Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 191 of 332
Found at i:63624724 original size:27 final size:26
Alignment explanation
Indices: 63624694--63624758 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
63624684 TATGGGTAAA
*
63624694 TCGGTAGTCTTACCCTACAGGGGTATT
1 TCGGTA-TCTTACCCTACAAGGGTATT
* *
63624721 TCGGTATTTCTACCCTACAATGGTATT
1 TCGGTATCT-TACCCTACAAGGGTATT
63624748 TCGGTAATCTT
1 TCGGT-ATCTT
63624759 GTAAATCGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.06
27 27 0.84
28 3 0.09
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (26 bp):
TCGGTATCTTACCCTACAAGGGTATT
Found at i:63629413 original size:39 final size:39
Alignment explanation
Indices: 63629369--63629489 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
63629359 AATTATGTTA
*
63629369 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
63629408 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
63629447 CCAACACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
63629486 CCAG
1 CCAG
63629490 TGTCTTGCTT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:63636130 original size:37 final size:38
Alignment explanation
Indices: 63636079--63636193 Score: 187
Period size: 37 Copynumber: 3.0 Consensus size: 38
63636069 ATTATGTTAC
*
63636079 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
63636117 -AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
63636154 CCAACACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 -CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
63636193 C
1 C
63636194 CAGTGTCTTG
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
37 36 0.50
38 1 0.01
39 35 0.49
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (38 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:63636178 original size:39 final size:39
Alignment explanation
Indices: 63636086--63636195 Score: 188
Period size: 39 Copynumber: 2.9 Consensus size: 39
63636076 TACCAGCACA
*
63636086 AAGCCTGCGGGACTTTAGCCCGGATACATTT--AGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
63636123 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
*
63636162 AAGCCTGCGGGTCTTTAGCCCGGATACATTTCCA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
63636196 GTGTCTTGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
37 31 0.45
39 38 0.55
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
Found at i:63640734 original size:34 final size:34
Alignment explanation
Indices: 63640691--63640756 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
63640681 GATTGATGAC
63640691 GATATCTCCCACGCGATAATCCTACAATCGATAT
1 GATATCTCCCACGCGATAATCCTACAATCGATAT
*
63640725 GATATCTCCCACGCGATAATCCTACTATCGAT
1 GATATCTCCCACGCGATAATCCTACAATCGAT
63640757 CACTAACACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.27
Consensus pattern (34 bp):
GATATCTCCCACGCGATAATCCTACAATCGATAT
Found at i:63640904 original size:27 final size:27
Alignment explanation
Indices: 63640866--63640934 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
63640856 ATAGTCATTT
63640866 TACCCT-CTAGGGGTAAATCGGTAGTCC
1 TACCCTAC-AGGGGTAAATCGGTAGTCC
* ** * *
63640893 TACTCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTAAATCGGTAGTCC
*
63640920 TACCCTACAAGGGTA
1 TACCCTACAGGGGTA
63640935 TTTTGGTAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
TACCCTACAGGGGTAAATCGGTAGTCC
Found at i:63640935 original size:27 final size:27
Alignment explanation
Indices: 63640883--63640942 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
63640873 TAGGGGTAAA
* *
63640883 TCGGTAGTCCTACTCTACAGGGGTATT
1 TCGGTAGTCCTACCCTACAAGGGTATT
* *
63640910 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGGTAGTCCTACCCTACAAGGGTATT
*
63640937 TTGGTA
1 TCGGTA
63640943 ATTTTGTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (27 bp):
TCGGTAGTCCTACCCTACAAGGGTATT
Found at i:63640957 original size:27 final size:27
Alignment explanation
Indices: 63640927--63641026 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
63640917 TTCTACCCTA
*
63640927 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** *
63640954 CAAGGGTAAAGTGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
63640981 TGGGGGTACTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
63641007 CTAGGGATATTTTGGTAATT
1 CAAGGG-TATTTTGGTAATT
63641027 CTACAACTTA
Statistics
Matches: 55, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:63642421 original size:43 final size:43
Alignment explanation
Indices: 63642331--63642443 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
63642321 TGAGTTTACA
* * *
63642331 TGTAAGACCATGTCTGGGACATTGGCATCGTTAATTAGTTACG
1 TGTAAGACCATGTCTGGGACAATGGCATCGATAATTAGTAACG
* *
63642374 TGTAAGACCCTGTCTGGGACAATGGCATCGAT-ATGT-GATAACT
1 TGTAAGACCATGTCTGGGACAATGGCATCGATAAT-TAG-TAACG
* *
63642417 TGTAAGACCATATCTGGGA-TATGGCAT
1 TGTAAGACCATGTCTGGGACAATGGCAT
63642444 TGTAGAGTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 10 0.17
43 50 0.83
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAATGGCATCGATAATTAGTAACG
Found at i:63650395 original size:27 final size:26
Alignment explanation
Indices: 63650347--63650398 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63650337 GCGAGGCTGC
*
63650347 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63650373 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63650399 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63651088 original size:27 final size:27
Alignment explanation
Indices: 63651058--63651112 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
63651048 TCTGTAGTCC
* *
63651058 TACCCTACAGGGGTATTTCGGTATTTT
1 TACCCTACAAGGGTATTTCGGTAATTT
63651085 TACCCTACAAGGGTATTTCGGTAATTT
1 TACCCTACAAGGGTATTTCGGTAATTT
63651112 T
1 T
63651113 GTAAATCGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTT
Found at i:63651124 original size:27 final size:27
Alignment explanation
Indices: 63651094--63651191 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
63651084 TTACCCTACA
63651094 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTGTAAATCG
*** *
63651121 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTCGGTAATTTTGTAAATCG
* * * *
63651148 GGGGTACCTT-GGTAATTTTATAAA-CC
1 AGGGTA-TTTCGGTAATTTTGTAAATCG
*
63651174 AGGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
63651192 CTACAACTTA
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTGTAAATCG
Found at i:63657589 original size:27 final size:27
Alignment explanation
Indices: 63657559--63657763 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
63657549 ATATTGAGTC
* * * *
63657559 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63657586 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63657613 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63657641 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63657668 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63657695 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63657722 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63657749 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63657764 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63665624 original size:27 final size:27
Alignment explanation
Indices: 63665594--63665798 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
63665584 ATATTGAGTC
* * * *
63665594 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63665621 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63665648 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63665676 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63665703 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63665730 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63665757 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63665784 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63665799 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63672361 original size:49 final size:49
Alignment explanation
Indices: 63672302--63672533 Score: 268
Period size: 49 Copynumber: 4.7 Consensus size: 49
63672292 CTGGTACGCA
*
63672302 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
* ** * *
63672351 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGATACACG
* * * * * *
63672401 TAGTAGCCTGCACTTAGTACTACACACGTGAGCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGATACACG
* * * *
63672452 TAGTAGCCTGCACTTAG-AGTTACACATGCGACTAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTA-CTACACACGCGACCAATTATCTGATACACG
*
63672501 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
63672534 TCACAATAGA
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
49 68 0.45
50 50 0.33
51 33 0.22
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
Found at i:63672522 original size:100 final size:99
Alignment explanation
Indices: 63672302--63672533 Score: 288
Period size: 100 Copynumber: 2.3 Consensus size: 99
63672292 CTGGTACGCA
* * * *
63672302 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGATACACATAGTAGCCTGCACTTA
* * *
63672367 GTACTACACACGTGACCTAACCATCTAATACATG
66 GTACTACACACGCGACCTAACCATCCAATACACG
* * *
63672401 TAGTAGCCTGCACTTAGTACTACACACGTGAGCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGATACACATAGTAGCCTGCACT
* * ** *
63672466 TAG-AGTTACACATGCGA-CTAATTATCCGATACACG
64 TAGTA-CTACACACGCGACCTAACCATCCAATACACG
63672501 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
63672534 TCACAATAGA
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
99 30 0.26
100 48 0.42
101 36 0.32
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGATACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCCAATACACG
Found at i:63681253 original size:44 final size:44
Alignment explanation
Indices: 63681203--63681417 Score: 207
Period size: 44 Copynumber: 4.7 Consensus size: 44
63681193 AGATAAGAGC
*
63681203 CAGTGTAAGACCTGTTTGGGACATGGCATCAGCTTGAGGTGTAT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGAGGTGTAT
* * * *
63681247 CAGTGTAAGACCTGTCTAGGACATGGCTTCGGCTTGAGGTGTGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGAGGTGTAT
** * * *
63681291 CAGTGTAAGACCTGTCTGGGACATGGCATC-GACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAG-C-TTG--AGGTG-TA-T
* * *
63681340 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATGTATGGAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTGA-G-GT-GTA-T
63681389 CAGTGTAAGACCTGTCTGGGACATGGCAT
1 CAGTGTAAGACCTGTCTGGGACATGGCAT
63681418 TGACTTAGAT
Statistics
Matches: 141, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
43 1 0.01
44 68 0.48
45 1 0.01
47 5 0.04
49 63 0.45
50 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (44 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGAGGTGTAT
Found at i:63681351 original size:49 final size:48
Alignment explanation
Indices: 63681155--63681452 Score: 217
Period size: 49 Copynumber: 6.3 Consensus size: 48
63681145 TGTGTGTGCT
* * * * * * *
63681155 AGTGTAAGACTTGTCAGGGACATGACATCGGCACCGATAGATAAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAG-TGAGAGCC
* * * * *
63681204 AGTGTAAGACCTGTTTGGGACATGGCATC-AGCT-TGA-GGTG-TA-TC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTCAGATAGTGAGAGCC
* * * * * * *
63681248 AGTGTAAGACCTGTCTAGGACATGGCTTCGGCT-TG--AG-GTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGCC
*
63681292 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGAT-AGTGAGAGCC
* *
63681341 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTC-GAT-GT-ATGGAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACTCAGATAGTGA--G-AGCC
* *
63681390 AGTGTAAGACCTGTCTGGGACATGGCATTGACTTAGAT-GTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGCC
63681437 AGTGTAAGACCATGTC
1 AGTGTAAGACC-TGTC
63681453 ATCGTACCCT
Statistics
Matches: 200, Mismatches: 33, Indels: 33
0.75 0.12 0.12
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 62 0.31
45 2 0.01
46 2 0.01
47 17 0.09
48 13 0.06
49 98 0.49
50 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGCC
Found at i:63683553 original size:40 final size:40
Alignment explanation
Indices: 63683469--63683691 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
63683459 TTGAATGATG
* * * *
63683469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63683509 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63683549 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTT-CTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63683586 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63683626 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63683667 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63683692 AACGAGAGCT
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
37 14 0.09
38 20 0.12
39 20 0.12
40 99 0.61
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63714717 original size:4 final size:4
Alignment explanation
Indices: 63714708--63714741 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
63714698 TGTAGGTGTA
63714708 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT-T TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
63714742 GTATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:63715463 original size:30 final size:30
Alignment explanation
Indices: 63715424--63715483 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
63715414 ATAAGGTGTG
*
63715424 CACTTCTACCCTATGATAACTTGATATAAA
1 CACTGCTACCCTATGATAACTTGATATAAA
63715454 CACTGCTACCCTATGATAACTTGATATAAA
1 CACTGCTACCCTATGATAACTTGATATAAA
63715484 GCCGAAGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (30 bp):
CACTGCTACCCTATGATAACTTGATATAAA
Found at i:63715568 original size:16 final size:16
Alignment explanation
Indices: 63715526--63715568 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
63715516 GTAGATCGGC
*
63715526 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATACCG
*
63715542 AAAAG-TCGAAATACTG
1 AAAAGCT-GAAATACCG
63715558 AAAAGCTGAAA
1 AAAAGCTGAAA
63715569 GTTTGACTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:63715863 original size:28 final size:28
Alignment explanation
Indices: 63715781--63715870 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 28
63715771 TGAGCATGAC
*
63715781 TATAAATGTGAATTAGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
63715810 TATAAATGTGACTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
63715839 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
63715867 TATA
1 TATA
63715871 CAGGTATGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
28 21 0.38
29 35 0.62
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:63716178 original size:26 final size:27
Alignment explanation
Indices: 63716149--63716199 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
63716139 AACCATAATA
* *
63716149 AAAGG-AAAAATTACCGAAATACCCCT
1 AAAGGTAAAAATAACCAAAATACCCCT
*
63716175 AAAGGTGAAAATAACCAAAATACCC
1 AAAGGTAAAAATAACCAAAATACCC
63716200 TTAGGTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.53, C:0.22, G:0.12, T:0.14
Consensus pattern (27 bp):
AAAGGTAAAAATAACCAAAATACCCCT
Found at i:63719678 original size:28 final size:28
Alignment explanation
Indices: 63719596--63719690 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 28
63719586 TGAGCATGAC
*
63719596 TATAAATGTGAATTGGGCAT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
63719625 TATAAATGTGACTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
*
63719654 TATAAATGTGATTGGGCCTAGTGGGTCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
*
63719682 TATACATGT
1 TATAAATGT
63719691 ATGTGAACTT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 24 0.41
29 35 0.59
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:63722290 original size:64 final size:64
Alignment explanation
Indices: 63722209--63722392 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63722199 AGACATTATG
* *
63722209 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63722273 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63722338 AA
63 AA
* * * *
63722340 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63722393 AGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63726395 original size:46 final size:46
Alignment explanation
Indices: 63726341--63726513 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
63726331 TGGTTGAGCA
* *
63726341 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
63726387 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
63726432 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
63726480 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63726514 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 57 0.55
47 27 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:63726497 original size:93 final size:93
Alignment explanation
Indices: 63726338--63726508 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
63726328 GGATGGTTGA
* * * * *
63726338 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
63726403 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63726431 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
*
63726496 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
63726509 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63745426 original size:31 final size:31
Alignment explanation
Indices: 63745383--63745446 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63745373 CCTTTTCATA
63745383 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
63745414 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
63745445 TT
1 TT
63745447 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:63745708 original size:23 final size:24
Alignment explanation
Indices: 63745632--63745799 Score: 234
Period size: 24 Copynumber: 7.0 Consensus size: 24
63745622 GCTTTACCAT
*
63745632 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
63745657 ATAACTCGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
*
63745682 ATAAATGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63745705 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63745729 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63745753 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63745777 ATAATTGAGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63745800 GCACTTCCTC
Statistics
Matches: 131, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
23 23 0.18
24 80 0.61
25 22 0.17
26 6 0.05
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63745870 original size:9 final size:9
Alignment explanation
Indices: 63745856--63745932 Score: 57
Period size: 9 Copynumber: 7.9 Consensus size: 9
63745846 ATCTCGTGTG
63745856 CATATCATA
1 CATATCATA
*
63745865 CATATCATGTG
1 CATATCA--TA
63745876 CATATCATA
1 CATATCATA
*
63745885 CATGA-CATCTG
1 CAT-ATCA--TA
63745896 CATATCATA
1 CATATCATA
*
63745905 CATATCATGTG
1 CATATCA--TA
63745916 CATATCATA
1 CATATCATA
63745925 CATATCAT
1 CATATCAT
63745933 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
9 30 0.56
10 2 0.04
11 22 0.41
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:63745875 original size:20 final size:20
Alignment explanation
Indices: 63745852--63745934 Score: 141
Period size: 20 Copynumber: 4.2 Consensus size: 20
63745842 GAACATCTCG
63745852 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
63745872 TGTGCATATCATACATGA-CA
1 TGTGCATATCATACAT-ATCA
*
63745892 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
63745912 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
63745932 TGT
1 TGT
63745935 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.02
20 57 0.97
21 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:63745999 original size:25 final size:25
Alignment explanation
Indices: 63745971--63746018 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63745961 ATATATAAAC
* *
63745971 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
63745996 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
63746019 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:63746451 original size:8 final size:8
Alignment explanation
Indices: 63746438--63746465 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
63746428 AAATGCCAGA
63746438 ATTTCGGC
1 ATTTCGGC
63746446 ATTTCGGC
1 ATTTCGGC
63746454 ATTTCGGC
1 ATTTCGGC
63746462 ATTT
1 ATTT
63746466 TATCGCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (8 bp):
ATTTCGGC
Found at i:63753535 original size:31 final size:31
Alignment explanation
Indices: 63753492--63753555 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
63753482 CCTTTTCATA
63753492 TTTCATAATTCATA-ACACTGGGCCGAAGCCT
1 TTTCATAATTCATATAC-CTGGGCCGAAGCCT
* *
63753523 TTTCATATTTCATATTCCTGGGCCGAAGCCT
1 TTTCATAATTCATATACCTGGGCCGAAGCCT
63753554 TT
1 TT
63753556 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATATACCTGGGCCGAAGCCT
Found at i:63753827 original size:23 final size:24
Alignment explanation
Indices: 63753741--63753905 Score: 225
Period size: 23 Copynumber: 7.0 Consensus size: 24
63753731 GCTTTATCAT
*
63753741 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
63753766 ATAACTCGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
63753791 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63753813 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63753837 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63753860 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63753883 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63753906 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 3, Indels: 17
0.87 0.02 0.11
Matches are distributed among these distances:
22 10 0.08
23 58 0.45
24 37 0.29
25 24 0.19
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63753905 original size:47 final size:47
Alignment explanation
Indices: 63753755--63753905 Score: 227
Period size: 47 Copynumber: 3.2 Consensus size: 47
63753745 CTGGAGGCCT
*
63753755 AGCCTCTTTTAATAACTCGGGCA-AAGCCCTTTTTTAATAACTGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCC--TTTTAATAACTGGGCATA
63753804 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATA
*
63753850 AGCCCTTTTAATAACTGGGGCATAAGCCC-TTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCATA
63753897 AGCCCTTTT
1 AGCCCTTTT
63753906 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
46 32 0.33
47 54 0.56
48 7 0.07
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATA
Found at i:63753976 original size:9 final size:9
Alignment explanation
Indices: 63753962--63754038 Score: 73
Period size: 9 Copynumber: 7.9 Consensus size: 9
63753952 ATCTAATGTG
63753962 CATATCATA
1 CATATCATA
*
63753971 CATATCATGTG
1 CATATCA--TA
63753982 CATATCATA
1 CATATCATA
*
63753991 CATGTCATA
1 CATATCATA
63754000 TGCATATCATA
1 --CATATCATA
*
63754011 CATATCATGTG
1 CATATCA--TA
63754022 CATATCATA
1 CATATCATA
63754031 CATATCAT
1 CATATCAT
63754039 GTTTATCAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
9 32 0.57
11 24 0.43
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:63753980 original size:20 final size:20
Alignment explanation
Indices: 63753957--63754040 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
63753947 TGAACATCTA
63753957 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
63753977 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
*
63753997 ATATGCATATCATACATATC
1 ATGTGCATATCATACATATC
63754017 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
63754037 ATGT
1 ATGT
63754041 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:63754105 original size:25 final size:25
Alignment explanation
Indices: 63754077--63754124 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63754067 ATATATAAAC
* * *
63754077 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63754102 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63754125 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63764360 original size:28 final size:28
Alignment explanation
Indices: 63764295--63764445 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
63764285 GAGATTGGCG
* * * *
63764295 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
63764324 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
63764352 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
63764380 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
63764408 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
63764435 CTGAGTGTGCG
1 CTAAGTGTGCG
63764446 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:63767276 original size:18 final size:18
Alignment explanation
Indices: 63767253--63767304 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
63767243 GAACTTGCTT
* *
63767253 ACTGTTCACTATTTCTGC
1 ACTGTTCACTATTACTAC
*
63767271 ACTGTTTACTATTACTAC
1 ACTGTTCACTATTACTAC
* *
63767289 ACTGTTTACTGTTACT
1 ACTGTTCACTATTACT
63767305 GCAAAGGGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.10, T:0.46
Consensus pattern (18 bp):
ACTGTTCACTATTACTAC
Found at i:63773556 original size:14 final size:14
Alignment explanation
Indices: 63773537--63773566 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63773527 ATGATGATAA
63773537 TCTAGATTCAGAGC
1 TCTAGATTCAGAGC
63773551 TCTAGATTCAGAGC
1 TCTAGATTCAGAGC
63773565 TC
1 TC
63773567 AAAAATCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (14 bp):
TCTAGATTCAGAGC
Found at i:63779713 original size:50 final size:49
Alignment explanation
Indices: 63779653--63779821 Score: 185
Period size: 51 Copynumber: 3.3 Consensus size: 49
63779643 CTTCCCATTT
* * *
63779653 CATATCCAACCTTCCTTCGCAAGACCATTTCAAATCATTATATTCCCATAA
1 CATA-CCAACCTTCCTCCGCAA-ACCTTTTCAAATCATTATATTCACATAA
* * * **
63779704 CATTCCAACCATCATCCGCAAAACCTTTTTCAAATCATTATATTCATGTAA
1 CATACCAACCTTCCTCCGC-AAACC-TTTTCAAATCATTATATTCACATAA
* * *
63779755 CATACCAGCCTTCCTCCGCAAAGCCTTTCTCAAATCATTAGATTCTCATAA
1 CATACCAACCTTCCTCCGCAAA-CCTTT-TCAAATCATTATATTCACATAA
63779806 CATACCAACCTTCCTC
1 CATACCAACCTTCCTC
63779822 TGTAAAGTCA
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
50 21 0.22
51 76 0.78
ACGTcount: A:0.32, C:0.33, G:0.05, T:0.31
Consensus pattern (49 bp):
CATACCAACCTTCCTCCGCAAACCTTTTCAAATCATTATATTCACATAA
Found at i:63783162 original size:43 final size:43
Alignment explanation
Indices: 63783108--63783221 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 43
63783098 TCACATATTG
* * * *
63783108 ATGCCATTGTCCCAGACAGGGTCTTACACGAAATC-TTATAACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGAAATCATAAT-ACA
* * * * *
63783151 ATGTCAATGTCCTAGACAAGTTGTTACACGTAATCATAATACA
1 ATGCCAATGTCCCAGACAAGGTCTTACACGAAATCATAATACA
*
63783194 ATGCCAACGTCCCAGACATA-GTCTTACA
1 ATGCCAATGTCCCAGACA-AGGTCTTACA
63783222 TGTAATCACA
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
43 51 0.93
44 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACGAAATCATAATACA
Found at i:63787594 original size:93 final size:93
Alignment explanation
Indices: 63787466--63787636 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63787456 GCCCATAAGT
* * *
63787466 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63787531 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
63787559 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
63787624 CGAGTTCGGATGC
66 CGAGCTCGGATGC
63787637 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:63787633 original size:46 final size:46
Alignment explanation
Indices: 63787458--63787633 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
63787448 TGTAACCCGC
* * *
63787458 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
63787504 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
63787554 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
63787597 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
63787634 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:63792311 original size:22 final size:20
Alignment explanation
Indices: 63792263--63792312 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 20
63792253 TCTTAACTAC
*
63792263 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
63792283 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
63792307 TCAAAT
1 TCAAAT
63792313 TTACATAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 14 0.56
23 7 0.28
24 3 0.12
ACGTcount: A:0.50, C:0.26, G:0.04, T:0.20
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:63792788 original size:18 final size:18
Alignment explanation
Indices: 63792765--63792825 Score: 113
Period size: 18 Copynumber: 3.4 Consensus size: 18
63792755 ACACACACAA
63792765 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
*
63792783 AGTAAGCTTTAAGAGCTT
1 AGTAAGCTTTAAAAGCTT
63792801 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
63792819 AGTAAGC
1 AGTAAGC
63792826 CATATACAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (18 bp):
AGTAAGCTTTAAAAGCTT
Found at i:63793163 original size:43 final size:43
Alignment explanation
Indices: 63793097--63793262 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 43
63793087 AGCTCGTATA
* * * * *
63793097 ATGCC-ATATCTCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACAGGGTCTTACACGTAATCACATATCG
* * * *
63793139 ATGCCACTATCCCAGACAGGGTCTT-CACGAAATCATATAACG
1 ATGCCAATATCCCAGACAGGGTCTTACACGTAATCACATATCG
* * * *
63793181 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATATCCCAGACAGGGTCTTACACGTAATCACATAT-CG
* * *
63793224 ATGCCAATGTTCCAGAC-GTGGTCTTACATGTAATCACAT
1 ATGCCAATATCCCAGACAG-GGTCTTACACGTAATCACAT
63793263 CTCGGTAATC
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 40 0.41
43 58 0.59
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATATCCCAGACAGGGTCTTACACGTAATCACATATCG
Found at i:63795340 original size:46 final size:46
Alignment explanation
Indices: 63795287--63795401 Score: 153
Period size: 46 Copynumber: 2.5 Consensus size: 46
63795277 CGAGGGCTAG
*
63795287 TGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACG-TAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CTAAGAGACGAT-AGCCAA
* * *
63795333 TGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTAAGAGACGATAGCCAA
63795379 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
63795402 GCATTGACAC
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
45 2 0.03
46 44 0.71
47 16 0.26
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTAAGAGACGATAGCCAA
Found at i:63798005 original size:50 final size:50
Alignment explanation
Indices: 63797865--63798131 Score: 245
Period size: 50 Copynumber: 5.4 Consensus size: 50
63797855 TGAGCTAAAT
* * * * *** *
63797865 GACCTTGTATAATCGGCCATACAGGTATGTACAAATGTGATGTTATATT-
1 GACCTTGTATATTTGGCCATATAGGTAAGTATTTATGTGATGATATATTG
* * * * * ** *
63797914 GAACTTGAATGTTTGGCCACATAGGTATGTACGTATATGATG-TATTATTG
1 GACCTTGTATATTTGGCCATATAGGTAAGTATTTATGTGATGATA-TATTG
*
63797964 GATCTTGTAT-TTTCGGCCATATAGGTAAGTATTTATGTGATGATATATTG
1 GACCTTGTATATTT-GGCCATATAGGTAAGTATTTATGTGATGATATATTG
* ** *
63798014 AACCTTGTATA-TTGATCATATAGGTAATTATTTATGTGATGATATATTG
1 GACCTTGTATATTTGGCCATATAGGTAAGTATTTATGTGATGATATATTG
* * * *
63798063 AACCTTGTATATTTGGACATATGGGTAAGTATTTATGTGATGATATATTT
1 GACCTTGTATATTTGGCCATATAGGTAAGTATTTATGTGATGATATATTG
* *
63798113 GATCTTGCATATTTGGCCA
1 GACCTTGTATATTTGGCCA
63798132 AATGAATGAT
Statistics
Matches: 181, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
48 2 0.01
49 83 0.46
50 94 0.52
51 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.41
Consensus pattern (50 bp):
GACCTTGTATATTTGGCCATATAGGTAAGTATTTATGTGATGATATATTG
Found at i:63798039 original size:99 final size:99
Alignment explanation
Indices: 63797899--63798111 Score: 245
Period size: 99 Copynumber: 2.2 Consensus size: 99
63797889 GTATGTACAA
* * *
63797899 ATGTGATGTTATATTGAACTTGAATGTTTGGCCACATAGGT-ATGTACGTATATGATG-TATTAT
1 ATGTGATGATATATTGAACTTGAATGATTGACCACATAGGTAAT-TACGTATATGATGATA-TAT
* * *
63797962 TGGATCTTGTAT-TTTCGGCCATATAGGTAAGTATTT
64 TGAACCTTGTATATTT-GGACATATAGGTAAGTATTT
* * * ** *
63797998 ATGTGATGATATATTGAACCTTGTAT-ATTGATCATATAGGTAATTATTTATGTGATGATATATT
1 ATGTGATGATATATTGAA-CTTGAATGATTGACCACATAGGTAATTACGTATATGATGATATATT
*
63798062 GAACCTTGTATATTTGGACATATGGGTAAGTATTT
65 GAACCTTGTATATTTGGACATATAGGTAAGTATTT
63798097 ATGTGATGATATATT
1 ATGTGATGATATATT
63798112 TGATCTTGCA
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
99 84 0.87
100 13 0.13
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (99 bp):
ATGTGATGATATATTGAACTTGAATGATTGACCACATAGGTAATTACGTATATGATGATATATTG
AACCTTGTATATTTGGACATATAGGTAAGTATTT
Found at i:63798058 original size:24 final size:24
Alignment explanation
Indices: 63797982--63798059 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
63797972 ATTTTCGGCC
*
63797982 ATATAGGTAAGTATTTATGTGATG
1 ATATAGGTAATTATTTATGTGATG
* * * *
63798006 ATATA-TTGAACCTTGTATAT-TGATC
1 ATATAGGT-AA--TTATTTATGTGATG
63798031 ATATAGGTAATTATTTATGTGATG
1 ATATAGGTAATTATTTATGTGATG
63798055 ATATA
1 ATATA
63798060 TTGAACCTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
23 7 0.17
24 16 0.40
25 11 0.28
26 6 0.15
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.44
Consensus pattern (24 bp):
ATATAGGTAATTATTTATGTGATG
Found at i:63798751 original size:17 final size:17
Alignment explanation
Indices: 63798726--63798760 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63798716 TGGTTTGGCA
*
63798726 ATGAGACATATATATAT
1 ATGACACATATATATAT
63798743 ATGACACATATATATAT
1 ATGACACATATATATAT
63798760 A
1 A
63798761 AGTATGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (17 bp):
ATGACACATATATATAT
Found at i:63798753 original size:15 final size:15
Alignment explanation
Indices: 63798730--63798759 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63798720 TTGGCAATGA
*
63798730 GACATATATATATAT
1 GACACATATATATAT
63798745 GACACATATATATAT
1 GACACATATATATAT
63798760 AAGTATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (15 bp):
GACACATATATATAT
Found at i:63800916 original size:40 final size:39
Alignment explanation
Indices: 63800832--63801051 Score: 256
Period size: 40 Copynumber: 5.7 Consensus size: 39
63800822 TTGAATGATG
* * *
63800832 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
63800872 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
63800911 TTCCGGGCTAAG--CCGAAGGCA-TT-TGCGAG-TACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
63800946 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
63800986 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
63801026 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63801052 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 10, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
34 10 0.06
35 6 0.04
36 15 0.09
37 4 0.03
38 15 0.09
39 6 0.04
40 96 0.60
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:63800963 original size:74 final size:79
Alignment explanation
Indices: 63800832--63801051 Score: 256
Period size: 74 Copynumber: 2.8 Consensus size: 79
63800822 TTGAATGATG
* * * * *
63800832 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
63800895 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* *
63800912 TCCGGGCTAAG-CCGAAGGCA-TT-TGCGAG-TACTA-ATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
63800972 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* *
63800986 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
63801051 G
65 G
63801052 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
73 1 0.01
74 45 0.37
75 3 0.02
76 11 0.09
77 5 0.04
78 16 0.13
79 5 0.04
80 35 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:63801032 original size:114 final size:115
Alignment explanation
Indices: 63800832--63801051 Score: 286
Period size: 114 Copynumber: 1.9 Consensus size: 115
63800822 TTGAATGATG
*
63800832 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
63800897 GTGCGAGATACTAATTCCGGGCTAAG-CCGAAGGCATTTGCGAGTACTAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGCGAGTACTAA
* * * * **
63800946 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
63801009 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTG
63801052 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
113 3 0.03
114 68 0.75
115 7 0.08
116 13 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (115 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGCGAGTACTAA
Found at i:63808745 original size:40 final size:39
Alignment explanation
Indices: 63808692--63808872 Score: 153
Period size: 39 Copynumber: 4.6 Consensus size: 39
63808682 ATGATGTCCG
63808692 GGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACC-ATATCC
1 GGCTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCAAT-TCC
* *
63808731 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GG-CTAAGATCCGAAGGCATTTGTGCAAGATACCAATTCC
*
63808771 GGCTAAGATCCGAAGGCATTTGTGC--GATACTAATTCC
1 GGCTAAGATCCGAAGGCATTTGTGCAAGATACCAATTCC
* * * * *
63808808 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 -GGCTAAGATCCGAAGGCATTTGTGCAAGATACCAATTCC
*
63808847 GGGTTAAG-TCCCGAAGGCATTTGTGC
1 -GGCTAAGAT-CCGAAGGCATTTGTGC
63808873 GAGTTACTAT
Statistics
Matches: 126, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
37 28 0.22
38 7 0.06
39 42 0.33
40 38 0.30
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
GGCTAAGATCCGAAGGCATTTGTGCAAGATACCAATTCC
Found at i:63808831 original size:76 final size:79
Alignment explanation
Indices: 63808688--63808909 Score: 244
Period size: 77 Copynumber: 2.8 Consensus size: 79
63808678 TTGAATGATG
* * *
63808688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG-GACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGAG-CTAAG-TCCCGAAGGCA
*
63808750 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* *
63808768 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTACTATA-ACCGAGCTAAGTCCCGAAGGCATT
*
63808828 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* *
63808844 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGAGCTAAGTCCCGAAGGCATTT
63808909 G
65 G
63808910 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 8, Indels: 22
0.80 0.05 0.14
Matches are distributed among these distances:
76 30 0.24
77 36 0.29
78 2 0.02
79 29 0.24
80 26 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGAGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:63808873 original size:40 final size:40
Alignment explanation
Indices: 63808688--63808909 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
63808678 TTGAATGATG
* * * *
63808688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63808728 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63808768 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGA--TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63808805 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63808844 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
63808885 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63808910 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
37 28 0.17
38 7 0.04
39 42 0.26
40 74 0.46
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63808927 original size:80 final size:76
Alignment explanation
Indices: 63808741--63808942 Score: 187
Period size: 76 Copynumber: 2.6 Consensus size: 76
63808731 GGACTAAGAT
** * *
63808741 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGCTAAGAT-CCGAAGGCATTTGTGCGATACTAA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGTTAA-ATCCCGAAGGCATTTGTGCGATACTAA
* *
63808804 TTCCGGGCTAAGC
64 TACCGAGCTAAGC
** * *
63808817 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTGCGA--TACTA
*
63808881 ATAACCGAGCTATGTC
63 AT-ACCGAGCTAAG-C
* *
63808897 CCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
63808943 TACGTGATTT
Statistics
Matches: 106, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
75 1 0.01
76 28 0.26
77 23 0.22
78 2 0.02
79 27 0.25
80 25 0.24
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (76 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGCGATACTAATA
CCGAGCTAAGC
Found at i:63813181 original size:11 final size:11
Alignment explanation
Indices: 63813165--63813196 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
63813155 AGTTTGAGTG
63813165 GTCAGAAAAGT
1 GTCAGAAAAGT
63813176 GTCAGAAAAGT
1 GTCAGAAAAGT
63813187 GTCAGAAAAG
1 GTCAGAAAAG
63813197 CTTTGATCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (11 bp):
GTCAGAAAAGT
Found at i:63816758 original size:50 final size:50
Alignment explanation
Indices: 63816622--63816863 Score: 195
Period size: 50 Copynumber: 4.9 Consensus size: 50
63816612 CTAAATGACC
* * * * * *
63816622 TTGTATAATCGGCTATATAGGTATGTA-CAAATGTGATGTTATATTGAAC-
1 TTGTATATTCGGCCATATAGGTAAGTATC-TATGTGATGATATAATGAACA
* * * * * * * *
63816671 TTGAATGTTTGGCCACATAGGTACGTA-CATATATGATG-TATTAATGGATA
1 TTGTATATTCGGCCATATAGGTAAGTATC-TATGTGATGATA-TAATGAACA
* * * *
63816721 TTGTATTTTCGGCCATGTAGGTAAGTATCTATGTGATGATATATTGAACC
1 TTGTATATTCGGCCATATAGGTAAGTATCTATGTGATGATATAATGAACA
* * * *
63816771 TTGTATATTCGGTCATATAGGTAAGTATTTATGTGATGATATATTGAACC
1 TTGTATATTCGGCCATATAGGTAAGTATCTATGTGATGATATAATGAACA
* * * *
63816821 TTGTATATTTGGACATATGGGTAAGTATTTATGTGATGATATA
1 TTGTATATTCGGCCATATAGGTAAGTATCTATGTGATGATATA
63816864 TTTGATCTTG
Statistics
Matches: 159, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
48 2 0.01
49 34 0.21
50 120 0.75
51 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (50 bp):
TTGTATATTCGGCCATATAGGTAAGTATCTATGTGATGATATAATGAACA
Found at i:63816864 original size:50 final size:50
Alignment explanation
Indices: 63816721--63816882 Score: 220
Period size: 50 Copynumber: 3.2 Consensus size: 50
63816711 TTAATGGATA
* * *
63816721 TTGTAT-TTTCGGCCATGTAGGTAAGTATCTATGTGATGATATATTGAACC
1 TTGTATATTT-GGACATATAGGTAAGTATTTATGTGATGATATATTGAACC
* *
63816771 TTGTATATTCGGTCATATAGGTAAGTATTTATGTGATGATATATTGAACC
1 TTGTATATTTGGACATATAGGTAAGTATTTATGTGATGATATATTGAACC
* *
63816821 TTGTATATTTGGACATATGGGTAAGTATTTATGTGATGATATATTTG-ATC
1 TTGTATATTTGGACATATAGGTAAGTATTTATGTGATGATATA-TTGAACC
*
63816871 TTGCATATTTGG
1 TTGTATATTTGG
63816883 CCAAATGAGT
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
50 96 0.95
51 5 0.05
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (50 bp):
TTGTATATTTGGACATATAGGTAAGTATTTATGTGATGATATATTGAACC
Found at i:63818010 original size:33 final size:33
Alignment explanation
Indices: 63817973--63818038 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
63817963 AAATAGGTGT
*
63817973 ATGTGAAAGGATATATGTTCTTTGATGGTTAGA
1 ATGTGAAAGGATATATGTTCTTTGATAGTTAGA
*
63818006 ATGTGAATGGATATATGTTCTTTGATAGTTAGA
1 ATGTGAAAGGATATATGTTCTTTGATAGTTAGA
63818039 CCATTCAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.03, G:0.26, T:0.41
Consensus pattern (33 bp):
ATGTGAAAGGATATATGTTCTTTGATAGTTAGA
Found at i:63819770 original size:40 final size:40
Alignment explanation
Indices: 63819558--63819763 Score: 319
Period size: 40 Copynumber: 5.2 Consensus size: 40
63819548 AACCTAAGTA
* *
63819558 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
63819597 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
63819637 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63819677 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63819717 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63819757 CCTTCGG
1 CCTTCGG
63819764 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 13 0.08
40 145 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63821156 original size:13 final size:13
Alignment explanation
Indices: 63821138--63821163 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63821128 ATTTTTATTT
63821138 TTAACATAAAATA
1 TTAACATAAAATA
63821151 TTAACATAAAATA
1 TTAACATAAAATA
63821164 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:63821618 original size:21 final size:21
Alignment explanation
Indices: 63821594--63821642 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
63821584 GTGGGGCACA
63821594 GGCGTGTTA-CCTTCCCACACG
1 GGCGTGTTACCCTT-CCACACG
* *
63821615 GGCGTATTACCCTTCCACATG
1 GGCGTGTTACCCTTCCACACG
63821636 GGCGTGT
1 GGCGTGT
63821643 GCCCTATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.27
Consensus pattern (21 bp):
GGCGTGTTACCCTTCCACACG
Found at i:63827374 original size:27 final size:27
Alignment explanation
Indices: 63827316--63827375 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
63827306 TTAGTTTACC
* * *
63827316 AAATTACTAAAATACCCTTGAATTGTA
1 AAATTACCAAAATACCCTCGAATTATA
* *
63827343 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGAATTATA
*
63827370 GAATTA
1 AAATTA
63827376 TCATTTTACA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGAATTATA
Found at i:63827401 original size:27 final size:25
Alignment explanation
Indices: 63827358--63827446 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 25
63827348 ACCAAAGTAC
* *
63827358 CCTCGATTTATAGAATTATCATTTTA
1 CCTCGATTTACAAAATTA-CATTTTA
63827384 CACTCGATTTACAAAATTACTATTTTA
1 C-CTCGATTTACAAAATTAC-ATTTTA
* *
63827411 TCCT-TAGTTTACAAAATTACCGTTTTA
1 -CCTCGA-TTTACAAAATTA-CATTTTA
63827438 CCCTCGATT
1 -CCTCGATT
63827447 GTGAAATTAC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
26 3 0.06
27 45 0.88
28 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (25 bp):
CCTCGATTTACAAAATTACATTTTA
Found at i:63827508 original size:27 final size:27
Alignment explanation
Indices: 63827478--63827576 Score: 71
Period size: 27 Copynumber: 3.7 Consensus size: 27
63827468 TGTAGGATAG
**
63827478 AATTACCAAAATACCAC-TGGTTTG-AGA
1 AATTACCAAAATACC-CTTAATTTGTA-A
* *
63827505 AATTATCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* **
63827532 AATTACCAAAATATCCC-TGATTTACAA
1 AATTACCAAAATA-CCCTTAATTTGTAA
63827559 AATTA-CAGAAATACCCTT
1 AATTACCA-AAATACCCTT
63827577 GACTTTTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
26 6 0.10
27 48 0.83
28 4 0.07
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:63827713 original size:27 final size:27
Alignment explanation
Indices: 63827683--63827734 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
63827673 GACTAAAATA
63827683 CCCCTA-ATAGGTAAAAAGACCGTAAAG
1 CCCCTATA-AGGTAAAAAGACCGTAAAG
**
63827710 CCCCTATAAGGTAAAGTGACCGTAA
1 CCCCTATAAGGTAAAAAGACCGTAA
63827735 TACCCTGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.17
Consensus pattern (27 bp):
CCCCTATAAGGTAAAAAGACCGTAAAG
Found at i:63828605 original size:25 final size:24
Alignment explanation
Indices: 63828567--63828636 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
63828557 AGGAAGTGCA
*
63828567 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
63828591 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
* *
63828616 AGAAAGGACTTTACCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
63828637 ATTAAAAAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:63828646 original size:25 final size:25
Alignment explanation
Indices: 63828592--63828647 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
63828582 CAGTTTACCG
* * *
63828592 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGACTTTACCCCAGTTTATAA
*
63828617 GAAAGGACTTTACCCCAG-TTATTAA
1 AAAAGGACTTTACCCCAGTTTA-TAA
63828642 AAAAGG
1 AAAAGG
63828648 CTAGCCTCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (25 bp):
AAAAGGACTTTACCCCAGTTTATAA
Found at i:63828830 original size:42 final size:42
Alignment explanation
Indices: 63828783--63828874 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
63828773 TAGTCTCCCC
* ** *
63828783 AAATGGGCTTGAATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGAATACATCCATTGACATTACATGTGATATTG
*
63828825 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGAATACATCCATTGACATTACATGTGATATTG
63828867 AAATGGGC
1 AAATGGGC
63828875 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGAATACATCCATTGACATTACATGTGATATTG
Found at i:63828946 original size:31 final size:31
Alignment explanation
Indices: 63828898--63829043 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
63828888 CGTATACAGT
* *
63828898 AAAGTCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63828929 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63828960 AAAGGCTTCGGCCCAGCGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
63828991 AAAGGCTTCGACCCAGTGATATGATTTAAGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63829022 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
63829044 TCAAGACTAA
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.05
31 103 0.95
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:63833972 original size:46 final size:46
Alignment explanation
Indices: 63833916--63834088 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
63833906 TGGTTGAGCA
*
63833916 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
63833962 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
63834009 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
63834055 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63834089 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:63834072 original size:93 final size:93
Alignment explanation
Indices: 63833913--63834083 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63833903 GGATGGTTGA
* *
63833913 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
63833978 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63834006 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
63834071 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63834084 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63834350 original size:19 final size:20
Alignment explanation
Indices: 63834313--63834350 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63834303 ATAAGGTGGT
63834313 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
63834333 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
63834351 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:63845809 original size:16 final size:16
Alignment explanation
Indices: 63845788--63845818 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63845778 CTTTATTCAA
63845788 CAATTATACCTGTCTG
1 CAATTATACCTGTCTG
*
63845804 CAATTATGCCTGTCT
1 CAATTATACCTGTCT
63845819 TTCCTTTTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.39
Consensus pattern (16 bp):
CAATTATACCTGTCTG
Found at i:63861898 original size:49 final size:49
Alignment explanation
Indices: 63861845--63862069 Score: 263
Period size: 49 Copynumber: 4.5 Consensus size: 49
63861835 CTGGTACGCA
63861845 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * ** * *
63861894 TAGTAGCCTGCACTTAGTACTGCACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * * * *
63861944 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
* * *
63861995 CAGTAGCCTGCACTTAGTACTACACATGCGATCAA-TATTCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCCGGTACACG
*
63862044 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
63862070 AGTGACCTCA
Statistics
Matches: 146, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
48 2 0.01
49 62 0.42
50 45 0.31
51 37 0.25
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:63862021 original size:101 final size:98
Alignment explanation
Indices: 63861845--63862076 Score: 279
Period size: 101 Copynumber: 2.3 Consensus size: 98
63861835 CTGGTACGCA
* * **
63861845 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCCGGTACACACAGTAGCCTGCACTTA
* * *
63861910 GTACTGCACATGTGACCTAACCA-T-CTGATACACG
66 GTACTACACATGCGACC-AA-CATTCCAG-TACACG
* * * *
63861944 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCACAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGA-CCAA-TTATCCGGTACACACAGTAGCCTGCACT
* *
63862009 TAGTACTACACATGCGATCAATATTCCAGTACACG
64 TAGTACTACACATGCGACCAACATTCCAGTACACG
*
63862044 TAGTAGCTTGCACTTAGTACTACACAAGTGACC
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACC
63862077 TCACAATAGA
Statistics
Matches: 114, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
99 31 0.27
100 41 0.36
101 42 0.37
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCCGGTACACACAGTAGCCTGCACTTA
GTACTACACATGCGACCAACATTCCAGTACACG
Found at i:63865070 original size:25 final size:26
Alignment explanation
Indices: 63865027--63865075 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
63865017 TTATAATATG
* *
63865027 AAAATGACAATTTTGCCCC-TAGGTA
1 AAAATGACAATTATACCCCATAGGTA
*
63865052 AAAATGACCATTATACCCCATAGG
1 AAAATGACAATTATACCCCATAGG
63865076 GTTTATTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (26 bp):
AAAATGACAATTATACCCCATAGGTA
Found at i:63865130 original size:10 final size:10
Alignment explanation
Indices: 63865115--63865172 Score: 64
Period size: 10 Copynumber: 5.6 Consensus size: 10
63865105 TTGTTATACG
63865115 TGATATGACA
1 TGATATGACA
63865125 TGATATGCACA
1 TGATATG-ACA
**
63865136 TGATATGTTA
1 TGATATGACA
63865146 TGATATGCACA
1 TGATATG-ACA
63865157 TGATATG-CTA
1 TGATATGAC-A
63865167 TGATAT
1 TGATAT
63865173 ACTCATTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 1 0.02
10 22 0.54
11 18 0.44
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:63865140 original size:21 final size:20
Alignment explanation
Indices: 63865115--63865188 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 20
63865105 TTGTTATACG
63865115 TGATATGACATGATATGCACA
1 TGATATG-CATGATATGCACA
*
63865136 TGATATGTTATGATATGCACA
1 TGATATG-CATGATATGCACA
* *
63865157 TGATATGCTATGATATACTCA
1 TGATATGC-ATGATATGCACA
*
63865178 TTATATGCATG
1 TGATATGCATG
63865189 GGTTGGGTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
20 3 0.07
21 43 0.93
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (20 bp):
TGATATGCATGATATGCACA
Found at i:63865152 original size:5 final size:5
Alignment explanation
Indices: 63865115--63865172 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
63865105 TTGTTATACG
* * * * *
63865115 TGATA TGACA TGATA TGCACA TGATA TGTTA TGATA TGCACA TGATA TGCTA
1 TGATA TGATA TGATA TG-ATA TGATA TGATA TGATA TG-ATA TGATA TGATA
63865167 TGATA T
1 TGATA T
63865173 ACTCATTATA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 33 0.80
6 8 0.20
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (5 bp):
TGATA
Found at i:63868474 original size:12 final size:12
Alignment explanation
Indices: 63868441--63868475 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
63868431 ATGGTTATGC
*
63868441 AAAGGGAAAGGA
1 AAAGGGAATGGA
63868453 AAAGGAGAATGGA
1 AAAGG-GAATGGA
63868466 AAAGGGAATG
1 AAAGGGAATG
63868476 ATAGATGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.54, C:0.00, G:0.40, T:0.06
Consensus pattern (12 bp):
AAAGGGAATGGA
Found at i:63872861 original size:29 final size:29
Alignment explanation
Indices: 63872787--63872901 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 29
63872777 TACATACATG
* *
63872787 CATATGGCCTACTAGGCCC-AATCTTATT
1 CATATGGCCCACTAGGCCCAAATCATATT
* ** * **
63872815 CAAATGGCCCGTTTGGCCCAGTTCATATT
1 CATATGGCCCACTAGGCCCAAATCATATT
* * **
63872844 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATGGCCCACTAGGCCCAAATCATATT
* *
63872873 CATATGGCCCATTAGACCCAAATCATATT
1 CATATGGCCCACTAGGCCCAAATCATATT
63872902 ATACTCATGC
Statistics
Matches: 64, Mismatches: 22, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
28 14 0.22
29 50 0.78
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAAATCATATT
Found at i:63878213 original size:44 final size:46
Alignment explanation
Indices: 63878069--63878231 Score: 141
Period size: 43 Copynumber: 3.7 Consensus size: 46
63878059 AGCTAGTACA
** *
63878069 ATGCCAACGTCCCAGACGCGGTCTTACATG-T-AAT--CAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGATAAATCACAAATA-CG
* * * * *
63878112 ATTCC-ACTATCCCAGACAGGGACTTACACG--AAA--GCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGATAAATCACAAATACG
* *
63878154 ATGCCGATGTCCCAGACATGGTCTTACAC-ATAAATCACAAATA-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGATAAATCACAAATACG
63878198 ATGCCAACGTCCCAGACATGGTCTTACACGATAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGATAA
63878232 TACATATCGG
Statistics
Matches: 97, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
42 26 0.27
43 33 0.34
44 28 0.29
45 10 0.10
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (46 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGATAAATCACAAATACG
Found at i:63886260 original size:26 final size:25
Alignment explanation
Indices: 63886215--63886298 Score: 118
Period size: 24 Copynumber: 3.4 Consensus size: 25
63886205 TCATTTTCCT
63886215 CTCTTTTGAGCT-ATGAACAGTAAG
1 CTCTTTTGAGCTGATGAACAGTAAG
*
63886239 CTCTTCTTGAGCTGATGGACAGTAAG
1 CTCTT-TTGAGCTGATGAACAGTAAG
*
63886265 CTCTATTGAGCTGA-GAACAGTAAG
1 CTCTTTTGAGCTGATGAACAGTAAG
*
63886289 CTCTTATGAG
1 CTCTTTTGAG
63886299 TTGACATATA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
24 22 0.42
25 16 0.30
26 15 0.28
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (25 bp):
CTCTTTTGAGCTGATGAACAGTAAG
Found at i:63886289 original size:24 final size:25
Alignment explanation
Indices: 63886215--63886292 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
63886205 TCATTTTCCT
*
63886215 CTCTTTTGAGCT-ATGAACAGTAAG
1 CTCTATTGAGCTGATGAACAGTAAG
* *
63886239 CTCTTCTTGAGCTGATGGACAGTAAG
1 CTC-TATTGAGCTGATGAACAGTAAG
63886265 CTCTATTGAGCTGA-GAACAGTAAG
1 CTCTATTGAGCTGATGAACAGTAAG
63886289 CTCT
1 CTCT
63886293 TATGAGTTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
24 16 0.33
25 18 0.38
26 14 0.29
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CTCTATTGAGCTGATGAACAGTAAG
Found at i:63888295 original size:33 final size:33
Alignment explanation
Indices: 63888224--63888295 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
63888214 ACAATGAATG
* * *
63888224 CAGTAACAGTCTAGGCCATAGCCCTATTCAGTAC
1 CAGT-ACAGTCTAGGCCATAGCCCTATACAGAAA
* **
63888258 CAGTACAGTCTGGGCTTTAGCCCTATACAGAAA
1 CAGTACAGTCTAGGCCATAGCCCTATACAGAAA
63888291 CAGTA
1 CAGTA
63888296 TGGGCGTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (33 bp):
CAGTACAGTCTAGGCCATAGCCCTATACAGAAA
Found at i:63888307 original size:28 final size:28
Alignment explanation
Indices: 63888262--63888315 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
63888252 CAGTACCAGT
* * * *
63888262 ACAGTCTGGGCTTTAGCCCTATACAGAA
1 ACAGTATGGGCGTAAGCCCAATACAGAA
63888290 ACAGTATGGGCGTAAGCCCAATACAG
1 ACAGTATGGGCGTAAGCCCAATACAG
63888316 TATCAGTACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (28 bp):
ACAGTATGGGCGTAAGCCCAATACAGAA
Found at i:63888322 original size:28 final size:27
Alignment explanation
Indices: 63888258--63888323 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
63888248 TATTCAGTAC
* * * *
63888258 CAGTACAGTCTGGGCTTTAGCCCTATA
1 CAGTACAGTATGGGCGTAAGCCCAATA
*
63888285 CAGAAACAGTATGGGCGTAAGCCCAATA
1 CAG-TACAGTATGGGCGTAAGCCCAATA
63888313 CAGTATCAGTA
1 CAGTA-CAGTA
63888324 CAGTGTAATG
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (27 bp):
CAGTACAGTATGGGCGTAAGCCCAATA
Found at i:63888544 original size:27 final size:27
Alignment explanation
Indices: 63888484--63888544 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
63888474 CAGAAACAGC
63888484 GAATGTGGCAAAGCCACCAGTATCAAT
1 GAATGTGGCAAAGCCACCAGTATCAAT
** *
63888511 -AATTGTGGCATCGCCACCAGTATCAGT
1 GAA-TGTGGCAAAGCCACCAGTATCAAT
63888538 GAATGTG
1 GAATGTG
63888545 ACATAGTCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (27 bp):
GAATGTGGCAAAGCCACCAGTATCAAT
Found at i:63888777 original size:27 final size:27
Alignment explanation
Indices: 63888693--63888827 Score: 100
Period size: 27 Copynumber: 5.0 Consensus size: 27
63888683 GCACATAAGC
* *
63888693 GCATTAC-AGTCATTTTACACTACAAGG-
1 GCATTACGA-TCATTTTACCCTA-AGGGA
** *
63888720 GCATTAAAATCATTTTACCGTACAGGG-
1 GCATTACGATCATTTTACCCTA-AGGGA
*
63888747 GCATTACGATCATTTTACCCTATGGGA
1 GCATTACGATCATTTTACCCTAAGGGA
* * *
63888774 GCATTACGATAATTTTACTCTACGGTGA
1 GCATTACGATCATTTTACCCTAAGG-GA
63888802 -CATTACCG-TCATTTTACCCTACAGGG
1 GCATTA-CGATCATTTTACCCTA-AGGG
63888828 GTGTTATGGT
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
26 3 0.03
27 79 0.89
28 7 0.08
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (27 bp):
GCATTACGATCATTTTACCCTAAGGGA
Found at i:63888778 original size:54 final size:54
Alignment explanation
Indices: 63888694--63888822 Score: 122
Period size: 54 Copynumber: 2.4 Consensus size: 54
63888684 CACATAAGCG
* * ** * *
63888694 CATTACAGTCATTTTACACTACAAGG-GCATTAAAATCATTTTAC-CGTACAGG-GG
1 CATTACCGTCATTTTACCCTA-TGGGAGCATTAAAATAATTTTACTC-TAC-GGTGA
**
63888748 CATTA-CGATCATTTTACCCTATGGGAGCATTACGATAATTTTACTCTACGGTGA
1 CATTACCG-TCATTTTACCCTATGGGAGCATTAAAATAATTTTACTCTACGGTGA
63888802 CATTACCGTCATTTTACCCTA
1 CATTACCGTCATTTTACCCTA
63888823 CAGGGGTGTT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
53 5 0.08
54 54 0.87
55 3 0.05
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (54 bp):
CATTACCGTCATTTTACCCTATGGGAGCATTAAAATAATTTTACTCTACGGTGA
Found at i:63893018 original size:27 final size:27
Alignment explanation
Indices: 63892955--63893024 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
63892945 TGCCAGAAAT
* *
63892955 AGTGAATGTGGCAAAGCCACCAGTATC
1 AGTGAATGTGGCATAGCAACCAGTATC
63892982 AGT-AATTGTGGCATAGCAACCAGTATC
1 AGTGAA-TGTGGCATAGCAACCAGTATC
* *
63893009 AGTGACTGTGACATAG
1 AGTGAATGTGGCATAG
63893025 TCACCAATAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 34 0.92
28 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (27 bp):
AGTGAATGTGGCATAGCAACCAGTATC
Found at i:63893030 original size:27 final size:26
Alignment explanation
Indices: 63892972--63893038 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
63892962 GTGGCAAAGC
* *
63892972 CACCAGTATCAGTAATTGTGGCATAG
1 CACCAGTATCAGTAACTGTGACATAG
*
63892998 CAACCAGTATCAGTGACTGTGACATAG
1 C-ACCAGTATCAGTAACTGTGACATAG
*
63893025 TCACCAATA-CAGTA
1 -CACCAGTATCAGTA
63893039 CTTCCTCCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 5 0.15
27 28 0.82
28 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (26 bp):
CACCAGTATCAGTAACTGTGACATAG
Found at i:63893198 original size:27 final size:27
Alignment explanation
Indices: 63893165--63893229 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
63893155 TGACACATAA
63893165 GGGCATTACAGTCATTTTACCCTACT-G
1 GGGCATTACAGTCATTTTACCCTA-TAG
*
63893192 GGGCATTACTA-TCATTTTACCTTATAG
1 GGGCATTAC-AGTCATTTTACCCTATAG
63893219 GGGC-TTACAGT
1 GGGCATTACAGT
63893230 TAGTCCTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
25 1 0.03
26 6 0.18
27 26 0.76
28 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGCATTACAGTCATTTTACCCTATAG
Found at i:63898684 original size:52 final size:52
Alignment explanation
Indices: 63898573--63898684 Score: 136
Period size: 52 Copynumber: 2.2 Consensus size: 52
63898563 GGTTCGTGAT
* *
63898573 ATGCATGTGGCATCTGAGCTCGTTGAGTTGGTTCGAGTTCATAACGAATGCC
1 ATGCATGTGGCATCCGAGCTCATTGAGTTGGTTCGAGTTCATAACGAATGCC
* * * * * *
63898625 ATACATGTGGCATCCGAGGTCATTGGGTTGG-TCTGAGTTCATAATGGATGCG
1 ATGCATGTGGCATCCGAGCTCATTGAGTTGGTTC-GAGTTCATAACGAATGCC
63898677 ATGCATGT
1 ATGCATGT
63898685 AATTTGGTTC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 2 0.04
52 48 0.96
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.31
Consensus pattern (52 bp):
ATGCATGTGGCATCCGAGCTCATTGAGTTGGTTCGAGTTCATAACGAATGCC
Found at i:63909160 original size:52 final size:52
Alignment explanation
Indices: 63909070--63909178 Score: 139
Period size: 52 Copynumber: 2.1 Consensus size: 52
63909060 TCGTGATATG
* * *
63909070 CATGTGGCATCCGAGCTCATTGAGTTGGTCTGAGTTCATAACGGAAGCGATA
1 CATGTGGCATCCGAGCTCATTAAGTTAGTCCGAGTTCATAACGGAAGCGATA
* * * *
63909122 CATGTGGCATCTGAGCT-AGTTAAGTTAGTCCGATTTCATAATGGATGCGATA
1 CATGTGGCATCCGAGCTCA-TTAAGTTAGTCCGAGTTCATAACGGAAGCGATA
63909174 CATGT
1 CATGT
63909179 AATTGGGTTC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
51 1 0.02
52 48 0.98
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (52 bp):
CATGTGGCATCCGAGCTCATTAAGTTAGTCCGAGTTCATAACGGAAGCGATA
Found at i:63917489 original size:34 final size:34
Alignment explanation
Indices: 63917451--63917524 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
63917441 AGTGGCAGTC
*
63917451 CAGTATCAGTGTGGGCCTTAGCCCA-TAGCAGTAA
1 CAGTATCAATGTGGGCCTTAGCCCATTA-CAGTAA
63917485 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
63917519 CAGTAT
1 CAGTAT
63917525 AAGTAATGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
Found at i:63927979 original size:43 final size:43
Alignment explanation
Indices: 63927928--63928057 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 43
63927918 CATAGGATTT
63927928 TCGATATGTG-TTCTCGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGATT-TCGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
63927971 TCGATATGTGATTTCGAGTAAAACC-CTGTTTGGGACAGTGGCA
1 TCGATATGTGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCA
* * * *
63928014 TCGACATGTGATTACATGTACGACCACGTCTGGGACATTGGCA
1 TCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCA
63928057 T
1 T
63928058 TGTACGATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 68 0.94
44 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (43 bp):
TCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:63929045 original size:13 final size:13
Alignment explanation
Indices: 63929027--63929054 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63929017 TAAGATAGCT
63929027 TACTCTGTGTGTG
1 TACTCTGTGTGTG
63929040 TACTCTGTGTGTG
1 TACTCTGTGTGTG
63929053 TA
1 TA
63929055 TTTTTACTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.11, C:0.14, G:0.29, T:0.46
Consensus pattern (13 bp):
TACTCTGTGTGTG
Found at i:63931823 original size:51 final size:51
Alignment explanation
Indices: 63931747--63931885 Score: 149
Period size: 51 Copynumber: 2.7 Consensus size: 51
63931737 GGATGCCCGA
* *
63931747 TGGCCTGCACATGGTACCATC-CTTGT-AGTCAAAGCTACCTTCTT-CACAAAG
1 TGGCCTGCACATAGTACCA-CACTTGTGA-CCAAAGCTACCTT-TTACACAAAG
* * *
63931798 TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATAG
1 TGGCCTGCACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAAAG
* * * *
63931849 TGGCCTGCACTTAGTACCACACATGTGATCGAAGCTA
1 TGGCCTGCACATAGTACCACACTTGTGACCAAAGCTA
63931886 TCAGGTACAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
50 3 0.04
51 71 0.95
52 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (51 bp):
TGGCCTGCACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAAAG
Found at i:63931886 original size:51 final size:51
Alignment explanation
Indices: 63931776--63932026 Score: 168
Period size: 51 Copynumber: 4.9 Consensus size: 51
63931766 TCCTTGTAGT
* * * * *
63931776 CAAAGCTACCTTCTT-CACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATCTT-TTACACATAGTGGCCTGCACTTAGTACCACACATGTGAC
*
63931827 CAAAGCTATCTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTGAT
1 CAAAGCTATCTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTGAC
* *** * * ** *
63931878 CGAAGCTATCAGGTACATATAGTAGCCTGCACTTAGTATTACACATGCGAC
1 CAAAGCTATCTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTGAC
* * * * * * * *
63931929 CTAA-CCAT-TTGGTACACGTAGTAGCCTGGACTTAGTACTACACACGTGAC
1 CAAAGCTATCTT-TTACACATAGTGGCCTGCACTTAGTACCACACATGTGAC
* * * * * * *
63931979 CTAAAACCAT-TTTAAACACATAGTAGCTTGCACATAGTACTACACATG
1 C-AAAGCTATCTTT-TACACATAGTGGCCTGCACTTAGTACCACACATG
63932027 GGTTCTCACA
Statistics
Matches: 161, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
50 39 0.24
51 88 0.55
52 34 0.21
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (51 bp):
CAAAGCTATCTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTGAC
Found at i:63932017 original size:52 final size:50
Alignment explanation
Indices: 63931896--63932024 Score: 150
Period size: 52 Copynumber: 2.5 Consensus size: 50
63931886 TCAGGTACAT
* * **
63931896 ATAGTAGCCTGCACTTAGTATTACACATGCGACCTAACCATTTGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATTTGAAACAC
* * * *
63931946 GTAGTAGCCTGGACTTAGTACTACACACGTGACCTAAAACCATTTTAAACAC
1 ATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACCATTTGAAACAC
* *
63931998 ATAGTAGCTTGCACATAGTACTACACA
1 ATAGTAGCCTGCACTTAGTACTACACA
63932025 TGGGTTCTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 30 0.46
52 35 0.54
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
ATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATTTGAAACAC
Found at i:63937636 original size:44 final size:44
Alignment explanation
Indices: 63937581--63937681 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 44
63937571 TTGATATGTG
*
63937581 ATTTCGTGTAAGACCACGTC-TAGGACATTAGCATCG-ATTTGAT
1 ATTTCGTGTAAGACCACGTCTTA-GACATCAGCATCGTATTTGAT
* *
63937624 ATTTACGTGTAAGACCATGTCTTAGACATCAGTATCGTATTTGAT
1 ATTT-CGTGTAAGACCACGTCTTAGACATCAGCATCGTATTTGAT
63937669 -TTT-GTGTAAGACC
1 ATTTCGTGTAAGACC
63937682 CTGTTTAGGA
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
42 10 0.19
43 4 0.08
44 29 0.56
45 9 0.17
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (44 bp):
ATTTCGTGTAAGACCACGTCTTAGACATCAGCATCGTATTTGAT
Found at i:63946661 original size:40 final size:40
Alignment explanation
Indices: 63946575--63946712 Score: 136
Period size: 40 Copynumber: 3.4 Consensus size: 40
63946565 AGACTATGTT
* * * * **
63946575 TGGCACTAAATGTCCGATTTGATATAGCTTTGGCTATAAA
1 TGGCACTAAGTGTGCGAATTGAGATAGCTTTGGCTATATG
*
63946615 TAGCACTAAGTGTGCGAATTG-GAATAGCTTTGGCTATATG
1 TGGCACTAAGTGTGCGAATTGAG-ATAGCTTTGGCTATATG
*
63946655 TGGCACTAAGTGTGCGATATTGAGATA-ATTTCGGTCTAATATG
1 TGGCACTAAGTGTGCGA-ATTGAGATAGCTTT-GG-CT-ATATG
63946698 ATGGCACTAAGTGTG
1 -TGGCACTAAGTGTG
63946713 TGATATTTTA
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
40 51 0.62
41 9 0.11
42 3 0.04
43 5 0.06
44 14 0.17
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAATTGAGATAGCTTTGGCTATATG
Found at i:63947795 original size:11 final size:11
Alignment explanation
Indices: 63947779--63947810 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
63947769 TATGGGTGGA
63947779 AACATGTTGGG
1 AACATGTTGGG
63947790 AACATGTTGGG
1 AACATGTTGGG
63947801 AACATGTTGG
1 AACATGTTGG
63947811 CCTAGTGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.28
Consensus pattern (11 bp):
AACATGTTGGG
Found at i:63949311 original size:27 final size:27
Alignment explanation
Indices: 63949280--63949429 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
63949270 TAAATTGTAC
*
63949280 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
63949307 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
63949333 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * * *
63949361 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
63949388 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
63949415 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63949430 GACTCAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:63949420 original size:81 final size:81
Alignment explanation
Indices: 63949281--63949429 Score: 219
Period size: 81 Copynumber: 1.8 Consensus size: 81
63949271 AAATTGTACA
* *
63949281 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
63949346 GCGAATTGACCATGTG
66 GCGAATTGACCATGTG
* ** * *
63949362 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGTG
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
63949426 TGCG
65 TGCG
63949430 GACTCAATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 58 0.97
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGTG
Found at i:63957436 original size:27 final size:27
Alignment explanation
Indices: 63957403--63957551 Score: 165
Period size: 27 Copynumber: 5.5 Consensus size: 27
63957393 AATTGTACAG
* *
63957403 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTA
* *
63957430 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCGAATTGACTATGTA
* *
63957456 TGCACTAAGTGTGCGAATTGACCATGTG
1 -GCACTAAGTGTGCGAATTGACTATGTA
* * *
63957484 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTA
* * *
63957511 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTA
*
63957538 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
63957552 GACTCAATAT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTA
Found at i:63957542 original size:81 final size:81
Alignment explanation
Indices: 63957402--63957551 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
63957392 AAATTGTACA
* *
63957402 GGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 GGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
63957467 TGCGAATTGACCATGT
66 TGCGAATTGACCATGT
* ** * *
63957483 GGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGT
1 GGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
63957547 GTGCG
65 GTGCG
63957552 GACTCAATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 59 0.97
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
TGCGAATTGACCATGT
Found at i:63962677 original size:46 final size:46
Alignment explanation
Indices: 63962627--63962798 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
63962617 TGAGCATCCA
63962627 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
63962673 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
63962720 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
63962766 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63962799 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:63962779 original size:93 final size:93
Alignment explanation
Indices: 63962620--63962791 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
63962610 GGATGATTGA
* *
63962620 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63962685 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63962713 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63962778 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63962792 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63970324 original size:27 final size:27
Alignment explanation
Indices: 63970283--63970401 Score: 103
Period size: 27 Copynumber: 4.4 Consensus size: 27
63970273 AGATAAGTTG
* * **
63970283 TAGAATTATCGAAATACCCCTACAGGA
1 TAGAATTACCAAAATACCCCTGTAGGA
* *
63970310 TAGAATTACTAAAATACCCTTGTAGGA
1 TAGAATTACCAAAATACCCCTGTAGGA
* * *
63970337 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCAAAATACCCCTGTAGGA
* * * * *
63970364 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCAAAATACCCCTGTAGGA
*
63970391 TAAAATTACCA
1 TAGAATTACCA
63970402 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (27 bp):
TAGAATTACCAAAATACCCCTGTAGGA
Done.