Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 187 of 332
Found at i:62247602 original size:80 final size:80
Alignment explanation
Indices: 62247496--62247816 Score: 500
Period size: 80 Copynumber: 4.0 Consensus size: 80
62247486 CCGAATACAT
* * * * *
62247496 CACCGGCACGAATGCTCTTTGGGACTTAGCTCGGATATAACACTAGCACGAATGCTCTTCGAGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
62247561 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
62247576 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
62247641 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* *
62247656 CACCAGCACGAATGCTCTTCGAGACTTAACCCGGTTATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
62247721 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* * * * *
62247736 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAGCA-TCGGCACAAATGCCCTTCGGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-AGCACGAATGCTCTTCGGGT
* *
62247800 CTTAGCCCGGATATAA
65 CTTAACCCGGGTATAA
62247816 C
1 C
62247817 TCACTGAACT
Statistics
Matches: 224, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
79 1 0.00
80 223 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
TTAACCCGGGTATAA
Found at i:62249738 original size:47 final size:47
Alignment explanation
Indices: 62249664--62249817 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
62249654 TCCTTCGGGA
*
62249664 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
62249711 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62249758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62249805 CTTATCACATATA
1 CTTATCACATATA
62249818 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62251685 original size:13 final size:13
Alignment explanation
Indices: 62251667--62251691 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62251657 TACTAAATTT
62251667 TCATGGATTCAAA
1 TCATGGATTCAAA
62251680 TCATGGATTCAA
1 TCATGGATTCAA
62251692 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:62260714 original size:27 final size:27
Alignment explanation
Indices: 62260684--62260861 Score: 106
Period size: 27 Copynumber: 6.6 Consensus size: 27
62260674 ATATTGAGCC
* * *
62260684 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
62260711 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
62260738 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
62260766 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * **
62260793 CGCACACTTATTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
62260820 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
62260847 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62260862 GTACAATTTA
Statistics
Matches: 121, Mismatches: 27, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
27 98 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:62260777 original size:55 final size:55
Alignment explanation
Indices: 62260684--62260861 Score: 195
Period size: 54 Copynumber: 3.3 Consensus size: 55
62260674 ATATTGAGCC
* * *
62260684 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
62260738 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
62260793 CGCACACTTATTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
62260847 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62260862 GTACAATTTA
Statistics
Matches: 102, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 55 0.54
55 44 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:62386588 original size:51 final size:50
Alignment explanation
Indices: 62386450--62386588 Score: 169
Period size: 50 Copynumber: 2.8 Consensus size: 50
62386440 AGCCGAAGCT
*
62386450 ATCT-GGTACGCATTGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-CTCACC
* * *
62386500 ATCTA-ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCA-C
1 ATCTAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTCACC
*
62386547 AGTTTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 A--TCT-AGGTACGCATAGTAGCCTGCACTTAGTACTACACA
62386589 TGCAACCTCG
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
47 2 0.03
48 3 0.04
49 2 0.03
50 39 0.51
51 30 0.39
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (50 bp):
ATCTAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTCACC
Found at i:62388673 original size:17 final size:18
Alignment explanation
Indices: 62388651--62388684 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
62388641 TTATGGGCTT
62388651 TGTGGGCCC-CATGGGCA
1 TGTGGGCCCTCATGGGCA
62388668 TGTGGGCCCTCATGGGC
1 TGTGGGCCCTCATGGGC
62388685 CTACATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.29, G:0.41, T:0.21
Consensus pattern (18 bp):
TGTGGGCCCTCATGGGCA
Found at i:62396142 original size:16 final size:17
Alignment explanation
Indices: 62396113--62396145 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
62396103 GTGGATTGTT
62396113 ATTGAATTGAAATTGAA
1 ATTGAATTGAAATTGAA
*
62396130 ATTG-ATTGGAATTGAA
1 ATTGAATTGAAATTGAA
62396146 TCAAATTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (17 bp):
ATTGAATTGAAATTGAA
Found at i:62396887 original size:45 final size:45
Alignment explanation
Indices: 62396821--62397003 Score: 269
Period size: 45 Copynumber: 4.1 Consensus size: 45
62396811 CTGTTACCGC
* * * * *
62396821 TACTGCTACTGTTACCAATTCGATACTTTATGTGTCAAATATTGT
1 TACTGTTACCGTTACCAATTCGACACTTTGTGTGTCGAATATTGT
*
62396866 TACTGTTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCAATTCGACACTTTGTGTGTCGAATATTGT
* *
62396911 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCAATTCGACACTTTGTGTGTCGAATATTGT
*
62396956 TACTGTTACCGTTACCAATTCGGA-ACTTTGTGTGTCGGATATTGT
1 TACTGTTACCGTTACCAATTC-GACACTTTGTGTGTCGAATATTGT
62397001 TAC
1 TAC
62397004 CGTACTGTTA
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 126 0.99
46 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (45 bp):
TACTGTTACCGTTACCAATTCGACACTTTGTGTGTCGAATATTGT
Found at i:62406433 original size:30 final size:31
Alignment explanation
Indices: 62406399--62406457 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
62406389 GTAAATTCTC
*
62406399 AAAATTTG-AGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGG-CTAATAGTGTAAATATGA
62406429 AAAATTTGAAGGGCTAATAGTGTAAATAT
1 AAAATTTGAAGGGCTAATAGTGTAAATAT
62406458 TTAAAGGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.31
Consensus pattern (31 bp):
AAAATTTGAAGGGCTAATAGTGTAAATATGA
Found at i:62406742 original size:11 final size:11
Alignment explanation
Indices: 62406726--62406750 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
62406716 CTATGATATT
62406726 TTATTATTTTA
1 TTATTATTTTA
62406737 TTATTATTTTA
1 TTATTATTTTA
62406748 TTA
1 TTA
62406751 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:62411425 original size:40 final size:41
Alignment explanation
Indices: 62411342--62411487 Score: 151
Period size: 40 Copynumber: 3.6 Consensus size: 41
62411332 TTGAATGATG
** * *
62411342 TCCGGGCTAAGTCTTGAAGGC-TTTGTGCTA-AGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
*
62411382 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATAA
* *
62411422 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
*
62411463 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62411488 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
39 1 0.01
40 76 0.84
41 12 0.13
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:62411501 original size:40 final size:40
Alignment explanation
Indices: 62411372--62411506 Score: 107
Period size: 40 Copynumber: 3.4 Consensus size: 40
62411362 CTTTGTGCTA
* * * **
62411372 AGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 AGTGACTATAACCGGGCTAAG-TCCCGAAGGCATTTGAACG
* **
62411412 AGAT-ACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 AG-TGACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGAACG
* *
62411452 AGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACG
1 AGTGACTATAACCGGGCTAAGTCCCGAAGGCATTTGAACG
*
62411492 AG-GAGCTATATCCGG
1 AGTGA-CTATAACCGG
62411507 TTAAATTCCG
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
39 4 0.05
40 72 0.91
41 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGACTATAACCGGGCTAAGTCCCGAAGGCATTTGAACG
Found at i:62413228 original size:45 final size:45
Alignment explanation
Indices: 62413168--62413386 Score: 323
Period size: 45 Copynumber: 4.9 Consensus size: 45
62413158 CTGAATTCAT
* * *
62413168 TCACTGGCATTATAGCCTGCTAGGCTCGAATGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
62413213 TTACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
62413258 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAG-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
62413302 TCATCAGCATTATAGCCTGCTAGGCTAAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
62413347 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
62413387 ATACTGTGTG
Statistics
Matches: 155, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 39 0.25
45 116 0.75
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:62413346 original size:89 final size:90
Alignment explanation
Indices: 62413168--62413386 Score: 341
Period size: 89 Copynumber: 2.4 Consensus size: 90
62413158 CTGAATTCAT
* * * * *
62413168 TCACTGGCATTATAGCCTGCTAGGCTCGAATGCCCGAATAGTATCTTACCGGCATTATAGCCTGC
1 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
**
62413233 TAGGCTCGAAGGCCCAAATAGTATC
66 TAGGCTAAAAGGCCCAAATAGTATC
*
62413258 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAG-ATCTCATCAGCATTATAGCCTGC
1 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
*
62413322 TAGGCTAAAAGGCCCGAATAGTATC
66 TAGGCTAAAAGGCCCAAATAGTATC
*
62413347 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATA
1 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATA
62413387 ATACTGTGTG
Statistics
Matches: 119, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
89 81 0.68
90 38 0.32
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (90 bp):
TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAGCCTGC
TAGGCTAAAAGGCCCAAATAGTATC
Found at i:62420869 original size:45 final size:45
Alignment explanation
Indices: 62420761--62421022 Score: 318
Period size: 45 Copynumber: 5.9 Consensus size: 45
62420751 CTGAATTCAT
* * * *
62420761 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGT-ATC
** *
62420803 TCACTAGCATTATAGCCTGCTAGGCTCAAATGCCAGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
** *
62420848 TTGCCGGCATTATAGCTTGCTAGGCTCAAAGGCCCA-AATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGG-CCAGAATAGTATC
* *
62420893 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
* * *
62420938 TCACTGGCATTATAGCCTGCTTGGCTCAAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
* *
62420983 TCACCGGCATTATAGCCTGCTAGACTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATA
62421023 ATATTGTACG
Statistics
Matches: 189, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
42 9 0.05
43 16 0.08
44 6 0.03
45 154 0.81
46 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
Found at i:62423098 original size:9 final size:9
Alignment explanation
Indices: 62423086--62423162 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
62423076 TTTGATAAAC
62423086 ATGATATGT
1 ATGATATGT
*
62423095 ATGATATGCAC
1 ATGATATG--T
62423106 ATGATATGT
1 ATGATATGT
*
62423115 ATGATATGCAG
1 ATGATATG--T
*
62423126 ATGACATGT
1 ATGATATGT
*
62423135 ATGATATGCAC
1 ATGATATG--T
62423146 ATGATATGT
1 ATGATATGT
62423155 ATGATATG
1 ATGATATG
62423163 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:62423111 original size:11 final size:11
Alignment explanation
Indices: 62423095--62423166 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
62423085 CATGATATGT
62423095 ATGATATGCAC
1 ATGATATGCAC
*
62423106 ATGATATG--T
1 ATGATATGCAC
*
62423115 ATGATATGCAG
1 ATGATATGCAC
* *
62423126 ATGACATG--T
1 ATGATATGCAC
62423135 ATGATATGCAC
1 ATGATATGCAC
*
62423146 ATGATATG--T
1 ATGATATGCAC
62423155 ATGATATGCAC
1 ATGATATGCAC
62423166 A
1 A
62423167 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:62423174 original size:20 final size:20
Alignment explanation
Indices: 62423084--62423166 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
62423074 ATTTTGATAA
62423084 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62423104 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
62423124 AGATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
62423144 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62423164 ACA
1 ACA
62423167 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:62423246 original size:24 final size:24
Alignment explanation
Indices: 62423219--62423386 Score: 225
Period size: 24 Copynumber: 7.0 Consensus size: 24
62423209 GAGGAAGTGC
* *
62423219 AAAAGGGCTTATGCCCTAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
62423243 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
62423267 AAAAGGGCTTATGCCCTAGCTATT
1 AAAAGGGCTTATGCCCCAGTTATT
62423291 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
62423315 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
62423338 AAAAAAAGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
62423363 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
62423387 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
23 28 0.22
24 72 0.56
25 21 0.16
26 8 0.06
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:62423614 original size:31 final size:31
Alignment explanation
Indices: 62423579--62423642 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
62423569 CGTTTACCGT
62423579 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
62423610 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
62423641 AA
1 AA
62423643 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:62424951 original size:47 final size:47
Alignment explanation
Indices: 62424898--62424993 Score: 149
Period size: 47 Copynumber: 2.0 Consensus size: 47
62424888 AAAATTTTCT
* *
62424898 TTAACTAAGTAACTTATCTGGAAATATTAA-AGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGA-GAAAATTAAACAAGC
*
62424945 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTAAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAAATTAAACAAGC
62424992 TT
1 TT
62424994 TAAATTCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 44 0.98
48 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAAATTAAACAAGC
Found at i:62427223 original size:39 final size:39
Alignment explanation
Indices: 62427180--62427265 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
62427170 CCGGACATAT
* * *
62427180 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTACGGACCTTAAGTCCGGGTATAA
62427219 TTCCAGCACATAGCCTACGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTACGGACCTTAAGTCCGGGTATAA
62427258 TTCCAGCA
1 TTCCAGCA
62427266 TATAACCTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTACGGACCTTAAGTCCGGGTATAA
Found at i:62435109 original size:39 final size:39
Alignment explanation
Indices: 62435066--62435163 Score: 151
Period size: 39 Copynumber: 2.5 Consensus size: 39
62435056 CCGGACATAT
* * *
62435066 TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
62435105 TTCCAGCACATAGCCTGCGGAGCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
62435144 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
62435164 GTCTTTAAGC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:62439046 original size:28 final size:29
Alignment explanation
Indices: 62439014--62439074 Score: 106
Period size: 28 Copynumber: 2.1 Consensus size: 29
62439004 CACATACCTA
62439014 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCACTAGGCCCAAATCACATT
*
62439042 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCCAAATCACATT
62439071 TATA
1 TATA
62439075 GTCATGCTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCACTAGGCCCAAATCACATT
Found at i:62445908 original size:46 final size:46
Alignment explanation
Indices: 62445839--62445959 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
62445829 GTATGTGAGA
* * *
62445839 CAGTGTAAGACATGTTTGAGACATGGATCGACCACAACATAAGTGC
1 CAGTGTAAGACATGTTTGGGACATGCATCGACCACAACATAAGTCC
* * *
62445885 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGTCC
1 CAGTGTAAGACATGTTTGGGACATGCATCGACCACAACATAAGTCC
*
62445931 CAGTGTAAGACATGTTTGGGACATTCATC
1 CAGTGTAAGACATGTTTGGGACATGCATC
62445960 AGCCTTGGGA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACATGTTTGGGACATGCATCGACCACAACATAAGTCC
Found at i:62446125 original size:49 final size:49
Alignment explanation
Indices: 62446021--62446153 Score: 133
Period size: 49 Copynumber: 2.7 Consensus size: 49
62446011 CTAGTTGGGT
* * *
62446021 GTCAGTGTAAGACCTGTCTGGGATATGACATCGACACCGATAAATGAGA
1 GTCAGTGTAAGACATGTCTGGGACATGACATCGACACCGATAAATGAAA
* * * **
62446070 GCCAGTGTAAGACATGTCTGGGACATGGCATCGAC-CATGATATGTGAAA
1 GTCAGTGTAAGACATGTCTGGGACATGACATCGACAC-CGATAAATGAAA
* * * * *
62446119 GTCAGTGTAAGGCTTATTTGGGACACGACATCGAC
1 GTCAGTGTAAGACATGTCTGGGACATGACATCGAC
62446154 TTTAATGTTC
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 1 0.01
49 67 0.99
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACATGTCTGGGACATGACATCGACACCGATAAATGAAA
Found at i:62450492 original size:49 final size:50
Alignment explanation
Indices: 62450439--62450659 Score: 223
Period size: 49 Copynumber: 4.4 Consensus size: 50
62450429 TACGCATAGG
* *
62450439 AGCCTGCACTTAGTACTACCCATGCGA-CGAATTATCCGGTACATGTAGT
1 AGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACACGTAGT
* * * ** * * *
62450488 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACGCGTAGT
1 AGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACACGTAGT
* * * * * ** *
62450538 AGCTTGCACCTAGTACTACACACT-TGATCGAAGTTATCGGGTATGCATAGT
1 AGCCTGCACTTAGTACTACACA-TGCGACCGAA-TTATCCGGTACACGTAGT
*
62450589 AGCCTGCACTTAGTACTACACATGCGACC-AATAATCCGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACACGTAGT
*
62450638 AGCCTGCTCTTAGTACTACACA
1 AGCCTGCACTTAGTACTACACA
62450660 CGTGACCTCA
Statistics
Matches: 137, Mismatches: 31, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
49 58 0.42
50 44 0.32
51 35 0.26
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
AGCCTGCACTTAGTACTACACATGCGACCGAATTATCCGGTACACGTAGT
Found at i:62453209 original size:28 final size:28
Alignment explanation
Indices: 62453178--62453294 Score: 132
Period size: 28 Copynumber: 4.1 Consensus size: 28
62453168 GTGAGCATGA
*
62453178 ATAT-AATGTGATTTGGGTCGGATGGGCC
1 ATATAAATGTGA-TTGGGCCGGATGGGCC
* *
62453206 ATATAAATGAGATTGGGCCTGATGGGCC
1 ATATAAATGTGATTGGGCCGGATGGGCC
62453234 ATATGAAA-GTGAATTGGGCCGGATGGGCC
1 ATAT-AAATGTG-ATTGGGCCGGATGGGCC
* *
62453263 ATATAAATGAGATTGGGCC-TAGTGGGCC
1 ATATAAATGTGATTGGGCCGGA-TGGGCC
62453291 ATAT
1 ATAT
62453295 GCATGTATGT
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.01
28 45 0.58
29 31 0.40
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGGATGGGCC
Found at i:62453258 original size:29 final size:28
Alignment explanation
Indices: 62453190--62453294 Score: 142
Period size: 28 Copynumber: 3.7 Consensus size: 28
62453180 ATAATGTGAT
*
62453190 TTGGGTCGGATGGGCCATATAAATGAGA
1 TTGGGCCGGATGGGCCATATAAATGAGA
*
62453218 TTGGGCCTGATGGGCCATATGAAAGTGA-A
1 TTGGGCCGGATGGGCCATAT-AAA-TGAGA
62453247 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCGGATGGGCCATATAAATGAGA
*
62453275 TTGGGCC-TAGTGGGCCATAT
1 TTGGGCCGGA-TGGGCCATAT
62453295 GCATGTATGT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
27 4 0.06
28 39 0.57
29 23 0.33
30 3 0.04
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (28 bp):
TTGGGCCGGATGGGCCATATAAATGAGA
Found at i:62453278 original size:57 final size:57
Alignment explanation
Indices: 62453185--62453295 Score: 188
Period size: 57 Copynumber: 1.9 Consensus size: 57
62453175 TGAATATAAT
* *
62453185 GTGATTTGGGTCGGATGGGCCATATAAATGAGATTGGGCCT-GATGGGCCATATGAAA
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAG-TGGGCCATATGAAA
62453242 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCATATG
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCATATG
62453296 CATGTATGTA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 50 0.98
58 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.36, T:0.25
Consensus pattern (57 bp):
GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCATATGAAA
Found at i:62453950 original size:17 final size:17
Alignment explanation
Indices: 62453924--62453957 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
62453914 TATATATTTG
*
62453924 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
62453941 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
62453958 TTAAGTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:62455308 original size:24 final size:24
Alignment explanation
Indices: 62455276--62455392 Score: 128
Period size: 24 Copynumber: 4.9 Consensus size: 24
62455266 GAAATGACAT
62455276 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
***
62455300 TGGCACTATGTGTGTATATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * *
62455324 TGGCACTACGTGTGTGGATTAGCAA
1 TGGCACTATGTGTGCGGATTTG-AA
* * *
62455349 -GGCACTATGTGTGCGGGTTAGCA
1 TGGCACTATGTGTGCGGATTTGAA
*
62455372 TGGCACTATGTGTGCGAATTT
1 TGGCACTATGTGTGCGGATTT
62455393 CCTTGACTGA
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
23 1 0.01
24 74 0.96
25 2 0.03
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:62456575 original size:30 final size:30
Alignment explanation
Indices: 62456541--62456601 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62456531 TTCCCGAGCC
62456541 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
62456571 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
62456601 T
1 T
62456602 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:62457410 original size:63 final size:64
Alignment explanation
Indices: 62457330--62457512 Score: 194
Period size: 63 Copynumber: 2.8 Consensus size: 64
62457320 AGACATTATG
* * *
62457330 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAG-TACGTGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
62457393 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
62457458 AA
63 AA
* * *
62457460 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
62457513 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 43 0.44
64 1 0.01
65 2 0.02
66 40 0.41
67 9 0.09
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:62471234 original size:27 final size:26
Alignment explanation
Indices: 62471185--62471271 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 26
62471175 AATATTGGTA
* * ** *
62471185 AAATTACCAAAATACCCTTGTAGTGT
1 AAATGACCATAATACCCCAGTAGGGT
* *
62471211 AAAATGACCGTAATGCCCCAGTAGGGT
1 -AAATGACCATAATACCCCAGTAGGGT
* *
62471238 AAATGACCATAATACCCCTGTATGGT
1 AAATGACCATAATACCCCAGTAGGGT
62471264 AGAATGAC
1 A-AATGAC
62471272 GATTATGCCC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 23 0.48
27 25 0.52
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (26 bp):
AAATGACCATAATACCCCAGTAGGGT
Found at i:62471250 original size:26 final size:26
Alignment explanation
Indices: 62471212--62471281 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
62471202 TTGTAGTGTA
*
62471212 AAATGACCGTAATGCCCCAGTAGGGT
1 AAATGACCATAATGCCCCAGTAGGGT
* * *
62471238 AAATGACCATAATACCCCTGTATGGT
1 AAATGACCATAATGCCCCAGTAGGGT
* *
62471264 AGAATGACGATTATGCCC
1 A-AATGACCATAATGCCC
62471282 TTATGCTCCG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 23 0.64
27 13 0.36
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (26 bp):
AAATGACCATAATGCCCCAGTAGGGT
Found at i:62471751 original size:27 final size:27
Alignment explanation
Indices: 62471700--62471752 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
62471690 CAACTATTAC
*
62471700 TGATTTTGAGAATGGGCTAGGCCCAAT
1 TGATTTTGAGAATGGGCTAGACCCAAT
62471727 TGATTTTGATG-A-GGGCTGAGACCCAA
1 TGATTTTGA-GAATGGGCT-AGACCCAA
62471753 GTGAAATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 5 0.22
27 17 0.74
28 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
TGATTTTGAGAATGGGCTAGACCCAAT
Found at i:62472777 original size:30 final size:30
Alignment explanation
Indices: 62472719--62472777 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
62472709 ATTTTGTGGC
* * **
62472719 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
1 CTAGGAGCAAAATGGCCATTTTACCAAAGT
62472749 CTAGGAGCAAAATGGCCATTTTACCAAAG
1 CTAGGAGCAAAATGGCCATTTTACCAAAG
62472778 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (30 bp):
CTAGGAGCAAAATGGCCATTTTACCAAAGT
Found at i:62473235 original size:47 final size:45
Alignment explanation
Indices: 62473115--62473237 Score: 115
Period size: 47 Copynumber: 2.6 Consensus size: 45
62473105 TCACTTATAT
62473115 GAGCTAGTGTAAGACATATCTGGGACAT-GCATCGGCCACATTAGGA
1 GAGCTAGTGTAAGACATATCTGGGACATGGCATCGG-C-CATTAGGA
* ** * * *
62473161 GAGCCAGAATAAGACCATGTCTAGGACATGGCATTGG-CATTAAGACGA
1 GAGCTAGTGTAAGA-CATATCTGGGACATGGCATCGGCCATT-AG--GA
*
62473209 GTGCTAGTGTAAGACATATCTGGGACATG
1 GAGCTAGTGTAAGACATATCTGGGACATG
62473238 TTTCGGCCTC
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
45 4 0.07
46 13 0.22
47 25 0.42
48 18 0.30
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATATCTGGGACATGGCATCGGCCATTAGGA
Found at i:62473290 original size:46 final size:47
Alignment explanation
Indices: 62473170--62473386 Score: 160
Period size: 46 Copynumber: 4.6 Consensus size: 47
62473160 AGAGCCAGAA
* * ** * *
62473170 TAAGACCATGTCTAGGACATGGCATTGGCATTAAGACG-AGTGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCGACATGCAGT-C-AGTG
* * ** *
62473218 TAAGA-CATATCTGGGACAT-GTTTCGGCCTCGAGATGCCAGTCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCGACATG-CAGTCAGTG
* *
62473264 TAAGA-CATGTCTGGGACAT-GCATCGG-CTACGACATG-TGTCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCT-CGACATGCAGTCAGTG
* * * * *
62473308 TAAGACCATGTCTAGGACATGGCATCGGCATAGATATGCTAGAGCTTGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCGACATGC-AG-TC-AGTG
62473358 TAAGACCATGTCTAGGACATGGCATCGGC
1 TAAGACCATGTCTAGGACATGGCATCGGC
62473387 ACCTGCATCC
Statistics
Matches: 138, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 55 0.40
47 14 0.10
48 9 0.07
49 1 0.01
50 32 0.23
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTCTAGGACATGGCATCGGCCTCGACATGCAGTCAGTG
Found at i:62475608 original size:34 final size:34
Alignment explanation
Indices: 62475562--62475627 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
62475552 CAGTTCAGTT
62475562 TCAGTTAGGGCCTCAGCCCAA-TACAGTAATAGCA
1 TCAGTTAGGGCCTCAG-CCAATTACAGTAATAGCA
* *
62475596 TCAGTGTA-GGCCTTAGCCAATTTCAGTAATAG
1 TCAGT-TAGGGCCTCAGCCAATTACAGTAATAG
62475628 TAACAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (34 bp):
TCAGTTAGGGCCTCAGCCAATTACAGTAATAGCA
Found at i:62476538 original size:31 final size:31
Alignment explanation
Indices: 62476503--62476563 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
62476493 TATTCATGAG
* * *
62476503 ATTACCTATCACTTGCTTAGATCAATCACGC
1 ATTACCTATAACTTGCTCAAATCAATCACGC
62476534 ATTACCTATAACTTGCTCAAATCAATCACG
1 ATTACCTATAACTTGCTCAAATCAATCACG
62476564 TACTAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (31 bp):
ATTACCTATAACTTGCTCAAATCAATCACGC
Found at i:62484535 original size:13 final size:13
Alignment explanation
Indices: 62484517--62484552 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
62484507 GGCAGAGACG
62484517 TAGCCGTGTGTCT
1 TAGCCGTGTGTCT
62484530 TAGCCGTGTGTCT
1 TAGCCGTGTGTCT
*
62484543 TAGCCATGTG
1 TAGCCGTGTG
62484553 AAGGACACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.22, G:0.31, T:0.36
Consensus pattern (13 bp):
TAGCCGTGTGTCT
Found at i:62487963 original size:27 final size:27
Alignment explanation
Indices: 62487926--62488130 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
62487916 TAAATTGTAC
62487926 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62487953 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62487980 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62488006 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62488034 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62488062 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62488089 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62488116 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62488131 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62488065 original size:109 final size:108
Alignment explanation
Indices: 62487927--62488130 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
62487917 AAATTGTACA
* *
62487927 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
62487992 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
62488035 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
62488100 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
62488131 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:62492492 original size:12 final size:13
Alignment explanation
Indices: 62492475--62492509 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
62492465 GGCAGAGACG
62492475 TAGCCGTGTG-CT
1 TAGCCGTGTGTCT
62492487 TAGCCGTGTGTCT
1 TAGCCGTGTGTCT
*
62492500 TAGCCATGTG
1 TAGCCGTGTG
62492510 AAGGACACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.11, C:0.23, G:0.31, T:0.34
Consensus pattern (13 bp):
TAGCCGTGTGTCT
Found at i:62495907 original size:27 final size:27
Alignment explanation
Indices: 62495865--62496095 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
62495855 TAAATTGTAC
62495865 AGCACTAA-TGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62495891 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62495918 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62495945 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62495971 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62495999 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62496027 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62496054 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62496081 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62496096 GACTCAATAT
Statistics
Matches: 182, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.04
27 151 0.83
28 23 0.13
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62503942 original size:27 final size:27
Alignment explanation
Indices: 62503908--62504139 Score: 313
Period size: 27 Copynumber: 8.6 Consensus size: 27
62503898 TAAATTGTAC
*
62503908 AGCACTAATTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62503935 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62503962 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62503989 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62504015 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
62504043 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62504071 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62504098 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62504125 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62504140 GACTCAATAT
Statistics
Matches: 184, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
27 159 0.86
28 25 0.14
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62536749 original size:92 final size:98
Alignment explanation
Indices: 62536491--62536753 Score: 249
Period size: 92 Copynumber: 2.8 Consensus size: 98
62536481 AGATGTCGAT
* * ** *
62536491 ACCATGT-CCAGGACATGGTCTTACATTGGC-TCATTTATCAA-GTCGATGCCATGTCCCAAACA
1 ACCATGTCCCA-GACATGGTCTTACACTAGCATCACATATCAATGCCGATGCCATGTCCCAAACA
*
62536553 TGGTCTTACATTGACTATCGAAATCGAGGCTGAC
65 TGGTCTTACATTGACTATCGAAATCGAGGCCGAC
** * * * *
62536587 ACCATGTCTTAGACATGGTCTTACACTAGCTATCACATATCCATGCCGATGCTATGTCCTAGACA
1 ACCATGTCCCAGACATGGTCTTACACTAGC-ATCACATATCAATGCCGATGCCATGTCCCAAACA
**
62536652 TGGTCTTACATTGAC-A-C-ATCTCGTA-GCCGAC
65 TGGTCTTACATTGACTATCGAAATCG-AGGCCGAC
* *** * *
62536683 -GCATGTCCCAGACAT-GTCTTACACTAGC-TCTTGTCTCAATGCCGATGCCAAGTCCCAAACAT
1 ACCATGTCCCAGACATGGTCTTACACTAGCATCACATATCAATGCCGATGCCATGTCCCAAACAT
62536745 GGTCTTACA
66 GGTCTTACA
62536754 CTAGCTCTTG
Statistics
Matches: 136, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
92 34 0.25
94 13 0.10
95 12 0.09
96 33 0.24
97 3 0.02
98 9 0.07
99 32 0.24
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (98 bp):
ACCATGTCCCAGACATGGTCTTACACTAGCATCACATATCAATGCCGATGCCATGTCCCAAACAT
GGTCTTACATTGACTATCGAAATCGAGGCCGAC
Found at i:62536754 original size:48 final size:48
Alignment explanation
Indices: 62536687--62536806 Score: 206
Period size: 48 Copynumber: 2.5 Consensus size: 48
62536677 GCCGACGCAT
62536687 GTCCCAGACAT-GTCTTACACTAGCTCTTGTCTCAATGCCGATGCCAA
1 GTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCAA
* *
62536734 GTCCCAAACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCAA
*
62536782 GTCCCAGACATGGTCTTACAGTAGC
1 GTCCCAGACATGGTCTTACACTAGC
62536807 ACACAAATAA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
47 10 0.15
48 58 0.85
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
GTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCAA
Found at i:62541087 original size:28 final size:27
Alignment explanation
Indices: 62541055--62541144 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 27
62541045 CACATACCTG
62541055 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCA-TAGGCCCAATCACATT
**
62541083 TATATCACCCATTAGGCCCAAATCACATT
1 TATATGGCCCA-TAGGCCC-AATCACATT
62541112 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCAT-AGGCCCAA-TCACATT
62541141 TATA
1 TATA
62541145 GTCATACTCA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 19 0.35
29 35 0.65
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (27 bp):
TATATGGCCCATAGGCCCAATCACATT
Found at i:62552781 original size:27 final size:27
Alignment explanation
Indices: 62552749--62552901 Score: 137
Period size: 27 Copynumber: 5.7 Consensus size: 27
62552739 CTCAATTTGT
* *
62552749 AAAATTACCAAAGTACCCTCAATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ***
62552776 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
** *
62552803 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* ** *
62552830 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
62552857 AAAATTACTGAAA-TACCCTTGGTTTAC
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
62552884 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
62552902 CTGGTTTGTA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.03
27 102 0.96
28 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:62552874 original size:54 final size:53
Alignment explanation
Indices: 62552737--62552893 Score: 179
Period size: 54 Copynumber: 2.9 Consensus size: 53
62552727 TACTGAAATG
* * * *
62552737 CCCTCAATTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCAAA-TACCCTCGATTTACAGAATTACCATTTTA
* ** *
62552791 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCA-AATACCCTCGATTTACAGAATTACCATTTTA
* * * *
62552845 CCCTCGATTTATAAAATTACTGAAATACCCTTGGTTTACAAAATTACCA
1 CCCTCGATTTATAAAATTAC-CAAATACCCTCGATTTACAGAATTACCA
62552894 AAATACCCCT
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 84 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.35
Consensus pattern (53 bp):
CCCTCGATTTATAAAATTACCAAATACCCTCGATTTACAGAATTACCATTTTA
Found at i:62552906 original size:27 final size:27
Alignment explanation
Indices: 62552856--62553035 Score: 182
Period size: 27 Copynumber: 6.7 Consensus size: 27
62552846 CCTCGATTTA
** * *
62552856 TAAAATTACTGAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
*
62552883 CAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
62552910 TAAAATTACTAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * ** *
62552937 TTAAATTTCCAAAATACCTATGGCTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
62552964 TAAAATTACCAAAATACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * * * * *
62552991 TGAAATTATCGAAATACTCTTGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
62553018 TAAAA-TATCAAAATACCC
1 TAAAATTACCAAAATACCC
62553036 TTGTAGGGTA
Statistics
Matches: 126, Mismatches: 27, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
26 11 0.09
27 115 0.91
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:62553059 original size:27 final size:27
Alignment explanation
Indices: 62553028--62553214 Score: 245
Period size: 27 Copynumber: 7.0 Consensus size: 27
62553018 TAAAATATCA
*
62553028 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
62553055 AAATACCC-TGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
**
62553081 AAATA-CCTCTGTAGGGTAGAATTACTA
1 AAATACCCT-TGTAGGGTAGAATTACCG
62553108 AAATAACCC-TGTAGGGTAGAATTACCG
1 AAAT-ACCCTTGTAGGGTAGAATTACCG
* *
62553135 AAATACCCTTGTAGGGTAAAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
62553162 AAATACCCATGTATGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
62553189 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
62553215 ATTTTGCCCT
Statistics
Matches: 139, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.01
26 26 0.19
27 108 0.78
28 1 0.01
29 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:62553224 original size:27 final size:27
Alignment explanation
Indices: 62553194--62553257 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
62553184 TACCGAGATA
*
62553194 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * **
62553221 CCCTTAG-GGTGTTAAATGACTGTTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
62553248 CCCTTGTGGG
1 CCCTTGTGGG
62553258 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:62553455 original size:25 final size:25
Alignment explanation
Indices: 62553417--62553486 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
62553407 AGGAAGTGCT
* *
62553417 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
62553442 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
62553467 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62553487 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:62553511 original size:50 final size:50
Alignment explanation
Indices: 62553417--62553511 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
62553407 AGGAAGTGCT
**
62553417 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCTCAGTTTATCA
* **
62553467 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCCT-CAGTT
62553512 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 11 0.29
50 22 0.58
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCTCAGTTTATCA
Found at i:62555853 original size:27 final size:27
Alignment explanation
Indices: 62555823--62555963 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
62555813 CAATTTGTAA
**
62555823 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCAATTTACCCTCGATTTACAG
** * *
62555850 AATTACCGTTTTACCTTTGATTTACAG
1 AATTACCAATTTACCCTCGATTTACAG
*
62555877 AATTACCAATTTACCCTCGATTTATAG
1 AATTACCAATTTACCCTCGATTTACAG
* *
62555904 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAATTTACCCTCGATTTACAG
* *
62555931 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCAATTTACCCTCGATTTACAG
62555958 AATTAC
1 AATTAC
62555964 TGAAATACCC
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (27 bp):
AATTACCAATTTACCCTCGATTTACAG
Found at i:62555881 original size:54 final size:54
Alignment explanation
Indices: 62555823--62555999 Score: 201
Period size: 54 Copynumber: 3.3 Consensus size: 54
62555813 CAATTTGTAA
* *
62555823 AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCTTTGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAG
* * * * *
62555877 AATTACCAATTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAG
** * * *** * *
62555931 AATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAG
*
62555985 AATTACCAAAATACC
1 AATTACCAAATTACC
62556000 TTGGTTTGTA
Statistics
Matches: 101, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAG
Found at i:62555973 original size:81 final size:81
Alignment explanation
Indices: 62555789--62555999 Score: 244
Period size: 81 Copynumber: 2.6 Consensus size: 81
62555779 AATACGTTAG
* * *
62555789 TTTACCAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATT
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
* * *
62555854 ACCGTTTTACCTTTGA
66 ACCATTTTACCCTCGA
* * * * *** *
62555870 TTTACAGAATTAC-CAATTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
1 TTTACAAAATTACTGAA-ATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTACAGAAT
62555934 TACCATTTTACCCTCGA
65 TACCATTTTACCCTCGA
* * * *
62555951 TTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACC
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAGTACC
62556000 TTGGTTTGTA
Statistics
Matches: 104, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
80 2 0.02
81 100 0.96
82 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (81 bp):
TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
ACCATTTTACCCTCGA
Found at i:62555981 original size:27 final size:27
Alignment explanation
Indices: 62555877--62556080 Score: 158
Period size: 27 Copynumber: 7.6 Consensus size: 27
62555867 TGATTTACAG
** * * *
62555877 AATTACCAATTTACCCTCGATTTATAG
1 AATTACCAAAATACCCTTGGTTTATAA
*** * * *
62555904 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAAAATACCCTTGGTTTATAA
*** * * *
62555931 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
** *
62555958 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
62555985 AATTACCAAAATA-CCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
62556011 AATTACTAAAATACCCCTGGTCTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
62556038 AATTACCAAAATACCCCTGGCTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
62556065 AATTACCAAAATACCC
1 AATTACCAAAATACCC
62556081 CTAATTCGTA
Statistics
Matches: 154, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.15
27 131 0.85
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:62556023 original size:53 final size:54
Alignment explanation
Indices: 62555956--62556082 Score: 184
Period size: 53 Copynumber: 2.4 Consensus size: 54
62555946 CTCGATTTAC
* * * * *
62555956 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATA-CCTTGGTTTGT
1 AAAATTACTAAAATACCCCTGGTCTACAAAATTACCAAAATACCCCTGGCTTGT
*
62556009 AAAATTACTAAAATACCCCTGGTCTATAAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACTAAAATACCCCTGGTCTACAAAATTACCAAAATACCCCTGGCTTGT
*
62556063 AAAATTACCAAAATACCCCT
1 AAAATTACTAAAATACCCCT
62556083 AATTCGTAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
53 38 0.58
54 28 0.42
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACTAAAATACCCCTGGTCTACAAAATTACCAAAATACCCCTGGCTTGT
Found at i:62556081 original size:27 final size:27
Alignment explanation
Indices: 62555956--62556160 Score: 155
Period size: 27 Copynumber: 7.6 Consensus size: 27
62555946 CTCGATTTAC
** * * **
62555956 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGATTGT
* *
62555983 AAAATTACCAAAATA-CCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGGATTGT
* *
62556009 AAAATTACTAAAATACCCCTGG-TCTAT
1 AAAATTACCAAAATACCCCTGGAT-TGT
*
62556036 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGATTGT
*
62556063 AAAATTACCAAAATACCCCT-AATTCGT
1 AAAATTACCAAAATACCCCTGGATT-GT
* * * **
62556090 AAAATTATCAAAATGCCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGGATTGT
* * * **
62556117 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGGATTGT
* *
62556144 AGAATTACCGAAATACC
1 AAAATTACCAAAATACC
62556161 TCTGTAGGGT
Statistics
Matches: 153, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
26 26 0.17
27 125 0.82
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGATTGT
Found at i:62556123 original size:54 final size:55
Alignment explanation
Indices: 62556035--62556312 Score: 271
Period size: 54 Copynumber: 5.1 Consensus size: 55
62556025 CCCTGGTCTA
* **** * * * **
62556035 TAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTAAT-TCG
1 TAAAATTATCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTATAGGG
* *
62556089 TAAAATTATCAAAATGCCCCTGTAGGGTAGAATTACCGAAATACCCC-TGTAGGG
1 TAAAATTATCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTATAGGG
* * * * * *
62556143 TAGAATTACCGAAATACCTCTGTAGGGTAGAATTACTGAAATA-ACCTTATAGGG
1 TAAAATTATCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTATAGGG
* * *
62556197 TAGAATTA-CTAAAATACCCCTGTAGGGTAGAATTATCGAAATA-CCCTTGTAGGG
1 TAAAATTATC-AAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTATAGGG
* ** * *
62556251 TAAAAATATTGAAATACCCCTGTAGGGTAGAATTACCGAGATA-CCCTTGTAGGG
1 TAAAATTATCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTATAGGG
62556305 TAAAATTA
1 TAAAATTA
62556313 CCATTTTGCC
Statistics
Matches: 187, Mismatches: 33, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.02
54 183 0.98
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (55 bp):
TAAAATTATCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTTATAGGG
Found at i:62556150 original size:81 final size:81
Alignment explanation
Indices: 62556038--62556315 Score: 281
Period size: 81 Copynumber: 3.4 Consensus size: 81
62556028 TGGTCTATAA
**** * ** *
62556038 AATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCT-AATTCGTAAAATTATCAAA
1 AATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTA-GGGTAAAATTATCGAA
*
62556102 ATGCCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * *
62556119 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTA-CTGAA
1 AATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTATC-GAA
* * *
62556183 ATAACCTTATAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * * * *
62556200 AATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAAAAATATTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTATCGAAA
62556265 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
62556281 AATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 AATTACCAAAATACCCCTGTAGGGTAAAATTACCA
62556316 TTTTGCCCCT
Statistics
Matches: 159, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
80 1 0.01
81 157 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAAAATTATCGAAA
TACCCCTGTAGGGTAG
Found at i:62556165 original size:27 final size:27
Alignment explanation
Indices: 62556100--62556314 Score: 277
Period size: 27 Copynumber: 8.0 Consensus size: 27
62556090 AAAATTATCA
*
62556100 AAATGCCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
62556127 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
62556154 AAATACCTCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * **
62556181 AAATAACCTTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
62556208 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * **
62556235 AAATACCCTTGTAGGGTAAAAATATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
62556262 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
62556289 AGATACCCTTGTAGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
62556315 ATTTTGCCCC
Statistics
Matches: 162, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:62558837 original size:50 final size:49
Alignment explanation
Indices: 62558733--62558907 Score: 199
Period size: 50 Copynumber: 3.5 Consensus size: 49
62558723 CTGGTACGCA
* * * *
62558733 TAGTAGCCTACACATAGTACTACACATGAGACCAATTATCCG-TACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACATG
* *
62558781 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACATG
* * * ***
62558831 TAGTAGCCTGCACTTACTACTACACACGTGATCGAAGTTATCGGATACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGATACATG
*
62558882 TAGTAGCATGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
62558908 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
48 29 0.27
49 7 0.06
50 38 0.35
51 34 0.31
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACATG
Found at i:62564706 original size:51 final size:49
Alignment explanation
Indices: 62564589--62564721 Score: 149
Period size: 51 Copynumber: 2.7 Consensus size: 49
62564579 AGGTTATCTA
* * *
62564589 GTACGCATAGTAGCCTGCACATAGTACTACGCATGCGACCAATTATCCG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
*** * * *
62564638 GTACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCG
* *
62564689 GTACGCATAGTAACCTGCGCTTAGTACTACACA
1 GTACGCATAGTAGCCTGCACTTAGTACTACACA
62564722 TGCGGCCTCA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 31 0.46
50 3 0.04
51 34 0.50
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (49 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
Found at i:62568275 original size:28 final size:28
Alignment explanation
Indices: 62568244--62568308 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
62568234 AAAGTGATTT
*
62568244 TTGAGAAAAATGTCAATT-AGGGATTAAA
1 TTGAGAAAAATGTAAATTAAGGG-TTAAA
* *
62568272 TTGAGGAAAGTGTAAATTGAAGGGTTAAA
1 TTGAGAAAAATGTAAATT-AAGGGTTAAA
*
62568301 TTGTGAAA
1 TTGAGAAA
62568309 CAAATGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 15 0.50
29 11 0.37
30 4 0.13
ACGTcount: A:0.43, C:0.02, G:0.26, T:0.29
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAAGGGTTAAA
Found at i:62573870 original size:39 final size:39
Alignment explanation
Indices: 62573795--62573967 Score: 148
Period size: 39 Copynumber: 4.4 Consensus size: 39
62573785 GAATTCAATC
* * * * *
62573795 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATATAGT
* * *
62573835 ACCAGTACGAAGCCTGTGGACCTTAAGTCCAGATATAGT
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGT
* * * *
62573874 ACCAGCACGAAGTCTGCGGATCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGT
* * * * * *
62573913 TCCAGCACGAAGCTTGCGGGTCTTTAAGCCCGGATATAAT
1 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATATAGT
* *
62573953 TCCAGCACAAAGCCT
1 ACCAGCACGAAGCCT
62573968 CCGGGTCTTT
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
39 65 0.61
40 42 0.39
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGT
Found at i:62574029 original size:40 final size:39
Alignment explanation
Indices: 62573804--62574030 Score: 179
Period size: 40 Copynumber: 5.7 Consensus size: 39
62573794 CACCAACACA
* * * * * *
62573804 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTAC
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* * * * * * * *
62573843 GAAGCCTG-TGGACCTTAAGTCCAGATATAGTACCAGCAC
1 -AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* * *
62573882 GAAGTCTGCGGATC-TTAAGTCCGGATACAATTCCAGCAC
1 -AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* *
62573921 GAAGCTTGCGGGTCTTTAAGCCCGGATATAATTCCAGCAC
1 -AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* * * *
62573961 AAAGCCTCCGGGTCTTTAAGCCGGGATACAATTCCAACAT
1 -AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
*
62574001 ATAGCCTGTGGGTCTTTAAGCCCGGATACA
1 A-AGCCTGCGGGTCTTTAAGCCCGGATACA
62574031 CATCAAATAT
Statistics
Matches: 155, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
39 66 0.43
40 89 0.57
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
Found at i:62580555 original size:39 final size:39
Alignment explanation
Indices: 62580511--62580771 Score: 168
Period size: 40 Copynumber: 6.6 Consensus size: 39
62580501 TTTAACCCCG
** *
62580511 GATATAGTACCATTATGAAGCCTGCGGACCTTAAGTCCA
1 GATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTCCA
* *
62580550 GATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCG
1 GATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTCCA
* * * * * * *
62580589 GATACAATTCCACCACGAAGCCTGCGGGTCTTTAAGCCCA
1 GATATAGTACCAGCACGAAGCCTGC-GGACCTTAAGTCCA
** * * *
62580629 GATACTA-TTTCAGCACGAAGCCTGCGGGTCTTTAAG-CTCG
1 GATA-TAGTACCAGCACGAAGCCTGC-GGACCTTAAGTC-CA
* * * * * * *
62580669 GATATAATTCCAGCA-AATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAGTACCAGCACGA-AGCCTGC-GGACCTTAAGTCCA
* * * *
62580709 GATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCG
1 GATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTCCA
* * *
62580748 GATATAATTCCAGCACAAAGCCTG
1 GATATAGTACCAGCACGAAGCCTG
62580772 TGGGTCTTTA
Statistics
Matches: 188, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
39 92 0.49
40 93 0.49
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (39 bp):
GATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTCCA
Found at i:62580632 original size:79 final size:78
Alignment explanation
Indices: 62580528--62580802 Score: 331
Period size: 79 Copynumber: 3.5 Consensus size: 78
62580518 TACCATTATG
* * * *
62580528 AAGCCTGC-GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCGGAT
1 AAGCCTGCGGGTCTTTAAGCCCAGATATA-TTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGAT
* * *
62580592 ACAATTCCACCACG
65 ATAATTCCAGCACA
* *
62580606 AAGCCTGCGGGTCTTTAAGCCCAGATACTATTTCAGCACGAAGCCTGCGGGTCTTTAAG-CTCGG
1 AAGCCTGCGGGTCTTTAAGCCCAGATA-TATTCCAGCACGAAGCCTGCGGATC-TTAAGTC-CGG
62580670 ATATAATTCCAGCA-A
63 ATATAATTCCAGCACA
* * *
62580685 ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
1 A-AGCCTGCGGGTCTTTAAGCCCAGATA-TATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGA
62580750 TATAATTCCAGCACA
64 TATAATTCCAGCACA
* * *
62580765 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
1 AAGCCTGCGGGTCTTTAAGCCCAGATA-TATTCCAGCA
62580803 TATAGCCTGT
Statistics
Matches: 175, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
78 8 0.05
79 95 0.54
80 72 0.41
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (78 bp):
AAGCCTGCGGGTCTTTAAGCCCAGATATATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATA
TAATTCCAGCACA
Found at i:62580646 original size:40 final size:40
Alignment explanation
Indices: 62580559--62580833 Score: 351
Period size: 40 Copynumber: 6.9 Consensus size: 40
62580549 AGATATAGTA
* *
62580559 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * *
62580598 CCACCACGAAGCCTGCGGGTCTTTAAGCCCAGATACTATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * *
62580638 TCAGCACGAAGCCTGCGGGTCTTTAAGCTCGGATATAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
62580678 CCAGCA-AATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * *
62580718 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATATAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
62580757 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
62580797 CCAGCA-TATAGCCTGTGGGTCTTTAAGCCCGGATACA
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACA
62580834 CATCAAATAT
Statistics
Matches: 204, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
39 54 0.26
40 149 0.73
41 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:62580692 original size:119 final size:119
Alignment explanation
Indices: 62580568--62580833 Score: 374
Period size: 119 Copynumber: 2.2 Consensus size: 119
62580558 ACCAGCACGA
* * * *
62580568 AGCCTGCGGATC-TTAAGTCCGGATACAATTCCACCACGAAGCCTGCGGGTCTTTAAGCCCAGAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCACCACGAAGCCTGC-GGACCTTAAGCCCAGAT
* * * *
62580632 ACT-ATTTCAGCACGAAGCCTGCGGGTCTTTAAGCTCGGATATAATTCCAGCAAAT
65 A-TAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAAAT
* * *
62580687 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCACCACGAAGCCTGCGGACCTTAAGCCCAGATA
* *
62580752 TAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
66 TAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAAAT
*
62580806 AGCCTGTGGGTCTTTAAGCCCGGATACA
1 AGCCTGCGGGTCTTTAAGCCCGGATACA
62580834 CATCAAATAT
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 1 0.01
119 98 0.75
120 32 0.24
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCACCACGAAGCCTGCGGACCTTAAGCCCAGATA
TAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAAAT
Found at i:62580811 original size:79 final size:79
Alignment explanation
Indices: 62580559--62580802 Score: 357
Period size: 79 Copynumber: 3.1 Consensus size: 79
62580549 AGATATAGTA
* * * *
62580559 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCACCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAAAGCCTGCGGGTCTTTAA
* *
62580624 GCCCAGATACTATT
66 GCCCGGATACAATT
* * *
62580638 TCAGCACGAAGCCTGCGGGTCTTTAAG-CTCGGATATAATTCCAGCA-AATAGCCTGCGGGTCTT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTC-CGGATATAATTCCAGCACAA-AGCCTGCGGGTCTT
62580701 TAAGCCCGGATACAATT
63 TAAGCCCGGATACAATT
*
62580718 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAAAGCCTGTGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAAAGCCTGCGGGTCTTTAA
62580783 GCCCGGATACAATT
66 GCCCGGATACAATT
62580797 CCAGCA
1 CCAGCA
62580803 TATAGCCTGT
Statistics
Matches: 147, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
79 78 0.53
80 69 0.47
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (79 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAAAGCCTGCGGGTCTTTAA
GCCCGGATACAATT
Found at i:62596892 original size:46 final size:46
Alignment explanation
Indices: 62596842--62597017 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
62596832 TGGTTGAGCA
62596842 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
62596888 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62596933 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62596981 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62597018 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62596998 original size:93 final size:93
Alignment explanation
Indices: 62596839--62597010 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
62596829 GGATGGTTGA
*
62596839 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
62596904 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
62596932 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
62596996 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
62597011 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62599220 original size:55 final size:55
Alignment explanation
Indices: 62599143--62599269 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 55
62599133 GTTCAAGCCC
** * * * *
62599143 CACGCCCGTGTTAATTTGACAGGTTC-GCCTACAGG-TGTTAGACAGGGGCGTGTCG
1 CACGCCCGTGTTGTTTTAACAGGTTCAGCC-AC-GGTTCTTACACACGGGCGTGTCG
* * *
62599198 CACGCCCGTGCTGTTTTAACAGGTTCATCCACGGTTCTTCCACACGGGCGTGTCG
1 CACGCCCGTGTTGTTTTAACAGGTTCAGCCACGGTTCTTACACACGGGCGTGTCG
62599253 CACGCCCGTGTTGTTTT
1 CACGCCCGTGTTGTTTT
62599270 GGCAGGCTCA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 2 0.03
55 56 0.93
56 2 0.03
ACGTcount: A:0.15, C:0.28, G:0.28, T:0.28
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTAACAGGTTCAGCCACGGTTCTTACACACGGGCGTGTCG
Found at i:62599297 original size:55 final size:55
Alignment explanation
Indices: 62599188--62599304 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
62599178 TGTTAGACAG
* * * **
62599188 GGGCGTGTCGCACGCCCGTGCTGTTTTAACAGGTTCATCCACGGTTCTTCCACAC
1 GGGCGTGTCGCACGCCCGTGCTGTTTTAACAGGCTCAACCACGGTCCTGACACAC
* **
62599243 GGGCGTGTCGCACGCCCGTGTTGTTTTGGCAGGCTCAACCACGG-CCATGACACAC
1 GGGCGTGTCGCACGCCCGTGCTGTTTTAACAGGCTCAACCACGGTCC-TGACACAC
*
62599298 GGCCGTG
1 GGGCGTG
62599305 GCGTTTTATT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 1 0.02
55 51 0.98
ACGTcount: A:0.15, C:0.32, G:0.30, T:0.23
Consensus pattern (55 bp):
GGGCGTGTCGCACGCCCGTGCTGTTTTAACAGGCTCAACCACGGTCCTGACACAC
Found at i:62604012 original size:40 final size:40
Alignment explanation
Indices: 62603929--62604149 Score: 254
Period size: 40 Copynumber: 5.5 Consensus size: 40
62603919 ACCCAGGTAT
** * *
62603929 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
62603967 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
62604007 CTTCGGGACTTAGCCCGGAATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGG-ATATAGTCACTAGCACAAATGC
62604048 CTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACT-AGCACAAATGC
* * * *
62604088 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
62604128 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
62604150 CATTCGAATA
Statistics
Matches: 156, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 17 0.11
40 89 0.57
41 38 0.24
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:62612226 original size:40 final size:40
Alignment explanation
Indices: 62612136--62612355 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
62612126 ACCCAAGTAT
* ** * * *
62612136 CTTCGGGATTTAG-CCGGATATAACCACTCGTAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
62612174 CTTCGGGTCTTAGCCCTGATATGGTCACTAGCATAAATTC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
62612214 CTTTGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
62612254 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
62612294 CTTC-GGATCTTAGTCTGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
62612334 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
62612356 TATTCGAATA
Statistics
Matches: 144, Mismatches: 32, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
38 11 0.08
39 16 0.11
40 113 0.78
41 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:62614023 original size:13 final size:13
Alignment explanation
Indices: 62614005--62614044 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
62613995 GCTCGGTAGG
62614005 GACACGCCCATGT
1 GACACGCCCATGT
62614018 GACACGCCCATGT
1 GACACGCCCATGT
*
62614031 GACACGCCCCTGT
1 GACACGCCCATGT
62614044 G
1 G
62614045 CGATTACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.40, G:0.25, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:62617950 original size:19 final size:18
Alignment explanation
Indices: 62617926--62617971 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
62617916 GTTTAAAAAC
*
62617926 TTTTATTTATTATTTATTA
1 TTTTATTTATTACTT-TTA
*
62617945 TTTTATGTTTTTACTTTTA
1 TTTTAT-TTATTACTTTTA
62617964 TTTTATTT
1 TTTTATTT
62617972 TAAGACTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 15 0.62
20 7 0.29
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTATTTATTACTTTTA
Found at i:62618546 original size:17 final size:17
Alignment explanation
Indices: 62618520--62618553 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
62618510 TTTAGGATAA
* *
62618520 ATTTTGATTGATTTATG
1 ATTTTAATTGATATATG
62618537 ATTTTAATTGATATATG
1 ATTTTAATTGATATATG
62618554 TTAAATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (17 bp):
ATTTTAATTGATATATG
Found at i:62620921 original size:41 final size:41
Alignment explanation
Indices: 62620792--62621064 Score: 338
Period size: 40 Copynumber: 6.8 Consensus size: 41
62620782 ATAACCACAA
* * * * * *
62620792 GCACAATTACCTTCGGGTCTTAACCCGGGT-ATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* * *
62620832 ACACAAATGCCTTCGGGTCTTAGCCTGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
62620872 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* *
62620913 GCACAAATGCCTTCGGGTTTTAGCCCAGATAAAATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* *
62620954 GCACAAATGCCTTCGGGTCTTAGCCTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* * * *
62620994 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-TCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* * *
62621034 GAATAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
62621065 TCATTCAAAT
Statistics
Matches: 211, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 130 0.62
41 81 0.38
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (41 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
Found at i:62628321 original size:41 final size:41
Alignment explanation
Indices: 62628192--62628464 Score: 374
Period size: 40 Copynumber: 6.8 Consensus size: 41
62628182 ATAACCACAA
* * * * *
62628192 GCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* *
62628232 GCACAAATGGCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
*
62628272 ACACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
*
62628313 GCACAAATGCCTTCGGGTCCTAGCCCGGATAAAATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
*
62628354 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* * *
62628394 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
* * *
62628434 GCATAAATGCCTTCGGGACTTAGCCAGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
62628465 TCATTCAAAT
Statistics
Matches: 217, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 134 0.62
41 83 0.38
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACTC
Found at i:62635732 original size:47 final size:47
Alignment explanation
Indices: 62635678--62635871 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
62635668 TTAGGATTTT
** * *
62635678 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62635725 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
62635772 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
62635819 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62635866 ATGTGA
1 ATGTGA
62635872 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:62635778 original size:22 final size:22
Alignment explanation
Indices: 62635707--62635778 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
62635697 GTATATATGA
62635707 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
62635729 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
62635754 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
62635776 GAT
1 GAT
62635779 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:62636004 original size:98 final size:96
Alignment explanation
Indices: 62635842--62636025 Score: 273
Period size: 98 Copynumber: 1.9 Consensus size: 96
62635832 GAACATGCAT
*
62635842 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGCATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGCATATGTGGTAAAGCCGA
*
62635907 TTGGCTA-ATGTGAAATATGTATGAGATATGC
66 ATGGCTAGA-GTGAAATATGTATGAGATATGC
* * *
62635938 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGCATATGTGGTAAAGC
62636002 CGAATGGCTAGAGTGAAATATGTA
63 CGAATGGCTAGAGTGAAATATGTA
62636026 GGCGATGTGC
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.33
97 2 0.03
98 49 0.62
99 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGCATATGTGGTAAAGCCGA
ATGGCTAGAGTGAAATATGTATGAGATATGC
Found at i:62636018 original size:50 final size:48
Alignment explanation
Indices: 62635842--62636025 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
62635832 GAACATGCAT
*
62635842 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
*
62635890 ATATGTGGTAAAGCCGATTGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* * *
62635938 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
62635988 ATATGTGGTAAAGCCGAATGGCTAGA-GTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTA-ATGTGAAATATGTA
62636026 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
47 1 0.01
48 77 0.63
49 4 0.03
50 39 0.32
51 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:62636316 original size:37 final size:37
Alignment explanation
Indices: 62636175--62636315 Score: 212
Period size: 37 Copynumber: 3.8 Consensus size: 37
62636165 ATATATTCCG
*
62636175 GGTAAGACCCGATGACTACGTGTGGAGATTATGTC-C
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCTA
* *
62636211 GGTTAAGACCCGATGACTACGTGTGAAGATTATGTCCA
1 GG-TAAGACCCGATGACTACGTGTGGAGATTATGTCTA
*
62636249 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCTA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCTA
* *
62636286 GGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
62636316 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
36 2 0.02
37 92 0.96
38 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCTA
Found at i:62649813 original size:92 final size:95
Alignment explanation
Indices: 62649646--62649870 Score: 226
Period size: 92 Copynumber: 2.4 Consensus size: 95
62649636 CGAAATCGAG
* * ** ** * *
62649646 GCCGACGTCATGTCCCAGACATGGTGTTACACTAGCTCTCACATATCCGTGCTGATGCTATGTCC
1 GCCGACGTCATGTCCCAGACATGGTCTTACACTAGATCT-ACATATCAATGCCAATGCCAAGTCC
*
62649711 CAGACATGGTCATACACTGACACATCTCGTA
65 CAAACATGGTCATACACTGACACATCTCGTA
*
62649742 GCCGACGT-ATGTCCCAGACAT-GTCTTACACTAGATCT-CATCTCAATGCCAATGCCAAGTCCC
1 GCCGACGTCATGTCCCAGACATGGTCTTACACTAGATCTACATATCAATGCCAATGCCAAGTCCC
* * * *
62649804 AAACATGGTCTTACACT-AGCTCTTGTCTC-AA
66 AAACATGGTCATACACTGA-CAC--ATCTCGTA
* *
62649835 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
1 -GCCGACGTCATGTCCCAGACATGGTCTTACACTAG
62649871 CACAGAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
91 1 0.01
92 35 0.33
93 1 0.01
94 24 0.22
95 26 0.24
96 20 0.19
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (95 bp):
GCCGACGTCATGTCCCAGACATGGTCTTACACTAGATCTACATATCAATGCCAATGCCAAGTCCC
AAACATGGTCATACACTGACACATCTCGTA
Found at i:62649871 original size:48 final size:48
Alignment explanation
Indices: 62649654--62649871 Score: 194
Period size: 48 Copynumber: 4.6 Consensus size: 48
62649644 AGGCCGACGT
* * ** **
62649654 CATGTCCCAGACATGGTGTTACACTAGCTCTCACATATCCGTGCTGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCT--CATCTCAATGCCAATGC
* * * * * * *
62649704 TATGTCCCAGACATGGTCATACACT-G-ACACATCTC-GTAGCCGACG-
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT-GCCAATGC
* *
62649749 TATGTCCCAGACAT-GTCTTACACTAGATCTCATCTCAATGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCAATGC
* * ** *
62649796 CAAGTCCCAAACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCAATGC
62649844 CATGTCCCAGACATGGTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
62649872 ACAGAAATAA
Statistics
Matches: 139, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
44 9 0.06
45 17 0.12
46 22 0.16
47 12 0.09
48 56 0.40
49 1 0.01
50 22 0.16
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCAATGC
Found at i:62652100 original size:20 final size:20
Alignment explanation
Indices: 62652075--62652121 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
62652065 ATTCTGATAT
62652075 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62652095 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62652115 ACATGAT
1 ACATGAT
62652122 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:62652220 original size:25 final size:25
Alignment explanation
Indices: 62652168--62652261 Score: 120
Period size: 24 Copynumber: 3.8 Consensus size: 25
62652158 GAGGAAGTGC
* **
62652168 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTA
62652192 AAAAGGGCTTTGCCCCAGTTTACTA
1 AAAAGGGCTTTGCCCCAGTTTACTA
* *
62652217 AAAAGGGCTTTTGCCTCAGTTTA-TC
1 AAAAGGGC-TTTGCCCCAGTTTACTA
62652242 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62652262 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 28 0.45
25 21 0.34
26 13 0.21
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTA
Found at i:62652236 original size:26 final size:24
Alignment explanation
Indices: 62652168--62652274 Score: 110
Period size: 24 Copynumber: 4.4 Consensus size: 24
62652158 GAGGAAGTGC
* **
62652168 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TA
62652192 AAAAGGGCTTTGCCCCAGTTTACTA
1 AAAAGGGCTTTGCCCCAGTTTA-TA
* *
62652217 AAAAGGGCTTTTGCCTCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATA
*
62652242 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATA
62652265 AAAAGAGGCT
1 AAAAG-GGCT
62652275 AGGCCTCCAG
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 9 0.12
24 30 0.41
25 21 0.29
26 13 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATA
Found at i:62652274 original size:24 final size:23
Alignment explanation
Indices: 62652168--62652288 Score: 107
Period size: 24 Copynumber: 5.0 Consensus size: 23
62652158 GAGGAAGTGC
* **
62652168 AAAAGGGCTATGCCCCAGTTACCG
1 AAAAGGGCTTTGCCCCAGTTA-TT
*
62652192 AAAAGGGCTTTGCCCCAGTTTACTA
1 AAAAGGGCTTTGCCCCAG-TTA-TT
* *
62652217 AAAAGGGCTTTTGCCTCAGTTTATC
1 AAAAGGGC-TTTGCCCCAG-TTATT
62652242 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATT
**
62652265 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
62652289 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
23 9 0.11
24 33 0.39
25 29 0.35
26 13 0.15
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATT
Found at i:62652517 original size:31 final size:31
Alignment explanation
Indices: 62652482--62652545 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
62652472 CGTTTACAGT
62652482 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
62652513 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
62652544 AA
1 AA
62652546 TATGTAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:62660107 original size:24 final size:24
Alignment explanation
Indices: 62660080--62660125 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
62660070 TATAATAAGG
* * *
62660080 AAATGACTATTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
62660104 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
62660126 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:62660187 original size:20 final size:20
Alignment explanation
Indices: 62660162--62660208 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
62660152 ATTCTGATAT
62660162 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62660182 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62660202 ACATGAT
1 ACATGAT
62660209 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:62660307 original size:25 final size:25
Alignment explanation
Indices: 62660255--62660348 Score: 129
Period size: 24 Copynumber: 3.8 Consensus size: 25
62660245 GAGGAAGTGC
* *
62660255 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
62660279 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
62660304 AAAAGGGCTTTTGCCCCAGTTTA-TC
1 AAAAGGGC-TTTGCCCCAGTTTACTG
*
62660329 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
62660349 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
24 28 0.44
25 22 0.34
26 14 0.22
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:62660361 original size:24 final size:24
Alignment explanation
Indices: 62660254--62660361 Score: 121
Period size: 24 Copynumber: 4.4 Consensus size: 24
62660244 GGAGGAAGTG
* *
62660254 CAAAAGGGCTATGCCCCAG-TTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
62660277 CGAAAAGGGCTTTGCCCCAGTTTACT
1 C-AAAAGGGCTTTGCCCCAGTTTA-T
*
62660303 GAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGC-TTTGCCCCAGTTTAT
*
62660328 CAAAAGGGCTTTGCCCTAG-TTAT
1 CAAAAGGGCTTTGCCCCAGTTTAT
*
62660351 TAAAAGAGGCT
1 CAAAAG-GGCT
62660362 AGGACTCCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
23 10 0.14
24 30 0.41
25 20 0.27
26 14 0.19
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:62660603 original size:31 final size:31
Alignment explanation
Indices: 62660568--62660631 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
62660558 CGTTTACAGT
62660568 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
62660599 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
62660630 AA
1 AA
62660632 TATGTAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:62675711 original size:47 final size:46
Alignment explanation
Indices: 62675579--62675771 Score: 333
Period size: 47 Copynumber: 4.3 Consensus size: 46
62675569 CAGCCAAGAC
62675579 AGTGTA-ATAT-TGATAAGCCTAATGGCCGATGT-ATGAATGTGAA
1 AGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAA
62675622 AGTGTATA-ATGTGATAAGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAA
62675666 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAA
62675713 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAA
62675760 AGTGTATATATG
1 AGTGTATATATG
62675772 CCTAATGGCC
Statistics
Matches: 144, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
43 16 0.11
44 33 0.23
45 9 0.06
46 7 0.05
47 79 0.55
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (46 bp):
AGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62675836 original size:47 final size:47
Alignment explanation
Indices: 62675784--62675988 Score: 329
Period size: 47 Copynumber: 4.4 Consensus size: 47
62675774 TAATGGCCGA
*
62675784 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62675831 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62675878 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * *
62675925 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
62675972 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
62675989 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:62675837 original size:116 final size:116
Alignment explanation
Indices: 62675668--62675887 Score: 431
Period size: 116 Copynumber: 1.9 Consensus size: 116
62675658 AATGTGAAAG
*
62675668 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
62675733 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCCTAATGGCCGA
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCCTAATGGCCGA
62675784 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
62675849 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62675888 TGATAAGGCC
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 103 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (116 bp):
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCCTAATGGCCGA
Found at i:62675869 original size:163 final size:160
Alignment explanation
Indices: 62675624--62675934 Score: 595
Period size: 163 Copynumber: 1.9 Consensus size: 160
62675614 AATGTGAAAG
62675624 TGTATAATGTGATAAGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 TGTATAATGTGATAAGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
62675689 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
62675754 TGTGAAAGTGTATATATGCCTAATGGCCGA
131 TGTGAAAGTGTATATATGCCTAATGGCCGA
62675784 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATA-ATGTGATAA-GCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
62675849 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
63 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
62675914 GAATGTGAAAGTGTATATATG
128 GAATGTGAAAGTGTATATATG
62675935 TGACAGGGCC
Statistics
Matches: 148, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
160 6 0.04
161 9 0.06
162 7 0.05
163 126 0.85
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (160 bp):
TGTATAATGTGATAAGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGCCTAATGGCCGA
Found at i:62676182 original size:36 final size:36
Alignment explanation
Indices: 62676107--62676207 Score: 175
Period size: 36 Copynumber: 2.8 Consensus size: 36
62676097 CCGAGCTCTA
62676107 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATT-TGTCCGGGT
62676144 AAGACCCGATGACTACGTGTGGAGATTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTGTCCGGGT
* *
62676180 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
62676208 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 35 0.56
37 27 0.44
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (36 bp):
AAGACCCGATGACTACGTGTGGAGATTTGTCCGGGT
Found at i:62677717 original size:40 final size:40
Alignment explanation
Indices: 62677469--62677753 Score: 365
Period size: 40 Copynumber: 7.2 Consensus size: 40
62677459 GAGAATTGAG
* * *
62677469 AGTGAAATGTCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62677509 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
62677548 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
62677588 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62677628 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** *
62677668 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTATTCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
62677708 GGTGTTATATCCAGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62677748 GGTGAT
1 AGTGAT
62677754 GTGTATTCGG
Statistics
Matches: 223, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
39 39 0.17
40 184 0.83
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62681422 original size:47 final size:47
Alignment explanation
Indices: 62681368--62681592 Score: 405
Period size: 47 Copynumber: 4.7 Consensus size: 47
62681358 CAGCCAAGAC
*
62681368 AGTGTATATATGTTATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62681415 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62681462 AGTGTATATATATGTGATAAGTCCTAATGGCCAATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62681511 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62681558 AGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGT
62681593 ATATATGTGA
Statistics
Matches: 171, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 126 0.74
49 45 0.26
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62681482 original size:96 final size:94
Alignment explanation
Indices: 62681368--62681592 Score: 405
Period size: 96 Copynumber: 2.4 Consensus size: 94
62681358 CAGCCAAGAC
*
62681368 AGTGTATATATGTTATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
62681433 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* *
62681462 AGTGTATATATATGTGATAAGTCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
62681527 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
62681558 AGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGT
62681593 ATATATGTGA
Statistics
Matches: 124, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
94 33 0.27
96 91 0.73
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62681596 original size:30 final size:30
Alignment explanation
Indices: 62681560--62681622 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
62681550 AATGTGAAAG
*
62681560 TGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTATATATGTGATAAGGCCTAATAGCCGA
62681590 TGTATATATGTGATAAGGCCTAATAGCCGA
1 TGTATATATGTGATAAGGCCTAATAGCCGA
62681620 TGT
1 TGT
62681623 GATGAATGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (30 bp):
TGTATATATGTGATAAGGCCTAATAGCCGA
Found at i:62681596 original size:77 final size:77
Alignment explanation
Indices: 62681513--62681669 Score: 305
Period size: 77 Copynumber: 2.0 Consensus size: 77
62681503 AATGTGAAAG
*
62681513 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
62681578 CCTAATGGCCGA
66 CCTAATGGCCGA
62681590 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
62681655 CCTAATGGCCGA
66 CCTAATGGCCGA
62681667 TGT
1 TGT
62681670 GATGAATGTG
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (77 bp):
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGA
Found at i:62681623 original size:124 final size:124
Alignment explanation
Indices: 62681468--62681716 Score: 471
Period size: 124 Copynumber: 2.0 Consensus size: 124
62681458 TGAAAGTGTA
* *
62681468 TATATATGTGATAAGTCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
62681533 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
62681592 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
62681657 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62681716 T
1 T
62681717 GATGAATGTG
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.31
Consensus pattern (124 bp):
TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:62681643 original size:47 final size:47
Alignment explanation
Indices: 62681590--62681794 Score: 329
Period size: 47 Copynumber: 4.4 Consensus size: 47
62681580 TAATGGCCGA
*
62681590 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62681637 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62681684 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * *
62681731 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
62681778 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
62681795 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:62681704 original size:171 final size:172
Alignment explanation
Indices: 62681417--62681743 Score: 611
Period size: 171 Copynumber: 1.9 Consensus size: 172
62681407 AATGTGAAAG
*
62681417 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
62681482 GTCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
62681547 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
130 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
62681590 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAG
1 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
*
62681654 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
62681719 TGAATGTGAAAGTGTATATATGTGA
131 TGAATGTGAAAGTGTATATATGTGA
62681744 CAGGGCCGAG
Statistics
Matches: 151, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
171 103 0.68
173 48 0.32
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (172 bp):
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
Found at i:62682014 original size:37 final size:37
Alignment explanation
Indices: 62681913--62682014 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
62681903 CCGAGCTCTA
*
62681913 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
62681950 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
62681987 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
62682015 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Done.