explanation
Indices: 61383381--61383628 Score: 177
Period size: 54 Copynumber: 4.6 Consensus size: 53
61383371 GCAAGCCAAT
61383381 GGTATTTCT-GTAATTTTCTAAATCAAGGGTATTTGGATAATTTTCCAAATTAGG
1 GGTATTT-TGGTAATTTTCTAAATCAAGGGTATTTGG-TAATTTTCCAAATTAGG
** * * *
61383435 GGTATTTTGGTAATTTTAC-AAATGTAGGGTATTTCGGTAATTTTACAAGTGA-G
1 GGTATTTTGGTAATTTT-CTAAATCAAGGGTATTT-GGTAATTTTCCAAATTAGG
* * * ** * * * *
61383488 AGTATTTCGGTAATTTTATAGGTCAAAGGTATTTCGATAA-TTTCACAAATCAAG
1 GGTATTTTGGTAATTTTCTAAATCAAGGGTATTT-GGTAATTTTC-CAAATTAGG
* * * *
61383542 GGTATTTTGGTAATTTTAC-AAA-CTAGGGGTATTTTGGTAATTTTTCTAA-TCGAG
1 GGTATTTTGGTAATTTT-CTAAATC-AAGGGTA-TTTGGTAATTTTCCAAATTAG-G
* *
61383596 GGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 GGTATTTTGGTAATTTTCTAAATCAAGGGTATT
61383629 CAGTAATTCT
Statistics
Matches: 149, Mismatches: 32, Indels: 27
0.72 0.15 0.13
Matches are distributed among these distances:
52 3 0.02
53 40 0.27
54 96 0.64
55 10 0.07
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
GGTATTTTGGTAATTTTCTAAATCAAGGGTATTTGGTAATTTTCCAAATTAGG
Found at i:61383635 original size:134 final size:132
Alignment explanation
Indices: 61383325--61383636 Score: 326
Period size: 134 Copynumber: 2.3 Consensus size: 132
61383315 TCACCCTACA
* * * * *
61383325 AGGGTGTTTTGGTAAATCTATAAACCAAGGGATTTTCGGTAATTTTGCAAGCCAATGGTATTTCT
1 AGGGTATTTTGGT-AAT-TTTAAACCAAGGG-TATTCGGTAATTTTACAAGCCAAAGGTATTTCT
* * *
61383390 GTAATTTTCTAAATCAAGGGTATTTGGATAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACA
63 GTAATTTTCCAAATCAAGGGTATTTGGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
61383455 AATGT
128 AATGT
* *** * * * *
61383460 AGGGTATTTCGGTAATTTTACAAGTGAGAGTATTTCGGTAATTTTATAGGTCAAAGGTATTTC-G
1 AGGGTATTTTGGTAATTTTA-AACCAAGGGTA-TTCGGTAATTTTACAAGCCAAAGGTATTTCTG
*
61383524 ATAA-TTTCACAAATCAAGGGTATTTTGG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTT
64 -TAATTTTC-CAAATCAAGGGTA-TTTGGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTA
*
61383587 CTAATCG-
126 CAAAT-GT
*
61383594 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCAGTAATT
1 AGGGTATTTTGGTAA-TTT-TAAACCAAGGGTATTCGGTAATT
61383637 CTACCCTAAA
Statistics
Matches: 145, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
133 9 0.06
134 107 0.74
135 27 0.19
136 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (132 bp):
AGGGTATTTTGGTAATTTTAAACCAAGGGTATTCGGTAATTTTACAAGCCAAAGGTATTTCTGTA
ATTTTCCAAATCAAGGGTATTTGGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAT
GT
Found at i:61386050 original size:39 final size:41
Alignment explanation
Indices: 61385949--61386132 Score: 206
Period size: 40 Copynumber: 4.6 Consensus size: 41
61385939 TTGAATGATG
* *
61385949 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
61385989 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
61386029 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
61386068 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
61386108 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61386133 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
39 49 0.39
40 65 0.51
41 12 0.09
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:61386085 original size:79 final size:80
Alignment explanation
Indices: 61385949--61386132 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 80
61385939 TTGAATGATG
*
61385949 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
61386013 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
61386028 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
61386091 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* * *
61386108 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
61386133 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 71 0.78
80 19 0.21
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:61386150 original size:79 final size:78
Alignment explanation
Indices: 61385950--61386165 Score: 197
Period size: 79 Copynumber: 2.7 Consensus size: 78
61385940 TGAATGATGT
** * * * *
61385950 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATT
*
61386013 TGTGCGAGATACTAATT
62 TGTGCGAGATACTAATA
** * *
61386030 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGT
*
61386095 GCGAGTTACT-ATAA
65 GCGAGATACTAAT-A
* * * *
61386109 CCGGGCTATGTCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
61386166 TACGTGATTT
Statistics
Matches: 115, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
78 18 0.16
79 78 0.68
80 19 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:61388936 original size:47 final size:47
Alignment explanation
Indices: 61388870--61389041 Score: 170
Period size: 47 Copynumber: 3.7 Consensus size: 47
61388860 TGGATGCGAA
* *
61388870 CGTCTGAACTCGTTGAGTTGAATCCGAGTTCATGAAATGTAACTAGG
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGG
* * * * *
61388917 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTA-ACTAGG
* * * * *
61388963 TGTCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGG
* * *
61389010 CATCCGAGCTCGTTAAGTTGAGTCCGAGTTCA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCA
61389042 CTTATGGATG
Statistics
Matches: 97, Mismatches: 23, Indels: 10
0.75 0.18 0.08
Matches are distributed among these distances:
45 1 0.01
46 34 0.35
47 61 0.63
48 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGG
Found at i:61388984 original size:46 final size:46
Alignment explanation
Indices: 61388836--61389094 Score: 224
Period size: 46 Copynumber: 5.6 Consensus size: 46
61388826 ATCGAGCTCA
*
61388836 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCG
* * * * * ** *
61388882 TTGAGTTGAATCCGAGTTCA-TGAAATGTA-ACTAGGCGTCCGAACTCG
1 TTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ATGTCTGAACTCG
*
61388929 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCG
* * * * *
61388975 TTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCTGAACTCG
* * *
61389022 TTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCG
* *
61389068 TTGAGTTGAGCCCGAGTTCGCTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
61389095 GCGAGTTACA
Statistics
Matches: 168, Mismatches: 31, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 4 0.02
46 85 0.51
47 61 0.36
48 4 0.02
50 5 0.03
51 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCG
Found at i:61389003 original size:93 final size:93
Alignment explanation
Indices: 61388836--61389087 Score: 405
Period size: 93 Copynumber: 2.7 Consensus size: 93
61388826 ATCGAGCTCA
* *
61388836 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAATCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
* *
61388901 ATGAAATGTAACTAGGCGTCCGAACTCG
66 GTGAAATGTAACTAGGCATCCGAACTCG
*
61388929 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCATTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
* *
61388994 GTGAGATGTAACTAGGCATCCGAGCTCG
66 GTGAAATGTAACTAGGCATCCGAACTCG
* * * *
61389022 TTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAGCTCGTTGAGTTGAGCCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
61389087 G
66 G
61389088 CTTATGGGCG
Statistics
Matches: 147, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 147 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
GTGAAATGTAACTAGGCATCCGAACTCG
Found at i:61389126 original size:16 final size:16
Alignment explanation
Indices: 61389105--61389135 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
61389095 GCGAGTTACA
61389105 TGGTAGCTTGGCTACG
1 TGGTAGCTTGGCTACG
61389121 TGGTAGCTTGGCTAC
1 TGGTAGCTTGGCTAC
61389136 ATATGTAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.19, G:0.35, T:0.32
Consensus pattern (16 bp):
TGGTAGCTTGGCTACG
Found at i:61390964 original size:50 final size:49
Alignment explanation
Indices: 61390802--61390976 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 49
61390792 GACCATATTA
* * *
61390802 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGA--
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAGATG
* *
61390850 CGAGAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTACGAGATG
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAGATG
* *
61390898 T--G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATG
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAGATG
*
61390944 TGAGAGCTAGTGTAAGACCATGTTTGGGACATG
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATG
61390977 ATTTCGATAG
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
44 9 0.08
45 16 0.15
46 26 0.25
47 14 0.13
48 16 0.15
49 1 0.01
50 24 0.23
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (49 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAGATG
Found at i:61396043 original size:20 final size:20
Alignment explanation
Indices: 61396018--61396055 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
61396008 GTAGACTTTA
61396018 CCTATCCTTGTTAAGCATGG
1 CCTATCCTTGTTAAGCATGG
61396038 CCTATCCTTGTTAAGCAT
1 CCTATCCTTGTTAAGCAT
61396056 ATCCACACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (20 bp):
CCTATCCTTGTTAAGCATGG
Found at i:61396728 original size:40 final size:41
Alignment explanation
Indices: 61396682--61396906 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 41
61396672 GCTCCTCATT
* *
61396682 CAAATGCCTTCGGGACATAGCTCGG-TTATGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCA
* *
61396722 CAAATGCCTTCGGGACTTACCCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCA
* * *
61396762 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCA
*
61396801 CAAATGCCTTC-GGATCTTAG-TCCGGATT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCT-CGGATTATAGTAACTCGCA
* * *
61396841 CAAATGCCTTC-GGATCTTAG-TCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCT-CGGATTATAGTAAC-TCGCA
*
61396882 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCTCGGA
61396907 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 114 0.70
41 13 0.08
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCTCGGATTATAGTAACTCGCA
Found at i:61396807 original size:79 final size:77
Alignment explanation
Indices: 61396682--61396906 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 77
61396672 GCTCCTCATT
* * *
61396682 CAAATGCCTTCGGGACATAGCTCGG-TTATGGTAACTCGCACAAATGCCTTCGGGACTTACCCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGATTA--GT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG
61396746 GATTTAGTAACTCGCA
62 GATTTAGTAACTCGCA
*
61396762 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTA-CTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
61396826 ATTTAGTATCTCGCA
63 ATTTAGTAACTCGCA
* * * *
61396841 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGAT-TAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
61396905 GA
62 GA
61396907 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
78 4 0.03
79 64 0.51
80 43 0.34
81 15 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
TAGTAACTCGCA
Found at i:61404657 original size:38 final size:38
Alignment explanation
Indices: 61404584--61404802 Score: 243
Period size: 38 Copynumber: 5.7 Consensus size: 38
61404574 GCTCCTCGTT
*
61404584 CAAATGCCTTCGGGACATAGCCCGGTTATTA-TAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG--ATTAGTAACTCGCA
61404624 CAAATGCCTTCGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGA-TTAGTAACTCGCA
61404662 CAAATGCCTTCGGGACTTA-CCCGGATTAGT-ACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTAGTAACTCGCA
*
61404699 CAAATGCCTTCGG-CTTTAGCCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGAC-TTAGCCCGGATTAGTAACTCGCA
* * * **
61404737 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
61404778 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
61404803 CATCATTCAA
Statistics
Matches: 159, Mismatches: 9, Indels: 22
0.84 0.05 0.12
Matches are distributed among these distances:
35 1 0.01
36 6 0.04
37 32 0.20
38 49 0.31
39 29 0.18
40 32 0.20
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:61404728 original size:75 final size:77
Alignment explanation
Indices: 61404584--61404749 Score: 243
Period size: 75 Copynumber: 2.2 Consensus size: 77
61404574 GCTCCTCGTT
61404584 CAAATGCCTTCGGGACATAGCCCGGTTATTATAACTCGCACAAATGCCTTCGGACTTACCCGGAT
1 CAAATGCCTTCGGGACATAGCCCGG-TATTATAACTCGCACAAATGCCTTCGGACTTACCCGGAT
61404649 TTAGTAACTCGCA
65 TTAGTAACTCGCA
*
61404662 CAAATGCCTTCGGGACTTA-CCCGG-ATTAGT-ACTCGCACAAATGCCTTCGG-CTTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTATTA-TAACTCGCACAAATGCCTTCGGAC-TTA-CCCGG
*
61404723 A-TTAGTATCTCGCA
63 ATTTAGTAACTCGCA
61404737 CAAATGCCTTCGG
1 CAAATGCCTTCGG
61404750 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
74 1 0.01
75 52 0.63
76 7 0.08
77 5 0.06
78 18 0.22
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGACATAGCCCGGTATTATAACTCGCACAAATGCCTTCGGACTTACCCGGATT
TAGTAACTCGCA
Found at i:61404786 original size:115 final size:115
Alignment explanation
Indices: 61404584--61404802 Score: 277
Period size: 115 Copynumber: 1.9 Consensus size: 115
61404574 GCTCCTCGTT
61404584 CAAATGCCTTCGGGACATAGCCCGGTTATTATAACTCGCACAAATGCCTTCGGACTTACCCGGAT
1 CAAATGCCTTCGGGACATAGCCCGG-TATTATAACTCGCACAAATGCCTTCGGACTTACCCGGAT
* **
61404649 TTAGTAACTCGCACAAATGCCTTCGGGACTTA-CCCGGATTAGTACTCGCA
65 ATAGTAACTAACACAAATGCCTTCGGGACTTAGCCCGGATTAGTACTCGCA
* * *
61404699 CAAATGCCTTC-GG-CTTTAGCCCGG-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGAC-ATAGCCCGGTATTA-TAACTCGCACAAATGCCTTCGGA-CTTA-CCCG
* *
61404761 GATATGGTCACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
62 GATATAGTAAC-TAACACAAATGCCTTCGGGACTTAGCCCGGA
61404803 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
112 4 0.04
113 23 0.26
114 14 0.16
115 36 0.40
116 13 0.14
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (115 bp):
CAAATGCCTTCGGGACATAGCCCGGTATTATAACTCGCACAAATGCCTTCGGACTTACCCGGATA
TAGTAACTAACACAAATGCCTTCGGGACTTAGCCCGGATTAGTACTCGCA
Found at i:61410871 original size:40 final size:40
Alignment explanation
Indices: 61410784--61410938 Score: 234
Period size: 40 Copynumber: 4.0 Consensus size: 40
61410774 GCTAAGCGAA
61410784 GTGCGAG-TACT-AATCC-GG--AAGTCCCGAAGGCA-TT
1 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
61410818 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
61410858 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
61410898 GTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 GTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
61410938 G
1 G
61410939 AACGAGGAGC
Statistics
Matches: 112, Mismatches: 2, Indels: 8
0.92 0.02 0.07
Matches are distributed among these distances:
34 7 0.06
35 4 0.04
36 5 0.04
37 2 0.02
39 14 0.12
40 78 0.70
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
Found at i:61410956 original size:80 final size:78
Alignment explanation
Indices: 61410787--61410971 Score: 220
Period size: 80 Copynumber: 2.4 Consensus size: 78
61410777 AAGCGAAGTG
*
61410787 CGAGT-ACT-AATCCGG--AAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
1 CGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCC
**
61410848 GAAGGCATTTGTG
66 GAAGGCATTTGAA
* *
61410861 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGT
1 CGAGTGACTAAATCC-GGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGT
61410925 CCCGAAGGCATTTGAA
63 CCCGAAGGCATTTGAA
* * *
61410941 CGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CGAGTGA-CTAAATCCGGTTAAGTCCCGAAGG
61410972 TACGTGATTT
Statistics
Matches: 95, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
74 5 0.05
75 3 0.03
76 5 0.05
77 2 0.02
79 29 0.31
80 49 0.52
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCC
GAAGGCATTTGAA
Found at i:61418800 original size:40 final size:39
Alignment explanation
Indices: 61418716--61418980 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 39
61418706 TTGAATGATG
* * * * *
61418716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
61418756 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
61418796 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
61418835 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
61418875 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
61418915 TCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
* * *
61418956 -CTGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGTTAAGTCC-GAAGGCATTTG
61418981 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
39 36 0.18
40 155 0.77
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61418918 original size:80 final size:80
Alignment explanation
Indices: 61418716--61418980 Score: 340
Period size: 80 Copynumber: 3.3 Consensus size: 80
61418706 TTGAATGATG
* * * * **
61418716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* *
61418779 TTGTGCGAGATACTAAT
64 TTGTGCGAGTTACTAAA
* *
61418796 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
61418860 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
61418875 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCAGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
61418940 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
* * *
61418956 -CTGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61418981 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 59 0.36
80 101 0.62
81 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:61418998 original size:120 final size:118
Alignment explanation
Indices: 61418716--61419013 Score: 300
Period size: 119 Copynumber: 2.5 Consensus size: 118
61418706 TTGAATGATG
* * * * *
61418716 TCCGGGCTAAGTCCCGAAGGCTTTGTG--CTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTG-GAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCA
* *
61418778 TTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
62 TTTGTGCGAGATACTAAATCCGGGCTAAGCCAGAAGGCATTGGTGCGAGTTACTAAA
* ** * *
61418835 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
61418900 GTGCGAGTTACTAAATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCAGAAGGCATTGGTGCGAGTTACTA-AA
* * * * * *
61418956 -CTGGGCTATGTCCTGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTGGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
61419014 TACGTGATTT
Statistics
Matches: 148, Mismatches: 24, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
118 2 0.01
119 86 0.58
120 58 0.39
121 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCAGAAGGCATTGGTGCGAGTTACTAAA
Found at i:61430252 original size:27 final size:27
Alignment explanation
Indices: 61430214--61430348 Score: 127
Period size: 27 Copynumber: 5.1 Consensus size: 27
61430204 ATTGCATATT
* *
61430214 TGAAATGGAAGCATTTGTGGAAATCTA
1 TGAAATGAAAGCCTTTGTGGAAATCTA
* **
61430241 TGAAATGGAAGCCTTTGTGGTTTATCTA
1 TGAAATGAAAGCCTTTGTGG-AAATCTA
* **
61430269 --AAATGAAATCCTTTGTGGTGTATC--
1 TGAAATGAAAGCCTTTGTGG-AAATCTA
61430293 TGAAAT-ATAAGCCTTTGTGGAAATCTA
1 TGAAATGA-AAGCCTTTGTGGAAATCTA
*
61430320 TGAAATGAAAGCCTTTGTGGCAATCTA
1 TGAAATGAAAGCCTTTGTGGAAATCTA
61430347 TG
1 TG
61430349 GAAAGGCATG
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
25 4 0.04
26 36 0.40
27 45 0.49
28 6 0.07
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (27 bp):
TGAAATGAAAGCCTTTGTGGAAATCTA
Found at i:61430281 original size:26 final size:26
Alignment explanation
Indices: 61430216--61430339 Score: 101
Period size: 26 Copynumber: 4.7 Consensus size: 26
61430206 TGCATATTTG
* * *
61430216 AAATGGAAGCATTTGTGG-AAATCTA
1 AAATGAAAGCCTTTGTGGTATATCTA
* *
61430241 TGAAATGGAAGCCTTTGTGGTTTATCTA
1 --AAATGAAAGCCTTTGTGGTATATCTA
* * *
61430269 AAATGAAATCCTTTGTGGTGTATCTG
1 AAATGAAAGCCTTTGTGGTATATCTA
*
61430295 AAAT-ATAAGCCTTTGTGG-AAATCTA
1 AAATGA-AAGCCTTTGTGGTATATCTA
61430320 TGAAATGAAAGCCTTTGTGG
1 --AAATGAAAGCCTTTGTGG
61430340 CAATCTATGG
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
25 5 0.06
26 37 0.46
27 33 0.41
28 6 0.07
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.34
Consensus pattern (26 bp):
AAATGAAAGCCTTTGTGGTATATCTA
Done.