Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 188 of 332
Found at i:62687060 original size:29 final size:29
Alignment explanation
Indices: 62686998--62687084 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 29
62686988 CATACTTATC
*
62686998 TATGGCCCACTAGGCCC-AATCACA-TTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
*
62687025 TATGGCCCATTATGCCCAAATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
* * *
62687054 TATGGCCCATCAGGCCTAATTCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
62687083 TA
1 TA
62687085 GTCATGCTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 15 0.29
28 7 0.13
29 30 0.58
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTTA
Found at i:62688075 original size:4 final size:4
Alignment explanation
Indices: 62688066--62688091 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
62688056 TTTATACTAA
62688066 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
62688092 TACATCTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:62697254 original size:46 final size:46
Alignment explanation
Indices: 62697204--62697329 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
62697194 TGGTTGAGCA
*
62697204 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
62697250 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62697296 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62697330 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62704779 original size:46 final size:46
Alignment explanation
Indices: 62704723--62704848 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
62704713 TGGTTGAGCA
62704723 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62704769 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62704815 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62704849 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62709828 original size:50 final size:49
Alignment explanation
Indices: 62709722--62709851 Score: 188
Period size: 50 Copynumber: 2.6 Consensus size: 49
62709712 CTGGTACGCA
* * * ** *
62709722 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCAACCATCTGATACACG
*
62709771 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACC-AACCATCTGATACACG
62709821 TAGTAGCCTACACTTAGTACTACACATGTGA
1 TAGTAGCCTACACTTAGTACTACACATGTGA
62709852 TCGAAGTTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 29 0.40
50 43 0.60
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACCAACCATCTGATACACG
Found at i:62709905 original size:101 final size:99
Alignment explanation
Indices: 62709722--62709905 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 99
62709712 CTGGTACGCA
* *
62709722 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTACACATAGTACTACACATGCGACCAATTATCTGGTACACATAGTAGCCTACACTTA
*
62709787 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * * *
62709821 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTAT-TGGGTGCGCATAGTAGCCTGCAC
1 TAGTAGCCTACACATAGTACTACACATGCGA-CCAA-TTATCT-GGTACACATAGTAGCCTACAC
*
62709885 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
62709906 CACAATAGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
99 28 0.39
100 4 0.06
101 40 0.56
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACATAGTACTACACATGCGACCAATTATCTGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:62712568 original size:15 final size:15
Alignment explanation
Indices: 62712512--62712576 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
62712502 TAAAGATAAC
*
62712512 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
62712526 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
62712541 GACAAACCCAGAATA
1 AAGAAATCCAGAATA
62712556 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
62712571 AAGAAA
1 AAGAAA
62712577 CCCAAGATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 9 0.22
15 31 0.76
16 1 0.02
ACGTcount: A:0.62, C:0.15, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:62712578 original size:30 final size:30
Alignment explanation
Indices: 62712512--62712580 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
62712502 TAAAGATAAC
*
62712512 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* *
62712541 GACAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
62712571 AAGAAACCCA
1 AAGAAACCCA
62712581 AGATATGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.59, C:0.19, G:0.13, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:62715631 original size:49 final size:49
Alignment explanation
Indices: 62715572--62715761 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 49
62715562 GTAGACAAGG
* * *
62715572 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCAACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCAACCAA
* * **
62715621 TTATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCAACC-AA
** * * *
62715671 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG-AGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCA-A-CCAA
* **
62715721 GTTATCAGGTACGTATAGTAGCCTGCACTTAGTACTACACA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
62715762 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 40 0.34
50 43 0.37
51 34 0.29
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCAACCAA
Found at i:62715769 original size:101 final size:99
Alignment explanation
Indices: 62715586--62715769 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 99
62715576 CTGGTACGCA
* * * *
62715586 TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCTGGTACACGTAGTAGCCTGCATTTA
1 TAGTAGCCTGCACATAGTACTACACACGCAACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
62715651 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * **
62715685 TAGTAGCCTGCACTTAGTACTACACACG-AGATCGAAGTTATCAGGTACGTATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACACGCA-A-CCAA-TTATCAGGTACACATAGTAGCCTGCAC
*
62715749 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
62715770 CACAATAGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
98 1 0.01
99 27 0.38
100 3 0.04
101 41 0.57
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCAACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:62719273 original size:28 final size:29
Alignment explanation
Indices: 62719241--62719305 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
62719231 AAAGTAATTT
*
62719241 TTGAGAAAAATGTCAATT-AGGGATTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
* *
62719269 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
*
62719298 TTGTGAAA
1 TTGAGAAA
62719306 CAAATGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.50
29 16 0.50
ACGTcount: A:0.43, C:0.02, G:0.26, T:0.29
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAGGGATTAAA
Found at i:62727821 original size:27 final size:27
Alignment explanation
Indices: 62727789--62728020 Score: 243
Period size: 27 Copynumber: 8.6 Consensus size: 27
62727779 ATATTGAGTC
* *
62727789 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62727816 CACACACTTAGTGCTACGA-AATCAAAT
1 CGCACACTTAGTGCTAC-ATAATCAACT
*
62727843 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
62727871 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
62727898 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
62727925 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62727952 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62727979 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
62728006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62728021 GTACAATTTA
Statistics
Matches: 181, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 155 0.86
28 25 0.14
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:62727949 original size:54 final size:54
Alignment explanation
Indices: 62727789--62728020 Score: 297
Period size: 54 Copynumber: 4.3 Consensus size: 54
62727779 ATATTGAGTC
* * * * * *
62727789 CGCACACTCAGTGCTATATAATCAACTCACACACTTAGTGCTACGA-AATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGCTAC-ATAGTCAAAT
** * *
62727843 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAA-TCGCACACTTAGTGCTACATAGTCAAAT
* ** *
62727898 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAATCGCACACTTAGTGCTACATAGTCAAAT
62727952 CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGCTACATAGTCAAAT
62728006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62728021 GTACAATTTA
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
54 111 0.73
55 42 0.27
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGCTACATAGTCAAAT
Found at i:62756701 original size:80 final size:76
Alignment explanation
Indices: 62756500--62756712 Score: 207
Period size: 80 Copynumber: 2.7 Consensus size: 76
62756490 GAAAAACGAA
* * ** * *
62756500 TGAAAAGCAGAAATTAAAA-AGACCTCAGCATGTGAGCCGAGACTCAACCTCACCTCTCGTAATA
1 TGAAAAACAGAAATTAAAATATACCTCAGC-TG-GTCCCGAGGCTCAA-CTCACCTCTCGAAATA
62756564 TGAGTTACATTTTT
63 TGAGTTACATTTTT
* * * *
62756578 TGACAAACAGAAATTGAAATATACCTCAGCTTGTCCCGAGGCTCAACTCACCTTTCGAAGATATG
1 TGAAAAACAGAAATTAAAATATACCTCAGCTGGTCCCGAGGCTCAACTCACCTCTCGAA-ATATG
*
62756643 AGTTATGATTTTTT
65 AGTTA-CA-TTTTT
* *
62756657 TGAAAAATAGAAATTTAAAAT-TAACCTCAGCGTGGT-CCTAGGCTCAACTCACCTCT
1 TGAAAAACAGAAA-TTAAAATAT-ACCTCAGC-TGGTCCCGAGGCTCAACTCACCTCT
62756713 AGGATATGAG
Statistics
Matches: 111, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
76 11 0.10
77 21 0.19
78 18 0.16
79 26 0.23
80 32 0.29
81 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (76 bp):
TGAAAAACAGAAATTAAAATATACCTCAGCTGGTCCCGAGGCTCAACTCACCTCTCGAAATATGA
GTTACATTTTT
Found at i:62757144 original size:287 final size:281
Alignment explanation
Indices: 62756502--62757281 Score: 797
Period size: 287 Copynumber: 2.7 Consensus size: 281
62756492 AAAACGAATG
* * * *
62756502 AAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACCTCACCTCTCGTAATATGA
1 AAAAACAGAAATTGAAAA-ACCTCAGCATGTGAGCCG-GACTCAA-CTCACCTCTCGCAATATAA
** * * ** *
62756567 GTT-A-CATTTTTTGACAAACAGAAATTGAAATATACCTCAGCTTGTCCCGAGGCTCAACTCACC
63 GTTGATTTTTTTTTGA-AAACAGAAATTGAAATATACCTCAACGTGTCTTGAGGCTCAACTCA-T
* * * *
62756630 TT-TCGAAGATATGAGTTATGATTTTTTTGAAAAATAGAAATTTAAAATTAACCTCAGCGTGGTC
126 TTCTCGCA-ATAAGAG-T-TGATTTTTTT--AAAACAGAAA-TTGAAATT-ACCTCAGC--GGTC
*
62756694 CT-AGGCTCAACTCACCTCTAGGATATGAGTTGAACAAAAAATACCACATTGTGTTAATCTGAAG
182 CTGAGGCTCAACTCACCTCTAGAATATGAGTTG-A-AAAAAATACCACATTGTGTTAATCTGAAG
*
62756758 CCTCAAACCCACTCTCGCAATATGGTGATTTTTTTAAAA
245 CCTCAAACACACTCTCGCAATATGGTGATTTTTTT--AA
* *
62756797 AAAAACAGAAATTGAAAAACCTCAGCATGTGGAGGCGAACTCAAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAAACCTCAGCATGT-GAGCCGGACTC-AACTCACCTCTCGCAATATAAG
*
62756862 TTGATTTTTTTTTTGGAAAACAGAAATTTGAAATA-ACTTCAACGTGTCTTGAGGCTCAACTCAT
64 TTGA-TTTTTTTTT-GAAAACAGAAA-TTGAAATATACCTCAACGTGTCTTGAGGCTCAACTCAT
*
62756926 TTCTCGCAATAAGAGTTGATTTTTTTAACACCAGAAATTGGAAATTACCTCAGCGGTCCTGAGGC
126 TTCTCGCAATAAGAGTTGATTTTTTTAA-AACAGAAATT-GAAATTACCTCAGCGGTCCTGAGGC
*
62756991 TCAACT-ACCTCTAGCAATATG-GTTG-AAAAAATACCACATTGTGTGTAATCTGGAG-CTCAAT
189 TCAACTCACCTCTAG-AATATGAGTTGAAAAAAATACCACATTGTGT-TAATCTGAAGCCTCAA-
*
62757052 TCAC-CTC-CGCAATATGAGTTGATTTTTTT-A
251 ACACACTCTCGCAATATG-G-TGATTTTTTTAA
* * *
62757082 AAAAACAGAAAATTGAAATTAACCTCAGCATGTGAACCAGGCCTCAACTCACCTCTCGCAATACA
1 AAAAACAG-AAATTGAAA--AACCTCAGCATGTGAGCC-GGACTCAACTCACCTCTCGCAATATA
62757147 AGTTGATTTTTTTTTGAACAACAGAAATTGAAA-ATACCTCAACGTCGT-TTGA-GCTCAACTCA
62 AGTTGATTTTTTTTTGAA-AACAGAAATTGAAATATACCTCAACGT-GTCTTGAGGCTCAACTCA
* * *
62757209 TTTCTCGGCAATATTA-AGTT-A-ATTTTGAAAACAAAAGATTGAAATTA-CTCAGCGTGTCCTG
125 TTTCTC-GCAATA--AGAGTTGATTTTTTTAAAACAGAA-ATTGAAATTACCTCAGCG-GTCCTG
62757270 AGGCTCAACTCA
185 AGGCTCAACTCA
62757282 TTTTCTCGCA
Statistics
Matches: 423, Mismatches: 33, Indels: 69
0.81 0.06 0.13
Matches are distributed among these distances:
282 7 0.02
283 28 0.07
284 27 0.06
285 38 0.09
286 41 0.10
287 57 0.13
288 38 0.09
290 18 0.04
291 15 0.04
292 12 0.03
293 11 0.03
294 46 0.11
295 25 0.06
296 8 0.02
297 42 0.10
298 10 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (281 bp):
AAAAACAGAAATTGAAAAACCTCAGCATGTGAGCCGGACTCAACTCACCTCTCGCAATATAAGTT
GATTTTTTTTTGAAAACAGAAATTGAAATATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
GCAATAAGAGTTGATTTTTTTAAAACAGAAATTGAAATTACCTCAGCGGTCCTGAGGCTCAACTC
ACCTCTAGAATATGAGTTGAAAAAAATACCACATTGTGTTAATCTGAAGCCTCAAACACACTCTC
GCAATATGGTGATTTTTTTAA
Found at i:62757392 original size:76 final size:77
Alignment explanation
Indices: 62757044--62757392 Score: 249
Period size: 76 Copynumber: 4.6 Consensus size: 77
62757034 TGTAATCTGG
*
62757044 AGCTCAATTCA-CCTCCGCAATATGAGTTGATTTTTTTAAAA-AACAGAAAATTGAAATTAACCT
1 AGCTCAACTCATCCTCCGCAATATGAGTTGATTTTTTTAAAACAACAG-AAATTGAAATT-ACCT
* *****
62757107 CAGCATGTGAACCA
64 CAGCGTGTCCTTGA
* ** ** *
62757121 GGCCTCAACTCA-CCTCTCGCAATACAAGTTGATTTTTTTTTGAACAACAGAAATTGAAAATACC
1 AG-CTCAACTCATCCTC-CGCAATATGAGTTGA-TTTTTTTAAAACAACAGAAATTGAAATTACC
*
62757185 TCAACGTCGT--TTG-
63 TCAGCGT-GTCCTTGA
* * * * * *
62757198 AGCTCAACTCATTTCTCGGCAATATTAAGTT-A-ATTTTGAAAACAA-A-AGATTGAAATTA-CT
1 AGCTCAACTCA-TCCTCCGCAATA-TGAGTTGATTTTTTTAAAACAACAGAAATTGAAATTACCT
62757258 CAGCGTGTCC-TGA
64 CAGCGTGTCCTTGA
* ** * **
62757271 GGCTCAACTCATTTTCTCGCAGTATGAGTT-ATTTTTTTTTTAACAACAG-AATTGAAATTACCT
1 AGCTCAACTCATCCTC-CGCAATATGAGTTGA-TTTTTTTAAAACAACAGAAATTGAAATTACCT
62757334 CAGCGTGTCCTTGA
64 CAGCGTGTCCTTGA
* **
62757348 AGCTCAACTCATCCTCAGCAATATGAGTTGATTTTTGAAAAACAA
1 AGCTCAACTCATCCTCCGCAATATGAGTTGATTTTTTTAAAACAA
62757393 AAATTAAAAG
Statistics
Matches: 211, Mismatches: 42, Indels: 39
0.72 0.14 0.13
Matches are distributed among these distances:
71 2 0.01
72 19 0.09
73 25 0.12
74 10 0.05
75 20 0.09
76 42 0.20
77 26 0.12
78 20 0.09
79 21 0.10
80 21 0.10
81 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (77 bp):
AGCTCAACTCATCCTCCGCAATATGAGTTGATTTTTTTAAAACAACAGAAATTGAAATTACCTCA
GCGTGTCCTTGA
Found at i:62765711 original size:20 final size:20
Alignment explanation
Indices: 62765686--62765732 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
62765676 ATTTTGATAT
*
62765686 ACATGAT-TGATATGATATGC
1 ACATGATATG-TAGGATATGC
62765706 ACATGATATGTAGGATATGC
1 ACATGATATGTAGGATATGC
62765726 ACATGAT
1 ACATGAT
62765733 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTAGGATATGC
Found at i:62765882 original size:25 final size:26
Alignment explanation
Indices: 62765782--62765930 Score: 223
Period size: 25 Copynumber: 5.8 Consensus size: 26
62765772 GAGGAAGTGC
62765782 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62765808 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
62765835 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
62765861 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
62765886 AAAAGGGATT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
62765911 AAAAGGCCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62765931 ATTAAATAGG
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 53 0.46
26 35 0.31
27 26 0.23
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62771466 original size:20 final size:20
Alignment explanation
Indices: 62771441--62771487 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
62771431 ATTTTGATAT
*
62771441 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGACATGC
62771461 ACATGATATGTATGACATGC
1 ACATGATATGTATGACATGC
62771481 ACATGAT
1 ACATGAT
62771488 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGACATGC
Found at i:62771605 original size:25 final size:26
Alignment explanation
Indices: 62771534--62771630 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
62771524 GAGGATGTGC
62771534 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62771560 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
62771586 AAAAGGGCTT-TGCCCCAGTTTAGCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62771611 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62771631 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 33 0.48
26 36 0.52
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62771605 original size:51 final size:51
Alignment explanation
Indices: 62771534--62771630 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
62771524 GAGGATGTGC
**
62771534 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTAGCGAAAAGGGCTT-TGCCCCAGTTTATTG
62771586 AAAAGGGCTT-TGCCCCAGTTTAGCGAAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTAGCGAAAAGGGCTTTGCCCCAGTT
62771631 ATTAAAGAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 10 0.23
51 23 0.53
52 10 0.23
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTAGCGAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:62794550 original size:33 final size:32
Alignment explanation
Indices: 62794492--62794554 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
62794482 CAAAGTGGCT
* *
62794492 AGATATAGATATTGTGGCTAGGCCACCAGAAC
1 AGATATAGATATTGTGGCGAAGCCACCAGAAC
*
62794524 AGATATATATATATGTGGCGAAGCCACCAGA
1 AGATATAGATAT-TGTGGCGAAGCCACCAGA
62794555 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (32 bp):
AGATATAGATATTGTGGCGAAGCCACCAGAAC
Found at i:62801861 original size:16 final size:16
Alignment explanation
Indices: 62801840--62801874 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
62801830 GATGTCGGCA
62801840 AGTGTACCTATCGAAC
1 AGTGTACCTATCGAAC
62801856 AGTGTACCTATCGAAC
1 AGTGTACCTATCGAAC
62801872 AGT
1 AGT
62801875 CTAGAATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (16 bp):
AGTGTACCTATCGAAC
Found at i:62825065 original size:32 final size:33
Alignment explanation
Indices: 62825019--62825082 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
62825009 AACAGCGGGT
62825019 ACTGGGCCAAAG-CCCTTTTCAGA-ATACAGTAA
1 ACTGGGCCAAAGCCCCTTTTCAGATA-ACAGTAA
**
62825051 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCAAAGCCCCTTTTCAGATAACAGTA
62825083 TGGCCGATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (33 bp):
ACTGGGCCAAAGCCCCTTTTCAGATAACAGTAA
Found at i:62829800 original size:28 final size:28
Alignment explanation
Indices: 62829732--62829829 Score: 117
Period size: 27 Copynumber: 3.5 Consensus size: 28
62829722 CATGAGATTG
* * * *
62829732 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
62829761 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
**
62829789 GCACTAAGTGTGTAAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62829816 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62829830 GACTTAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 22 0.37
28 20 0.33
29 18 0.30
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62834068 original size:40 final size:40
Alignment explanation
Indices: 62834013--62834231 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
62834003 GATTATATCT
62834013 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
* *
62834053 GGGTTAAGTCCCGAAGGCATTCATGCTGGTTGCTATTTAC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
* * * *
62834093 GGGTTAAGTCCCAAAGGCATTCATGCTGGTTGTTATTTCT
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
*
62834133 GGGTTAAG-CCCTGAAGGCATTCGTGCTGGTCGCTATTTCC
1 GGGTTAAGTCCC-GAAGGCATTCGTGCTGGTTGCTATTTCC
* * **
62834173 GGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
* *
62834213 GGGCTAAATCCCGAAGGCA
1 GGGTTAAGTCCCGAAGGCA
62834232 ATTGGGTTGG
Statistics
Matches: 159, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.02
40 153 0.96
41 3 0.02
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
Found at i:62834230 original size:120 final size:120
Alignment explanation
Indices: 62834005--62834231 Score: 339
Period size: 120 Copynumber: 1.9 Consensus size: 120
62833995 CAATTGAGGA
*
62834005 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGG
1 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAGG
** * *
62834070 CATTCATGCTGGTTGCTATTTACGGGTTAAGTCCCAAAGGCATTCATGCTGGTTG
66 CATTCATGCTGGTTGCTACATACGGGCTAAATCCCAAAGGCATTCATGCTGGTTG
*
62834125 TTATTTCTGGGTTAAG-CCCTGAAGGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAG
1 TTATATCTGGGTTAAGTCCC-GAAGGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAG
** * * *
62834189 GCATTTGTGCTGGTTGTTACATCCGGGCTAAATCCCGAAGGCA
65 GCATTCATGCTGGTTGCTACATACGGGCTAAATCCCAAAGGCA
62834232 ATTGGGTTGG
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 3 0.03
120 92 0.97
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (120 bp):
TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAGG
CATTCATGCTGGTTGCTACATACGGGCTAAATCCCAAAGGCATTCATGCTGGTTG
Found at i:62834845 original size:36 final size:36
Alignment explanation
Indices: 62834798--62834870 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
62834788 AGGATTGACT
62834798 TTTGATGTTAATTACGTATCTTTTTGGTGATGTATA
1 TTTGATGTTAATTACGTATCTTTTTGGTGATGTATA
62834834 TTTGATGTTAATTACGTATCTTTTTGGTGATGTATA
1 TTTGATGTTAATTACGTATCTTTTTGGTGATGTATA
62834870 T
1 T
62834871 ATGTATAGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.22, C:0.05, G:0.19, T:0.53
Consensus pattern (36 bp):
TTTGATGTTAATTACGTATCTTTTTGGTGATGTATA
Found at i:62837693 original size:49 final size:49
Alignment explanation
Indices: 62837626--62837819 Score: 214
Period size: 49 Copynumber: 4.0 Consensus size: 49
62837616 GTAGACAAGG
* * * *
62837626 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
62837675 TTATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
** * *
62837725 CCATCTGATACAC---GTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* * *
62837772 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
62837820 TCACAATAAA
Statistics
Matches: 119, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
47 30 0.25
48 9 0.08
49 40 0.34
50 12 0.10
51 28 0.24
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:62837753 original size:47 final size:47
Alignment explanation
Indices: 62837642--62837820 Score: 171
Period size: 47 Copynumber: 3.7 Consensus size: 47
62837632 GGTACGCATA
* * *
62837642 GTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACAC
1 GTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACAC
* ** * *
62837688 GTAGTAGCCTGCATTTAGTACTACACACGTGACCTAACCATCTGATACAC
1 ---GTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACAC
* * * *
62837738 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATA
1 GTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCCGGTA--CA-C
*
62837789 GTAGCCTGCACTTAGTACTACACATGTGACCT
1 GTAGCCTGCACTTAGTACTACACACGTGACCT
62837821 CACAATAAAT
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
47 31 0.29
48 6 0.06
49 27 0.25
50 13 0.12
51 29 0.27
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (47 bp):
GTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACAC
Found at i:62837809 original size:98 final size:96
Alignment explanation
Indices: 62837642--62837820 Score: 259
Period size: 98 Copynumber: 1.8 Consensus size: 96
62837632 GGTACGCATA
* * *
62837642 GTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCATTTAGT
1 GTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTAGT
62837707 ACTACACACGTGACCTAACCATCTGATACAC
66 ACTACACACGTGACCTAACCATCTGATACAC
* * * * *
62837738 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACTTA
1 GTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACTTA
*
62837803 GTACTACACATGTGACCT
64 GTACTACACACGTGACCT
62837821 CACAATAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 26 0.36
97 3 0.04
98 43 0.60
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (96 bp):
GTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTAGT
ACTACACACGTGACCTAACCATCTGATACAC
Found at i:62841371 original size:28 final size:29
Alignment explanation
Indices: 62841340--62841395 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
62841330 AAGTGATTTT
*
62841340 TGAGAAAAATGTCAATT-AGGGATTAAAA
1 TGAGAAAAATGTAAATTGAGGGATTAAAA
* *
62841368 TGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TGAGAAAAATGTAAATTGAGGGATTAAA
62841396 TTGTGAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.46, C:0.02, G:0.27, T:0.25
Consensus pattern (29 bp):
TGAGAAAAATGTAAATTGAGGGATTAAAA
Found at i:62841803 original size:23 final size:24
Alignment explanation
Indices: 62841762--62841808 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
62841752 TAAGTAGATT
62841762 AGAAAATAAAAGAAGTGAATTAAAA
1 AGAAAATAAAAGAAGTGAA-TAAAA
*
62841787 AGAAAA-AAAAGGA-TGAATAAAA
1 AGAAAATAAAAGAAGTGAATAAAA
62841809 TAAGGGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 6 0.29
25 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (24 bp):
AGAAAATAAAAGAAGTGAATAAAA
Found at i:62842537 original size:2 final size:2
Alignment explanation
Indices: 62842530--62842564 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
62842520 CATATTCGGC
* *
62842530 TA TA TA TA TA TA TA TA TA TA TA TA CA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62842565 GTAAGCCCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:62843378 original size:27 final size:27
Alignment explanation
Indices: 62843319--62843523 Score: 243
Period size: 27 Copynumber: 7.6 Consensus size: 27
62843309 TAAATTGTAC
62843319 AGCACTAAGTGTGCGAGATTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
*
62843347 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * **
62843374 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
62843400 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
62843428 GGCACTAAGTGTGCGAGATTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
62843456 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
62843482 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
62843509 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62843524 GACTCAATAT
Statistics
Matches: 154, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
26 25 0.16
27 90 0.58
28 39 0.25
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:62873243 original size:59 final size:59
Alignment explanation
Indices: 62873151--62873269 Score: 222
Period size: 59 Copynumber: 2.0 Consensus size: 59
62873141 GCAAGCTACC
62873151 TTGTGGTCGTTCAGAGATTAGTTTGGAAAGCTGGCCTATCTTGAGTTTTGAG-CCTTGGA
1 TTGTGGTCGTTCAGAGATTAGTTTGGAAAGCTGGCCTATC-TGAGTTTTGAGCCCTTGGA
62873210 TTGTGGTCGTTCAGAGATTAGTTTGGAAAGCTGGCCTATCTGAGTTTTGAGCCCTTGGA
1 TTGTGGTCGTTCAGAGATTAGTTTGGAAAGCTGGCCTATCTGAGTTTTGAGCCCTTGGA
62873269 T
1 T
62873270 CGACGTTTGT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 11 0.19
59 48 0.81
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.37
Consensus pattern (59 bp):
TTGTGGTCGTTCAGAGATTAGTTTGGAAAGCTGGCCTATCTGAGTTTTGAGCCCTTGGA
Found at i:62882873 original size:43 final size:43
Alignment explanation
Indices: 62882825--62882971 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
62882815 ATTAAGATGA
* *
62882825 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTAT
* * *
62882868 GATTACGTGTAAAACCATGTCTGGGACATTGACATCGT-TATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TAT
* * * * *
62882911 GATTTCATGTAAGACCACGTATGGGACGTTGGCAATGGTA-TAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGC-ATCGTATTAT
**
62882954 GAAAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
62882972 ATTTTAACAT
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 79 0.94
44 4 0.05
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTAT
Found at i:62883708 original size:171 final size:179
Alignment explanation
Indices: 62883398--62883744 Score: 629
Period size: 171 Copynumber: 2.0 Consensus size: 179
62883388 TGGATTAAGG
62883398 GGTGATAAGGGGAGAAATTTTAGGGATGATGGAGACATAAGGGGGAGCATATCTAGGAGATATTT
1 GGTGATAAGGGGAGAAATTTTAGGGATGATGGAGACATAAGGGGGAG-ATATCTAGGAGATATTT
62883463 TAGGAGATTTGAAATGGGAGAAATGGTGGCCGGTCAAGAGGAAGGTTCAGAGCAAATTTGGCTAT
65 TAGGAGATTTGAAATGGGAGAAATGGTGGCCGGTCAAGAGGAAGGTTCAGAGCAAATTTGGCTAT
62883528 TGGGGTTTTAGGGTGGC-TTTTTCTCTTTTTTTTTT-TTT-TTTTCTTTC
130 TGGGGTTTTAGGGTGGCATTTTTCTCTTTTTTTTTTCTTTCTTTTCTTTC
62883575 GGTGATAAGGGGAGAAATTTTAGGGATGATGGAGACATAA-GGGG-G-TATCTAGGAGATATTTT
1 GGTGATAAGGGGAGAAATTTTAGGGATGATGGAGACATAAGGGGGAGATATCTAGGAGATATTTT
62883637 AGGAGATTTGAAAT-GGAGAAATGGTGG-CGGTCAAGAGGAAGGTTCAGAGCAAATTTGGCTATT
66 AGGAGATTTGAAATGGGAGAAATGGTGGCCGGTCAAGAGGAAGGTTCAGAGCAAATTTGGCTATT
62883700 GGGGTTTTAGGGTGGCATTTTTCTCTTTTTTTTTTCTTTCTTTTC
131 GGGGTTTTAGGGTGGCATTTTTCTCTTTTTTTTTTCTTTCTTTTC
62883745 ACTTGTGCCG
Statistics
Matches: 167, Mismatches: 0, Indels: 9
0.95 0.00 0.05
Matches are distributed among these distances:
171 52 0.31
172 31 0.19
173 34 0.20
174 5 0.03
175 1 0.01
176 4 0.02
177 40 0.24
ACGTcount: A:0.25, C:0.08, G:0.32, T:0.35
Consensus pattern (179 bp):
GGTGATAAGGGGAGAAATTTTAGGGATGATGGAGACATAAGGGGGAGATATCTAGGAGATATTTT
AGGAGATTTGAAATGGGAGAAATGGTGGCCGGTCAAGAGGAAGGTTCAGAGCAAATTTGGCTATT
GGGGTTTTAGGGTGGCATTTTTCTCTTTTTTTTTTCTTTCTTTTCTTTC
Found at i:62884613 original size:21 final size:20
Alignment explanation
Indices: 62884587--62884626 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
62884577 GCATTACGGT
62884587 AAGTTGGGCCTCAAGGGGCTG
1 AAGTTGGGCC-CAAGGGGCTG
*
62884608 AAGTTGGGCCCAATGGGCT
1 AAGTTGGGCCCAAGGGGCT
62884627 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (20 bp):
AAGTTGGGCCCAAGGGGCTG
Found at i:62885004 original size:20 final size:20
Alignment explanation
Indices: 62884979--62885025 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
62884969 ATTTTGATAT
*
62884979 ACATGAT-TGATATGATATGC
1 ACATGATATG-TAGGATATGC
62884999 ACATGATATGTAGGATATGC
1 ACATGATATGTAGGATATGC
62885019 ACATGAT
1 ACATGAT
62885026 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTAGGATATGC
Found at i:62885175 original size:25 final size:26
Alignment explanation
Indices: 62885075--62885198 Score: 162
Period size: 26 Copynumber: 4.8 Consensus size: 26
62885065 GAGGAAGTGC
*
62885075 AAAAGGCCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
62885101 AAAAAGGGCTTATGCCCCTGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* *
62885128 AAAAGGGCTTATGCCTCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
62885154 AAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62885179 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62885199 ATTAAAGAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
25 30 0.35
26 32 0.37
27 24 0.28
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62890654 original size:25 final size:25
Alignment explanation
Indices: 62890626--62890675 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
62890616 CCTTATATTA
* * *
62890626 TGAAAATGACTGTTTTGCCCCTAGG
1 TGAAAATGACCGTTATACCCCTAGG
62890651 TGAAAATGACCGTTATACCCCTAGG
1 TGAAAATGACCGTTATACCCCTAGG
62890676 AATTACTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
TGAAAATGACCGTTATACCCCTAGG
Found at i:62890736 original size:20 final size:20
Alignment explanation
Indices: 62890711--62890757 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
62890701 ATTTTGATAT
*
62890711 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGACATGC
62890731 ACATGATATGTATGACATGC
1 ACATGATATGTATGACATGC
62890751 ACATGAT
1 ACATGAT
62890758 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGACATGC
Found at i:62890878 original size:25 final size:26
Alignment explanation
Indices: 62890807--62890903 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
62890797 GAGGATGTGC
62890807 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62890833 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
62890859 AAAAGGGCTT-TGCCCCAGTTTAGCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62890884 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62890904 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 33 0.48
26 36 0.52
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62890887 original size:51 final size:51
Alignment explanation
Indices: 62890807--62890903 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
62890797 GAGGATGTGC
**
62890807 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTAGCGAAAAGGGCTT-TGCCCCAGTTTATTG
62890859 AAAAGGGCTT-TGCCCCAGTTTAGCGAAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTAGCGAAAAGGGCTTTGCCCCAGTT
62890904 ATTAAAGAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 10 0.23
51 23 0.53
52 10 0.23
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTAGCGAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:62905053 original size:39 final size:39
Alignment explanation
Indices: 62904995--62905076 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
62904985 ATTACCAGCA
62904995 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
*
62905034 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
62905073 CCAG
1 CCAG
62905077 TGTCTTCCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
Found at i:62910672 original size:39 final size:39
Alignment explanation
Indices: 62910612--62910771 Score: 293
Period size: 39 Copynumber: 4.1 Consensus size: 39
62910602 ATTACCAGCA
62910612 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
***
62910651 CCAGCACGAAGCCTATAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
62910690 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
62910729 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
62910768 CCAG
1 CCAG
62910772 TGTCTTCCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:62916897 original size:79 final size:81
Alignment explanation
Indices: 62916795--62916979 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
62916785 GCTCCTCGTT
* *
62916795 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
62916858 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
62916875 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
62916939 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62916955 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62916980 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:62916979 original size:40 final size:40
Alignment explanation
Indices: 62916795--62916979 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
62916785 GCTCCTCGTT
* *
62916795 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62916835 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62916875 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62916914 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62916955 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62916980 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62918901 original size:27 final size:26
Alignment explanation
Indices: 62918854--62918904 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
62918844 CGAGGCTACC
*
62918854 AGATATTGTGACGAAGTCACCAGAAA
1 AGATATTGTGACGAAGCCACCAGAAA
* *
62918880 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
62918905 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAA
Found at i:62926244 original size:31 final size:32
Alignment explanation
Indices: 62926188--62926248 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
62926178 CGAAGTCACT
* *
62926188 AGATATAGATATTGTGGCTAGGCCACCAGAAC
1 AGATATAGATATTGTGGCGAAGCCACCAGAAC
*
62926220 AGATATATATA-TGTGGCGAAGCCACCAGA
1 AGATATAGATATTGTGGCGAAGCCACCAGA
62926249 TTGCAACGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (32 bp):
AGATATAGATATTGTGGCGAAGCCACCAGAAC
Found at i:62926274 original size:71 final size:67
Alignment explanation
Indices: 62926193--62926330 Score: 177
Period size: 67 Copynumber: 2.0 Consensus size: 67
62926183 TCACTAGATA
* * * *
62926193 TAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAACGA
1 TAGATATTGTGACAAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTACAACGA
62926258 GGCTGC
62 GGCTGC
* * *
62926264 TAGATGTTGTGACAAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTACAACGAGGCT
1 TAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAACGAGGCT
62926329 GC
66 GC
62926331 CAGAACGCTT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
67 36 0.60
71 24 0.40
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (67 bp):
TAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAACGAGGCT
GC
Found at i:62939397 original size:40 final size:39
Alignment explanation
Indices: 62939342--62939564 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 39
62939332 CGGATGATAA
* * *
62939342 CCGGGCTAAGTCCCGAAGGTATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TT
* *
62939382 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTA-TT
* *
62939422 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TT
*
62939462 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAT-T
* * *
62939502 CCGGGCTAAGTCCCGAAGGAATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAT-T
*
62939542 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
62939565 GAGCGAGTAG
Statistics
Matches: 161, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 160 0.99
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATT
Found at i:62939475 original size:80 final size:80
Alignment explanation
Indices: 62939342--62939564 Score: 329
Period size: 80 Copynumber: 2.8 Consensus size: 80
62939332 CGGATGATAA
* * * * **
62939342 CCGGGCTAAGTCCCGAAGGTATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
62939407 TGTGAGTTATTACAT
66 TGTGAGCTACTACAT
*
62939422 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
62939487 TGTGAGCTACTATAT
66 TGTGAGCTACTACAT
* * *
62939502 CCGGGCTAAGTCCCGAAGGAATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATT
62939565 GAGCGAGTAG
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 130 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGTGAGCTACTACAT
Found at i:62939555 original size:120 final size:119
Alignment explanation
Indices: 62939342--62939598 Score: 326
Period size: 120 Copynumber: 2.2 Consensus size: 119
62939332 CGGATGATAA
* * *
62939342 CCGGGCTAAGTCCCGAAGGTATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGAATTGG
* * *
62939407 TGTGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCA-TTGAGCGAG-TAGCTACAT
*
62939462 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCT-AG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGAAT
* * *
62939524 TGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAGTAGCTATAT
63 TGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGTAGCTACAT
* *
62939581 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
62939599 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
118 16 0.13
119 17 0.14
120 87 0.72
121 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGAATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGTAGCTACAT
Found at i:62947652 original size:46 final size:45
Alignment explanation
Indices: 62947602--62947777 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
62947592 TGGTTGAGCA
62947602 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
62947648 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
62947695 TCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
62947741 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62947778 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62947758 original size:93 final size:93
Alignment explanation
Indices: 62947599--62947769 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
62947589 GGATGGTTGA
* * * *
62947599 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
62947664 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
62947692 GCATCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
62947757 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62947770 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62950725 original size:15 final size:15
Alignment explanation
Indices: 62950688--62950763 Score: 79
Period size: 15 Copynumber: 5.3 Consensus size: 15
62950678 GTATCTTGGG
* *
62950688 TCTTTATCCTGGATC
1 TCTTTATTCTGGATT
62950703 TCTTTATTCTGGATT
1 TCTTTATTCTGGATT
*
62950718 TCTTTATTC-GGGTT
1 TCTTTATTCTGGATT
*
62950732 TCTCTA-TCTTGGATT
1 TCTTTATTC-TGGATT
62950747 TCTTTATTC-GG-TT
1 TCTTTATTCTGGATT
62950760 TCTT
1 TCTT
62950764 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
13 8 0.15
14 11 0.21
15 31 0.60
16 2 0.04
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (15 bp):
TCTTTATTCTGGATT
Found at i:62952716 original size:46 final size:45
Alignment explanation
Indices: 62952666--62952841 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
62952656 TGGTTGAGCA
62952666 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
62952712 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62952759 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
62952805 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62952842 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62952822 original size:93 final size:93
Alignment explanation
Indices: 62952663--62952833 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
62952653 GGATGGTTGA
* *
62952663 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62952728 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
62952756 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62952821 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62952834 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62955791 original size:15 final size:15
Alignment explanation
Indices: 62955752--62955830 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
62955742 GTATCTTGGG
*
62955752 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
62955767 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
62955782 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
62955796 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
62955811 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
62955825 TTTCTT
1 TTTCTT
62955831 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:62955815 original size:29 final size:29
Alignment explanation
Indices: 62955743--62955829 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
62955733 CATAGTATCG
* * * *
62955743 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
62955773 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
62955802 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
62955830 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:62957783 original size:46 final size:45
Alignment explanation
Indices: 62957733--62957908 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
62957723 TGGTTGAGCA
62957733 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
62957779 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
62957826 TCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
62957872 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62957909 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62957889 original size:93 final size:93
Alignment explanation
Indices: 62957730--62957900 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
62957720 GGATGGTTGA
* * * *
62957730 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
62957795 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
62957823 GCATCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
62957888 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62957901 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62959627 original size:46 final size:46
Alignment explanation
Indices: 62959577--62959752 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
62959567 TGGTTGAGCA
*
62959577 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
62959623 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
62959670 TCTGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
62959716 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62959753 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.67
47 32 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:62959733 original size:93 final size:93
Alignment explanation
Indices: 62959574--62959744 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
62959564 GGATGGTTGA
* *
62959574 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
*
62959639 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
62959667 GCATCTGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
62959731 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
62959745 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62967760 original size:79 final size:82
Alignment explanation
Indices: 62967642--62967826 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
62967632 GCTACTCGTT
* * * *
62967642 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGTCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
62967705 GGATTTAGTAAC-TCGCG
65 GGATATAGTAACTTAGCA
* **
62967722 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
62967785 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
62967802 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62967827 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:62967826 original size:40 final size:40
Alignment explanation
Indices: 62967623--62967826 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
62967613 TGGAATTTAA
** *
62967623 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
62967663 CCGGTTATAGTAACTCGCACAATTGTCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62967703 CCGGATTTAGTAACTCGCGCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62967742 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
62967782 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
62967822 CCGGA
1 CCGGA
62967827 CATCATTCAA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 89 0.66
41 12 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62984530 original size:64 final size:65
Alignment explanation
Indices: 62984449--62984600 Score: 166
Period size: 67 Copynumber: 2.3 Consensus size: 65
62984439 AGAAATTATG
* * * *
62984449 ATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGCAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGAT-CCAGTGAAGGACACCATGCAGACAAGAGAGCTACGAGATA
*
62984512 T
65 A
* * *
62984513 ATGTAGCTAGGTCGCATGCGTGGCTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATCCA-GTGAAGGACACCATGCAGACAAGAGAGCTACGAGAT
62984578 AA
64 AA
* *
62984580 AT-TGGCTAGGTCACATGGGTG
1 ATGTAGCTAGGTCGCATGGGTG
62984601 GTATTGAGAG
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
64 22 0.30
65 3 0.04
66 17 0.23
67 31 0.42
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.22
Consensus pattern (65 bp):
ATGTAGCTAGGTCGCATGGGTGATCCAGTGAAGGACACCATGCAGACAAGAGAGCTACGAGATAA
Found at i:62991239 original size:37 final size:37
Alignment explanation
Indices: 62991189--62991296 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
62991179 ACCTTTAGCT
* * *
62991189 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
62991226 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
62991263 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
62991297 TAGAGCCCGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:62991486 original size:47 final size:47
Alignment explanation
Indices: 62991415--62992535 Score: 1819
Period size: 47 Copynumber: 23.6 Consensus size: 47
62991405 CCCTTCGGGA
* * * * * *
62991415 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991462 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991509 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62991556 CTTATCACATATATACACTTTAACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991603 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62991650 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991697 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62991744 CTTATCACATGTATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62991791 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991838 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991885 CTTATGACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62991932 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62991979 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62992026 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62992073 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62992122 CTTATCACATGTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62992169 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62992216 CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62992265 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62992312 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62992361 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62992408 CTTATCACATATATATACGCTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62992457 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62992504 CTTATCACATATATATACGCTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
62992536 TTAAATATAC
Statistics
Matches: 1013, Mismatches: 51, Indels: 18
0.94 0.05 0.02
Matches are distributed among these distances:
47 818 0.81
49 195 0.19
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63001451 original size:43 final size:43
Alignment explanation
Indices: 63001399--63001484 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
63001389 ATTCTTCGGA
63001399 AGTGGGGGTTGTGGAGCAGCCGTATTAGTTCGAATGTATTGGT
1 AGTGGGGGTTGTGGAGCAGCCGTATTAGTTCGAATGTATTGGT
63001442 AGTGGGGGTTGTGGAGCAGCCGTATTAGTTCGAATGTATTGGT
1 AGTGGGGGTTGTGGAGCAGCCGTATTAGTTCGAATGTATTGGT
63001485 TGAGCCAATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.19, C:0.09, G:0.40, T:0.33
Consensus pattern (43 bp):
AGTGGGGGTTGTGGAGCAGCCGTATTAGTTCGAATGTATTGGT
Found at i:63002723 original size:38 final size:38
Alignment explanation
Indices: 63002644--63002716 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
63002634 TAAGCTCAGC
* *
63002644 TATAATACTAGCACTAAGCCTGCGAGATTTAACCCAGA
1 TATAATACCAGCACGAAGCCTGCGAGATTTAACCCAGA
* *
63002682 TATAATACCAGCACGAAGTCTGCGGGATTTAACCC
1 TATAATACCAGCACGAAGCCTGCGAGATTTAACCC
63002717 GAATATATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (38 bp):
TATAATACCAGCACGAAGCCTGCGAGATTTAACCCAGA
Found at i:63008711 original size:43 final size:41
Alignment explanation
Indices: 63008662--63008783 Score: 120
Period size: 42 Copynumber: 2.8 Consensus size: 41
63008652 CCAGATATGT
63008662 TCTTACATGTAATCAAACATCGATGCCACTGTCCCAGACAGGG
1 TCTTACATGTAATCAAA-ATCGATGCCA-TGTCCCAGACAGGG
* * * *
63008705 TCTTACATGAAATC-AGATACAATGCCGATGTCCCAGACATGG
1 TCTTACATGTAATCAAAAT-CGATGCC-ATGTCCCAGACAGGG
* *
63008747 TCTTACACGTAAAACAAAAGTCGATGCCAATGTCCCA
1 TCTTACATGT-AATCAAAA-TCGATGCC-ATGTCCCA
63008784 AATATGGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
41 2 0.03
42 28 0.44
43 17 0.27
44 16 0.25
45 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
TCTTACATGTAATCAAAATCGATGCCATGTCCCAGACAGGG
Found at i:63008794 original size:86 final size:85
Alignment explanation
Indices: 63008636--63008805 Score: 207
Period size: 86 Copynumber: 2.0 Consensus size: 85
63008626 CAGAAAGTAT
* * * * * * *
63008636 ATACAATGTCGACATCCCAGATATGTTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCGACATCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAAAC
63008701 AGGGTCTTACATGAAATCAG
66 AGGGTCTTACATGAAATCAG
**
63008721 ATACAATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAAA-AGTCGATGCCAATGTCCCAA
1 ATACAATGCCGACATCCCAGACATGGTCTTACACGT-AAACAAACA-TCGATGCCAATGTCCCAA
* * *
63008785 ATATGGTCTTACGTGAAATCA
64 ACAGGGTCTTACATGAAATCA
63008806 CATAACAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
85 31 0.44
86 40 0.56
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (85 bp):
ATACAATGCCGACATCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAAAC
AGGGTCTTACATGAAATCAG
Found at i:63008865 original size:66 final size:66
Alignment explanation
Indices: 63008759--63008886 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 66
63008749 TTACACGTAA
* *
63008759 AACAAAAGTCGATGCCAATGTCCCAAATATGGTCTTACGTGAAATCACATAACAAAATCCTAGTA
1 AACAAAAGTCGATGCCAACGTCCCAAACATGGTCTTACGTGAAATCACATAACAAAATCCTAGTA
63008824 G
66 G
* * * *
63008825 AACAAAATTCGATGCCAACGTCCCAGACGTGGTCTTACGTGAAATCACATAACGAAATCCTA
1 AACAAAAGTCGATGCCAACGTCCCAAACATGGTCTTACGTGAAATCACATAACAAAATCCTA
63008887 TGTCATGACA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (66 bp):
AACAAAAGTCGATGCCAACGTCCCAAACATGGTCTTACGTGAAATCACATAACAAAATCCTAGTA
G
Found at i:63010411 original size:44 final size:44
Alignment explanation
Indices: 63010362--63010489 Score: 151
Period size: 39 Copynumber: 3.0 Consensus size: 44
63010352 AACTCATATA
* * * *
63010362 CGATGCTAATGTCCCAAACATGGTCTTACACGTAAATCACAAAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCACAAAT
63010406 CGATGCCAACGTCCCAGACGTGG---TACA--TAAATCACAAAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCACAAAT
* * *
63010445 TGATGCCAACGTCCCAGGCGTGGTCTTACACG-AAATCACATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCACAAAT
63010488 CG
1 CG
63010490 GAATCCTATG
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
39 33 0.46
41 4 0.06
42 4 0.06
43 11 0.15
44 19 0.27
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (44 bp):
CGATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCACAAAT
Found at i:63014150 original size:25 final size:25
Alignment explanation
Indices: 63014122--63014229 Score: 119
Period size: 25 Copynumber: 4.3 Consensus size: 25
63014112 TTGGAGGCCT
*
63014122 ACCCTCTTTTAAT-AACTGGGGCAAA
1 ACCCT-TTTTGATAAACTGGGGCAAA
*
63014147 ACCCTTTCTGATAAACTGGGGCAAA
1 ACCCTTTTTGATAAACTGGGGCAAA
* *
63014172 GCCCTTTTCGATAAACTGGGGCAAA
1 ACCCTTTTTGATAAACTGGGGCAAA
* ** * *
63014197 TCCCTTTACGGTAAACTGGGGCATA
1 ACCCTTTTTGATAAACTGGGGCAAA
63014222 ACCCTTTT
1 ACCCTTTT
63014230 AGCACTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
24 5 0.07
25 66 0.93
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (25 bp):
ACCCTTTTTGATAAACTGGGGCAAA
Found at i:63014189 original size:50 final size:50
Alignment explanation
Indices: 63014135--63014229 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 50
63014125 CTCTTTTAAT
63014135 AACTGGGGCAAAACCCTTT-CTGATAAACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCAAAACCCTTTAC-GATAAACTGGGGCATAA-CCCTTTTCGATA
* *
63014185 AACTGGGGCAAATCCCTTTACGGTAAACTGGGGCATAACCCTTTT
1 AACTGGGGCAAAACCCTTTACGATAAACTGGGGCATAACCCTTTT
63014230 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
50 38 0.93
51 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (50 bp):
AACTGGGGCAAAACCCTTTACGATAAACTGGGGCATAACCCTTTTCGATA
Found at i:63015759 original size:87 final size:87
Alignment explanation
Indices: 63015660--63015822 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 87
63015650 GCCCCTAAGT
* *
63015660 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63015725 CGAGTTCGGATTGCATCATAAC
66 CGAGTTCGGATTGCATCATAAC
*
63015747 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63015812 CGAGTTCGGAT
66 CGAGTTCGGAT
63015823 GCTCAACCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (87 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATTGCATCATAAC
Found at i:63015774 original size:20 final size:20
Alignment explanation
Indices: 63015710--63015776 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 20
63015700 ATAAGTGAAC
63015710 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
* * **
63015730 TCGGATTGCATCAT-AACGAAC
1 TCGGACT-CAAC-TCAACGAGT
63015751 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
63015771 TCGGAC
1 TCGGAC
63015777 ATTCGCATCC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 1 0.03
20 20 0.56
21 14 0.39
22 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:63015821 original size:46 final size:46
Alignment explanation
Indices: 63015655--63015821 Score: 263
Period size: 46 Copynumber: 3.7 Consensus size: 46
63015645 AACCCGCCCC
* * *
63015655 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
63015701 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATT-GCAT-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
63015743 TAA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
63015788 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63015822 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
41 28 0.25
42 5 0.04
43 7 0.06
44 6 0.05
45 5 0.04
46 61 0.54
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:63015840 original size:46 final size:44
Alignment explanation
Indices: 63015657--63015840 Score: 176
Period size: 46 Copynumber: 4.1 Consensus size: 44
63015647 CCCGCCCCTA
* ** * *
63015657 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCCCATCC-T
* *
63015702 AAGTGAACTCGGACTCAACTCAACGAGTTCGGAT--T-GCATCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCCCATCCT
** *** *
63015744 AACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCCCATCC-T
63015789 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC--CCATCCT
63015836 AGTGA
1 AGTGA
63015841 TTTGTCACTT
Statistics
Matches: 117, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
41 30 0.26
42 1 0.01
43 6 0.05
44 6 0.05
45 1 0.01
46 67 0.57
47 1 0.01
48 5 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCCCATCCT
Found at i:63016276 original size:30 final size:30
Alignment explanation
Indices: 63016242--63016301 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
63016232 ATTTAATACG
63016242 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
63016272 AACTTTTGCATAATTGCACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
63016302 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:63021280 original size:30 final size:30
Alignment explanation
Indices: 63021244--63021447 Score: 329
Period size: 30 Copynumber: 6.8 Consensus size: 30
63021234 AATTTTCTCA
63021244 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63021274 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63021304 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63021334 ACTAG-CACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
63021363 ACTAGCCACACCTTTTCCACCACCAACTGC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63021393 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
63021423 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
63021448 CTTGTACCTA
Statistics
Matches: 161, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
29 29 0.18
30 132 0.82
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:63021335 original size:23 final size:24
Alignment explanation
Indices: 63021309--63021362 Score: 63
Period size: 29 Copynumber: 2.0 Consensus size: 24
63021299 ACTCCACTAG
63021309 CCACTCTTTTTCCACCACCAACTCC
1 CCACTCTTTTTCCACCACCAACT-C
63021334 ACTAGCACTCTTTTTCCACCACCAACTC
1 -C---CACTCTTTTTCCACCACCAACTC
63021362 C
1 C
63021363 ACTAGCCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 1 0.04
27 1 0.04
28 1 0.04
29 22 0.88
ACGTcount: A:0.22, C:0.48, G:0.02, T:0.28
Consensus pattern (24 bp):
CCACTCTTTTTCCACCACCAACTC
Found at i:63021401 original size:89 final size:90
Alignment explanation
Indices: 63021244--63021447 Score: 365
Period size: 89 Copynumber: 2.3 Consensus size: 90
63021234 AATTTTCTCA
63021244 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
63021309 CCACTCTTTTTCCACCACCAACTCC
66 CCACTCTTTTTCCACCACCAACTCC
* *
63021334 ACTAG-CACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTGCACTAG
1 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
63021398 CCACTCTTTTTCCACCACCAACTCC
66 CCACTCTTTTTCCACCACCAACTCC
* *
63021423 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
63021448 CTTGTACCTA
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
89 87 0.81
90 21 0.19
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (90 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
CCACTCTTTTTCCACCACCAACTCC
Found at i:63022030 original size:27 final size:25
Alignment explanation
Indices: 63021952--63022147 Score: 82
Period size: 25 Copynumber: 7.8 Consensus size: 25
63021942 ATATTTCTTA
* *
63021952 ATATTATATTATATATATTCTTTTAAT
1 ATATTATA-TATATATATT-TTATACT
** ** *
63021979 ATATTAGGTATAT-T-TTAAATTCT
1 ATATTATATATATATATTTTATACT
63022002 ATATTACGTATATATATATTTTATACT
1 ATATTA--TATATATATATTTTATACT
* * * * *
63022029 ATTTTATTTATATATCTTTAATATT
1 ATATTATATATATATATTTTATACT
* *
63022054 ATATTATTTATATATATTTTCTAC-
1 ATATTATATATATATATTTTATACT
* * *
63022078 ATGTTATCTTATGTATATATCTTA-ACT
1 ATATTA---TATATATATATTTTATACT
* * *
63022105 ATATTATGTATAT-T-TTTAACACT
1 ATATTATATATATATATTTTATACT
* *
63022128 ATATTATGTACATAT-TTTTA
1 ATATTATATATATATATTTTA
63022148 ATATTATCAC
Statistics
Matches: 125, Mismatches: 34, Indels: 23
0.69 0.19 0.13
Matches are distributed among these distances:
22 3 0.02
23 24 0.19
24 17 0.14
25 40 0.32
26 8 0.06
27 33 0.26
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
ATATTATATATATATATTTTATACT
Found at i:63022040 original size:25 final size:25
Alignment explanation
Indices: 63022012--63022147 Score: 102
Period size: 25 Copynumber: 5.5 Consensus size: 25
63022002 ATATTACGTA
*
63022012 TATATATATTTTATACTATTTTATT
1 TATATATATTTTATACTATATTATT
* * *
63022037 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATT
* *
63022062 TATATATATTTTCTAC-ATGTTATCT
1 TATATATATTTTATACTATATTAT-T
* *
63022087 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATT
* * *
63022113 TATAT-T-TTTAACACTATATTATG
1 TATATATATTTTATACTATATTATT
*
63022136 TACATAT-TTTTA
1 TATATATATTTTA
63022148 ATATTATCAC
Statistics
Matches: 88, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
22 3 0.03
23 16 0.18
24 14 0.16
25 36 0.41
26 4 0.05
27 15 0.17
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATT
Found at i:63022148 original size:25 final size:23
Alignment explanation
Indices: 63022086--63022148 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
63022076 ACATGTTATC
*
63022086 TTATGTATATATCTT-A-ACTATA
1 TTATGTATAT-TTTTAACACTATA
63022108 TTATGTATATTTTTAACACTATA
1 TTATGTATATTTTTAACACTATA
63022131 TTATGTACATATTTTTAA
1 TTATGT--ATATTTTTAA
63022149 TATTATCACG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 3 0.08
22 11 0.31
23 12 0.33
25 10 0.28
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (23 bp):
TTATGTATATTTTTAACACTATA
Found at i:63022288 original size:16 final size:16
Alignment explanation
Indices: 63022269--63022349 Score: 69
Period size: 16 Copynumber: 4.8 Consensus size: 16
63022259 ATTTCTATTT
63022269 TATTTT-TTATTTTCAA
1 TATTTTATTATTTT-AA
63022285 TATTAATTATTATTATTCTAA
1 TATT--TTATTA-T-TT-TAA
63022306 TATTTTGA-TATTTTAA
1 TATTTT-ATTATTTTAA
63022322 TATTTTA-TATTTTATA
1 TATTTTATTATTTTA-A
63022338 TATTTTATTATT
1 TATTTTATTATT
63022350 CACATCATTG
Statistics
Matches: 56, Mismatches: 0, Indels: 17
0.77 0.00 0.23
Matches are distributed among these distances:
15 8 0.14
16 21 0.38
17 6 0.11
18 3 0.05
19 7 0.12
20 2 0.04
21 8 0.14
22 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (16 bp):
TATTTTATTATTTTAA
Found at i:63022333 original size:7 final size:8
Alignment explanation
Indices: 63022298--63022349 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
63022288 TAATTATTAT
*
63022298 TATTCTAA
1 TATTTTAA
*
63022306 TATTTTGA
1 TATTTTAA
63022314 TATTTTAA
1 TATTTTAA
63022322 TATTTT-A
1 TATTTTAA
63022329 TATTTTATA
1 TATTTTA-A
*
63022338 TATTTTAT
1 TATTTTAA
63022346 TATT
1 TATT
63022350 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:63023115 original size:15 final size:15
Alignment explanation
Indices: 63023095--63023128 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63023085 TATTTGGTTG
*
63023095 TTTTTAAGTTTTTAA
1 TTTTTAAGGTTTTAA
*
63023110 TTTTTATGGTTTTAA
1 TTTTTAAGGTTTTAA
63023125 TTTT
1 TTTT
63023129 GGTTTAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.71
Consensus pattern (15 bp):
TTTTTAAGGTTTTAA
Found at i:63030771 original size:71 final size:70
Alignment explanation
Indices: 63030649--63030818 Score: 200
Period size: 71 Copynumber: 2.4 Consensus size: 70
63030639 CTTTCCAAGG
** *
63030649 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTT
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
*
63030713 TTTTTT
65 TGTTTT
* ** * *
63030719 CAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
63030784 TGTTTT
65 TGTTTT
** *
63030790 -AAATTGACTCATATTGCGAGAGGTGAGTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTT
63030819 AAGCTTTTTA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 25 0.29
71 58 0.68
72 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:63031096 original size:148 final size:147
Alignment explanation
Indices: 63030828--63031177 Score: 425
Period size: 148 Copynumber: 2.3 Consensus size: 147
63030818 TAAGCTTTTT
* ** *
63030828 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
63030893 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT-AGG
63030958 -ACACGCTGAGGTAATTTC
129 TACACGCTGAGGTAATTTC
* *
63030976 AATTTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTTTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* ** ** *
63031041 TATTTTCAATTTCTGTT-TTCAAAAAAAAATCAACTTGTATTGCGAGAGGTGAGTTGAGCCTTGG
65 TAATTTCAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTAGG
* *
63031105 TTCACATGCTGAGGTATTTTC
129 -T-ACACGCTGAGGTAATTTC
* * **
63031126 AATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTTTG-TTTT----CAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
63031178 TTCAGATTAC
Statistics
Matches: 173, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
147 13 0.08
148 102 0.59
150 23 0.13
151 4 0.02
154 27 0.16
155 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (147 bp):
AATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTAGGTA
CACGCTGAGGTAATTTC
Found at i:63031124 original size:78 final size:76
Alignment explanation
Indices: 63030842--63031182 Score: 442
Period size: 76 Copynumber: 4.5 Consensus size: 76
63030832 TTTGTTTTTC
*
63030842 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
63030907 GTTGTT-AAAAA
66 GTT-TTCAAAAA
** *
63030918 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
63030983 GTTTTC----A
66 GTTTTCAAAAA
* * ** * * *
63030990 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
63031055 GTTTTCAAAAA
66 GTTTTCAAAAA
** * * *
63031066 AAAATCAACTTGTATTGCGAGAGGTGAGTTGAGCCT-TGGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
*
63031130 TCTGTTTTTAAAAA
63 TCTGTTTTCAAAAA
*
63031144 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
63031183 ATTACACAAT
Statistics
Matches: 233, Mismatches: 23, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
72 66 0.28
75 3 0.01
76 97 0.42
78 66 0.28
79 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAAA
Found at i:63031412 original size:210 final size:208
Alignment explanation
Indices: 63030842--63031390 Score: 568
Period size: 210 Copynumber: 2.5 Consensus size: 208
63030832 TTTGTTTTTC
* ** * * *
63030842 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTAAGTACACGCTGAGGTATTTTCAATTTCT
** *
63030907 GTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTA
66 GTT-TTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-G--A---T----TA
* * ** *
63030971 -ATTTCAATTTTTGT-TTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
120 CA---CAA-TGTGGTATTT---TTTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
63031034 GTTGAGGTATTTTCAATTTCTGTTTTCAAAAA
178 GCTGAGGTAATTTCAATTTCTGTTTT-AAAAA
** ** ** *
63031066 AAAATCAACTTGTATTGCGAGAGGTGAGTTGAGCCTTGGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTAAG-T-ACACGCTGAGGTATTTTCAATTT
*
63031131 CTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACAATGTG
64 CTGTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACAATGTG
* ** *
63031196 GTATTTTTTTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
129 GTATTTTTTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
63031261 TTTCTGTTGTT-AAAA
194 TTTCTGTT-TTAAAAA
*
63031276 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT-AAGTACACGCTGAGGTATTTTCAATTTC
*
63031340 TGTTTTCAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCTTC
65 TGTTTT--AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC
63031391 GGTTCACATG
Statistics
Matches: 284, Mismatches: 32, Indels: 32
0.82 0.09 0.09
Matches are distributed among these distances:
208 28 0.10
210 77 0.27
211 59 0.21
212 2 0.01
213 4 0.01
214 6 0.02
216 2 0.01
217 1 0.00
220 1 0.00
223 1 0.00
224 34 0.12
225 3 0.01
226 66 0.23
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (208 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTAAGTACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACAATGTGGT
ATTTTTTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TCTGTTTTAAAAA
Found at i:63031461 original size:79 final size:77
Alignment explanation
Indices: 63031205--63031471 Score: 351
Period size: 75 Copynumber: 3.5 Consensus size: 77
63031195 GGTATTTTTT
* *
63031205 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG--T
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTT
*
63031268 TGTTAAAAAAAA
66 TATTAAAAAAAA
** * *
63031280 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTT
**
63031345 TCAAAAAAAAAAA
66 T-ATTAAAAAAAA
* * *
63031358 TCAACTTATATTGCGAGAGGTGAGTTGAGCTTC-GGTTCACATGCTGAGGTATTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTG
*
63031422 TTTTTTTAAAAAAAA
63 TTTTATTAAAAAAAA
*
63031437 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
63031472 ATTACACAAT
Statistics
Matches: 165, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
75 56 0.34
77 3 0.02
78 37 0.22
79 40 0.24
80 29 0.18
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (77 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTT
TATTAAAAAAAA
Found at i:63031501 original size:289 final size:284
Alignment explanation
Indices: 63030922--63031711 Score: 1182
Period size: 289 Copynumber: 2.8 Consensus size: 284
63030912 TAAAAAAAAA
* ** *
63030922 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
* * *
63030987 T-CAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
66 TAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
*
63031051 TTCTGTTTTCAAAAAAAAATCAACTTGTATTGCGAGAGGTGAGTTGAGCCTT-GGTTCACATGCT
131 TTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAG-CTTCGGTTCACATGCT
63031115 GAGGTATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT
195 GAGGTATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT
63031180 CAGATTACACAATGTGGTATTTTTT
260 CAGATTACACAATGTGGTATTTTTT
63031205 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-
63031270 TTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
65 TT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
63031335 ATTTCTGTTTTCAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCTTCGGTTCACAT
129 ATTTCTGTTTTC--AAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCTTCGGTTCACAT
*
63031400 GCTGAGGTATTTTCAATTTCTGTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
192 GCTGAGGTATTTTCAATTTCTG-TTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
63031465 GCTTCAGATTACACAATGTGGTATTTTTT
256 GCTTCAGATTACACAATGTGGTATTTTTT
* * *
63031494 TCAACTCATATTCCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTATTT
1 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC--TGT
* * ** * * *
63031559 TTTCAAAAAAATCAACTCATATTTCGA-AAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTAATTT
64 TTT-AAAAAAATCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
* * * *
63031623 CAATTTCTGTTTGTC----AAAAATTAACTCATATTACGAGAGGTGAGTTGAG-TCTCGGCTCAC
127 CAATTTCTGTTT-TCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCT-TCGGTTCAC
* * *
63031683 ATGCTGAGGTCTTTTTAATTTCTGCTTTT
190 ATGCTGAGGTATTTTCAATTTCTGTTTTT
63031712 CAATTTCTGT
Statistics
Matches: 468, Mismatches: 27, Indels: 23
0.90 0.05 0.04
Matches are distributed among these distances:
283 60 0.13
284 7 0.01
285 61 0.13
286 70 0.15
287 3 0.01
288 68 0.15
289 130 0.28
290 64 0.14
291 5 0.01
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (284 bp):
TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
TAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
TTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCTTCGGTTCACATGCTG
AGGTATTTTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC
AGATTACACAATGTGGTATTTTTT
Found at i:63031620 original size:76 final size:73
Alignment explanation
Indices: 63031494--63031677 Score: 242
Period size: 76 Copynumber: 2.5 Consensus size: 73
63031484 GGTATTTTTT
* * * * *
63031494 TCAACTCATATTCCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTATTT
1 TCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTAAATTTCT-GTT
*
63031559 TTTCAAAAAAA
65 TGTC--AAAAA
* * *
63031570 TCAACTCATATTTCGAAAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTAAATTTCTGTTT
63031635 GTCAAAAA
66 GTCAAAAA
* *
63031643 TTAACTCATATTACGAGAGGTGAGTTGAGTCTCGG
1 TCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
63031678 CTCACATGCT
Statistics
Matches: 96, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
73 36 0.38
75 5 0.05
76 55 0.57
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (73 bp):
TCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTAAATTTCTGTTT
GTCAAAAA
Found at i:63031728 original size:15 final size:14
Alignment explanation
Indices: 63031694--63031744 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
63031684 TGCTGAGGTC
63031694 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
63031707 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
63031721 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
63031736 TTTTTCAAT
1 TTTTTCAAT
63031745 AATCAGCTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 4 0.12
14 17 0.53
15 11 0.34
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.65
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:63032526 original size:30 final size:30
Alignment explanation
Indices: 63032490--63032693 Score: 338
Period size: 30 Copynumber: 6.8 Consensus size: 30
63032480 ACTTTTCTCA
63032490 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63032520 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63032550 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63032580 ACTAG-CACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63032609 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
63032639 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
63032669 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
63032694 CTTGTACCTA
Statistics
Matches: 163, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
29 29 0.18
30 134 0.82
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:63032581 original size:23 final size:24
Alignment explanation
Indices: 63032555--63032608 Score: 63
Period size: 29 Copynumber: 2.0 Consensus size: 24
63032545 ACTCCACTAG
63032555 CCACTCTTTTTCCACCACCAACTCC
1 CCACTCTTTTTCCACCACCAACT-C
63032580 ACTAGCACTCTTTTTCCACCACCAACTC
1 -C---CACTCTTTTTCCACCACCAACTC
63032608 C
1 C
63032609 ACTAGCCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 1 0.04
27 1 0.04
28 1 0.04
29 22 0.88
ACGTcount: A:0.22, C:0.48, G:0.02, T:0.28
Consensus pattern (24 bp):
CCACTCTTTTTCCACCACCAACTC
Found at i:63032595 original size:89 final size:90
Alignment explanation
Indices: 63032490--63032693 Score: 374
Period size: 89 Copynumber: 2.3 Consensus size: 90
63032480 ACTTTTCTCA
63032490 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
63032555 CCACTCTTTTTCCACCACCAACTCC
66 CCACTCTTTTTCCACCACCAACTCC
*
63032580 ACTAG-CACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
63032644 CCACTCTTTTTCCACCACCAACTCC
66 CCACTCTTTTTCCACCACCAACTCC
* *
63032669 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
63032694 CTTGTACCTA
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
89 88 0.81
90 21 0.19
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (90 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
CCACTCTTTTTCCACCACCAACTCC
Found at i:63033219 original size:23 final size:23
Alignment explanation
Indices: 63033182--63033311 Score: 65
Period size: 23 Copynumber: 5.5 Consensus size: 23
63033172 CCTTTTTTGT
63033182 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
63033205 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
***
63033227 TATTGGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
63033250 TATTACGTATATATATTTTATACTATTT
1 TATTA--TATATAT-TCTTA-A-TATTA
63033278 TATT-TATATA-TCTTTAATATTA
1 TATTATATATATTC-TTAATATTA
*
63033300 TATTATTTATAT
1 TATTATATATAT
63033312 ATATATTTTC
Statistics
Matches: 79, Mismatches: 14, Indels: 27
0.66 0.12 0.22
Matches are distributed among these distances:
21 3 0.04
22 22 0.28
23 24 0.30
24 7 0.09
25 11 0.14
26 1 0.01
27 3 0.04
28 6 0.08
29 1 0.01
30 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:63033275 original size:25 final size:25
Alignment explanation
Indices: 63033247--63033395 Score: 99
Period size: 25 Copynumber: 5.9 Consensus size: 25
63033237 ATTTTAAATT
*
63033247 CTATATTACGTATATATATTTTATA
1 CTATATTATGTATATATATTTTATA
* * * *
63033272 CTATTTTATTTATATATCTTTAATA
1 CTATATTATGTATATATATTTTATA
* * *
63033297 TTATATTATTTATATATATATTTTCTA
1 CTATATTA--TGTATATATATTTTATA
* * *
63033324 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTAT-GTA--TATATATTTTATA
* *
63033350 CTATATTATGTATATAT-TTTAACA
1 CTATATTATGTATATATATTTTATA
*
63033374 CTATATTATGTACATAT-TTTTA
1 CTATATTATGTATATATATTTTA
63033396 ATATTATCAC
Statistics
Matches: 95, Mismatches: 22, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
23 3 0.03
24 27 0.28
25 28 0.29
26 9 0.09
27 28 0.29
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATATTTTATA
Found at i:63033287 original size:27 final size:27
Alignment explanation
Indices: 63033257--63033366 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 27
63033247 CTATATTACG
*
63033257 TATATATATTTTATACTATTTTA-TT-
1 TATATATATTTTATACTATATTATTTA
* * *
63033282 TATATATCTTTAATATTATATTATTTA
1 TATATATATTTTATACTATATTATTTA
* *
63033309 TATATATATTTTCTAC-ATGTTATCTTA
1 TATATATATTTTATACTATATTAT-TTA
* * *
63033336 TGTATATATCTTA-ACTATATTATGTA
1 TATATATATTTTATACTATATTATTTA
63033362 TATAT
1 TATAT
63033367 TTTAACACTA
Statistics
Matches: 66, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
25 19 0.29
26 16 0.24
27 31 0.47
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (27 bp):
TATATATATTTTATACTATATTATTTA
Found at i:63033376 original size:24 final size:22
Alignment explanation
Indices: 63033333--63033393 Score: 86
Period size: 24 Copynumber: 2.7 Consensus size: 22
63033323 ACATGTTATC
*
63033333 TTATGTATATATCTTAACTATA
1 TTATGTATATATTTTAACTATA
63033355 TTATGTATATATTTTAACACTATA
1 TTATGTATATATTTT-A-ACTATA
*
63033379 TTATGTACATATTTT
1 TTATGTATATATTTT
63033394 TAATATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.40
23 1 0.03
24 20 0.57
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.52
Consensus pattern (22 bp):
TTATGTATATATTTTAACTATA
Found at i:63036421 original size:93 final size:93
Alignment explanation
Indices: 63036314--63036482 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
63036304 GCCCCTAAGT
* * *
63036314 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63036379 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
63036407 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63036472 CGAGTTCGGAT
66 CGAGTTCGGAT
63036483 ACTCAACCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63036481 original size:46 final size:46
Alignment explanation
Indices: 63036309--63036481 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
63036299 AACCCGCCCC
* * * *
63036309 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
* *
63036355 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
63036403 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
63036448 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63036482 TACTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:63036938 original size:30 final size:30
Alignment explanation
Indices: 63036904--63036963 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
63036894 ATTTAATACG
63036904 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
63036934 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
63036964 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:63037902 original size:27 final size:27
Alignment explanation
Indices: 63037872--63038059 Score: 232
Period size: 27 Copynumber: 7.0 Consensus size: 27
63037862 AGGGCAAAAT
* * *
63037872 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63037899 GGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
63037926 GTTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63037953 GGCAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63037980 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
63038007 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63038034 GGTAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
63038060 TGATATTTTA
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63038147 original size:54 final size:54
Alignment explanation
Indices: 63038050--63038257 Score: 188
Period size: 54 Copynumber: 3.9 Consensus size: 54
63038040 TCTACCCTAT
* * * * * *
63038050 AGGGGTATTTTGAT-ATTTTACAAATCAAGAGTATTTCGATAATTTCACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * *
63038103 AGGGGTATTTTGGTAATTTTA-AAAGTCAGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAA-CCAAGGGTATTTTGGTAATTTTACAAATC
* * * * * * **
63038157 AGAGGTATTTTAGTAATTCTACATACCAGGGGTATTTTTGTAATTTTATTAAT-
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* ** *
63038210 TGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT
63038258 GTGAATCGAG
Statistics
Matches: 126, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
53 17 0.13
54 107 0.85
55 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
Found at i:63038172 original size:27 final size:27
Alignment explanation
Indices: 63038053--63038257 Score: 150
Period size: 27 Copynumber: 7.6 Consensus size: 27
63038043 ACCCTATAGG
* *
63038053 GGTATTTTGAT-ATTTTACAAATCA-A
1 GGTATTTTGGTAATTTTACAAACCAGA
* * * * *
63038078 GAGTATTTCGATAATTTCACAAATCAGG
1 G-GTATTTTGGTAATTTTACAAACCAGA
* *
63038106 GGTATTTTGGTAATTTTA-AAAGTCAGG
1 GGTATTTTGGTAATTTTACAAA-CCAGA
63038133 GGTATTTTGGTAATTTTACAAACCAGA
1 GGTATTTTGGTAATTTTACAAACCAGA
* * * *
63038160 GGTATTTTAGTAATTCTACATACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
* ** **
63038187 GGTATTTTTGTAATTTTATTAA-TTGA
1 GGTATTTTGGTAATTTTACAAACCAGA
**
63038213 GGGTATTTTGGTAATTTTGTAAACCA-A
1 -GGTATTTTGGTAATTTTACAAACCAGA
*
63038240 GGGTATTTTAGTAATTTT
1 -GGTATTTTGGTAATTTT
63038258 GTGAATCGAG
Statistics
Matches: 147, Mismatches: 26, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
25 1 0.01
26 13 0.09
27 129 0.88
28 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGA
Found at i:63038191 original size:81 final size:81
Alignment explanation
Indices: 63038050--63038256 Score: 235
Period size: 81 Copynumber: 2.6 Consensus size: 81
63038040 TCTACCCTAT
* * * *
63038050 AGGGGTATTTTGAT-ATTTTACAAATCAAGAGTA-TTTCGATAATTTCACAAATCAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAG-GTATTTTAG-TAATTTCACAAACCAGGGGTATTT
63038113 TGGTAATTTTA-AAAGTC
64 TGGTAATTTTATAAAGTC
*
63038130 AGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTAGTAA-TTCTACATACCAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCA-AGGTATTTTAGTAATTTC-ACAAACCAGGGGTATTT
* * * *
63038194 TTGTAATTTTATTAATTG
64 TGGTAATTTTATAAAGTC
**
63038212 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAA-GGTATTTTAGTAATTT
63038257 TGTGAATCGA
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
80 17 0.16
81 80 0.73
82 12 0.11
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTG
GTAATTTTATAAAGTC
Found at i:63038280 original size:27 final size:27
Alignment explanation
Indices: 63038261--63038613 Score: 373
Period size: 27 Copynumber: 13.3 Consensus size: 27
63038251 TAATTTTGTG
* *
63038261 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63038288 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63038315 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
63038342 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63038369 AATCG-GGGATAAAACGATAATTCTATA
1 AATCGAGGG-TAAAACGGTAATTCTATA
* *
63038396 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63038423 AATTGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63038450 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63038477 AATTGAGGGT---A----AATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
63038497 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63038524 AATCGAGGGTAAAATGGTAATTCT-TAA
1 AATCGAGGGTAAAACGGTAATTCTAT-A
** * *
63038551 AATTAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63038578 AATCGAGGGTAGAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63038605 AATTGAGGG
1 AATCGAGGG
63038614 CATTTCAGTA
Statistics
Matches: 282, Mismatches: 33, Indels: 22
0.84 0.10 0.07
Matches are distributed among these distances:
20 18 0.06
23 1 0.00
24 1 0.00
26 4 0.01
27 254 0.90
28 4 0.01
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:63038280 original size:54 final size:54
Alignment explanation
Indices: 63038181--63038284 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
63038171 AATTCTACAT
* * * * ****
63038181 ACCAGGGGTATTTTTGTAATTTTATTAATTGAGGGTATTTTGGTAATTTTGTAA
1 ACCAAGGGTATTTTAGTAATTTTATGAATCGAGGGTAAAACGGTAATTTTGTAA
*
63038235 ACCAAGGGTATTTTAGTAATTTTGTGAATCGAGGGTAAAACGGTAATTTT
1 ACCAAGGGTATTTTAGTAATTTTATGAATCGAGGGTAAAACGGTAATTTT
63038285 AAAAATCGAG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (54 bp):
ACCAAGGGTATTTTAGTAATTTTATGAATCGAGGGTAAAACGGTAATTTTGTAA
Found at i:63038493 original size:20 final size:20
Alignment explanation
Indices: 63038468--63038509 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
63038458 GTAAAATGGT
*
63038468 AATTCTATAAATTGAGGGTA
1 AATTCTATAAATCGAGGGTA
63038488 AATTCTATAAATCGAGGGTA
1 AATTCTATAAATCGAGGGTA
63038508 AA
1 AA
63038510 ATGATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (20 bp):
AATTCTATAAATCGAGGGTA
Found at i:63038505 original size:47 final size:47
Alignment explanation
Indices: 63038441--63038536 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 47
63038431 GTAAAACGGT
* * * *
63038441 AATTTTATAAATTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTA
1 AATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTA
* *
63038488 AATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
1 AATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTA
63038535 AA
1 AA
63038537 ATGGTAATTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (47 bp):
AATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTA
Found at i:63038625 original size:54 final size:54
Alignment explanation
Indices: 63038514--63038633 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
63038504 GGTAAAATGA
* * *
63038514 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTTAAAATTAAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTTAAAATTAAGGGCAAAACAG
* * ***
63038568 TAATTTTGTAAATCGAGGGTAGAACGGTAATT-TTACAAATTGAGGGCATTTCAG
1 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTTA-AAATTAAGGGCAAAACAG
*
63038622 TAATTTGGTAAA
1 TAATTTTGTAAA
63038634 CTAAAGTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 3 0.05
54 53 0.95
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.33
Consensus pattern (54 bp):
TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTTAAAATTAAGGGCAAAACAG
Done.