Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 189 of 332
Found at i:63038626 original size:155 final size:155
Alignment explanation
Indices: 63038261--63038613 Score: 424
Period size: 155 Copynumber: 2.2 Consensus size: 155
63038251 TAATTTTGTG
* * * **
63038261 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAA-CGATAATTCTATAAATCAAGGGT
1 AATCGAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAATAG-TAATTCTATAAATTGAGGGT
63038325 AAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGGGGATAAAACGATAAT
65 ---A----AATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGGGGATAAAACGATAAT
* *
63038390 TCTATAAATTGAGGGTAAAATGGTAATTCTATA
123 TCTATAAATTAAGGGTAAAACGGTAATTCTATA
* * *
63038423 AATTGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAATAGTAATTCTATAAATTGAGGGTA
** * * * *
63038488 AATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGG-TAAAATGGTAATTCT-TAA
66 AATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCG-GGGATAAAACGATAATTCTAT-A
* *
63038551 AATTAAGGGTAAAACGGTAATTTTGTA
129 AATTAAGGGTAAAACGGTAATTCTATA
*
63038578 AATCGAGGGTAGAACGGTAATTTTACAAATTGAGGG
1 AATCGAGGGTAAAACGGTAATTTTACAAATTGAGGG
63038614 CATTTCAGTA
Statistics
Matches: 169, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
154 1 0.01
155 107 0.63
156 3 0.02
159 1 0.01
162 56 0.33
163 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.30
Consensus pattern (155 bp):
AATCGAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAATAGTAATTCTATAAATTGAGGGTA
AATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGGGGATAAAACGATAATTCTATAAA
TTAAGGGTAAAACGGTAATTCTATA
Found at i:63041019 original size:25 final size:25
Alignment explanation
Indices: 63041002--63041049 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63040992 GCCTCTTTTT
63041002 ATAAACTGGGGCAAAGCCCTTTTCG
1 ATAAACTGGGGCAAAGCCCTTTTCG
* *
63041027 GTAAACTGGGGCATAGCCCTTTT
1 ATAAACTGGGGCAAAGCCCTTTT
63041050 AGCACTTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
ATAAACTGGGGCAAAGCCCTTTTCG
Found at i:63041282 original size:27 final size:27
Alignment explanation
Indices: 63041252--63041495 Score: 305
Period size: 27 Copynumber: 9.0 Consensus size: 27
63041242 GGGGCAAAAT
* * *
63041252 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63041279 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63041306 AGTATTTCTACCCGACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
63041333 GACAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
63041360 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63041387 GGTAATTCTATCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
63041414 GGTAATTCTACCCTA-TAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
63041441 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63041468 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63041495 G
1 G
63041496 ATATTTTACA
Statistics
Matches: 190, Mismatches: 22, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
26 7 0.04
27 177 0.93
28 6 0.03
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63041396 original size:81 final size:81
Alignment explanation
Indices: 63041255--63041496 Score: 344
Period size: 81 Copynumber: 3.0 Consensus size: 81
63041245 GCAAAATGGT
* * * * *
63041255 AATTTTACCCCACAAGGG-TATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
1 AATTCTACCCTAC-AGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
*
63041319 GACAAGGGTATTTCGAC
65 TACAAGGGTATTTCGAC
*
63041336 AATTCTACCCTACAGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCT
1 AATTCTACCCTACAGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
**
63041401 AC-AGGGTTATTTCGGT
66 ACAAGGG-TATTTCGAC
*
63041417 AATTCTACCCTATAGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
1 AATTCTACCCTACAGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
* *
63041482 ATAGGGGTATTTCGA
66 ACAAGGGTATTTCGA
63041497 TATTTTACAA
Statistics
Matches: 144, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
80 8 0.06
81 133 0.92
82 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (81 bp):
AATTCTACCCTACAGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
ACAAGGGTATTTCGAC
Found at i:63041524 original size:26 final size:26
Alignment explanation
Indices: 63041488--63041540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
63041478 CCCTATAGGG
*
63041488 GTATTTCGAT-ATTTTACAAATCGAGA
1 GTATTTCGATAATTTCACAAATC-AGA
63041514 GTATTTCGATAATTTCACAAATCAGA
1 GTATTTCGATAATTTCACAAATCAGA
63041540 G
1 G
63041541 GTACTTTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (26 bp):
GTATTTCGATAATTTCACAAATCAGA
Found at i:63041553 original size:27 final size:26
Alignment explanation
Indices: 63041498--63041684 Score: 99
Period size: 27 Copynumber: 7.2 Consensus size: 26
63041488 GTATTTCGAT
* *
63041498 ATTTTACAAATC-GAGAGTATTTCGATA
1 ATTTTACAAACCAGAG-GTATTT-GGTA
* *
63041525 ATTTCACAAATCAGAGGTACTTTGGTA
1 ATTTTACAAACCAGAGGTA-TTTGGTA
*
63041552 ATTTTA-AAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAA-CCAGAGGTA-TTTGGTA
63041579 ATTTTACAAACC--AGG-----GGTA
1 ATTTTACAAACCAGAGGTATTTGGTA
*
63041598 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGAGGTA-TTTGGTA
* **
63041625 ATTTTACTAA-TTGAGGGTATTTTGGTA
1 ATTTTACAAACCAGA-GGTA-TTTGGTA
** *
63041652 ATTTTGTAAACCA-ATGGTATTTTAGTA
1 ATTTTACAAACCAGA-GGTA-TTTGGTA
63041679 ATTTTA
1 ATTTTA
63041685 TAAATCGAGG
Statistics
Matches: 126, Mismatches: 20, Indels: 28
0.72 0.11 0.16
Matches are distributed among these distances:
19 16 0.13
21 2 0.02
25 2 0.02
26 4 0.03
27 93 0.74
28 9 0.07
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
ATTTTACAAACCAGAGGTATTTGGTA
Found at i:63041581 original size:54 final size:51
Alignment explanation
Indices: 63041514--63041694 Score: 158
Period size: 54 Copynumber: 3.5 Consensus size: 51
63041504 CAAATCGAGA
* * *
63041514 GTATTTCGATAATTTCACAAATCAGAGGTACTTTGGTAATTTTAAAAGCCAGGG
1 GTATTTTGGTAATTTTACAAATC-GAGGTA-TTTGGTAATTTTAAAA-CCAGGG
*
63041568 GTATTTTGGTAATTTTACAAA-CCAGG-----GGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATCGAGGTATTTGGTAATTTTA-AAACCAGGG
* * * **
63041614 GTATTTTGGTAATTTTACTAATTGAGGGTATTTTGGTAATTTTGTAAACCAATG
1 GTATTTTGGTAATTTTACAAATCGA-GGTA-TTTGGTAATTTT-AAAACCAGGG
* *
63041668 GTATTTTAGTAATTTTATAAATCGAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
63041695 GTAAAACAGT
Statistics
Matches: 103, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
46 36 0.35
47 4 0.04
48 2 0.02
52 3 0.03
53 3 0.03
54 55 0.53
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (51 bp):
GTATTTTGGTAATTTTACAAATCGAGGTATTTGGTAATTTTAAAACCAGGG
Found at i:63041599 original size:19 final size:19
Alignment explanation
Indices: 63041575--63041620 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
63041565 GGGGTATTTT
63041575 GGTAATTTTACAAACCAGG
1 GGTAATTTTACAAACCAGG
63041594 GGTAATTTTACAAACCAGG
1 GGTAATTTTACAAACCAGG
63041613 GGT-ATTTT
1 GGTAATTTT
63041621 GGTAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (19 bp):
GGTAATTTTACAAACCAGG
Found at i:63041688 original size:27 final size:27
Alignment explanation
Indices: 63041594--63041697 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 27
63041584 ACAAACCAGG
* *
63041594 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
***
63041621 GGTAATTTTACT-AATTGAGGGTATTTT
1 GGTAATTTTA-TAAACCAAGGGTATTTT
* *
63041648 GGTAATTTTGTAAACCAATGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
* * *
63041675 AGTAATTTTATAAATCGAGGGTA
1 GGTAATTTTATAAACCAAGGGTA
63041698 AAACAGTAAT
Statistics
Matches: 60, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
26 1 0.02
27 59 0.98
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTAATTTTATAAACCAAGGGTATTTT
Found at i:63041705 original size:27 final size:27
Alignment explanation
Indices: 63041676--63042066 Score: 402
Period size: 27 Copynumber: 14.7 Consensus size: 27
63041666 TGGTATTTTA
* **
63041676 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
63041703 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
63041730 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
63041757 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
63041784 GTAACTCTATAAATCAACGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
**
63041811 GTAATTCTATAAATCGAGGGTAAAACC
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *** *
63041838 TTAATTCTGTAAATCCAATATCAAACT-
1 GTAATTCTATAAATCGAGGGT-AAAATG
*
63041865 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
63041892 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
63041919 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
63041946 GTAATTTTATAAATTGAGGGT---A--
1 GTAATTCTATAAATCGAGGGTAAAATG
63041968 --AATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
63041993 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
63042020 ATAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
63042047 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
63042067 CATTTCAGTA
Statistics
Matches: 303, Mismatches: 52, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
20 17 0.06
23 1 0.00
24 1 0.00
26 4 0.01
27 277 0.91
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:63041976 original size:20 final size:20
Alignment explanation
Indices: 63041948--63041989 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
63041938 GTAAAATGGT
* *
63041948 AATTTTATAAATTGAGGGTA
1 AATTCTATAAATCGAGGGTA
63041968 AATTCTATAAATCGAGGGTA
1 AATTCTATAAATCGAGGGTA
63041988 AA
1 AA
63041990 ATGGTAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (20 bp):
AATTCTATAAATCGAGGGTA
Found at i:63042015 original size:74 final size:74
Alignment explanation
Indices: 63041894--63042043 Score: 246
Period size: 74 Copynumber: 2.0 Consensus size: 74
63041884 GTAAAATGGT
* **
63041894 AATTCTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAA
1 AATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTTTATAAA
*
63041959 TTGAGGGTA
66 TCGAGGGTA
* *
63041968 AATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTTTGTAAA
1 AATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTTTATAAA
63042033 TCGAGGGTA
66 TCGAGGGTA
63042042 AA
1 AA
63042044 ACGGTAATTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (74 bp):
AATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTTTATAAA
TCGAGGGTA
Found at i:63044080 original size:25 final size:25
Alignment explanation
Indices: 63044059--63044128 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
63044049 CTCTTTTAAT
63044059 AACTAGGGCAAAGCCCTTTTTTATA
1 AACTAGGGCAAAGCCCTTTTTTATA
* ***
63044084 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTTTATA
* *
63044109 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
63044129 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTTTATA
Found at i:63044361 original size:27 final size:27
Alignment explanation
Indices: 63044331--63044533 Score: 230
Period size: 27 Copynumber: 7.6 Consensus size: 27
63044321 GGGGCAAAAT
* * *
63044331 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63044358 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63044385 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
63044412 -GCAATTCTACCCTACAGGGGCATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
63044438 AGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63044465 GGTAATTCTATCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * *
63044492 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63044519 GGTAATTCTATCCTA
1 GGTAATTCTACCCTA
63044534 TAGGAGGTAC
Statistics
Matches: 151, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
26 24 0.16
27 124 0.82
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63044474 original size:80 final size:81
Alignment explanation
Indices: 63044359--63044553 Score: 243
Period size: 80 Copynumber: 2.4 Consensus size: 81
63044349 GGGTATCTCG
* * *
63044359 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTC-GCAATTCTAC
1 GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTAC-AGGGTTATTTCAGCAATTCTAC
*
63044422 CCTACAGGGGCATTTTA
65 CCTACAGGGGCATTTCA
* * * *
63044439 GTAATTTTACCCTATAGGGGTATTTCGGTAATTCTATCCTACAGGGTTATTTCAGTAATTCTATC
1 GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGCAATTCTACC
* *
63044504 CTACAGGGGTATTTCG
66 CTACAGGGGCATTTCA
*
63044520 GTAATTCTATCCTATAGGAGGTACTTT-GGTAATT
1 GTAATTCTACCCTATAGG-GGTA-TTTCGGTAATT
63044554 TTAAAAGCCA
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.04
80 43 0.43
81 38 0.38
82 11 0.11
83 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGCAATTCTACC
CTACAGGGGCATTTCA
Found at i:63044507 original size:107 final size:109
Alignment explanation
Indices: 63044332--63044556 Score: 285
Period size: 107 Copynumber: 2.1 Consensus size: 109
63044322 GGGCAAAATG
* *
63044332 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
1 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
*
63044397 CTACAAGGGTATTTC-GCAATTCTACCCTACAGG-GGCATTTTA
66 CTACAAGGGTATTTCGGCAATTCTACCCTACAGGAGGCACTTTA
* * * * * *
63044439 GTAATTTTACCCTATAGGGGTATTTCGGTAATTCTATCCTAC-AGGGTTATTTCAGTAATTCTAT
1 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGG-TATTTCAGTAATTCTAC
* * * * * *
63044503 CCTACAGGGGTATTTCGGTAATTCTATCCTATAGGAGGTACTTTG
65 CCTACAAGGGTATTTCGGCAATTCTACCCTACAGGAGGCACTTTA
63044548 GTAATTTTA
1 GTAATTTTA
63044557 AAAGCCAGCG
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 4 0.04
107 66 0.66
108 15 0.15
109 15 0.15
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (109 bp):
GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCGGCAATTCTACCCTACAGGAGGCACTTTA
Found at i:63044574 original size:27 final size:26
Alignment explanation
Indices: 63044539--63044690 Score: 155
Period size: 27 Copynumber: 5.7 Consensus size: 26
63044529 TCCTATAGGA
*
63044539 GGTACTTTGGTAATTTTA-AAAGCCAG
1 GGTATTTTGGTAATTTTACAAA-CCAG
*
63044565 CGGTATTTTGGTAATTTTACAAACTAGG
1 -GGTATTTTGGTAATTTTACAAACCA-G
63044593 GGTA-TTTGAGTAATTTTACAAACCAGG
1 GGTATTTTG-GTAATTTTACAAACCA-G
* * *
63044620 GGTATTTTGGTAATTTTACTGATCAAG
1 GGTATTTTGGTAATTTTAC-AAACCAG
**
63044647 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACC-AG
*
63044674 GGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTT
63044691 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.06
27 90 0.84
28 11 0.10
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAG
Found at i:63044624 original size:54 final size:52
Alignment explanation
Indices: 63044507--63044690 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 52
63044497 TTCTATCCTA
* * **
63044507 CAGGGGTATTTCGGTAATTCTATCCTATAGGAGGTACTTTGGTAATTTTAAAAGC
1 CAGGGGTATTTTGGTAATTTTA-CAAATAGG-GGTACTTTGGTAATTTTAAAA-C
*
63044562 CAGCGGTATTTTGGTAATTTTACAAACTAGGGGTA-TTTGAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAA-TAGGGGTACTTTG-GTAATTTTA-AAAC
** * * *
63044616 CAGGGGTATTTTGGTAATTTTACTGATCAAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAT-AGGGGTACTTTGGTAATTTT-AAAAC
* *
63044670 CAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
63044691 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 12, Indels: 13
0.82 0.09 0.10
Matches are distributed among these distances:
53 5 0.05
54 76 0.68
55 30 0.27
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (52 bp):
CAGGGGTATTTTGGTAATTTTACAAATAGGGGTACTTTGGTAATTTTAAAAC
Found at i:63044712 original size:27 final size:27
Alignment explanation
Indices: 63044683--63044999 Score: 348
Period size: 27 Copynumber: 11.7 Consensus size: 27
63044673 GGGTATTTTA
* * *
63044683 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63044710 GTAA-TCTTATAAAACGAGGGTAAAACA
1 GTAATTC-TATAAATCGAGGGTAAAACG
* * *
63044737 GTAATTTTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
63044764 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63044791 GGAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
63044818 GTAATTTTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63044845 GCATTTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
63044872 ATGATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63044899 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
63044926 ATAATTCTGTAAATCGAGAGTTAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
63044953 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
63044980 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
63045000 CATTTTAGTA
Statistics
Matches: 250, Mismatches: 38, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 248 0.99
28 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:63044999 original size:81 final size:81
Alignment explanation
Indices: 63044655--63044993 Score: 403
Period size: 81 Copynumber: 4.2 Consensus size: 81
63044645 AGGGTATTTT
* * *** * * *
63044655 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC-AGTAA-TCTT
1 GGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTC-T
*
63044718 ATAAAACGAGGGTAAAAC
64 ATAAATCGAGGGTAAAAC
* * **
63044736 AGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGGAATTCTAT
1 GGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
*
63044801 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAAAC
* * *
63044817 GGTAATTTTATAAATCAAGGGTAAAATGGCATTTCTATAAATCGAGGGTAAAACGATGATTCTAT
1 GGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
* *
63044882 AAATCAAGGGTAAAAT
66 AAATCGAGGGTAAAAC
* * * * * * *
63044898 GATAATTCTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGAGTTAAACGATAATTCTAT
1 GGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
63044963 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
*
63044979 GGTAATTTTACAAAT
1 GGTAATTTTATAAAT
63044994 TGAGGGCATT
Statistics
Matches: 219, Mismatches: 37, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 217 0.99
82 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (81 bp):
GGTAATTTTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
AAATCGAGGGTAAAAC
Found at i:63062652 original size:42 final size:42
Alignment explanation
Indices: 63062552--63062685 Score: 171
Period size: 43 Copynumber: 3.1 Consensus size: 42
63062542 AGCTCGTACA
*
63062552 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
* *
63062595 ATGCCACTGTTCCAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
* * *
63062637 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATG-AAATCA-AATACG
63062681 ATGCC
1 ATGCC
63062686 GACACCCCAG
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 28 0.35
43 41 0.51
44 11 0.14
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
Found at i:63062696 original size:44 final size:42
Alignment explanation
Indices: 63062562--63062713 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 42
63062552 ATGCCAATGT
* * * * **
63062562 CCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTGT
1 CCCAGACATGGTCTTACACGAAATCAAAGA-CGATGCCAAC-AC
* * * * ***
63062605 TCCAGACAGGGTCTTACATGAAATCAAATACGATGCCAATGT
1 CCCAGACATGGTCTTACACGAAATCAAAGACGATGCCAACAC
*
63062647 CCCAGACATGGTCTTACACGTAAATCATAAGACGATGCCGACAC
1 CCCAGACATGGTCTTACACG-AAATCA-AAGACGATGCCAACAC
**
63062691 CCCAGATGTGGTCTTACACGAAA
1 CCCAGACATGGTCTTACACGAAA
63062714 ACACATATCG
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
42 26 0.29
43 36 0.40
44 29 0.32
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
CCCAGACATGGTCTTACACGAAATCAAAGACGATGCCAACAC
Found at i:63084045 original size:47 final size:47
Alignment explanation
Indices: 63083985--63084106 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
63083975 GAATTAGCAC
*
63083985 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGCCATTTAG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGCCATTTAG
* *
63084032 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGCCATTTAG
* *
63084079 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
63084107 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGCCATTTAG
Found at i:63084214 original size:55 final size:54
Alignment explanation
Indices: 63084085--63084281 Score: 211
Period size: 55 Copynumber: 3.6 Consensus size: 54
63084075 TTGGTAAGAT
* * *
63084085 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGA-GAAGTCCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATG-AGTTCTATAAGGC
* * *
63084139 AAGGAAATCATGTAAGACCATGTAAAGGCATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * * *
63084194 AAAGG-TCCCATGTAAGACCATGGCAAGGTATGGCATTGGTGAGTTC-ATAAGAC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGC
** * *
63084247 AAGGATACCACATAAGACCATGTTAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCA
63084282 ATAGTAAGTT
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 40 0.33
55 43 0.36
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:63084280 original size:53 final size:55
Alignment explanation
Indices: 63084151--63084281 Score: 142
Period size: 53 Copynumber: 2.4 Consensus size: 55
63084141 GGAAATCATG
* * **
63084151 TAAGACCATGTAAAGGCATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATG
1 TAAGACCATGTAAAGGCATGGCATTGATGAGTTACTATAAGACAAAGGTACCACA
** * *
63084206 TAAGACCATGGCAAGGTATGGCATTGGTGAGTT-C-ATAAGAC-AAGGATACCACA
1 TAAGACCATGTAAAGGCATGGCATTGATGAGTTACTATAAGACAAAGG-TACCACA
* *
63084259 TAAGACCATGTTAAGACATGGCA
1 TAAGACCATGTAAAGGCATGGCA
63084282 ATAGTAAGTT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.06
53 29 0.46
54 1 0.02
55 29 0.46
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (55 bp):
TAAGACCATGTAAAGGCATGGCATTGATGAGTTACTATAAGACAAAGGTACCACA
Found at i:63090269 original size:47 final size:47
Alignment explanation
Indices: 63090212--63090333 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
63090202 GCATTAGCAC
63090212 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
63090259 TAAGACAAGGATACGATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
63090306 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
63090334 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:63090387 original size:54 final size:54
Alignment explanation
Indices: 63090312--63090508 Score: 238
Period size: 55 Copynumber: 3.6 Consensus size: 54
63090302 TTGGTAAGAT
* * **
63090312 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGACAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
63090366 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
** * * * *
63090421 AAAGG-TCCCATGTAAGACCAAGACAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
63090474 AAGGATA-CTACGTAAGACCATGTCAAGACATGGCA
1 AAGGATATC-ATGTAAGACCATGTCAAGACATGGCA
63090509 ATGTTAAGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
52 5 0.04
53 30 0.25
54 41 0.34
55 42 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:63092278 original size:7 final size:7
Alignment explanation
Indices: 63092262--63092297 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
63092252 AAATGACTGA
63092262 AAACCCT
1 AAACCCT
*
63092269 AAATCCT
1 AAACCCT
63092276 AAACCCT
1 AAACCCT
*
63092283 AAACCAT
1 AAACCCT
63092290 AAACCCT
1 AAACCCT
63092297 A
1 A
63092298 GGCCCCTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.17
Consensus pattern (7 bp):
AAACCCT
Found at i:63092333 original size:27 final size:27
Alignment explanation
Indices: 63092299--63092616 Score: 357
Period size: 27 Copynumber: 11.8 Consensus size: 27
63092289 TAAACCCTAG
* * *
63092299 GCCCCTATACGGTAAAATGACCTTAGT
1 GCCCCTATAGGGTAAAATGACCGTAAT
63092326 GCCCCTATAGGGTAAAATGACCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* *
63092353 GCCTCTATAGGGTAAAATGACCATAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
** *
63092380 GCTTCTATAGGTTAAAATGACCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
*
63092407 GCCCTTATAGGGTAAAATGACCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* * * *
63092434 GCCCTTGTAAGGTAAAATGACCATAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* * *
63092461 GCCCTTGTAAGGTAAAATGACCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* *
63092488 GCTCCTAGAGGGTAAAATGACCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* * * **
63092515 GCCCTTGTAAGGTAAAATGATTGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* *
63092542 GCCCTTGTAGGGTAAAATGACCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* * *
63092569 GCCCCTGTAGGGTAAACTGATCGTAAT
1 GCCCCTATAGGGTAAAATGACCGTAAT
* * *
63092596 ACCCCTGTATGGTAAAATGAC
1 GCCCCTATAGGGTAAAATGAC
63092617 GATTATGCCC
Statistics
Matches: 253, Mismatches: 38, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 253 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
GCCCCTATAGGGTAAAATGACCGTAAT
Found at i:63092625 original size:81 final size:81
Alignment explanation
Indices: 63092309--63092628 Score: 408
Period size: 81 Copynumber: 4.0 Consensus size: 81
63092299 GCCCCTATAC
* * * * *
63092309 GGTAAAATGACCTTAGTGCCCCTATAGGGTAAAATGACCGTAATGCCTCTATAGGGTAAAATGAC
1 GGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGAC
* *
63092374 CATAATG-CTTCTATAG
66 CATAATGCCCT-TGTAG
* * *
63092390 GTTAAAATGACCGTAATGCCCTTATAGGGTAAAATGACCGTAATGCCCTTGTAAGGTAAAATGAC
1 GGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGAC
*
63092455 CATAATGCCCTTGTAA
66 CATAATGCCCTTGTAG
* * * *
63092471 GGTAAAATGACCGTAATGCTCCTAGAGGGTAAAATGACCGTAATGCCCTTGTAAGGTAAAATGAT
1 GGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGAC
**
63092536 TGTAATGCCCTTGTAG
66 CATAATGCCCTTGTAG
* * * * *
63092552 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAACTGATCGTAATACCCCTGTATGGTAAAATGAC
1 GGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGAC
* *
63092617 GATTATGCCCTT
66 CATAATGCCCTT
63092629 ATGTTTCGTA
Statistics
Matches: 207, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 205 0.99
82 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (81 bp):
GGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGAC
CATAATGCCCTTGTAG
Found at i:63092812 original size:27 final size:27
Alignment explanation
Indices: 63092782--63092834 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
63092772 CATTCACTGT
63092782 TACTGGTGGCTATGCCACAATTACTAA
1 TACTGGTGGCTATGCCACAATTACTAA
* *
63092809 TACTGGTGGCTTTGCCACACTTACTA
1 TACTGGTGGCTATGCCACAATTACTA
63092835 TTCTGGCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTAA
Found at i:63093061 original size:33 final size:33
Alignment explanation
Indices: 63092988--63093078 Score: 93
Period size: 28 Copynumber: 2.9 Consensus size: 33
63092978 TGCATTACAC
* * *
63092988 TGTACTGATACTGTATTGGTCTTAGGCCCACAT
1 TGTACTGATACTGTATAGGGCTAAGGCCCACAT
*
63093021 TG---T--TACTGTATAGGGCTAAGGCCCAGAT
1 TGTACTGATACTGTATAGGGCTAAGGCCCACAT
* *
63093049 TGTACTGATACTGAATAGGGCTCAGGCCCA
1 TGTACTGATACTGTATAGGGCTAAGGCCCA
63093079 AACTGTTACT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
28 23 0.49
30 1 0.02
31 1 0.02
33 22 0.47
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (33 bp):
TGTACTGATACTGTATAGGGCTAAGGCCCACAT
Found at i:63100679 original size:21 final size:21
Alignment explanation
Indices: 63100638--63100679 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
63100628 TATTTAATCC
*
63100638 AAATTAAATTAAATTGGATTA
1 AAATTAAATTAAATTAGATTA
*
63100659 AAATTAAAATT-AATTATATTA
1 AAATT-AAATTAAATTAGATTA
63100680 TGAATTAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAATTAAATTAAATTAGATTA
Found at i:63100856 original size:22 final size:21
Alignment explanation
Indices: 63100814--63100856 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
63100804 ATACTTGTCG
**
63100814 AAAATAATAAAAATTTGATAT
1 AAAATAATAAAAATTCAATAT
*
63100835 AAAATTAATTAAAATTCAATAT
1 AAAA-TAATAAAAATTCAATAT
63100857 GTTCATAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAATAATAAAAATTCAATAT
Found at i:63102424 original size:18 final size:18
Alignment explanation
Indices: 63102403--63102439 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
63102393 CTAAGGGATA
63102403 AAATAAAATAAAGTAGAG
1 AAATAAAATAAAGTAGAG
63102421 AAATAAAATAAAGTAGAG
1 AAATAAAATAAAGTAGAG
63102439 A
1 A
63102440 CAAGATCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (18 bp):
AAATAAAATAAAGTAGAG
Found at i:63103854 original size:46 final size:47
Alignment explanation
Indices: 63103748--63103869 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 47
63103738 TGTCTTCGAC
* * *
63103748 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
63103798 ATGGGCTTACATGCCTCATTCCTGTCTCCAAAGCC-ATATATC-AGAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTA-AT
* *
63103844 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
63103870 CTGTCCTATC
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.02
46 32 0.51
50 30 0.48
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:63118518 original size:40 final size:40
Alignment explanation
Indices: 63118444--63118537 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
63118434 GACTATGTTT
* * *
63118444 GGCACTAAGTGTGCGATTTAAAATTGCTTTGGCTATAAGTA
1 GGCACTAAGTGTGCGAATTAAAATAGCTTCGGCTATAAG-A
* ** *
63118485 -GCACTATGTGTGCGAATTGGAATAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGAATTAAAATAGCTTCGGCTATAAGA
63118524 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
63118538 AATACCGAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTAAAATAGCTTCGGCTATAAGA
Found at i:63124682 original size:46 final size:46
Alignment explanation
Indices: 63124632--63124800 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
63124622 TGAGCATCCG
* *
63124632 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
* * *
63124678 AACTCGTTGAGTTGAGTCCGAGTT--C-T-TGAAATGTAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG--TCCA
* * *
63124725 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
*
63124771 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
63124801 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 54 0.52
47 28 0.27
48 2 0.02
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
Found at i:63124784 original size:93 final size:93
Alignment explanation
Indices: 63124625--63124795 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
63124615 GGATGGTTGA
* * * *
63124625 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
63124690 TGAGTCCGAGTTCTTGAAATGTAACTAG
66 TGAGTCCGAGTTCTTGAAATGTAACTAG
* * *
63124718 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
63124783 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63124796 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCTTGAAATGTAACTAG
Found at i:63132192 original size:46 final size:46
Alignment explanation
Indices: 63132142--63132314 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
63132132 TGGTTGAGCA
*
63132142 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
63132188 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-T-TGAAATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
* * *
63132233 CATCCAAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
63132281 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63132315 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 56 0.54
47 26 0.25
48 2 0.02
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:63132298 original size:93 final size:93
Alignment explanation
Indices: 63132139--63132309 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
63132129 GGATGGTTGA
* * * * *
63132139 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
63132204 TGAGTCCGAGTTCTTGAAATGTAACTAG
66 TGAGTCCGAGTTCTTGAAATGTAACTAG
* *
63132232 GCATCCAAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
*
63132297 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
63132310 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCTTGAAATGTAACTAG
Found at i:63136202 original size:40 final size:40
Alignment explanation
Indices: 63136137--63136228 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
63136127 GACTATGTTC
* * **
63136137 GGCACTAAGTGTGCGATTTAAAATAGCTTTGGCTATAAGTA
1 GGCACTAAGTGTACGAATTAAAATAGCTTCAGCTATAAG-A
** *
63136178 -GCACTAAGTGTACGAATTGGAATAGCTTCAGCTATATGA
1 GGCACTAAGTGTACGAATTAAAATAGCTTCAGCTATAAGA
63136217 GGCACTAAGTGT
1 GGCACTAAGTGT
63136229 GCGATACCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (40 bp):
GGCACTAAGTGTACGAATTAAAATAGCTTCAGCTATAAGA
Found at i:63137478 original size:67 final size:67
Alignment explanation
Indices: 63137407--63137555 Score: 289
Period size: 67 Copynumber: 2.2 Consensus size: 67
63137397 CACGGCCTGC
*
63137407 CACACGGGTGTGTCTTGTGGCTATGTGGACAAGTCAGTATGTGTGCCCTATTTTACCACAGCCTA
1 CACACGGGCGTGTCTTGTGGCTATGTGGACAAGTCAGTATGTGTGCCCTATTTTACCACAGCCTA
63137472 GA
66 GA
63137474 CACACGGGCGTGTCTTGTGGCTATGTGGACAAGTCAGTATGTGTGCCCTATTTTACCACAGCCTA
1 CACACGGGCGTGTCTTGTGGCTATGTGGACAAGTCAGTATGTGTGCCCTATTTTACCACAGCCTA
63137539 GA
66 GA
63137541 CACACGGGCGTGTCT
1 CACACGGGCGTGTCT
63137556 AATGCCATGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 81 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (67 bp):
CACACGGGCGTGTCTTGTGGCTATGTGGACAAGTCAGTATGTGTGCCCTATTTTACCACAGCCTA
GA
Found at i:63139227 original size:37 final size:37
Alignment explanation
Indices: 63139177--63139255 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63139167 TTATTACGAA
* * *
63139177 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCAG
*
63139214 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCAG
63139251 GTCTT
1 GTCTT
63139256 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCAG
Found at i:63139497 original size:47 final size:47
Alignment explanation
Indices: 63139376--63139811 Score: 683
Period size: 47 Copynumber: 9.1 Consensus size: 47
63139366 CTTCGGGACT
* * * * * *
63139376 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
63139423 TGTCACTTATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63139472 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63139519 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63139566 TATCACATATCTACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63139613 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63139660 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63139709 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63139758 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63139807 TATCA
1 TATCA
63139812 TCATTTCATA
Statistics
Matches: 370, Mismatches: 15, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
47 189 0.51
49 181 0.49
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:63146906 original size:29 final size:29
Alignment explanation
Indices: 63146848--63146975 Score: 206
Period size: 29 Copynumber: 4.5 Consensus size: 29
63146838 ATAGTAAGTC
*
63146848 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
63146876 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
63146905 CGCACACTTTGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
63146934 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
63146962 TGCACACTTAGTGC
1 CGCACACTTAGTGC
63146976 CATGCAATTT
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 39 0.41
29 55 0.59
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:63146995 original size:57 final size:58
Alignment explanation
Indices: 63146848--63147004 Score: 194
Period size: 57 Copynumber: 2.7 Consensus size: 58
63146838 ATAGTAAGTC
* *
63146848 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCATACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * *
63146905 CGCACACTTTGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCATACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
63146962 TGCACACTTAGTGCCATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTG-CATACATAATCAAACTCGCACACTTAGTGC
63147005 CAATCTCATG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 56 0.64
58 32 0.36
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCATACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:63152146 original size:46 final size:46
Alignment explanation
Indices: 63152076--63152251 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
63152066 TGTAACCCGC
63152076 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * * *
63152122 CCATAAGTGAATTCGGACTGAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * * *
63152168 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
63152215 CCATAAGTGAACCCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
63152252 TGCCCAAATA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 70 0.69
47 32 0.31
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:63152196 original size:93 final size:93
Alignment explanation
Indices: 63152084--63152255 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
63152074 GCCCATAAGT
* * ** *
63152084 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAATTCGGACTGAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
63152149 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
63152177 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
*
63152242 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
63152256 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:63154663 original size:15 final size:15
Alignment explanation
Indices: 63154628--63154703 Score: 84
Period size: 15 Copynumber: 5.1 Consensus size: 15
63154618 CAAAGATAAC
*
63154628 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
63154642 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
63154657 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
63154672 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* *
63154687 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
63154702 AA
1 AA
63154704 AAAACCCAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.58, C:0.12, G:0.17, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:63154672 original size:30 final size:30
Alignment explanation
Indices: 63154628--63154716 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
63154618 CAAAGATAAC
*
63154628 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAATCCAGAATAAAGAAATCCAAGATA
* *
63154657 GAGAAATCCAGAATAAAGAAAT-CTAGAATA
1 AAGAAATCCAGAATAAAGAAATCCAAG-ATA
* * * *
63154687 AAGAGATCCAGGATAAAAAAACCCAAGATA
1 AAGAAATCCAGAATAAAGAAATCCAAGATA
63154717 CGATGCTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 10 0.21
30 35 0.73
31 3 0.06
ACGTcount: A:0.58, C:0.13, G:0.16, T:0.12
Consensus pattern (30 bp):
AAGAAATCCAGAATAAAGAAATCCAAGATA
Found at i:63160399 original size:13 final size:13
Alignment explanation
Indices: 63160381--63160405 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63160371 AGGGGGCACA
63160381 TGGCCATGTGTCC
1 TGGCCATGTGTCC
63160394 TGGCCATGTGTC
1 TGGCCATGTGTC
63160406 ACACAGGGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.32, T:0.32
Consensus pattern (13 bp):
TGGCCATGTGTCC
Found at i:63162774 original size:112 final size:112
Alignment explanation
Indices: 63162632--63162860 Score: 449
Period size: 112 Copynumber: 2.0 Consensus size: 112
63162622 TAAGGAAATT
63162632 ATACACAAACCAAAATGTGCCAAAACACAAGCCAAATAAGTTGTAAAACCCCTTACTGTATCCGA
1 ATACACAAACCAAAATGTGCCAAAACACAAGCCAAATAAGTTGTAAAACCCCTTACTGTATCCGA
63162697 TGCTGAAACAAGGTACAAGGCATTACCGGACTTTAACATAAGCAAAC
66 TGCTGAAACAAGGTACAAGGCATTACCGGACTTTAACATAAGCAAAC
*
63162744 ATACACAAACTAAAATGTGCCAAAACACAAGCCAAATAAGTTGTAAAACCCCTTACTGTATCCGA
1 ATACACAAACCAAAATGTGCCAAAACACAAGCCAAATAAGTTGTAAAACCCCTTACTGTATCCGA
63162809 TGCTGAAACAAGGTACAAGGCATTACCGGACTTTAACATAAGCAAAC
66 TGCTGAAACAAGGTACAAGGCATTACCGGACTTTAACATAAGCAAAC
63162856 ATACA
1 ATACA
63162861 AACCGAGACA
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 116 1.00
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (112 bp):
ATACACAAACCAAAATGTGCCAAAACACAAGCCAAATAAGTTGTAAAACCCCTTACTGTATCCGA
TGCTGAAACAAGGTACAAGGCATTACCGGACTTTAACATAAGCAAAC
Found at i:63165981 original size:39 final size:39
Alignment explanation
Indices: 63165927--63166040 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
63165917 ATTTGATGTG
63165927 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
63165966 TATCCGGACTTAGGGTCCGCGGGCTATGTACTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
63166005 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
63166041 ATATTTTTGG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:63166077 original size:78 final size:78
Alignment explanation
Indices: 63165927--63166084 Score: 176
Period size: 78 Copynumber: 2.0 Consensus size: 78
63165917 ATTTGATGTG
* * * ** *
63165927 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCGGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTA
*
63165992 TGTACTGGAATTA
66 TGAACTGGAATTA
* ** *
63166005 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATTTTTGGGC-TAAAGTCTCGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTC-CGCAGGCT
*
63166069 -TCGAACTGGTATTA
65 AT-GAACTGGAATTA
63166083 TA
1 TA
63166085 CCAGGTTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 6 0.09
78 60 0.91
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTA
TGAACTGGAATTA
Found at i:63168339 original size:21 final size:20
Alignment explanation
Indices: 63168315--63168353 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63168305 CTGTGTCAGT
63168315 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
*
63168336 TTCGTTTTTGGCCCATTT
1 TTCGTCTTTGGCCCATTT
63168354 CTCGTTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:63184815 original size:42 final size:41
Alignment explanation
Indices: 63184704--63184816 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 41
63184694 GCCCCATACA
* *
63184704 ATGCCATATCCCAGATATGCTCTTACATGGGATCTCATAGTG
1 ATGCCATATCCCAGATATG-TCTTACACGAGATCTCATAGTG
* * *
63184746 ATGCCAATAGCCCAGCTATGGTCTTACACGTAG-TCTCATATTG
1 ATGCC-ATATCCCAGATAT-GTCTTACACG-AGATCTCATAGTG
*
63184789 TTGCCATATCCCAGATATAGTCTTACAC
1 ATGCCATATCCCAGATAT-GTCTTACAC
63184817 ACAATCTCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 25 0.42
43 32 0.54
44 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGTCTTACACGAGATCTCATAGTG
Found at i:63191598 original size:64 final size:64
Alignment explanation
Indices: 63191517--63191700 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
63191507 AGACATTCTG
* * * * * *
63191517 ATGTAGCTAAGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGATAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCGACGAGATAA
* * * * *
63191581 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCGACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCGACGAGAT
63191646 AA
63 AA
* * *
63191648 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
63191701 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 21 0.22
67 31 0.32
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCGACGAGATAA
Found at i:63200978 original size:39 final size:39
Alignment explanation
Indices: 63200924--63201142 Score: 296
Period size: 39 Copynumber: 5.6 Consensus size: 39
63200914 TGATATTTGA
* *
63200924 GAATTATATCCGGACTAAAAGTCCGCAGGCTATATGCGG
1 GAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGG
* *
63200963 GAATTATATTCGGACTTAAAGTCCGTAGGCTATATGCGA
1 GAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGG
* *
63201002 GAATTATATCCGGACTTAAAGTCTGTAGGCTATATGCGA
1 GAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGG
* *
63201041 GAATTATATCCAGACTTAAAGTCCGTAGGCTATATGCAG
1 GAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGG
* * * **
63201080 GAATTATATGCGAACTTAAGGTCCGTAGGCTACGTGCTGG
1 GAATTATATCCGGACTTAAAGTCCGTAGGCTATATGC-GG
*
63201120 GAA-TATATCCGGGCTTAAAGTCC
1 GAATTATATCCGGACTTAAAGTCC
63201143 CGAAGGCTTT
Statistics
Matches: 158, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 154 0.97
40 4 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (39 bp):
GAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGG
Found at i:63201991 original size:5 final size:5
Alignment explanation
Indices: 63201981--63202005 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63201971 TATGGTATAT
63201981 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
63202006 TACAAGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:63204159 original size:24 final size:25
Alignment explanation
Indices: 63204103--63204161 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
63204093 TACATGTATT
** *
63204103 CTCATACGAGCTCTAAATTGGTATG
1 CTCATACGAGCTCTAAATCAGTAAG
* *
63204128 CTCTTACGAGCTGT-AATCAGTAAG
1 CTCATACGAGCTCTAAATCAGTAAG
63204152 CTCATACGAG
1 CTCATACGAG
63204162 TTGAGAATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
CTCATACGAGCTCTAAATCAGTAAG
Found at i:63207628 original size:40 final size:40
Alignment explanation
Indices: 63207570--63207777 Score: 241
Period size: 40 Copynumber: 5.2 Consensus size: 40
63207560 CGGATGATAA
* *
63207570 CCGGGCTAAGTCCC-GAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAG-CCCTGAAGGCATTTGTGCGAGTTACTATA-T
63207610 CCGGGCTAAGCCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGCCCTGAAGGCATTTGTGCGAGTTACTATAT
* *
63207650 CTGGGCTAAGTCCC-GAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAG-CCCTGAAGGCATTTGTGCGAGTTACTATAT
*
63207690 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGCCCTGAAGGCATTTGTGCGAGTTACTAT-AT
* * *
63207731 -CGGGCTAAG-TCTCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGCCCT-GAAGGCATTTGTGCGAGTTA-CTATAT
63207770 CC-GGCTAA
1 CCGGGCTAA
63207778 ATCCCGAAGG
Statistics
Matches: 150, Mismatches: 10, Indels: 17
0.85 0.06 0.10
Matches are distributed among these distances:
39 17 0.11
40 127 0.85
41 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGCCCTGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63207705 original size:80 final size:80
Alignment explanation
Indices: 63207566--63207787 Score: 310
Period size: 80 Copynumber: 2.8 Consensus size: 80
63207556 TATTCGGATG
* * *
63207566 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATTCCGGGCTAAGCCCTGAAGG
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-TCCGGGCTAAGTCCTGAAGG
63207629 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
63207646 AT-ATCTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCTGAAGGC
1 ATAATC-GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCTGAAGGC
63207710 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * * *
63207726 ATAATCGGGCTAAGTCTCGAAGGCATTTGAGTGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATATCCGGGCTAAGTCCTGAAGG
63207788 AGCAATTTCT
Statistics
Matches: 130, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
79 19 0.15
80 107 0.82
81 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
ATAATCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCTGAAGGCA
TTTGTGCGAGTTACT
Found at i:63215400 original size:40 final size:40
Alignment explanation
Indices: 63215344--63215561 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
63215334 CGGATGATAA
* * *
63215344 CCGGGCTTAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
63215384 TCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63215424 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63215464 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
63215504 CCGGGCTAAATCCTGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
63215544 CC-AGCTAAGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63215562 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 143 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63220452 original size:50 final size:49
Alignment explanation
Indices: 63220332--63220465 Score: 164
Period size: 49 Copynumber: 2.7 Consensus size: 49
63220322 CATGGGTAAA
* **
63220332 GTGCCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCTATCATCTTC
1 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGGCTATCATCAAC
* * * *
63220380 GAGGCTGATGCTATGTCCTAGACATGGTCTTACACTA-GCTCTCATACAAC
1 G-TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGGCTATCAT-CAAC
63220430 TGTGCCGATGCCATGTCCTAGACATGGTCTTACACT
1 -GTGCCGATGCCATGTCCTAGACATGGTCTTACACT
63220466 GACACATCTC
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.01
49 36 0.50
50 34 0.47
51 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGGCTATCATCAAC
Found at i:63220593 original size:47 final size:46
Alignment explanation
Indices: 63220528--63220652 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
63220518 TCCCGAGGCT
* ** *
63220528 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTTA-ATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATAATATA-GAC
* * *
63220574 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATATAGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATAATATAGAC
63220622 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
63220653 TCACATAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 15 0.22
47 28 0.42
48 23 0.34
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATAATATAGAC
Found at i:63220634 original size:140 final size:141
Alignment explanation
Indices: 63220336--63220653 Score: 337
Period size: 140 Copynumber: 2.2 Consensus size: 141
63220326 GGTAAAGTGC
* * * *
63220336 CGATGCCATGTCCCAGACATGGTCTTACAC-AGGC-TATCATCTTCGAGGCTGATGCTATGTCCT
1 CGATG-CATGTCCCAAACAT-GTCTTACACTA-GCTTA-CGTC-CCGAGGCTGATGCTATGTCCC
* *
63220399 AGACATGGTCTTACACTAGCTCTCATACAACTGTGCCGATGCCATGTCCTAGACATGGTCTTACA
61 AGACATGGTCTTACACTAGCACTCATACAACTGT-CCGATGCCATGTCCCAGACATGGTCTTACA
*
63220464 CTGACACATCTCATAGC
125 CTGACACATCTCATAGA
* * *
63220481 CGATGTATGTCCCAAACATGTGTTATACTAGCTTACGTCCCGAGGCTGATGC-ATGTCCCAGACA
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTTACGTCCCGAGGCTGATGCTATGTCCCAGACA
* * *
63220545 T-GTCTTACACTAGCACTCGT-CTTAA-TGT-CGATGCCATGTCCCAGACATGGTCTTATACTGG
66 TGGTCTTACACTAGCACTCATAC--AACTGTCCGATGCCATGTCCCAGACATGGTCTTACACTGA
* *
63220606 CTC-TCATAATATAGA
129 CACATC-T--CATAGA
*
63220621 CGATGCATGTCCCAGACATGTCTTACACTAGCT
1 CGATGCATGTCCCAAACATGTCTTACACTAGCT
63220654 CACATAAATG
Statistics
Matches: 147, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
137 2 0.01
138 33 0.22
139 1 0.01
140 53 0.36
141 14 0.10
142 12 0.08
143 12 0.08
144 15 0.10
145 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (141 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTTACGTCCCGAGGCTGATGCTATGTCCCAGACA
TGGTCTTACACTAGCACTCATACAACTGTCCGATGCCATGTCCCAGACATGGTCTTACACTGACA
CATCTCATAGA
Found at i:63223571 original size:17 final size:16
Alignment explanation
Indices: 63223537--63223574 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
63223527 AATGGGTGAT
63223537 GTTATTCTGAATTAAA
1 GTTATTCTGAATTAAA
63223553 GTTATTCTGTTAA-TAAA
1 GTTATTCTG--AATTAAA
63223570 GTTAT
1 GTTAT
63223575 CCCAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
17 9 0.45
18 2 0.10
ACGTcount: A:0.34, C:0.05, G:0.13, T:0.47
Consensus pattern (16 bp):
GTTATTCTGAATTAAA
Found at i:63234662 original size:49 final size:48
Alignment explanation
Indices: 63234484--63234662 Score: 173
Period size: 49 Copynumber: 3.7 Consensus size: 48
63234474 GATAAGATGC
* * * *
63234484 CGATGCCATATCACAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-TAGT
* * ** * * *
63234532 TGATGCCATGTCCAAGACAGGTCTTACACTAACTTTCATATATCTAGG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCTAGT
* * * *
63234580 CTGATGCCGTGTCCCAGACAGGTCTTACCCTGGCTCTCATCTATCTTTGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-TAGT
63234630 CGATGCCATGTCCCAGACAGGTCTTACACTGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGC
63234663 ACACAAAAAG
Statistics
Matches: 104, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
47 15 0.14
48 17 0.16
49 69 0.66
50 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCTAGT
Found at i:63234737 original size:48 final size:46
Alignment explanation
Indices: 63234675--63234800 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
63234665 ACAAAAAGCT
* * * *
63234675 GACGCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCAAGGCC
1 GACG-CATGTCCCAGGCATGTCTTACACTAGC-TCT-CATCTCAAGGCC
* * * *
63234724 GACGCATGTCCCAGGCATGTCTTACGCTAGCTCTCGTCTCAATGCT
1 GACGCATGTCCCAGGCATGTCTTACACTAGCTCTCATCTCAAGGCC
*
63234770 GATGCATGTCCCAGGCATGTCTTACACTAGC
1 GACGCATGTCCCAGGCATGTCTTACACTAGC
63234801 ACACATATCA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 37 0.55
47 2 0.03
48 24 0.36
49 4 0.06
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (46 bp):
GACGCATGTCCCAGGCATGTCTTACACTAGCTCTCATCTCAAGGCC
Found at i:63236877 original size:29 final size:29
Alignment explanation
Indices: 63236833--63236931 Score: 126
Period size: 29 Copynumber: 3.4 Consensus size: 29
63236823 ACCTCAGATA
*
63236833 ATGAAAAGGGATAGCTTCGTCTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* *
63236862 ACGAAAAGGGATAGCTTCGGATATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * * * *
63236891 GTGAATAGGGATAGCTTTGGCTATTGACT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
63236920 ATGAAAAGGGAT
1 ATGAAAAGGGAT
63236932 GGTGACGACC
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:63238802 original size:47 final size:47
Alignment explanation
Indices: 63238601--63238775 Score: 341
Period size: 47 Copynumber: 3.7 Consensus size: 47
63238591 ACGAAGCTTA
*
63238601 GCCAATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
1 GCCAATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAG
63238648 GCCAATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAG
1 GCCAATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAG
63238695 GCCAATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAG
1 GCCAATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAG
63238742 GCCAATGCATGTCCCAGACACATCTTACACTGGC
1 GCCAATGCATGTCCCAGACACATCTTACACTGGC
63238776 ACTCATCTCT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.23
Consensus pattern (47 bp):
GCCAATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAG
Found at i:63238802 original size:94 final size:90
Alignment explanation
Indices: 63238561--63238783 Score: 338
Period size: 94 Copynumber: 2.4 Consensus size: 90
63238551 ATAAGTGCTG
** * * * *
63238561 ATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAGCCAATGCATGTCCCAGACACGTCT
1 ATGCATGTCCCAGACACATCTTACACTGGCAC-CATCTTAGCCAATGCATGTCCCAGACACATCT
63238626 TACACTGGCTACCATCATTGAGGCCA
65 TACACTGGCTACCATCATTGAGGCCA
63238652 ATGCATGTCCCAGACACATCTTACACTGGCTACCATCATTGAGGCCAATGCATGTCCCAGACACA
1 ATGCATGTCCCAGACACATCTTACACTGGC-ACCATC-TT-A-GCCAATGCATGTCCCAGACACA
63238717 TCTTACACTGGCTACCATCATTGAGGCCA
62 TCTTACACTGGCTACCATCATTGAGGCCA
63238746 ATGCATGTCCCAGACACATCTTACACTGGCACTCATCT
1 ATGCATGTCCCAGACACATCTTACACTGGCAC-CATCT
63238784 CTATACAGAT
Statistics
Matches: 121, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
91 29 0.24
92 4 0.03
93 4 0.03
94 84 0.69
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (90 bp):
ATGCATGTCCCAGACACATCTTACACTGGCACCATCTTAGCCAATGCATGTCCCAGACACATCTT
ACACTGGCTACCATCATTGAGGCCA
Found at i:63245321 original size:54 final size:56
Alignment explanation
Indices: 63245208--63245325 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 56
63245198 TGTATGCAAC
* * * * *
63245208 ACTGACTT-TAAGGCACAGCTATAACACATGCACGTGTGGCCTACCCGTGGACAAA
1 ACTGACTTATAAGACACAACTATAACACATGCACCTATGGCCTACCCATGGACAAA
* * *
63245263 ACTGACTTAT-AGACACAACTATTACACATGC-CCTATGGCCTTCCCATGGACAAT
1 ACTGACTTATAAGACACAACTATAACACATGCACCTATGGCCTACCCATGGACAAA
63245317 ACTGACTTA
1 ACTGACTTA
63245326 AAAGTTTAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 27 0.50
55 26 0.48
56 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (56 bp):
ACTGACTTATAAGACACAACTATAACACATGCACCTATGGCCTACCCATGGACAAA
Found at i:63246149 original size:49 final size:50
Alignment explanation
Indices: 63246076--63246202 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 50
63246066 TAAGTTGCTA
* * *
63246076 ATGCCATGTCCCAGACATGATCTTACACTGGCTATC-T-TCATCGAG-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTGT-AT-AAGTGCCG
* *
63246125 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTGTATAAGTGCCG
63246175 ATG-CATGTCCCAGACAT-GTCTTACACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
63246203 TCACGAAGCT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
48 11 0.16
49 49 0.70
50 9 0.13
51 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTGTATAAGTGCCG
Found at i:63246745 original size:16 final size:16
Alignment explanation
Indices: 63246720--63246750 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63246710 AATATCAAAG
*
63246720 ATGTATTCATTTAGTA
1 ATGTACTCATTTAGTA
63246736 ATGTACTCATTTAGT
1 ATGTACTCATTTAGT
63246751 CATTAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (16 bp):
ATGTACTCATTTAGTA
Found at i:63249751 original size:42 final size:42
Alignment explanation
Indices: 63249687--63249783 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
63249677 TCGGGACTAT
63249687 GTGTAAGACCATATCTAGGATATAGCATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTAGGATATAGCATCGA-TATGAGATTTC
* * *
63249729 GTGTAAGACCATATCT-GAGATATGGCATCGATATGATATTTT
1 GTGTAAGACCATATCTAG-GATATAGCATCGATATGAGATTTC
63249771 GTGTAAGACCATA
1 GTGTAAGACCATA
63249784 GATGGGCTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
41 1 0.02
42 48 0.96
43 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATAGCATCGATATGAGATTTC
Found at i:63252866 original size:45 final size:45
Alignment explanation
Indices: 63252804--63252924 Score: 158
Period size: 45 Copynumber: 2.7 Consensus size: 45
63252794 TAGGATTCTG
* * *
63252804 ATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGTATCGAT
1 ATATGTGTTTTAGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
63252849 ATATGTGTTTTATTGTAAGACCACGTCTGGGACGTTGGCATCG--
1 ATATGTGTTTTAGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
63252892 ATATGTG-GTTACGAGTAAGACCACGTCTGGGAC
1 ATATGTGTTTTA-GTGTAAGACCACGTCTGGGAC
63252925 ATCGACATCG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 3 0.04
43 26 0.38
45 39 0.57
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (45 bp):
ATATGTGTTTTAGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:63257914 original size:46 final size:49
Alignment explanation
Indices: 63257729--63257996 Score: 245
Period size: 46 Copynumber: 5.6 Consensus size: 49
63257719 GGTATAATGT
* * * ** **
63257729 CGATGCCGTGTCCTAGACATGGTCTTACACT-GACTATTGAAATCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTACATCTCAAGGC
* ** * * * *
63257778 CAACACCATGTCCCAAACATGGTCTTACACTAGCTCTAACATATC-CGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCTCAAG-GC
* *
63257828 CGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTC-AAGGC
*
63257874 CGATG-CATGTCCCACACAT-GTCTTACACTAGCT-TACATCTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCAAGGC
* *
63257920 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCAAGGC
63257966 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
63257997 GGTGCTCATA
Statistics
Matches: 181, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.06
45 15 0.08
46 67 0.37
47 15 0.08
48 11 0.06
49 30 0.17
50 33 0.18
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCAAGGC
Found at i:63257991 original size:94 final size:92
Alignment explanation
Indices: 63257783--63258048 Score: 251
Period size: 94 Copynumber: 2.8 Consensus size: 92
63257773 AAGGCCAACA
* * *
63257783 CCATGTCCCAAACATGGTCTTACACTAGCTCTAACATATC-CGTGTCGATGCCATGTCCCAGACA
1 CCATGTCCCAAACATGGTCTTACACTAGCT-T-ACATCTCAAG-GCCGATG-CATGTCCCAGACA
*
63257847 TGGTCTTACACTGACACATCTCGTAGCCGATG
62 T-GTCTTACACTGACACATCTCATAGCCGATG
*
63257879 -CATGTCCCACACAT-GTCTTACACTAGCTTACATCTCAAGGCCGATGCATGTCCCAGACATGTC
1 CCATGTCCCAAACATGGTCTTACACTAGCTTACATCTCAAGGCCGATGCATGTCCCAGACATGTC
* * *
63257942 TTACACTAGCTCTCATCTCA-ATGTCGATG
66 TTACACT-G-ACACATCTCATA-GCCGATG
* * *
63257971 CCATGTCCCAGACATGGTCTTACACT-G-GTGC-TCAT-AATGTGGCCGATGCATGTCCCAGACA
1 CCATGTCCCAAACATGGTCTTACACTAGCTTACATC-TCAA---GGCCGATGCATGTCCCAGACA
* *
63258032 TATCTTACACTGGCACA
62 TGTCTTACACTGACACA
63258049 CAAATAACCC
Statistics
Matches: 146, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
90 10 0.07
91 20 0.14
92 31 0.21
93 17 0.12
94 55 0.38
95 13 0.09
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (92 bp):
CCATGTCCCAAACATGGTCTTACACTAGCTTACATCTCAAGGCCGATGCATGTCCCAGACATGTC
TTACACTGACACATCTCATAGCCGATG
Found at i:63258038 original size:140 final size:140
Alignment explanation
Indices: 63257784--63258042 Score: 371
Period size: 140 Copynumber: 1.8 Consensus size: 140
63257774 AGGCCAACAC
**
63257784 CATGTCCCAAACATGGTCTTACACTAGCTCTAACATATCCGTGTCGATGCCATGTCCCAGACATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGTCGATGCCATGTCCCAGACATG
* *
63257849 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCACACATGTCTTACACTAGCTTACATCT
65 GTCTTACACTGACACATATCGTAGCCGATGCATGTCCCACACATATCTTACACTAGCTTACATCT
63257914 CAAGGCCGATG
130 CAAGGCCGATG
* *
63257925 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGTCGATGCCATGTCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGTCGATGCCATGTCCCAGACATGG
* * * *
63257988 TCTTACACTGGTGCTCATAAT-GTGGCCGATGCATGTCCCAGACATATCTTACACT
66 TCTTACACT-G-ACACAT-ATCGTAGCCGATGCATGTCCCACACATATCTTACACT
63258043 GGCACACAAA
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
138 39 0.37
139 1 0.01
140 51 0.49
141 14 0.13
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (140 bp):
CATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGTCGATGCCATGTCCCAGACATGG
TCTTACACTGACACATATCGTAGCCGATGCATGTCCCACACATATCTTACACTAGCTTACATCTC
AAGGCCGATG
Found at i:63260532 original size:49 final size:49
Alignment explanation
Indices: 63260423--63260541 Score: 150
Period size: 49 Copynumber: 2.4 Consensus size: 49
63260413 CTTGTAGCGT
* *
63260423 GTCAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAAATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAAA
* * * * * *
63260472 GCCTGTATAAGACCTGTCTGGGACATGGCATTGAC-CTTGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAAATGAAA
63260521 GTCAGTGTAAGACCTGTCTGG
1 GTCAGTGTAAGACCTGTCTGG
63260542 TACACGTTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 57 0.98
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAAA
Found at i:63263149 original size:17 final size:18
Alignment explanation
Indices: 63263123--63263156 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63263113 AGCCCATGCT
*
63263123 TGAATTTTTTA-TTTTGA
1 TGAATATTTTAGTTTTGA
63263140 TGAATATTTTAGTTTTG
1 TGAATATTTTAGTTTTG
63263157 TGATGTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.00, G:0.15, T:0.62
Consensus pattern (18 bp):
TGAATATTTTAGTTTTGA
Found at i:63263787 original size:14 final size:14
Alignment explanation
Indices: 63263768--63263795 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63263758 GCTTTCGTGT
63263768 AAGACCACGTCTGG
1 AAGACCACGTCTGG
63263782 AAGACCACGTCTGG
1 AAGACCACGTCTGG
63263796 GACGTTGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14
Consensus pattern (14 bp):
AAGACCACGTCTGG
Found at i:63263846 original size:45 final size:45
Alignment explanation
Indices: 63263782--63263945 Score: 222
Period size: 45 Copynumber: 3.6 Consensus size: 45
63263772 CCACGTCTGG
* * * *
63263782 AAGACCACGTCTGGGACGTTGGCATCAATATTTGTGTTTTCGTAT
1 AAGACCATGTCTGGGACGTTGGCATCGATATATGTGTTTTCGTGT
* * *
63263827 AAGACCATATTTGGGACGTTGACATCGATATATGTGTTTTCGTGT
1 AAGACCATGTCTGGGACGTTGGCATCGATATATGTGTTTTCGTGT
* * *
63263872 AAGACCATGTCTGGGACGTTGGTATCGATATATGTGGTTACGTGT
1 AAGACCATGTCTGGGACGTTGGCATCGATATATGTGTTTTCGTGT
63263917 AAGACCATGTCTGGGACAG-TGGCATCGAT
1 AAGACCATGTCTGGGAC-GTTGGCATCGAT
63263946 GTGAGATAGC
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
45 103 0.99
46 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (45 bp):
AAGACCATGTCTGGGACGTTGGCATCGATATATGTGTTTTCGTGT
Found at i:63267072 original size:43 final size:42
Alignment explanation
Indices: 63266981--63267099 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 42
63266971 CTTTAATTCG
* * *
63266981 TGTAAGACCACGTCTAGGACGTTGGCATTGTATTTGATTTCA
1 TGTAAGACCACGTCCAGGACGTTGGCATCGTATTTGATTACA
* **
63267023 TATAAGACCTTGTCCAGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCCAGGAC-GTTGGCATCG-TATTTGATTACA
* * ** *
63267066 TGTAAGACGACTTCTGGGACGTTGGCATTGTATT
1 TGTAAGACCACGTCCAGGACGTTGGCATCGTATT
63267100 AGCTTTCTAA
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (42 bp):
TGTAAGACCACGTCCAGGACGTTGGCATCGTATTTGATTACA
Found at i:63272247 original size:68 final size:67
Alignment explanation
Indices: 63272175--63272324 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63272165 CATCATGTGT
* * * *
63272175 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63272237 ATGTAG
62 ATGTAG
** * *
63272243 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63272308 AG
66 AG
63272310 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63272325 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63272280 original size:64 final size:64
Alignment explanation
Indices: 63272199--63272382 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63272189 AGACATTATG
* *
63272199 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63272263 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63272328 AA
63 AA
* * * *
63272330 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63272383 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63275256 original size:26 final size:27
Alignment explanation
Indices: 63275195--63275256 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
63275185 ACACATCGGA
* *
63275195 ATATAATTCGGATACATGGATAACTTGC
1 ATATAAGTCGGACACATGGATAAC-TGC
*
63275223 ACATAAGTCGGACACATGGATAA-TGC
1 ATATAAGTCGGACACATGGATAACTGC
63275249 ATATAAGT
1 ATATAAGT
63275257 GCCATATATG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.33
28 20 0.67
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (27 bp):
ATATAAGTCGGACACATGGATAACTGC
Found at i:63275441 original size:46 final size:46
Alignment explanation
Indices: 63275300--63275442 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
63275290 CCATAAGCGA
* * *
63275300 AACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTC
* *
63275346 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA--C
1 AACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGTC
*
63275392 AACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTC
63275438 AACTC
1 AACTC
63275443 AACGAGTTCG
Statistics
Matches: 78, Mismatches: 8, Indels: 22
0.72 0.07 0.20
Matches are distributed among these distances:
41 2 0.03
42 4 0.05
43 2 0.03
44 2 0.03
45 2 0.03
46 57 0.73
48 2 0.03
49 2 0.03
50 3 0.04
51 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTC
Found at i:63288161 original size:43 final size:41
Alignment explanation
Indices: 63288067--63288166 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 41
63288057 ACCATGTCAA
63288067 GGACGTTGGCATCGTATTTGATTTCAGTAAGACCCTATCTG
1 GGACGTTGGCATCGTATTTGATTTCAGTAAGACCCTATCTG
** *
63288108 GGACAATGGCATCGATATTTG-TTTACACGTAAGACCAC-GTCTG
1 GGACGTTGGCATCG-TATTTGATTT-CA-GTAAGACC-CTATCTG
*
63288151 GGATGTTGGCATCGTA
1 GGACGTTGGCATCGTA
63288167 CGAGCTTTGC
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
41 15 0.31
42 10 0.20
43 23 0.47
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
GGACGTTGGCATCGTATTTGATTTCAGTAAGACCCTATCTG
Found at i:63306383 original size:31 final size:31
Alignment explanation
Indices: 63306340--63306403 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63306330 CCTTTTCATA
63306340 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* ** *
63306371 TTTCATATTTCATATTACTGGGCTGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
63306402 TT
1 TT
63306404 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:63306644 original size:25 final size:24
Alignment explanation
Indices: 63306596--63306716 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
63306586 GCTTTATCAT
*
63306596 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
63306621 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
63306646 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63306670 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63306694 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63306717 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 2, Indels: 9
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.01
24 58 0.64
25 25 0.28
26 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63306808 original size:20 final size:20
Alignment explanation
Indices: 63306769--63306849 Score: 130
Period size: 19 Copynumber: 4.2 Consensus size: 20
63306759 GAACATCTCG
63306769 TGTGCATATCA-ACATATCA
1 TGTGCATATCATACATATCA
*
63306788 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
63306808 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
63306828 TGT-CATATCATACATATCA
1 TGTGCATATCATACATATCA
63306847 TGT
1 TGT
63306850 TTATCAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
19 30 0.53
20 27 0.47
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:63306814 original size:39 final size:39
Alignment explanation
Indices: 63306771--63306847 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
63306761 ACATCTCGTG
*
63306771 TGCATATCA-ACATATCATGTGCATATCATACATGTCATC
1 TGCATATCATACATATCATGT-CATATCATACATATCATC
63306810 TGCATATCATACATATCATGTCATATCATACATATCAT
1 TGCATATCATACATATCATGTCATATCATACATATCAT
63306848 GTTTATCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 25 0.69
40 11 0.31
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (39 bp):
TGCATATCATACATATCATGTCATATCATACATATCATC
Found at i:63306833 original size:5 final size:5
Alignment explanation
Indices: 63306773--63306847 Score: 61
Period size: 5 Copynumber: 15.6 Consensus size: 5
63306763 ATCTCGTGTG
* * *
63306773 CATAT CA-A- CATAT CATGT GCATAT CATA- CATGT CATCT GCATAT CATA-
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT -CATAT CATAT
*
63306821 CATAT CATGT CATAT CATA- CATAT CAT
1 CATAT CATAT CATAT CATAT CATAT CAT
63306848 GTTTATCAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
3 2 0.04
4 13 0.23
5 33 0.59
6 8 0.14
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:63306914 original size:25 final size:25
Alignment explanation
Indices: 63306886--63306933 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63306876 ATATATAAAC
* * *
63306886 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63306911 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63306934 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63314727 original size:25 final size:24
Alignment explanation
Indices: 63314679--63314823 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
63314669 GCTTTATCAT
*
63314679 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
63314704 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
63314729 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63314753 ATAAATGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63314777 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63314801 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63314824 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
23 1 0.01
24 80 0.71
25 25 0.22
26 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63314894 original size:9 final size:9
Alignment explanation
Indices: 63314880--63314956 Score: 66
Period size: 9 Copynumber: 7.9 Consensus size: 9
63314870 ATCTCGTGTG
63314880 CATATCATA
1 CATATCATA
*
63314889 CATATCATGTG
1 CATATCA--TA
63314900 CATATCATA
1 CATATCATA
63314909 CATGTAATC-TA
1 CA--T-ATCATA
63314920 CATATCATA
1 CATATCATA
*
63314929 CATATCATGTG
1 CATATCA--TA
63314940 CATATCATA
1 CATATCATA
63314949 CATATCAT
1 CATATCAT
63314957 GTTTATCAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
8 3 0.05
9 29 0.52
11 21 0.38
12 3 0.05
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:63314899 original size:20 final size:20
Alignment explanation
Indices: 63314876--63314958 Score: 130
Period size: 20 Copynumber: 4.2 Consensus size: 20
63314866 GAACATCTCG
63314876 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
63314896 TGTGCATATCATACATGTAA
1 TGTGCATATCATACATATCA
* *
63314916 TCTACATATCATACATATCA
1 TGTGCATATCATACATATCA
63314936 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
63314956 TGT
1 TGT
63314959 TTATCAAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:63315023 original size:25 final size:25
Alignment explanation
Indices: 63314995--63315042 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63314985 ATATATAAAC
* * *
63314995 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63315020 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63315043 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63317064 original size:27 final size:27
Alignment explanation
Indices: 63317033--63317222 Score: 161
Period size: 27 Copynumber: 7.0 Consensus size: 27
63317023 TCTAAACATA
* *
63317033 TACCACATAGGGGCAAAATAGTCAATT
1 TACCACATAAGGGCAAAATAGTCATTT
** * **
63317060 TACCATGTAAGGG-TATTTCAGTCATTT
1 TACCACATAAGGGCAAAAT-AGTCATTT
* * * * *
63317087 TTCCACATATGGGTAAAACAGTCTTTT
1 TACCACATAAGGGCAAAATAGTCATTT
63317114 TACCACAT-AGGGACAAAATAGTCATTT
1 TACCACATAAGGG-CAAAATAGTCATTT
* *
63317141 TACCTCATAAAGGCAAAATAGTCATTT
1 TACCACATAAGGGCAAAATAGTCATTT
* * *
63317168 TACCTCATAAGGGCAAAACAATCATTT
1 TACCACATAAGGGCAAAATAGTCATTT
* *
63317195 TA-CATCAAAAGGACAAAATAGTCATTT
1 TACCA-CATAAGGGCAAAATAGTCATTT
63317222 T
1 T
63317223 GTCAAATTGA
Statistics
Matches: 127, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
26 6 0.05
27 117 0.92
28 4 0.03
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (27 bp):
TACCACATAAGGGCAAAATAGTCATTT
Found at i:63325227 original size:11 final size:10
Alignment explanation
Indices: 63325207--63325231 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
63325197 AAGGGTGATG
63325207 AAAAAGAAAA
1 AAAAAGAAAA
63325217 AAAAAGAAAA
1 AAAAAGAAAA
63325227 AAAAA
1 AAAAA
63325232 TAATAATGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:63325736 original size:27 final size:27
Alignment explanation
Indices: 63325705--63325882 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63325695 TAAATTGTAC
63325705 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63325732 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63325758 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63325786 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63325814 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63325841 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63325868 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63325883 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63325819 original size:82 final size:81
Alignment explanation
Indices: 63325706--63325861 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63325696 AAATTGTACA
* *
63325706 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63325770 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63325787 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63325852 TGCGAGTTGA
65 TGCGAATTGA
63325862 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63325873 original size:82 final size:81
Alignment explanation
Indices: 63325702--63325882 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63325692 GATTAAATTG
* *
63325702 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63325767 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63325783 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63325847 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63325865 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63325883 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63332943 original size:27 final size:27
Alignment explanation
Indices: 63332912--63333089 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63332902 TAAATTGTAC
63332912 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63332939 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63332965 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63332993 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63333021 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63333048 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63333075 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63333090 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63333026 original size:82 final size:81
Alignment explanation
Indices: 63332913--63333068 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63332903 AAATTGTACA
* *
63332913 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63332977 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63332994 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63333059 TGCGAGTTGA
65 TGCGAATTGA
63333069 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63333080 original size:82 final size:81
Alignment explanation
Indices: 63332909--63333089 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63332899 GATTAAATTG
* *
63332909 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63332974 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63332990 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63333054 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63333072 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63333090 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63337304 original size:54 final size:54
Alignment explanation
Indices: 63337215--63337416 Score: 192
Period size: 54 Copynumber: 3.8 Consensus size: 54
63337205 AACCCAAAAA
* * * * *
63337215 TAGG-TAAAATGACCGTAATGCCTCTAT-AGAGTAAAATGACCGTAATACCCCTA
1 TAGGATAAAATGACCATAATACCCCTATAAG-GTAAAATGACCGTAATGCCCCTG
* * * * * *
63337268 TAAGATAAAATGACCATAGTGCCCCTGTAAGGTAAAATTACCATAATGCCCCTG
1 TAGGATAAAATGACCATAATACCCCTATAAGGTAAAATGACCGTAATGCCCCTG
* * * * *
63337322 TAGGGTAAAATGACCATAATACCCTTATATGGTAAAATAACCGTAATGCCCTTG
1 TAGGATAAAATGACCATAATACCCCTATAAGGTAAAATGACCGTAATGCCCCTG
* * * * *
63337376 TAGGATAAAATGACTATAATATCCTTGTATGGTAAAATGAC
1 TAGGATAAAATGACCATAATACCCCTATAAGGTAAAATGAC
63337417 GATTATGCCC
Statistics
Matches: 123, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 3 0.02
54 118 0.96
55 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (54 bp):
TAGGATAAAATGACCATAATACCCCTATAAGGTAAAATGACCGTAATGCCCCTG
Found at i:63337358 original size:81 final size:80
Alignment explanation
Indices: 63337215--63337430 Score: 225
Period size: 81 Copynumber: 2.7 Consensus size: 80
63337205 AACCCAAAAA
* * * * * * *
63337215 TAGGTAAAATGACCGTAATGCCTCTATAGAGTAAAATGACCGTAATACCCCTATAAGATAAAATG
1 TAGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCATAATACCCTTATAAGATAAAATA
*
63337280 ACCATAGTGCCCCTG
66 ACCATAATGCCCCTG
* * *
63337295 TAAGGTAAAATTACCATAATGCCCCTGTAGGGTAAAATGACCATAATACCCTTATATGGTAAAAT
1 T-AGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCATAATACCCTTATAAGATAAAAT
* *
63337360 AACCGTAATGCCCTTG
65 AACCATAATGCCCCTG
* ** * * * * *
63337376 TAGGATAAAATGACTATAATATCCTTGTATGGTAAAATGACGATTATGCCCTTAT
1 TAGG-TAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCATAATACCCTTAT
63337431 GTTCCGAATG
Statistics
Matches: 112, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 4 0.04
81 108 0.96
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (80 bp):
TAGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCATAATACCCTTATAAGATAAAATA
ACCATAATGCCCCTG
Found at i:63337428 original size:27 final size:27
Alignment explanation
Indices: 63337217--63337428 Score: 169
Period size: 27 Copynumber: 7.9 Consensus size: 27
63337207 CCCAAAAATA
* *
63337217 GGTAAAATGACCGTAATG-CC-TCTAT
1 GGTAAAATGACCATAATGCCCTTGTAT
* * * * *
63337242 AGAGTAAAATGACCGTAATACCCCTATAA
1 -G-GTAAAATGACCATAATGCCCTTGTAT
* * * *
63337271 GATAAAATGACCATAGTGCCCCTGTAA
1 GGTAAAATGACCATAATGCCCTTGTAT
* * *
63337298 GGTAAAATTACCATAATGCCCCTGTAG
1 GGTAAAATGACCATAATGCCCTTGTAT
* *
63337325 GGTAAAATGACCATAATACCCTTATAT
1 GGTAAAATGACCATAATGCCCTTGTAT
* *
63337352 GGTAAAATAACCGTAATGCCCTTGTA-
1 GGTAAAATGACCATAATGCCCTTGTAT
* **
63337378 GGATAAAATGACTATAATATCCTTGTAT
1 GG-TAAAATGACCATAATGCCCTTGTAT
* *
63337406 GGTAAAATGACGATTATGCCCTT
1 GGTAAAATGACCATAATGCCCTT
63337429 ATGTTCCGAA
Statistics
Matches: 151, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.02
27 140 0.93
28 5 0.03
29 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACCATAATGCCCTTGTAT
Found at i:63341514 original size:27 final size:27
Alignment explanation
Indices: 63341483--63341654 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
63341473 CCCCAAAATA
*
63341483 GGTAAAATGA-CTGTAATGCCCCTATAG
1 GGTAAAATGATC-GTAATGCCCCTGTAG
* *
63341510 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGATCGTAATGCCCCTGTAG
*
63341537 AGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGATCGTAATGCCCCTGTAG
* * * *
63341564 GGTAAAATGATCGTAATACCCTTATAA
1 GGTAAAATGATCGTAATGCCCCTGTAG
63341591 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGATCGTAATGCCCCTGTAG
* * *** *
63341618 GATAAAATGATTGTAATATTCCTGTAT
1 GGTAAAATGATCGTAATGCCCCTGTAG
63341645 GGTAAAATGA
1 GGTAAAATGA
63341655 CGATTACGCC
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
27 122 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (27 bp):
GGTAAAATGATCGTAATGCCCCTGTAG
Found at i:63341624 original size:81 final size:81
Alignment explanation
Indices: 63341483--63341655 Score: 224
Period size: 81 Copynumber: 2.1 Consensus size: 81
63341473 CCCCAAAATA
* *
63341483 GGTAAAATGACTGTAATGCCCCTATAGGGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAT
1 GGTAAAATGACTGTAATACCCCTATAAGGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAT
*
63341548 CGTAATGCCCCTGTAG
66 CGTAATACCCCTGTAG
* * *
63341564 GGTAAAATGA-TCGTAATACCCTTATAAGGTAAAATGATCGTAATGCCCCTGTAG-GATAAAATG
1 GGTAAAATGACT-GTAATACCCCTATAAGGTAAAATGACCATAATGCCCCTGTAGAG-TAAAATG
* ** *
63341627 ATTGTAATATTCCTGTAT
64 ATCGTAATACCCCTGTAG
63341645 GGTAAAATGAC
1 GGTAAAATGAC
63341656 GATTACGCCC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.03
81 77 0.97
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (81 bp):
GGTAAAATGACTGTAATACCCCTATAAGGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAT
CGTAATACCCCTGTAG
Found at i:63347042 original size:27 final size:27
Alignment explanation
Indices: 63347008--63347158 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
63346998 TAAATTGTAC
63347008 AGCACTAAGTGTGCGATTTGACTATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63347034 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63347062 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63347090 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
63347117 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
63347144 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63347159 GACTCAATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
26 2 0.02
27 83 0.77
28 23 0.21
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63347095 original size:55 final size:55
Alignment explanation
Indices: 63347007--63347158 Score: 186
Period size: 55 Copynumber: 2.8 Consensus size: 55
63346997 GTAAATTGTA
*
63347007 CAGCACTAAGTGTGCGA-TTTGACTATG-ATGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTA-GCACTAAGTGTGCGAATTGACCACG
* * **
63347061 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * *
63347116 TAGCACTAAGTGTGCGAG-TTGA-TGATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACT-ATGTAGCACTAAGTGTGCG
63347159 GACTCAATAT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 1 0.01
54 37 0.43
55 47 0.55
56 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:63347149 original size:82 final size:82
Alignment explanation
Indices: 63347008--63347158 Score: 205
Period size: 82 Copynumber: 1.8 Consensus size: 82
63346998 TAAATTGTAC
* * *
63347008 AGCACTAAGTGTGCGATTTGACTATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
63347073 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATGT
* * ** * *
63347090 AGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTGTGCGAGTTGATGATATAGCACTGAGT
1 AGCACTAAGTGTGCGATTTGACTACGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
63347154 GTGCG
65 GTGCG
63347159 GACTCAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 1 0.02
82 58 0.98
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (82 bp):
AGCACTAAGTGTGCGATTTGACTACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTTTGACTATGT
Found at i:63355025 original size:27 final size:27
Alignment explanation
Indices: 63354967--63355025 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
63354957 AAATTGTACA
** *
63354967 GCACTAAGTGTGCGATTTGACTATGAT
1 GCACTAAGTGTGCGAAATGACAATGAT
63354994 GCACTAAGTGTGCGAAATGA-AATGAT
1 GCACTAAGTGTGCGAAATGACAATGAT
63355020 GACACT
1 G-CACT
63355026 TGCGGCACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAAATGACAATGAT
Found at i:63355085 original size:27 final size:27
Alignment explanation
Indices: 63355030--63355125 Score: 129
Period size: 27 Copynumber: 3.5 Consensus size: 27
63355020 GACACTTGCG
*
63355030 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGATTATGTA
*
63355058 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGATTATGTA
* * *
63355085 GCACTAAGTGTGCGAGTTGATGATATA
1 GCACTAAGTGTGCGATTTGATTATGTA
*
63355112 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
63355126 GACTCAATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
27 46 0.75
28 15 0.25
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGATTATGTA
Found at i:63362238 original size:40 final size:41
Alignment explanation
Indices: 63362181--63362378 Score: 230
Period size: 40 Copynumber: 5.0 Consensus size: 41
63362171 AGCCCATGTG
* *
63362181 GTCA-CTAGCATAGATGCCTTCGGGACTTAGCCCGGATATA
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
63362221 GTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
63362261 ATC-G-TAGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* * * * *
63362300 G-CAACTCGCACGAATGCCTTC-GGATCTTAG-TCGGTTATA
1 GTCAGCTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATA
* *
63362339 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
63362379 CATTCGAATA
Statistics
Matches: 134, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 45 0.34
40 79 0.59
41 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (41 bp):
GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
Done.