Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 193 of 332
Found at i:64376123 original size:172 final size:172
Alignment explanation
Indices: 64375834--64376177 Score: 442
Period size: 172 Copynumber: 2.0 Consensus size: 172
64375824 AATTAACCCT
*
64375834 CGTGGTAATGAGTTCAACCATTGTTTAGCTTTGTTCCTCAACGAAAAGGGAAACAACCGAAAGCA
1 CGTGGTAATGAGTTCAACCACTGTTTAGCTTTGTTCCTCAACGAAAAGGGAAACAACCGAAAGCA
* * * *
64375899 AATGGGATCATCAGAAACGCCATTGATCTTAAAAGTGTCGCAAAACTCTAAGAAATTCACCAAAT
66 AATGGCATCATCAGAAACACCATTAATCTTAAAAGTATCGCAAAACTCTAAGAAATTCACCAAAT
* * * *
64375964 GAGCATTTGTG-TCCTCGTCCTGCAAACCATCAAACTGAACAA
131 GAGC-GTTGGGATCCTCATCCTACAAACCATCAAACTGAACAA
* *
64376006 CGTGGTAATGAGTTCAACCACTGTTTAGCTTTGTTCCTCAATGAAAAAGGG-AATAACCG-AAGA
1 CGTGGTAATGAGTTCAACCACTGTTTAGCTTTGTTCCTCAACG-AAAAGGGAAACAACCGAAAG-
* * * * ** * ** *
64376069 CGAATGGCATCATCAGAAACACCATTAATTTTAAATGTATCGCATAGTTCTAAGAAGTTGGCTAA
64 CAAATGGCATCATCAGAAACACCATTAATCTTAAAAGTATCGCAAAACTCTAAGAAATTCACCAA
*
64376134 ATGAGCGTTGGGATCCTCATTCTACAAACCATCAAACTGAACAA
129 ATGAGCGTTGGGATCCTCATCCTACAAACCATCAAACTGAACAA
64376178 ATTGTTGTAT
Statistics
Matches: 147, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
171 7 0.05
172 133 0.90
173 7 0.05
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (172 bp):
CGTGGTAATGAGTTCAACCACTGTTTAGCTTTGTTCCTCAACGAAAAGGGAAACAACCGAAAGCA
AATGGCATCATCAGAAACACCATTAATCTTAAAAGTATCGCAAAACTCTAAGAAATTCACCAAAT
GAGCGTTGGGATCCTCATCCTACAAACCATCAAACTGAACAA
Found at i:64383289 original size:46 final size:45
Alignment explanation
Indices: 64383187--64383322 Score: 182
Period size: 46 Copynumber: 3.0 Consensus size: 45
64383177 TATATTTAGT
*
64383187 AATTTTGTTTTAGGGTTCATACGAAATTGGGTTTTTTTAGTTTGC
1 AATTTTGTTTTAGGGTTCATACGAAATTGGGATTTTTTAGTTTGC
* * *
64383232 AATATTATTTTAGGGTTTATACGAAATTGAGGATTTTTTAGTTTGC
1 AATTTTGTTTTAGGGTTCATACGAAATTG-GGATTTTTTAGTTTGC
* * * *
64383278 AATTTTGTTTTAAGGTTCATATGAATTTGGGGAGTTTTTAGTTTG
1 AATTTTGTTTTAGGGTTCATACGAAATT-GGGATTTTTTAGTTTG
64383323 TTTGATTTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
45 26 0.33
46 51 0.65
47 1 0.01
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.50
Consensus pattern (45 bp):
AATTTTGTTTTAGGGTTCATACGAAATTGGGATTTTTTAGTTTGC
Found at i:64386197 original size:16 final size:17
Alignment explanation
Indices: 64386176--64386216 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
64386166 ATATTTTTTT
64386176 AAAAATTATTAGTAT-A
1 AAAAATTATTAGTATGA
64386192 AAAAATTATTAGTATGA
1 AAAAATTATTAGTATGA
*
64386209 TAAAATTA
1 AAAAATTA
64386217 AATACTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (17 bp):
AAAAATTATTAGTATGA
Found at i:64394202 original size:47 final size:44
Alignment explanation
Indices: 64394136--64394258 Score: 140
Period size: 47 Copynumber: 2.7 Consensus size: 44
64394126 TTTGTGTGCT
*
64394136 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGACGAGAGCC
* * *
64394182 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT--GACGAGAGCC
64394230 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
64394259 GCTACGAGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 4 0.06
46 15 0.22
47 27 0.40
48 21 0.31
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTGACGAGAGCC
Found at i:64394482 original size:47 final size:49
Alignment explanation
Indices: 64394367--64394488 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
64394357 GGATATGTGA
* * * * *
64394367 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATAGCATCGGACTCGA-TTCGAT
* * * *
64394417 -AGTCAGTGTAAAACCATGTTTGGGACATAGCATC-GACTTGA-TGGAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATAGCATCGGACTCGATTCGAT
64394463 GAGCCAGTGTAAGACCATGTTTGGGA
1 GAGCCAGTGTAAGACCATGTTTGGGA
64394489 TATGTCATCG
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
46 4 0.07
47 23 0.38
48 5 0.08
49 28 0.47
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATAGCATCGGACTCGATTCGAT
Found at i:64413421 original size:36 final size:36
Alignment explanation
Indices: 64413374--64413445 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
64413364 TGACCATAAC
64413374 ACCACAGGCATTGGCACGTATACATAAATAAATGGG
1 ACCACAGGCATTGGCACGTATACATAAATAAATGGG
64413410 ACCACAGGCATTGGCACGTATACATAAATAAATGGG
1 ACCACAGGCATTGGCACGTATACATAAATAAATGGG
64413446 CTTACAACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (36 bp):
ACCACAGGCATTGGCACGTATACATAAATAAATGGG
Found at i:64421604 original size:49 final size:50
Alignment explanation
Indices: 64421531--64421776 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
64421521 ATCTATTGTG
* *
64421531 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
64421581 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
64421631 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
64421681 AGGTCACGTGTGTAGTACTAACTGCATGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
64421731 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
64421777 GCCTTGTCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 83 0.49
50 47 0.28
51 39 0.23
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:64426759 original size:47 final size:47
Alignment explanation
Indices: 64426708--64427122 Score: 663
Period size: 47 Copynumber: 8.7 Consensus size: 47
64426698 TTAGGATTCT
* * *
64426708 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
64426755 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
64426804 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64426850 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64426897 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64426944 ATGTGATGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 A--TG-TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64426994 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
64427041 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
64427088 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64427123 TCCCGAAGGG
Statistics
Matches: 348, Mismatches: 13, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
46 47 0.14
47 207 0.59
48 2 0.01
49 47 0.14
50 45 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64427019 original size:97 final size:94
Alignment explanation
Indices: 64426708--64427122 Score: 663
Period size: 97 Copynumber: 4.4 Consensus size: 94
64426698 TTAGGATTCT
* * *
64426708 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
64426772 GTGTATATATATGTGATAAGGCCTAATGGCCG
65 GTG--TATATATGTGATAAGGCCTAATGGCCG
64426804 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64426868 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
64426897 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGATGAATGTGA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA--TG-TGATGAATGTGA
64426962 AAGTGTATATATGTGATAAGGCCTAATGGCCG
63 AAGTGTATATATGTGATAAGGCCTAATGGCCG
64426994 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * *
64427059 TGTATATATGTGACAGGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
64427088 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64427123 TCCCGAAGGG
Statistics
Matches: 303, Mismatches: 11, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
93 69 0.23
94 76 0.25
95 27 0.09
96 39 0.13
97 92 0.30
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64427034 original size:144 final size:142
Alignment explanation
Indices: 64426708--64427122 Score: 653
Period size: 144 Copynumber: 2.9 Consensus size: 142
64426698 TTAGGATTCT
* * *
64426708 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
64426772 GTGTATATATATGTGATAAGGCCTAATGGCCGA-TG-TGATGAATGTGAAAGTGTATATATGTGA
65 GTG--TATATATGTGATAAGGCCTAATGGCCGAGTGATGATGAATGTGAAAGTGTATATATGTGA
64426835 TAAGGCCTAATGCCG
128 TAAGGCCTAATGCCG
64426850 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64426915 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGATGAATGTGAAAGTGTATATATGTGATA
66 TGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGATGAATGTGAAAGTGTATATATGTGATA
64426980 AGGCCTAATGGCCG
130 AGGCCTAAT-GCCG
64426994 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * *
64427059 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG--G-ATGTGAAAGTGTATAAATGTGATA
66 TGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGATGAATGTGAAAGTGTATATATGTGATA
64427121 AG
130 AG
64427123 TCCCGAAGGG
Statistics
Matches: 258, Mismatches: 10, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
140 28 0.11
141 26 0.10
142 65 0.25
143 39 0.15
144 100 0.39
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (142 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGAGTGATGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGCCG
Found at i:64427297 original size:37 final size:37
Alignment explanation
Indices: 64427241--64427319 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64427231 CCGAGCTCTA
* * *
64427241 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64427278 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64427315 AAGAC
1 AAGAC
64427320 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64429310 original size:79 final size:80
Alignment explanation
Indices: 64429175--64429709 Score: 389
Period size: 79 Copynumber: 6.7 Consensus size: 80
64429165 CGAATGATGC
* * *
64429175 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTGACTATATCCGGGCTAAG-TCCCGAAGGCATT
*
64429238 TGTGCGAGTTACTA-ATT
64 TGTGCGAGTTACTATA-A
* * * * *
64429255 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
64429319 TGCGAGTTACTATAA
66 TGCGAGTTACTATAA
* * *
64429334 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGCTAAGTCCCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAG-GCATT
** * * * *
64429398 CATGCTAGTGA-TGTAT
64 TGTGCGAGTTACTATAA
* * *
64429414 CCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGCTAAGTCTCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAG-GCATT
** * * * *
64429477 CATGCTAGTGA-TGTAT
64 TGTGCGAGTTACTATAA
* * *
64429493 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGCTAAGT-CCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAG-GCATT
** * * * *
64429556 CATGCTAGTGA-TGTAT
64 TGTGCGAGTTACTATAA
* * * *
64429572 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAG-GCATT
* * * *
64429636 CGTGCTAGTGA-TATAT
64 TGTGCGAGTTACTATAA
* ** ** * * *
64429652 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTG-TTATATCCGTGCTAGGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAG
64429710 AGCAATCATG
Statistics
Matches: 410, Mismatches: 36, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.00
79 214 0.52
80 170 0.41
81 25 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:64429429 original size:119 final size:120
Alignment explanation
Indices: 64429175--64429726 Score: 629
Period size: 119 Copynumber: 4.6 Consensus size: 120
64429165 CGAATGATGC
* * * *
64429175 CCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGTTCCGAAGAGCAT
** * * * * * * *
64429237 TTGTGCGAGTTACT-AATTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAAT
64 TCATGCTAGTGA-TGTA-TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATAT
* * * * *
64429294 CCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGCTAAGTTCCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATATCCGGGCTAAGTTCCGAAGAGCATT
* * *
64429358 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
65 CATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
64429414 CCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCTCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTC-CGAAGAGCATT
* *
64429477 CATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
65 CATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
64429533 CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
*
64429597 ATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
66 ATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* ** * * * * * *
64429652 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGTGCTAGGTCCCGAAGAGCAATC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
*
64429717 ATGCTGGTGA
66 ATGCTAGTGA
64429727 CGTGTATTCG
Statistics
Matches: 384, Mismatches: 40, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
118 2 0.01
119 260 0.68
120 110 0.29
121 12 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
ATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:64429470 original size:159 final size:159
Alignment explanation
Indices: 64429254--64429726 Score: 648
Period size: 159 Copynumber: 3.0 Consensus size: 159
64429244 AGTTACTAAT
* * * * ** * *
64429254 TCCGGGCTAAGCCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG-GCATT
1 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGCTAAGTCTCGAAGAGCATT
* * * *
64429317 TGTGCGAGTTACTATAACCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
65 CGTGCTAGTGA-TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
64429382 AGTCCCGAAGAGCATTCATGCTAGTGATGTA
129 AGTCCCGAAGAGCATTCATGCTAGTGATGTA
64429413 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTC
1 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTC
* *
64429478 ATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG
66 GTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG
64429543 T-CCGAAGAGCATTCATGCTAGTGATGTA
131 TCCCGAAGAGCATTCATGCTAGTGATGTA
*
64429571 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-TCCGAAGAGCAT
1 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCT-CGAAGAGCAT
* *** * * * *
64429635 TCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGTGCTA
64 TCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
* * *
64429700 GGTCCCGAAGAGCAATCATGCTGGTGA
129 AGTCCCGAAGAGCATTCATGCTAGTGA
64429727 CGTGTATTCG
Statistics
Matches: 281, Mismatches: 28, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
158 40 0.14
159 195 0.69
160 46 0.16
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (159 bp):
TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTC
GTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG
TCCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:64429599 original size:40 final size:40
Alignment explanation
Indices: 64429175--64429713 Score: 621
Period size: 40 Copynumber: 13.6 Consensus size: 40
64429165 CGAATGATGC
* **
64429175 CCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTAT
* * * * *
64429215 CCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACT-AATT
1 CCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TGTA-T
* * * **
64429255 CCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTAT
* * * * * *
64429294 CCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTAT
*
64429334 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64429374 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
64429414 CCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
64429453 CCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64429493 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64429533 CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64429572 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
64429612 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* ** * * *
64429652 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
64429692 CCGTGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
64429714 ATCATGCTGG
Statistics
Matches: 451, Mismatches: 39, Indels: 18
0.89 0.08 0.04
Matches are distributed among these distances:
39 110 0.24
40 320 0.71
41 21 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:64432256 original size:47 final size:47
Alignment explanation
Indices: 64432202--64432567 Score: 599
Period size: 47 Copynumber: 7.7 Consensus size: 47
64432192 TTAGGATTCT
* * *
64432202 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
64432249 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
64432298 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64432345 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64432392 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64432439 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
64432486 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
64432533 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64432568 TCCCGAAGGG
Statistics
Matches: 303, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 257 0.85
49 45 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64432742 original size:37 final size:37
Alignment explanation
Indices: 64432686--64432764 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64432676 CCGAGCTCTA
* * *
64432686 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64432723 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64432760 AAGAC
1 AAGAC
64432765 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64436056 original size:40 final size:40
Alignment explanation
Indices: 64435960--64436219 Score: 298
Period size: 40 Copynumber: 6.5 Consensus size: 40
64435950 CTCAAGAAAT
* * * *
64435960 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
64435998 CTTC-GGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
64436037 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
64436077 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
64436117 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
64436157 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
64436198 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
64436220 CATTCGAATA
Statistics
Matches: 188, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
37 6 0.03
38 19 0.10
39 11 0.06
40 122 0.65
41 27 0.14
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:64436096 original size:80 final size:80
Alignment explanation
Indices: 64435960--64436219 Score: 330
Period size: 80 Copynumber: 3.3 Consensus size: 80
64435950 CTCAAGAAAT
* * * * * *
64435960 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTC-GGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
64436022 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* *
64436037 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
64436101 TCACTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
64436117 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
64436182 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
64436198 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
64436220 CATTCGAATA
Statistics
Matches: 159, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
77 12 0.08
78 15 0.09
79 10 0.06
80 89 0.56
81 33 0.21
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:64436866 original size:38 final size:38
Alignment explanation
Indices: 64436815--64436901 Score: 156
Period size: 38 Copynumber: 2.3 Consensus size: 38
64436805 TGCTTACCTA
64436815 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
* *
64436853 TGGCCGAACATACACATTAACTTATGTGCTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
64436891 TGGCCGAACAT
1 TGGCCGAACAT
64436902 GCATGTCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (38 bp):
TGGCCGAACATACACATCAACTTATGTACTCATTCATG
Found at i:64445239 original size:50 final size:50
Alignment explanation
Indices: 64445109--64445348 Score: 257
Period size: 50 Copynumber: 4.8 Consensus size: 50
64445099 GTAACCAAAG
* * *
64445109 CTATTTGGTATACGTAGTAGCTTGCACTTAGTACTACACATGCGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
** * * *
64445158 AAATGTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
* * * * * * *
64445208 CCATCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
* * * ****
64445258 GTTGTCGGGTATGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
*
64445309 CTATCTGGTACACGTAGTAGCCTGCACTGAGTACTACACA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
64445349 CATGGCCTAA
Statistics
Matches: 153, Mismatches: 36, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
49 40 0.26
50 75 0.49
51 38 0.25
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
Found at i:64445986 original size:157 final size:157
Alignment explanation
Indices: 64445700--64446013 Score: 515
Period size: 157 Copynumber: 2.0 Consensus size: 157
64445690 CTTGATCTAT
* * *
64445700 AATAACACATTTGACTTATTAATGGCTCACATTATTCAAATTAGCCCAAAAACATCCTATGCTAA
1 AATAAAACATTTGACTTATTAATGGATCACATTATTAAAATTAGCCCAAAAACATCCTATGCTAA
* * *
64445765 AATTTACGATTTTACCCCTAAAGTTTCACAAAATTATTATCTTACCCCTAGGCTTGGAAAATAAT
66 AATTTACGATTTTACCCCTAAAGTTTCACAAAATTATGATCTTACCACTAGGCTCGGAAAATAAT
64445830 TTTTATTCAATTTCCTTGTATTTTAGG
131 TTTTATTCAATTTCCTTGTATTTTAGG
*
64445857 AATAAAACATTTGATTTATTAATGGATCACATTATTAAAATTAGCCCAAAAACATCCTATGGC-A
1 AATAAAACATTTGACTTATTAATGGATCACATTATTAAAATTAGCCCAAAAACATCCTAT-GCTA
* *
64445921 AAATTTACGATTTTACCCCTAAAGTTTCA-ATAAATTATGATTTTGCCACTAGGCTCGGAAAATA
65 AAATTTACGATTTTACCCCTAAAGTTTCACA-AAATTATGATCTTACCACTAGGCTCGGAAAATA
64445985 ATTTTTATTCAATTTCCTTGTATTTTAGG
129 ATTTTTATTCAATTTCCTTGTATTTTAGG
64446014 CCTAGCCAAA
Statistics
Matches: 146, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
156 1 0.01
157 143 0.98
158 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (157 bp):
AATAAAACATTTGACTTATTAATGGATCACATTATTAAAATTAGCCCAAAAACATCCTATGCTAA
AATTTACGATTTTACCCCTAAAGTTTCACAAAATTATGATCTTACCACTAGGCTCGGAAAATAAT
TTTTATTCAATTTCCTTGTATTTTAGG
Found at i:64452966 original size:50 final size:50
Alignment explanation
Indices: 64452852--64453074 Score: 234
Period size: 50 Copynumber: 4.5 Consensus size: 50
64452842 ATTTGGAACG
* * *
64452852 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACA
** * * *
64452901 CGCAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACA
* * * * * *
64452951 CATAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTGTCGGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATCTGGTACA
* * ** *
64453002 CATAATAGCTTGCACTTAGTACTACACTTGTGACCTAACTGTCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACA
*
64453052 -AGTAGTAGCCTACACTTAGTACT
1 CA-TAGTAGCCTGCACTTAGTACT
64453075 GACCTAAAAC
Statistics
Matches: 141, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 31 0.22
50 72 0.51
51 38 0.27
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACA
Found at i:64462132 original size:46 final size:47
Alignment explanation
Indices: 64462059--64462282 Score: 145
Period size: 46 Copynumber: 4.7 Consensus size: 47
64462049 ACATTATGAG
* *
64462059 AGCCAGTGTTAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTA
1 AGCCAATGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTA
* * ***
64462106 AGCCAATGTAAGA-CATGTCTGGGACATGTATCGACAACGAGATGT-
1 AGCCAATGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTA
* * * * *
64462151 -GTCAGTGTAAGACCATGTCTGGGACATGTCATTGGCAC-GGATATGTGA
1 AGCCAATGTAAGACCATGTCTGGGACATG-CATCGGC-CTTGAGATGT-A
* * * * * **
64462199 GAGCTAGTGTAAGACCATGTCTGGTACATGGCGTCGGCCTCGATTTCG-A
1 -AGCCAATGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGAT-GTA
*
64462248 TAGTCAATAG-AAGACCATGTCTGGGACATGGCATC
1 -AGCCAAT-GTAAGACCATGTCTGGGACAT-GCATC
64462283 AGCAGTATAC
Statistics
Matches: 138, Mismatches: 28, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 37 0.27
47 11 0.08
49 29 0.21
50 34 0.25
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
AGCCAATGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTA
Found at i:64462179 original size:45 final size:46
Alignment explanation
Indices: 64462059--64462228 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 46
64462049 ACATTATGAG
* * * ***
64462059 AGCCAGTGTTAGACCATGTCTGGGACATGCATCGGCCTTGAGATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGTATCGACAACGAGATGT
*
64462105 AAGCCAATGTAAGA-CATGTCTGGGACATGTATCGACAACGAGATGT
1 -AGCCAGTGTAAGACCATGTCTGGGACATGTATCGACAACGAGATGT
* * * *
64462151 -GTCAGTGTAAGACCATGTCTGGGACATGTCATTGGC-ACGGATATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGT-ATCGACAAC-GAGATGT
* *
64462197 GAGAGCTAGTGTAAGACCATGTCTGGTACATG
1 ---AGCCAGTGTAAGACCATGTCTGGGACATG
64462229 GCGTCGGCCT
Statistics
Matches: 101, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
44 10 0.10
45 18 0.18
46 37 0.37
47 11 0.11
50 25 0.25
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGTATCGACAACGAGATGT
Found at i:64468285 original size:40 final size:40
Alignment explanation
Indices: 64468212--64468376 Score: 251
Period size: 40 Copynumber: 4.2 Consensus size: 40
64468202 ACCCAAGTAT
* **
64468212 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
64468251 CTTCGGGACTTAGCCCGAATATAGTAACTGGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
64468291 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
64468331 CTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
64468371 CTTCGG
1 CTTCGG
64468377 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.10
40 103 0.90
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:64476327 original size:40 final size:40
Alignment explanation
Indices: 64476156--64476320 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
64476146 AACCCAAGTA
* **
64476156 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64476195 CCTTCGGGACTTAGCCCGGATATAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64476235 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64476274 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64476314 CCTTCGG
1 CCTTCGG
64476321 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 49 0.43
40 66 0.57
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64476327 original size:79 final size:80
Alignment explanation
Indices: 64476156--64476327 Score: 262
Period size: 79 Copynumber: 2.2 Consensus size: 80
64476146 AACCCAAGTA
*
64476156 CCTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGATCTTAGCCAGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
64476220 TAACTGGCACAAATG
66 TAACTAGCACAAATG
**
64476235 CCTTCGGGA-CTTAGCCCAGATATAGTAACTCGCA-AAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGATCTTAG-CCAGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
64476298 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
64476314 CCTTC-GGATCTTAG
1 CCTTCGGGATCTTAG
64476328 TCCGGTTATC
Statistics
Matches: 85, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
78 3 0.04
79 66 0.78
80 16 0.19
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATCTTAGCCAGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:64480357 original size:32 final size:33
Alignment explanation
Indices: 64480319--64480397 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 33
64480309 AGTGAACAAC
64480319 ACAGTATCAGTACAATCTGGGCCAA-GCCCTAT
1 ACAGTATCAGTACAATCTGGGCCAAGGCCCTAT
* * *
64480351 TCAGTATCCA-TACACTCTGGGCCAAGGCCTTAT
1 ACAGTAT-CAGTACAATCTGGGCCAAGGCCCTAT
*
64480384 ACAGTAGCAGTACA
1 ACAGTATCAGTACA
64480398 GTGCAAGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
32 22 0.56
33 17 0.44
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (33 bp):
ACAGTATCAGTACAATCTGGGCCAAGGCCCTAT
Found at i:64491003 original size:40 final size:40
Alignment explanation
Indices: 64490942--64491125 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
64490932 TATTCGAATG
*
64490942 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
64490982 ATATCCGGACTAAGATTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
64491022 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
64491062 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
64491102 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
64491126 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:64491075 original size:80 final size:80
Alignment explanation
Indices: 64490942--64491125 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
64490932 TATTCGAATG
* * * * *
64490942 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-TCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
64491006 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
64491022 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
64491087 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
64491102 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
64491126 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:64493594 original size:46 final size:44
Alignment explanation
Indices: 64493499--64493662 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 44
64493489 AAAGCCCGTC
* * *
64493499 TAAGACCATGTCTGGGACATGGCATCGGCATTAGGACGA-GAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGC--TACGA-GATGTGCCAGTG
64493547 TAAGACATGTCTGGGACATGCATCGGGCT-CGAGATGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATC-GGCTACGAGATGT--GCCAGTG
** **
64493593 TAAGACATGTCTGGGACATATATCGGCTACGAGATGTTTCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAGTG
*
64493637 TAAGACCATGTCTAGGACATGGCATC
1 TAAGA-CATGTCTGGGACAT-GCATC
64493663 AGCACGTATA
Statistics
Matches: 99, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
43 2 0.02
44 13 0.13
45 18 0.18
46 44 0.44
47 17 0.17
48 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAGTG
Found at i:64493694 original size:48 final size:46
Alignment explanation
Indices: 64493631--64493810 Score: 150
Period size: 48 Copynumber: 3.8 Consensus size: 46
64493621 ACGAGATGTT
64493631 TCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAGAGGTG
1 TCAGTGTAAGACCATGTCT-GGACATGGCATCAGCACGTATAGA-GTG
* * * * * *
64493679 TCTGTGTAAGACCATGTCTTGGACATGGCGTCATCCTCGATTTCGA-TAG
1 TCAGTGTAAGACCATGTC-TGGACATGGCATCA-GCACG-TATAGAGT-G
* * *
64493728 TCAGTGTAAGACCATGTCTGGAACATGGCATC-G-ACTTAATGGATGAG
1 TCAGTGTAAGACCATGTCTGG-ACATGGCATCAGCACGT-ATAGA-GTG
* *
64493775 CCAGTGTAAGACCATGTCTGGGATATGGCATCAGCA
1 TCAGTGTAAGACCATGTCT-GGACATGGCATCAGCA
64493811 TTATACCTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
45 1 0.01
46 4 0.04
47 28 0.27
48 36 0.34
49 32 0.30
50 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (46 bp):
TCAGTGTAAGACCATGTCTGGACATGGCATCAGCACGTATAGAGTG
Found at i:64494796 original size:40 final size:41
Alignment explanation
Indices: 64494752--64494832 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 41
64494742 CAAGGTTCTT
64494752 AGACACGGG-C-TAGAACACGGGC-GTGTCATGGCCATGTGAG
1 AGACACGGGCCATAG-ACACGGGCAGTGTCA-GGCCATGTGAG
*
64494792 AGACACGGGCCATAGACACGGGCATGTGTCAGGCCGTGTGA
1 AGACACGGGCCATAGACACGGGCA-GTGTCAGGCCATGTGA
64494833 AAACCCATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
40 9 0.25
41 9 0.25
42 12 0.33
43 6 0.17
ACGTcount: A:0.25, C:0.23, G:0.37, T:0.15
Consensus pattern (41 bp):
AGACACGGGCCATAGACACGGGCAGTGTCAGGCCATGTGAG
Found at i:64501675 original size:21 final size:20
Alignment explanation
Indices: 64501646--64501690 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
64501636 TTATGATAAA
*
64501646 AATATATATAACATTTTTAT
1 AATAAATATAACATTTTTAT
**
64501666 GAATAAATATATTATTTTTAT
1 -AATAAATATAACATTTTTAT
64501687 AATA
1 AATA
64501691 TATACATAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
AATAAATATAACATTTTTAT
Found at i:64505376 original size:48 final size:47
Alignment explanation
Indices: 64505228--64505393 Score: 163
Period size: 48 Copynumber: 3.5 Consensus size: 47
64505218 CATGAGAGCC
* * * *
64505228 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATA-TAAAGCT
* * * * * * ** *
64505276 AGTGTAAGATATGTTTGGTACATGCATTAGCATTGAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATAAAGCT
*
64505322 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATA-AAGCT
* *
64505370 AGTGTAAGACTTGTCTGAGACATG
1 AGTGTAAGACATGTCTGGGACATG
64505394 GCGTCAGCTT
Statistics
Matches: 93, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
46 34 0.37
47 1 0.01
48 58 0.62
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATAAAGCT
Found at i:64508462 original size:47 final size:47
Alignment explanation
Indices: 64508346--64508658 Score: 258
Period size: 46 Copynumber: 6.7 Consensus size: 47
64508336 CGGATATTTG
* * *
64508346 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTA
* *
64508395 -G--TCCGAACTCGTTGAATTGAGTCCGAGTTCGTGAAATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
64508439 GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTA
* * *
64508488 -G--TCTGAACTTGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
64508532 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
* * *
64508580 TG--TCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
*
64508625 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
64508659 CTTATGGGCG
Statistics
Matches: 211, Mismatches: 32, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
42 5 0.02
43 14 0.07
45 10 0.05
46 81 0.38
47 81 0.38
48 8 0.04
50 10 0.05
51 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64508508 original size:93 final size:93
Alignment explanation
Indices: 64508346--64508665 Score: 541
Period size: 93 Copynumber: 3.4 Consensus size: 93
64508336 CGGATATTTG
* * *
64508346 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
*
64508411 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
64508439 GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
*
64508504 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
64508532 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
64508597 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
64508625 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64508666 GCGGGTTACA
Statistics
Matches: 213, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 213 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64510570 original size:17 final size:17
Alignment explanation
Indices: 64510524--64510575 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
64510514 ATATGGAATG
64510524 AAATTGAGAAAAGAAAAAA
1 AAATTGA-AAAAG-AAAAA
*
64510543 AGAAATG--AAAGAAAAA
1 A-AATTGAAAAAGAAAAA
64510559 AAATTGAAAAAGAAAAA
1 AAATTGAAAAAGAAAAA
64510576 GAGAGTGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.14
16 6 0.21
17 13 0.46
19 1 0.04
20 4 0.14
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (17 bp):
AAATTGAAAAAGAAAAA
Found at i:64510675 original size:18 final size:17
Alignment explanation
Indices: 64510590--64510675 Score: 50
Period size: 18 Copynumber: 4.7 Consensus size: 17
64510580 GTGAGAGTGA
64510590 GAGAAAGCAAAACGAGATT
1 GAGAAAG-AAAA-GAGATT
**
64510609 GAGATTGAAAA-AGAATGT
1 GAGAAAGAAAAGAG-AT-T
* *
64510627 GAGAACGAAAAGAAAATT
1 GAGAAAGAAAAG-AGATT
64510645 GA-AAAGGAGAAAGAGATT
1 GAGAAA-GA-AAAGAGATT
64510663 GGAGAAAGAAAAG
1 -GAGAAAGAAAAG
64510676 GAAGAGTGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 17
0.68 0.09 0.22
Matches are distributed among these distances:
16 2 0.04
17 4 0.08
18 27 0.52
19 15 0.29
20 4 0.08
ACGTcount: A:0.56, C:0.03, G:0.29, T:0.12
Consensus pattern (17 bp):
GAGAAAGAAAAGAGATT
Found at i:64515588 original size:31 final size:31
Alignment explanation
Indices: 64515553--64515616 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
64515543 ACTACTTAGT
*
64515553 ACGAAAGAGGACCAAATTGTAAAATAGGTAA
1 ACGAAAAAGGACCAAATTGTAAAATAGGTAA
*
64515584 ACGAAAAAGGACCAAATTGTAAAATAGTTAA
1 ACGAAAAAGGACCAAATTGTAAAATAGGTAA
64515615 AC
1 AC
64515617 TTACAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.53, C:0.11, G:0.19, T:0.17
Consensus pattern (31 bp):
ACGAAAAAGGACCAAATTGTAAAATAGGTAA
Found at i:64517118 original size:22 final size:23
Alignment explanation
Indices: 64517093--64517137 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
64517083 TAAATAATTC
64517093 AAATA-TTTTTAAAAACATAAAA
1 AAATATTTTTTAAAAACATAAAA
*
64517115 AAATATTTTTTAAAAATATAAAA
1 AAATATTTTTTAAAAACATAAAA
64517138 TATATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATATTTTTTAAAAACATAAAA
Found at i:64521277 original size:2 final size:2
Alignment explanation
Indices: 64521270--64521325 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
64521260 AAACAAATGT
* *
64521270 GA GA GA GA GA GA GA GA GA GA GA GA GA CA GA CA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
64521312 GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA
64521326 ATGACACCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.04, G:0.46, T:0.00
Consensus pattern (2 bp):
GA
Found at i:64523835 original size:60 final size:60
Alignment explanation
Indices: 64523722--64523835 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 60
64523712 AAGTCAGATG
* * *
64523722 GAAACAGAATCAGATTTTCCTGAAGCTGGAGCAACTGCTCATGTGCAATTCAATATGACT
1 GAAACAGAATCAAATTTTCCTGAAGCTGGAGCAACTACTCATGTGCAACTCAATATGACT
*
64523782 GAAACAGAATCAAATTTTTCTGAAGCTGGAGCAACTACTCATGTAG-AACTCAAT
1 GAAACAGAATCAAATTTTCCTGAAGCTGGAGCAACTACTCATGT-GCAACTCAAT
64523836 CCAAGTGACA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 48 0.98
61 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (60 bp):
GAAACAGAATCAAATTTTCCTGAAGCTGGAGCAACTACTCATGTGCAACTCAATATGACT
Found at i:64525629 original size:25 final size:25
Alignment explanation
Indices: 64525601--64525650 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64525591 TCGAAATGTT
64525601 TGTTTCAGTTGCTTTCATATGCACC
1 TGTTTCAGTTGCTTTCATATGCACC
64525626 TGTTTCAGTTGCTTTCATATGCACC
1 TGTTTCAGTTGCTTTCATATGCACC
64525651 CTTTTTCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (25 bp):
TGTTTCAGTTGCTTTCATATGCACC
Found at i:64527544 original size:29 final size:29
Alignment explanation
Indices: 64527508--64527565 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
64527498 TTGGTTTCTT
*
64527508 TATTTTTATAATGTTATTAATTAGTTCAA
1 TATTTTTATAATATTATTAATTAGTTCAA
*
64527537 TATTTTTATAATATTCTTAATTAGTTCAA
1 TATTTTTATAATATTATTAATTAGTTCAA
64527566 ATAGTTAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (29 bp):
TATTTTTATAATATTATTAATTAGTTCAA
Found at i:64527677 original size:29 final size:29
Alignment explanation
Indices: 64527640--64527695 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
64527630 TTTTAAATTT
* *
64527640 AAAAAAAAAGTA-GAGGGATTAAATTCTTG
1 AAAAAAAAAATATGA-GGACTAAATTCTTG
*
64527669 AAAATAAAAATATGAGGACTAAATTCT
1 AAAAAAAAAATATGAGGACTAAATTCT
64527696 AAATGTACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.25
Consensus pattern (29 bp):
AAAAAAAAAATATGAGGACTAAATTCTTG
Found at i:64528598 original size:46 final size:46
Alignment explanation
Indices: 64528538--64528811 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
64528528 TTTGACATGA
* * * * * *
64528538 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
64528584 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
64528630 TGTCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
64528676 TGCCATGGTATCTTTCAACCATCGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
64528722 TGGCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
64528768 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
64528812 AGAGCACACT
Statistics
Matches: 209, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 205 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:64531246 original size:30 final size:30
Alignment explanation
Indices: 64531179--64531246 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
64531169 CACCCTTAAA
* *
64531179 ATATTTGCACTATTAGTCCTTCAAATTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
64531209 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
64531238 AGTATTTAC
1 A-TATTTAC
64531247 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:64532703 original size:22 final size:23
Alignment explanation
Indices: 64532670--64532714 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
64532660 ATTTCATGCA
64532670 CGCATATCACTTTTACAT-CTTT
1 CGCATATCACTTTTACATGCTTT
64532692 CGCATAAT-ACTTTTACATGCTTT
1 CGCAT-ATCACTTTTACATGCTTT
64532715 ATAATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.44
Consensus pattern (23 bp):
CGCATATCACTTTTACATGCTTT
Found at i:64532935 original size:17 final size:17
Alignment explanation
Indices: 64532913--64532947 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
64532903 TTTACTAAAC
64532913 ATTTTCAGATAATTCTG
1 ATTTTCAGATAATTCTG
64532930 ATTTTCAGATAATTCTG
1 ATTTTCAGATAATTCTG
64532947 A
1 A
64532948 GTCATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (17 bp):
ATTTTCAGATAATTCTG
Found at i:64533674 original size:46 final size:46
Alignment explanation
Indices: 64533614--64533887 Score: 415
Period size: 46 Copynumber: 6.0 Consensus size: 46
64533604 TTTGACATGA
* * * * *
64533614 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
64533660 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
64533706 TGCCATGGTGTCTTTCAACCATGTTCTTACTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
64533752 TGCCATGGTATCTTTCAACCATCGTCTTACACATTTCACATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
64533798 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
64533844 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
64533888 AGAGCACACT
Statistics
Matches: 210, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 206 0.98
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:64536914 original size:24 final size:25
Alignment explanation
Indices: 64536878--64536935 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
64536868 TTTAAGAAAA
* * * *
64536878 TTTTAAATTATAAATTTTTATATTT
1 TTTTAAATAATAAAATTTGAAATTT
64536903 TTTTAAA-AATAAAATTTGAAATTT
1 TTTTAAATAATAAAATTTGAAATTT
*
64536927 TTATAAATA
1 TTTTAAATA
64536936 TTTTGAGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
TTTTAAATAATAAAATTTGAAATTT
Found at i:64536946 original size:19 final size:19
Alignment explanation
Indices: 64536925--64536960 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
64536915 AATTTGAAAT
*
64536925 TTTTATAAA-TATTTTGAG
1 TTTTAAAAATTATTTTGAG
64536943 TTTTAAAAATTATTTTGA
1 TTTTAAAAATTATTTTGA
64536961 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAG
Found at i:64539196 original size:12 final size:12
Alignment explanation
Indices: 64539179--64539203 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64539169 CCAAAGTTAC
64539179 TCTTTTTTTTTT
1 TCTTTTTTTTTT
64539191 TCTTTTTTTTTT
1 TCTTTTTTTTTT
64539203 T
1 T
64539204 TAAATACCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:64540176 original size:19 final size:18
Alignment explanation
Indices: 64540137--64540177 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
64540127 ATTTTTTAAT
* *
64540137 ATTTTTAAAAAATTTACA
1 ATTTTTAAAAAATATAAA
64540155 ATTTTTCAAAAAATATAAA
1 ATTTTT-AAAAAATATAAA
64540174 ATTT
1 ATTT
64540178 GAATTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTTTAAAAAATATAAA
Found at i:64544615 original size:20 final size:20
Alignment explanation
Indices: 64544590--64544638 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
64544580 GTCAGTCCTG
* * *
64544590 TGAATAGTGGGATTAATTCA
1 TGAATAGTGGAATCAAATCA
64544610 TGAATAGTGGAATCAAATCA
1 TGAATAGTGGAATCAAATCA
*
64544630 TGAACAGTG
1 TGAATAGTG
64544639 ATAATATGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (20 bp):
TGAATAGTGGAATCAAATCA
Found at i:64549645 original size:95 final size:95
Alignment explanation
Indices: 64549482--64549671 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
64549472 TAAAAAAAAG
64549482 ATTCTCACAACCATTGTTGTGATATCTAACGCCATCAAAGGATGAGTATGTGATGCAAGAGATTC
1 ATTCTCACAACCATTGTTGTGATATCTAACGCCATCAAAGGATGAGTATGTGATGCAAGAGATTC
64549547 ATAAAGGCATTTGTAGAGAACACTTGGGTA
66 ATAAAGGCATTTGTAGAGAACACTTGGGTA
* *
64549577 ATTCTCACAACCATTGTTGTGATATCTGACGCCGTCAAAGGATGAGTATGTGATGCAAGAGATTC
1 ATTCTCACAACCATTGTTGTGATATCTAACGCCATCAAAGGATGAGTATGTGATGCAAGAGATTC
64549642 ATAAAGGCATTTGTAGAGAACACTTGGGTA
66 ATAAAGGCATTTGTAGAGAACACTTGGGTA
64549672 GAATATTGCT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (95 bp):
ATTCTCACAACCATTGTTGTGATATCTAACGCCATCAAAGGATGAGTATGTGATGCAAGAGATTC
ATAAAGGCATTTGTAGAGAACACTTGGGTA
Found at i:64551174 original size:70 final size:70
Alignment explanation
Indices: 64551024--64551250 Score: 172
Period size: 70 Copynumber: 3.2 Consensus size: 70
64551014 ACCATGACAT
* * * *
64551024 TAAAATAGTTAGCGAGAGTTTAAGCTTCCAATTGTAAACTTAAAGCTCATAAGTTCAATACTGCA
1 TAAAATAGTTAGCGAGAGTTGAAGCTCCCAATTGTAAACTTAAAGCTCACAAGTTCAATACCGCA
64551089 TCCTC
66 TCCTC
* * ** * * *
64551094 TAAAATAGTTAGCTAGAGTTGAGGCTCCCAATTGTATTCTTAAGGCTCGCAGGTTCAATACCGCG
1 TAAAATAGTTAGCGAGAGTTGAAGCTCCCAATTGTAAACTTAAAGCTCACAAGTTCAATACCGC-
64551159 A-CCATC
65 ATCC-TC
* ** * * * * * ** * *
64551165 -AAAACAGTTAATGAGAGCTT-AAACTCTCAACTGTGAACTTAATGCTTGCAGGTTTAATACCGC
1 TAAAATAGTTAGCGAGAG-TTGAAGCTCCCAATTGTAAACTTAAAGCTCACAAGTTCAATACCGC
*
64551228 AGCCTC
65 ATCCTC
* *
64551234 TAAAACAATTAGCGAGA
1 TAAAATAGTTAGCGAGA
64551251 ACTCAAGCTA
Statistics
Matches: 124, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
69 3 0.02
70 116 0.94
71 5 0.04
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (70 bp):
TAAAATAGTTAGCGAGAGTTGAAGCTCCCAATTGTAAACTTAAAGCTCACAAGTTCAATACCGCA
TCCTC
Found at i:64553955 original size:25 final size:25
Alignment explanation
Indices: 64553927--64554005 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
64553917 CTAATGGCCG
64553927 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** * **
64553952 ATGTGAT-AAGGCCTAA-TG-GTCG
1 ATGTGATGAATGTGAAAGTGTATAT
64553974 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
64553999 ATGTGAT
1 ATGTGAT
64554006 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 7 0.19
25 15 0.41
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:64554069 original size:49 final size:47
Alignment explanation
Indices: 64553880--64554486 Score: 991
Period size: 47 Copynumber: 12.7 Consensus size: 47
64553870 TTAGGATTCT
* * *
64553880 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
64553927 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64553974 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
64554021 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAAGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
64554070 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAAGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
64554119 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64554166 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
64554215 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
64554264 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64554311 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64554358 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
64554405 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
64554452 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64554487 TCCCGAAGGG
Statistics
Matches: 536, Mismatches: 19, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 344 0.64
49 191 0.36
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64554151 original size:145 final size:143
Alignment explanation
Indices: 64553901--64554486 Score: 1000
Period size: 145 Copynumber: 4.1 Consensus size: 143
64553891 GTGAACATGC
*
64553901 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
64553966 AATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
64554031 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
*
64554044 ATATATGTGATAAGGCCTAAAGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
64554109 CTAAAGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64554174 AATGTGAAAGTGTAT
129 AATGTGAAAGTGTAT
64554189 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
64554254 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64554319 AATGTGAAAGTG--T
129 AATGTGAAAGTGTAT
64554332 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * * * *
64554397 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
64554462 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
64554475 A-A-ATGTGATAAG
1 ATATATGTGATAAG
64554487 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 15, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
141 96 0.23
142 1 0.00
143 93 0.22
145 234 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTAT
Found at i:64554661 original size:37 final size:37
Alignment explanation
Indices: 64554605--64554683 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
64554595 CCGAGCTCTA
* *
64554605 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
64554642 AAGACCCGAT-AGCTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGA-CTACGTGTGGAGATTATGTCCGGGT
64554679 AAGAC
1 AAGAC
64554684 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:64557529 original size:23 final size:23
Alignment explanation
Indices: 64557496--64557539 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
64557486 GGGAATCTCG
64557496 ATTCCCAGTACATGTAAGACCCA
1 ATTCCCAGTACATGTAAGACCCA
*
64557519 ATTCCCCGTACATGTAAGACC
1 ATTCCCAGTACATGTAAGACC
64557540 TGATGCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.23
Consensus pattern (23 bp):
ATTCCCAGTACATGTAAGACCCA
Found at i:64561519 original size:37 final size:37
Alignment explanation
Indices: 64561478--64561549 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
64561468 TATCCTCAAC
64561478 ATTTTCTTTAACA-TATTTAAAATTTT-AATATATTTTA
1 ATTTT-TTTAA-AGTATTTAAAATTTTAAATATATTTTA
*
64561515 ATTTTTTTAAAGTTTTTTAAAATTTTAAATATATT
1 ATTTTTTTAAAG-TATTTAAAATTTTAAATATATT
64561550 AAAAAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
35 1 0.03
36 5 0.16
37 17 0.55
38 8 0.26
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (37 bp):
ATTTTTTTAAAGTATTTAAAATTTTAAATATATTTTA
Found at i:64561590 original size:9 final size:9
Alignment explanation
Indices: 64561576--64561609 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
64561566 ACCTATTAAA
64561576 AAATATATT
1 AAATATATT
64561585 AAATATATT
1 AAATATATT
64561594 AAAT-T-TT
1 AAATATATT
64561601 AAATATATT
1 AAATATATT
64561610 TTAAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 6 0.26
8 2 0.09
9 15 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
AAATATATT
Found at i:64561593 original size:21 final size:21
Alignment explanation
Indices: 64561569--64561636 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
64561559 TCTCTTTACC
64561569 TATTAAAAAATATATTAAATA
1 TATTAAAAAATATATTAAATA
64561590 TATT---AAAT-T-TTAAATA
1 TATTAAAAAATATATTAAATA
*
64561606 TATTTTAAAAAATATATTGAATA
1 TA--TTAAAAAATATATTAAATA
64561629 TATTAAAA
1 TATTAAAA
64561637 TTTTAAAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
16 9 0.23
17 1 0.03
18 6 0.15
21 14 0.36
22 1 0.03
23 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (21 bp):
TATTAAAAAATATATTAAATA
Found at i:64561786 original size:28 final size:28
Alignment explanation
Indices: 64561695--64561780 Score: 163
Period size: 28 Copynumber: 3.0 Consensus size: 28
64561685 AAGTTTTTAA
64561695 AATTTTAAATATATTAAGAAATTTTTTTT
1 AATTTTAAATATATTAAG-AATTTTTTTT
64561724 AATTTTAAATATATTAAGAATTTTTTTT
1 AATTTTAAATATATTAAGAATTTTTTTT
64561752 AATTTTAAATATATTAAGAATTTTTTTT
1 AATTTTAAATATATTAAGAATTTTTTTT
64561780 A
1 A
64561781 TCTTTACCTA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 39 0.68
29 18 0.32
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (28 bp):
AATTTTAAATATATTAAGAATTTTTTTT
Found at i:64566383 original size:40 final size:40
Alignment explanation
Indices: 64566313--64566404 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
64566303 TCTTGATATC
*
64566313 GCACACTTAGTGCCTCATATAGTCGAAGCTA-TTCCAACTT
1 GCACACTTAGTGCCTCATATAGCCGAAGCTATTTCCAAC-T
* * * *
64566353 GCACACTTAGTGCCAT-TTGTAGCCGGAGCTATTTCGAACT
1 GCACACTTAGTGCC-TCATATAGCCGAAGCTATTTCCAACT
64566393 GCACACTTAGTG
1 GCACACTTAGTG
64566405 TCGAACATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (40 bp):
GCACACTTAGTGCCTCATATAGCCGAAGCTATTTCCAACT
Found at i:64567079 original size:15 final size:15
Alignment explanation
Indices: 64567059--64567087 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64567049 TGAGTAGACC
64567059 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
64567074 AGGTACGTTTTATT
1 AGGTACGTTTTATT
64567088 TCAAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:64567825 original size:50 final size:52
Alignment explanation
Indices: 64567751--64567855 Score: 135
Period size: 53 Copynumber: 2.1 Consensus size: 52
64567741 GAAGGGCCAC
* ** *
64567751 TTATAAATAATTTTATC--AAT-ATAATAATATTGATCATTGTTTAAATATA
1 TTATAAATAATTTTATCAAAATAATATTAATATTGATCATTACTTAAATAAA
*
64567800 TTATAACTAATTTTTATCAAAATAATATTAATATTGATCATTACTTAAATAAA
1 TTATAAATAA-TTTTATCAAAATAATATTAATATTGATCATTACTTAAATAAA
64567853 TTA
1 TTA
64567856 CATGACTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 9 0.19
50 7 0.15
52 3 0.06
53 28 0.60
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (52 bp):
TTATAAATAATTTTATCAAAATAATATTAATATTGATCATTACTTAAATAAA
Found at i:64573951 original size:42 final size:43
Alignment explanation
Indices: 64573773--64574039 Score: 240
Period size: 43 Copynumber: 6.3 Consensus size: 43
64573763 AATTATCGGC
* * * **** *
64573773 GTTTTTTAAAAAAAGTGCCGCTAAAAGTACTGCAAATTAGCGGC
1 GTTTTTT-AAAAAAGCGCCGCTAAAAGTCCAGGTCTTTAGCGGT
* *** *
64573817 GTTTTTT--AAAAGCGTCGCTAAAAGTGGTGGTCTTTAGCAGT
1 GTTTTTTAAAAAAGCGCCGCTAAAAGTCCAGGTCTTTAGCGGT
* ** * * * *
64573858 TTTTTTTAAAAAAGCATCGTTAAAAGTCCAGGTATTTAGTGGC
1 GTTTTTTAAAAAAGCGCCGCTAAAAGTCCAGGTCTTTAGCGGT
*
64573901 GTTTTTTAAAAAAGCGCCGCTAAAAGTCCAGGTATTTAGC-GT
1 GTTTTTTAAAAAAGCGCCGCTAAAAGTCCAGGTCTTTAGCGGT
*
64573943 GTATTTTAAAAAAGCGCCGCTAAAAGTCCTA-GTCTTTAGCGGT
1 GTTTTTTAAAAAAGCGCCGCTAAAAGTCC-AGGTCTTTAGCGGT
* ** *
64573986 GTTTTTT--AAAAGCGCCACTAAAAGTCCTTGTCTTTAGCGGC
1 GTTTTTTAAAAAAGCGCCGCTAAAAGTCCAGGTCTTTAGCGGT
64574027 GTTTTTTAAAAAA
1 GTTTTTTAAAAAA
64574040 ACGTTACTAA
Statistics
Matches: 184, Mismatches: 32, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
41 67 0.36
42 37 0.20
43 73 0.40
44 7 0.04
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (43 bp):
GTTTTTTAAAAAAGCGCCGCTAAAAGTCCAGGTCTTTAGCGGT
Found at i:64574371 original size:50 final size:50
Alignment explanation
Indices: 64574175--64574373 Score: 213
Period size: 50 Copynumber: 4.0 Consensus size: 50
64574165 TTTCCTGTAG
* * *
64574175 TGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTGCCCA-AT
1 TGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGT-ACCAGAT
* * * * *
64574225 AGCTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCC-GAT
1 TG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGAT
* * *
64574276 GGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
1 TGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
** * * *
64574326 TGTTAGGTCGTATGTGTAGTACTAAGTACAGGCTACAATGCGTACCAG
1 TGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG
64574374 GGAGCTTCAG
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
49 2 0.02
50 84 0.67
51 40 0.32
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (50 bp):
TGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
Found at i:64584095 original size:48 final size:48
Alignment explanation
Indices: 64583992--64584235 Score: 371
Period size: 48 Copynumber: 5.0 Consensus size: 48
64583982 CAAGATAAAT
* * ***
64583992 ATATATATGTGTGGTAAAGCCGAATGGCGTGAATAAAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGC-T-AATGTGAAATATGTATGAG
64584042 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64584090 ATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
64584138 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
64584186 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATACGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64584234 AT
1 AT
64584236 GTGTGTATAT
Statistics
Matches: 182, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 155 0.85
49 1 0.01
50 26 0.14
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:64584426 original size:37 final size:37
Alignment explanation
Indices: 64584376--64584478 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
64584366 GGAAATATAT
64584376 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* *
64584413 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
64584450 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATAACTACGTGTGG
64584479 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
Found at i:64585137 original size:14 final size:14
Alignment explanation
Indices: 64585118--64585150 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
64585108 AATATGACAT
64585118 CTTTTGAATGTTTA
1 CTTTTGAATGTTTA
64585132 CTTTTGAATGTTTA
1 CTTTTGAATGTTTA
64585146 CTTTT
1 CTTTT
64585151 ATAAGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.12, T:0.61
Consensus pattern (14 bp):
CTTTTGAATGTTTA
Found at i:64586672 original size:40 final size:40
Alignment explanation
Indices: 64586595--64586772 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
64586585 AAACCAAGTA
* *
64586595 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
64586634 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64586674 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64586714 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
64586754 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64586773 TTATCATCCG
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 113 0.88
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64595074 original size:40 final size:40
Alignment explanation
Indices: 64594976--64595238 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
64594966 TCCTCGTTCA
* * * * *
64594976 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
64595015 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
64595055 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64595095 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64595135 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
64595175 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
64595215 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64595239 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64599498 original size:44 final size:42
Alignment explanation
Indices: 64599435--64599542 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 42
64599425 ATAGGATTCA
* * *
64599435 ATATATGATTTTGTGTAAGACCACATTTGGGACGTTGGCATC
1 ATATATGATTTCGTGTAAGACCACATTTGGGACATCGGCATC
**
64599477 GACT-TATGATTTACGTGTAAGACCATGTTTGGGACATCGGCATC
1 -A-TATATGATTT-CGTGTAAGACCACATTTGGGACATCGGCATC
*
64599521 ATATTTGATTTCGTGTAAGACC
1 ATATATGATTTCGTGTAAGACC
64599543 CTGTCTGGGA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 12 0.21
43 17 0.30
44 27 0.48
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ATATATGATTTCGTGTAAGACCACATTTGGGACATCGGCATC
Found at i:64599568 original size:43 final size:43
Alignment explanation
Indices: 64599435--64599604 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
64599425 ATAGGATTCA
*
64599435 ATATATGATTTTGTGTAAGACCACAT-T-TGGGAC-GTTGGCATCG
1 ATATATGATTTCGTGTAAGACC-C-TGTCTGGGACAG-TGGCATCG
* *
64599478 ACT-TATGATTTACGTGTAAGACCATGTTTGGGACA-TCGGCATC-
1 A-TATATGATTT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCG
*
64599521 ATATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 ATATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
* * * * * *
64599564 ATATTTGATTACATATAAGACTAC-GTCTGGGACATTGGCAT
1 ATATATGATTTCGTGTAAGAC-CCTGTCTGGGACAGTGGCAT
64599605 TGTATGAGCT
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 29 0.27
43 54 0.50
44 24 0.22
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ATATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
Found at i:64609071 original size:27 final size:27
Alignment explanation
Indices: 64609041--64609095 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
64609031 TCAATCTATC
*
64609041 AACCACAACCCAGATTGCATCTTTCTT
1 AACCACAACCAAGATTGCATCTTTCTT
64609068 AACCACAACCAAGATTGCATCTTTCTT
1 AACCACAACCAAGATTGCATCTTTCTT
64609095 A
1 A
64609096 CTCGGTGACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.31, G:0.07, T:0.29
Consensus pattern (27 bp):
AACCACAACCAAGATTGCATCTTTCTT
Found at i:64626777 original size:40 final size:40
Alignment explanation
Indices: 64626723--64626957 Score: 366
Period size: 40 Copynumber: 5.9 Consensus size: 40
64626713 ATTGAGAGTT
* *
64626723 ATATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
64626763 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
64626803 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
64626843 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
64626883 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
64626923 ATATATCTGGGTTAA-ACCTCGAAG-GCATTCGTGCT
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
64626958 GGAATTATAA
Statistics
Matches: 181, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 13 0.07
40 168 0.93
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:64626879 original size:23 final size:22
Alignment explanation
Indices: 64626773--64626879 Score: 54
Period size: 23 Copynumber: 5.2 Consensus size: 22
64626763 TTATATCCGG
64626773 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGT-CCGAAGAGCATTCGT
* * * *
64626796 GCT-AGT--G-ATA-TATCCGG
1 GCTAAGTCCGAAGAGCATTCGT
64626813 GCTAAGTCTCGAAGAGCATTCGT
1 GCTAAGTC-CGAAGAGCATTCGT
* * *
64626836 GCT-AGT--G-ATA-TATTCGG
1 GCTAAGTCCGAAGAGCATTCGT
64626853 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGT-CCGAAGAGCATTCGT
64626876 GCTA
1 GCTA
64626880 GTGTTATATC
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 15 0.26
18 10 0.17
19 2 0.03
21 2 0.03
22 10 0.17
23 19 0.33
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (22 bp):
GCTAAGTCCGAAGAGCATTCGT
Found at i:64627032 original size:29 final size:28
Alignment explanation
Indices: 64626997--64627182 Score: 135
Period size: 29 Copynumber: 6.5 Consensus size: 28
64626987 CTTCAACCGA
* *
64626997 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * * *
64627026 GCACTATGTGTGTGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* * *
64627054 GCACTATGTGTGTGAGATTGGTAGTTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * * *
64627083 GCACTATGTGTGCAAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
64627111 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * * *
64627140 GCACTATGTGTGTGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
64627168 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
64627183 AATCAGTCAG
Statistics
Matches: 121, Mismatches: 29, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
28 58 0.48
29 63 0.52
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:64627055 original size:57 final size:57
Alignment explanation
Indices: 64626967--64627189 Score: 302
Period size: 57 Copynumber: 3.9 Consensus size: 57
64626957 TGGAATTATA
* * * *
64626967 AGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
** * **
64627024 AGGCACTATGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAGTTG
1 AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
** *
64627081 AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTG
1 AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
** * *
64627138 AGGCACTATGTGTGTGAGTTCTTTAATCGAGCACTATGTGTGCGAAATCAGT
1 AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
64627190 CAGTGGGCAC
Statistics
Matches: 147, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 147 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (57 bp):
AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
Found at i:64627065 original size:28 final size:27
Alignment explanation
Indices: 64627026--64627179 Score: 155
Period size: 28 Copynumber: 5.4 Consensus size: 27
64627016 AGTAGTTGAG
64627026 GCACTATGTGTGTGAGTTCTTCAATCGA
1 GCACTATGTGTGTGAGTTCTT-AATCGA
** * *
64627054 GCACTATGTGTGTGAGATTGGTAGTTGA
1 GCACTATGTGTGTGAG-TTCTTAATCGA
**
64627082 GGCACTATGTGTGCAAGTTCTTCAATCGA
1 -GCACTATGTGTGTGAGTTCTT-AATCGA
* ** *
64627111 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGTGAG-TTCTTAATCGA
64627139 GGCACTATGTGTGTGAGTTCTTTAATCGA
1 -GCACTATGTGTGTGAGTTC-TTAATCGA
64627168 GCACTATGTGTG
1 GCACTATGTGTG
64627180 CGAAATCAGT
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
28 57 0.56
29 45 0.44
ACGTcount: A:0.22, C:0.14, G:0.29, T:0.34
Consensus pattern (27 bp):
GCACTATGTGTGTGAGTTCTTAATCGA
Found at i:64627167 original size:114 final size:114
Alignment explanation
Indices: 64626967--64627179 Score: 354
Period size: 114 Copynumber: 1.9 Consensus size: 114
64626957 TGGAATTATA
* *
64626967 AGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTGAGGCACTA
1 AGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAATTGAGGCACTA
64627032 TGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAGTTG
66 TGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAGTTG
* * * **
64627081 AGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACTA
1 AGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAATTGAGGCACTA
*
64627146 TGTGTGTGAGTTCTTTAATCGAGCACTATGTGTG
66 TGTGTGTGAGTTCTTCAATCGAGCACTATGTGTG
64627180 CGAAATCAGT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 91 1.00
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (114 bp):
AGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAATTGAGGCACTA
TGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAGTTG
Found at i:64638146 original size:51 final size:51
Alignment explanation
Indices: 64638066--64638165 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
64638056 TTGATGCAAG
*
64638066 CATCCAAGCTCGTTGAAAGGTCTGAGTTCA-TAGTGGATGTGATT-CATGTAA
1 CATCCAAGCTCGTTGAAAGGTCCGAGTTCATTAG-GGATGTG-TTACATGTAA
* * *
64638117 CATCCGAGCTCGTTGAGAGGTCCGTGTTCATTAGGGATGTGTTACATGT
1 CATCCAAGCTCGTTGAAAGGTCCGAGTTCATTAGGGATGTGTTACATGT
64638166 TATGTGGTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 2 0.05
51 38 0.88
52 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (51 bp):
CATCCAAGCTCGTTGAAAGGTCCGAGTTCATTAGGGATGTGTTACATGTAA
Found at i:64651511 original size:14 final size:14
Alignment explanation
Indices: 64651492--64651523 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
64651482 GAGGTGTTAC
64651492 ACTCAATAGTTCCA
1 ACTCAATAGTTCCA
64651506 ACTCAATAGTTCCA
1 ACTCAATAGTTCCA
64651520 ACTC
1 ACTC
64651524 TAGTGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.31, G:0.06, T:0.28
Consensus pattern (14 bp):
ACTCAATAGTTCCA
Found at i:64651728 original size:39 final size:39
Alignment explanation
Indices: 64651617--64651729 Score: 138
Period size: 39 Copynumber: 2.9 Consensus size: 39
64651607 TACACGTATT
* * *
64651617 ATCAAATAACATTTAAGCATATATCACAATAGTAATATA
1 ATCACATAACATTTAAGCATATATCACAATACTCATATA
* * *
64651656 ATTACATATCATTTAAGCAT-TAATTACAATACTCATATA
1 ATCACATAACATTTAAGCATAT-ATCACAATACTCATATA
* *
64651695 ATCACATAACATTCAAGTATATATCACAATACTCA
1 ATCACATAACATTTAAGCATATATCACAATACTCA
64651730 AAAACATGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
38 1 0.02
39 59 0.97
40 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.04, T:0.33
Consensus pattern (39 bp):
ATCACATAACATTTAAGCATATATCACAATACTCATATA
Found at i:64653668 original size:42 final size:42
Alignment explanation
Indices: 64653609--64653763 Score: 197
Period size: 42 Copynumber: 3.7 Consensus size: 42
64653599 CTAAGACTAT
64653609 GTGTAAGACCATATCTGGGATATGGCATCTG-TATGAGGCTTC
1 GTGTAAGACCATATCTGGGATATGGCATC-GATATGAGGCTTC
*
64653651 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGGCTTC
* * * * *
64653693 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGA-GATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGGCT-TC
* *
64653736 TTGTAAGACCATATCTGGGATTTGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
64653764 TGGTATGGTA
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 66 0.67
43 32 0.32
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGGCTTC
Found at i:64657826 original size:94 final size:92
Alignment explanation
Indices: 64657728--64658014 Score: 264
Period size: 94 Copynumber: 3.1 Consensus size: 92
64657718 TGATGTGAAT
* *** *
64657728 ACATGGAAATTTATATTTTGATTTAGGATTTTATGAGATGAATGTGAACATGCATATATGTGATA
1 ACATGGAAATTTATA-TCTGA-TTAGGATCCAATGTGATGAATGTGAACATGCATATATGTGATA
64657793 AGGCCGAATGGCCAATGTGATGAATGTGA
64 AGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
64657822 ACAT-G-CA--TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGT
1 ACATGGAAATTTATATCTGATTA-G--G-AT--CCAATGTGATGAATGTGAACATGCATATATGT
64657883 GATAAGGCCGAATGGCCAATGTGATGAATGTGA
60 GATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * * *
64657916 ACTTGCATATGTGTGATAAGGCCGAAT-GG--CCAATGTGATGAACGTGAACATGCATATATGTG
1 ACATGGAAAT-T-T-AT-A-TCTGATTAGGATCCAATGTGATGAATGTGAACATGCATATATGTG
64657978 ATAAGGCCGAATGGCCAATGTGATGAATGTGA
61 ATAAGGCCGAATGGCCAATGTGATGAATGTGA
64658010 ACATG
1 ACATG
64658015 CATATATGTG
Statistics
Matches: 159, Mismatches: 19, Indels: 30
0.76 0.09 0.14
Matches are distributed among these distances:
88 2 0.01
89 5 0.03
90 4 0.03
91 1 0.01
92 3 0.02
93 1 0.01
94 134 0.84
96 1 0.01
99 1 0.01
100 1 0.01
101 3 0.02
102 1 0.01
103 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (92 bp):
ACATGGAAATTTATATCTGATTAGGATCCAATGTGATGAATGTGAACATGCATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGA
Found at i:64658071 original size:47 final size:47
Alignment explanation
Indices: 64657764--64658051 Score: 504
Period size: 47 Copynumber: 6.1 Consensus size: 47
64657754 GATTTTATGA
64657764 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
64657811 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
64657858 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
64657905 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
64657952 GATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
** **
64657999 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGTTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
64658046 GATGAA
1 GATGAA
64658052 CGTGGAAGTG
Statistics
Matches: 229, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 229 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:64658081 original size:141 final size:141
Alignment explanation
Indices: 64657764--64658091 Score: 462
Period size: 141 Copynumber: 2.3 Consensus size: 141
64657754 GATTTTATGA
* * * * * *
64657764 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAACGTGAACTTACATATGTGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
*
64657829 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCAGA
64657894 ATGGCCAATGT
131 ATGGCCAATGT
* * *
64657905 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
1 GATGAACGTGAACTTACATATGTGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
* *
64657970 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCAGA
**
64658035 ATGGTTAATGT
131 ATGGCCAATGT
* * * *
64658046 GATGAACGTGGAAGTGTATATATGTG-GCGAA-GCCGAATGGCTAATG
1 GATGAACGT-GAACT-TACATATGTGTGAGAAGGCCGAATGGCCAATG
64658092 CGAAATGTGT
Statistics
Matches: 170, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
141 155 0.91
142 7 0.04
143 8 0.05
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
GATGAACGTGAACTTACATATGTGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCAGA
ATGGCCAATGT
Found at i:64658181 original size:96 final size:96
Alignment explanation
Indices: 64658075--64658251 Score: 309
Period size: 96 Copynumber: 1.8 Consensus size: 96
64658065 ATATGTGGCG
*
64658075 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGCG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGCG
*
64658140 AAACGTGTATGAGATGGACGGATATGAGGTA
66 AAACATGTATGAGATGGACGGATATGAGGTA
*
64658171 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGCG
* *
64658236 AGATATGTATGAGATG
66 AAACATGTATGAGATG
64658252 TGTGTGTATA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.34, C:0.10, G:0.33, T:0.23
Consensus pattern (96 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGCG
AAACATGTATGAGATGGACGGATATGAGGTA
Found at i:64658184 original size:50 final size:46
Alignment explanation
Indices: 64658075--64658251 Score: 273
Period size: 46 Copynumber: 3.8 Consensus size: 46
64658065 ATATGTGGCG
*
64658075 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
64658121 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGACGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGAT----GGATATGAGGTA
64658171 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * **
64658217 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
64658252 TGTGTGTATA
Statistics
Matches: 122, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
46 76 0.62
50 46 0.38
ACGTcount: A:0.34, C:0.10, G:0.33, T:0.23
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:64660367 original size:19 final size:20
Alignment explanation
Indices: 64660339--64660381 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
64660329 TCATTTTTAA
*
64660339 AAAAATATATTTTATTTTCT
1 AAAAATATATTTGATTTTCT
64660359 AAAAA-ATATTTGATTTTCT
1 AAAAATATATTTGATTTTCT
64660378 AAAA
1 AAAA
64660382 GCCATAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (20 bp):
AAAAATATATTTGATTTTCT
Found at i:64673343 original size:35 final size:35
Alignment explanation
Indices: 64673304--64673374 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
64673294 ATGTTCAGTA
64673304 CAGAAATCAGACAGTCAGGATACTCGTTTATGGGT
1 CAGAAATCAGACAGTCAGGATACTCGTTTATGGGT
64673339 CAGAAATCAGACAGTCAGGATACTCGTTTATGGGT
1 CAGAAATCAGACAGTCAGGATACTCGTTTATGGGT
64673374 C
1 C
64673375 TAAGTAATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (35 bp):
CAGAAATCAGACAGTCAGGATACTCGTTTATGGGT
Found at i:64682895 original size:47 final size:47
Alignment explanation
Indices: 64682714--64683744 Score: 1573
Period size: 47 Copynumber: 21.6 Consensus size: 47
64682704 TATTTGAATA
*
64682714 AATGTGAAAGTGTATATATATGTGATAAGGGCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
64682763 AATGTGAAAGCGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64682812 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
64682861 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64682908 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64682955 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
64683004 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683050 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683099 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683148 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
64683195 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
64683242 GATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683289 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683338 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683387 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683436 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683483 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
64683530 AATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
64683579 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
64683626 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * *
64683673 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAA--TGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
64683718 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64683745 TCCCGAAGGG
Statistics
Matches: 925, Mismatches: 44, Indels: 30
0.93 0.04 0.03
Matches are distributed among these distances:
45 28 0.03
46 20 0.02
47 455 0.49
48 25 0.03
49 395 0.43
51 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:64682976 original size:143 final size:143
Alignment explanation
Indices: 64682714--64683744 Score: 1707
Period size: 143 Copynumber: 7.2 Consensus size: 143
64682704 TATTTGAATA
* *
64682714 AATGTGAAAGTGTATATATATGTGATAAGGGCTAATGGCCAATGTGATGAATGTGAAAGCGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTA
64682779 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64682844 TAATGGCCGATGTGATG
127 TAATGGCCGATGTGATG
64682861 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64682926 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
64682991 GGCCGATGTGATG
131 GGCCGATGTGATG
64683004 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
64683068 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64683133 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
*
64683148 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * *
64683213 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG--TATATATGTGATAAGGCCGAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
64683276 GGCCAATGTGATG
131 GGCCGATGTGATG
*
64683289 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
64683354 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64683419 TAATGGCCGATGTGATG
127 TAATGGCCGATGTGATG
*
64683436 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
64683501 TGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
64683566 GGCCGATGTGATG
131 GGCCGATGTGATG
* *
64683579 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * *
64683644 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
64683707 GGCC-A-ATGATG
131 GGCCGATGTGATG
* *
64683718 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64683745 TCCCGAAGGG
Statistics
Matches: 843, Mismatches: 32, Indels: 26
0.94 0.04 0.03
Matches are distributed among these distances:
139 30 0.04
140 1 0.00
141 67 0.08
142 20 0.02
143 394 0.47
144 122 0.14
145 152 0.18
147 57 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:64683074 original size:27 final size:27
Alignment explanation
Indices: 64683042--64683124 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
64683032 CCTAATGGCC
64683042 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* * ***
64683069 ATGTGAT-AAGGCCG-AA-TG--GCCA-
1 ATGTGATGAATG-TGAAAGTGTATATAT
64683091 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
64683118 ATGTGAT
1 ATGTGAT
64683125 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 6 0.15
24 2 0.05
25 2 0.05
26 6 0.15
27 15 0.38
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:64683481 original size:22 final size:22
Alignment explanation
Indices: 64683453--64683528 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
64683443 AAGTGTATAT
64683453 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
64683475 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
64683499 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
64683522 ATGTGAT
1 ATGTGAT
64683529 GAATATGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:64686147 original size:79 final size:80
Alignment explanation
Indices: 64686000--64686317 Score: 491
Period size: 79 Copynumber: 4.0 Consensus size: 80
64685990 AGGTCTCGAC
64686000 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
64686063 AGCATTCATGCTAGT
66 AGCATTCATGCTAGT
64686078 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
*
64686142 AGCATTCGTGCTAGT
66 AGCATTCATGCTAGT
64686157 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
*
64686222 AGCATTCGTGCTAGT
66 AGCATTCATGCTAGT
* * * * * * * * *
64686237 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
* *
64686301 AGCAATCATGCTGGT
66 AGCATTCATGCTAGT
64686316 GA
1 GA
64686318 CGTGTATTCG
Statistics
Matches: 224, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
78 42 0.19
79 107 0.48
80 75 0.33
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
AGCATTCATGCTAGT
Found at i:64686154 original size:40 final size:40
Alignment explanation
Indices: 64686000--64686317 Score: 482
Period size: 40 Copynumber: 8.1 Consensus size: 40
64685990 AGGTCTCGAC
64686000 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
64686039 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
64686078 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
64686117 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
64686157 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
64686197 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
64686237 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
64686276 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
64686316 GA
1 GA
64686318 CGTGTATTCG
Statistics
Matches: 259, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 115 0.44
40 144 0.56
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:64686259 original size:119 final size:119
Alignment explanation
Indices: 64686004--64686317 Score: 488
Period size: 119 Copynumber: 2.6 Consensus size: 119
64685994 CTCGACGATG
* *
64686004 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCAT
1 ATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
64686068 TCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATAT
**
64686122 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
64686187 TCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
66 TCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATAT
* * * * * *
64686242 ATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAA
1 ATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
64686306 TCATGCTGGTGA
66 TCATGCTAGTGA
64686318 CGTGTATTCG
Statistics
Matches: 181, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
118 51 0.28
119 95 0.52
120 35 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
ATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATAT
Found at i:64689828 original size:49 final size:49
Alignment explanation
Indices: 64689719--64690217 Score: 725
Period size: 47 Copynumber: 10.6 Consensus size: 49
64689709 TATTTGAATA
*
64689719 AATGTGTAAA-TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
64689768 AATGT--AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64689815 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64689862 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64689909 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
64689958 AATGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
64690005 AATGTGAAAGTG---ATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64690051 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
64690100 AATGTGAAAGTG---ATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
64690146 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64690193 GA--TGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
64690218 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 18, Indels: 30
0.90 0.04 0.06
Matches are distributed among these distances:
44 5 0.01
45 16 0.04
46 87 0.21
47 203 0.48
49 108 0.26
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:64690092 original size:142 final size:143
Alignment explanation
Indices: 64689719--64690217 Score: 807
Period size: 142 Copynumber: 3.5 Consensus size: 143
64689709 TATTTGAATA
*
64689719 AATGTGTAAATGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGT--AAGTGTATA
1 AATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
64689782 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
64689847 ATAGCCAATGTGATG
129 ATGGCCGATGTGATG
64689862 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
64689927 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64689992 GGCCGATGTGATG
131 GGCCGATGTGATG
*
64690005 AATGTGAAAGTG-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
64690069 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64690133 GGCCGATGTGATG
131 GGCCGATGTGATG
* * * * * *
64690146 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA--TGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64690208 -ATGTGATAAG
66 TATGTGATAAG
64690218 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 16, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
138 10 0.03
139 1 0.00
140 12 0.04
141 87 0.26
142 124 0.37
143 103 0.31
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:64695135 original size:53 final size:53
Alignment explanation
Indices: 64695066--64695169 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
64695056 GGAAAAACAA
** *
64695066 AAAAAAAATTGTTCATCTTTTATCATCCTTGGCCGAATGTTCTAAGAAGAAAG
1 AAAAAAAATTGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAGAAGAAAG
64695119 AAAAAAAATTGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAGAAGAA
1 AAAAAAAATTGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAGAAGAA
64695170 GGGGGAAGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.31
Consensus pattern (53 bp):
AAAAAAAATTGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAGAAGAAAG
Found at i:64696233 original size:27 final size:27
Alignment explanation
Indices: 64696202--64696379 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64696192 TAAATTGTAC
*
64696202 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
64696229 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64696255 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
64696283 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64696310 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
64696338 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64696365 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64696380 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64696263 original size:54 final size:55
Alignment explanation
Indices: 64696202--64696379 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
64696192 TAAATTGTAC
* **
64696202 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
64696257 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
64696310 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
64696365 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64696380 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:64704130 original size:27 final size:27
Alignment explanation
Indices: 64704099--64704276 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64704089 TAAATTGTAC
*
64704099 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
64704126 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64704152 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
64704180 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64704207 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
64704235 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64704262 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64704277 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64704160 original size:54 final size:55
Alignment explanation
Indices: 64704099--64704276 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
64704089 TAAATTGTAC
* **
64704099 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
64704154 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
64704207 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
64704262 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64704277 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:64706759 original size:20 final size:21
Alignment explanation
Indices: 64706736--64706775 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64706726 CCCTTGAAAT
64706736 AGGGC-ACACACCCGTGTGGA
1 AGGGCAACACACCCGTGTGGA
*
64706756 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACACCCGTGTGG
64706776 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGGA
Found at i:64710826 original size:20 final size:20
Alignment explanation
Indices: 64710801--64710840 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
64710791 AATACTAAAC
64710801 TCTGATTCATTTCCCGTCTT
1 TCTGATTCATTTCCCGTCTT
64710821 TCTGATTCATTTCCCGTCTT
1 TCTGATTCATTTCCCGTCTT
64710841 ACACTGAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.10, T:0.50
Consensus pattern (20 bp):
TCTGATTCATTTCCCGTCTT
Found at i:64714925 original size:16 final size:16
Alignment explanation
Indices: 64714904--64714935 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64714894 ACACACGCCC
64714904 GTGTGTCTACCCGTGT
1 GTGTGTCTACCCGTGT
64714920 GTGTGTCTACCCGTGT
1 GTGTGTCTACCCGTGT
64714936 AGACAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.31, T:0.38
Consensus pattern (16 bp):
GTGTGTCTACCCGTGT
Found at i:64715841 original size:48 final size:45
Alignment explanation
Indices: 64715770--64715984 Score: 155
Period size: 46 Copynumber: 4.6 Consensus size: 45
64715760 AAGCTAATAC
* * *
64715770 CATGTCCCAAACAGGTCTCACACTAGCTTGTATCTCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATCT--CGAGGCCGATG
*** ** *
64715818 CATGTCCCAGACATGTCTTACACTAGCTCTCGCCTTAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATCTCGAGGCCGATG
* * * *
64715864 CATGTACCAGACATGTCTTAAACTGGCTTAAATATCTC-AGGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTT---TATCTCGA-GGCCGATG
* * * * *
64715912 CATGTCCCAGACATGTTTTACACTGGCTCTCATACT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTAT-CTCGAGGCCGATG
*
64715958 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
64715985 ACACAAATGG
Statistics
Matches: 131, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
45 1 0.01
46 65 0.50
47 3 0.02
48 60 0.46
49 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATCTCGAGGCCGATG
Found at i:64720251 original size:39 final size:39
Alignment explanation
Indices: 64720180--64720356 Score: 183
Period size: 39 Copynumber: 4.5 Consensus size: 39
64720170 ATTTACTTTT
* * * * * *
64720180 AAGCATATATCATATTACACAGATGATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* ****
64720219 AAGCATATATCACAATACTCATATAATTACATAGTGCTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * * *
64720258 AAGCACATATGACAATACTCATATGATTACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
64720297 AAGCATATATCGCAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
64720336 AAACATATGTCGCAATACTCA
1 AAGCATATATCACAATACTCA
64720357 AAAACATGTT
Statistics
Matches: 113, Mismatches: 25, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:64723649 original size:27 final size:26
Alignment explanation
Indices: 64723587--64723689 Score: 71
Period size: 27 Copynumber: 3.8 Consensus size: 26
64723577 ACAAAACATA
* * * *
64723587 AGGGCATAATCGTCATTCTACCATAC
1 AGGGCATTATGGTCATTTTACCCTAC
*
64723613 AGGGGTATTATGGTCATTTTACCCTAC
1 A-GGGCATTATGGTCATTTTACCCTAC
** * *
64723640 TAGGGCATTACAGTTATTTTACACTAC
1 -AGGGCATTATGGTCATTTTACCCTAC
* * *
64723667 AAGGGTATTTTGGTAATTTTACC
1 -AGGGCATTATGGTCATTTTACC
64723690 AATATTGGGT
Statistics
Matches: 58, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (26 bp):
AGGGCATTATGGTCATTTTACCCTAC
Found at i:64723939 original size:17 final size:18
Alignment explanation
Indices: 64723917--64723951 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
64723907 AATCCATGTG
*
64723917 GGGCCCACGA-GCCCATT
1 GGGCCCACAAGGCCCATT
64723934 GGGCCCACAAGGCCCATT
1 GGGCCCACAAGGCCCATT
64723952 TCGGCCCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.20, C:0.40, G:0.29, T:0.11
Consensus pattern (18 bp):
GGGCCCACAAGGCCCATT
Found at i:64730710 original size:46 final size:46
Alignment explanation
Indices: 64730660--64730835 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
64730650 TGGTTGAGCA
64730660 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
64730706 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
64730751 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
64730799 CCCGAGCTCGTTGAGTTGAGTCCGATTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64730836 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 29 0.27
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.