Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 194 of 332
Found at i:64730816 original size:93 final size:93
Alignment explanation
Indices: 64730657--64730828 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
64730647 GGATGGTTGA
* * *
64730657 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
64730722 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
64730750 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
*
64730815 TGAGTCCGATTTCG
66 TGAGTCCGAGTTCG
64730829 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:64734097 original size:15 final size:15
Alignment explanation
Indices: 64734077--64734106 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64734067 TGATACCTAC
64734077 GTGATTGTTTTTGAA
1 GTGATTGTTTTTGAA
64734092 GTGATTGTTTTTGAA
1 GTGATTGTTTTTGAA
64734107 ATTTTGCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (15 bp):
GTGATTGTTTTTGAA
Found at i:64736247 original size:40 final size:40
Alignment explanation
Indices: 64736193--64736272 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
64736183 TGATTGTGTT
*
64736193 GAGAGAATAATTATTGATTCGTTATTGTTCACTGAACATA
1 GAGAGAATAATTATTGATTCGTTATTGTTCACTAAACATA
*
64736233 GAGAGAATAATTATTGATTTGTTATTGTTCACTAAACATA
1 GAGAGAATAATTATTGATTCGTTATTGTTCACTAAACATA
64736273 TTGAAGTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
GAGAGAATAATTATTGATTCGTTATTGTTCACTAAACATA
Found at i:64739189 original size:30 final size:30
Alignment explanation
Indices: 64739153--64739212 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
64739143 GATAGAAAGC
* *
64739153 TACTACACTAGATGTTATTGCTGGTACATT
1 TACTACACCAGATGTTATTGCTAGTACATT
64739183 TACTACACCAGATGTTATTGCTAGTACATT
1 TACTACACCAGATGTTATTGCTAGTACATT
64739213 CTATCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (30 bp):
TACTACACCAGATGTTATTGCTAGTACATT
Found at i:64744950 original size:48 final size:48
Alignment explanation
Indices: 64744889--64745216 Score: 602
Period size: 48 Copynumber: 6.8 Consensus size: 48
64744879 ATATATATGC
64744889 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
64744937 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
64744985 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
64745033 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
* *
64745081 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
64745129 GTAGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
64745177 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
64745217 GTGTGTATAT
Statistics
Matches: 271, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 271 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
Found at i:64745407 original size:37 final size:37
Alignment explanation
Indices: 64745357--64745459 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
64745347 GGAAATATAT
64745357 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64745394 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
64745431 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCAGGTAAGACCCGATGACTACGTGTGG
64745460 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (37 bp):
TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64747623 original size:46 final size:46
Alignment explanation
Indices: 64747556--64747721 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
64747546 TGTAACCCGC
*
64747556 CCATAAGTGAACTCGGACTCAACTCAATGAGCTTGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTTGGGCATTTGCAT
* * * *
64747602 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTTGG--G-C-ATTTGCAT
* * * *
64747652 CTC-T---CGAACTCGGACTCAACTCAATGAG-TTCGGACATTCGAAT
1 C-CATAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCATTTGCAT
64747695 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
64747722 CAAGTTCGGA
Statistics
Matches: 96, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.06
44 1 0.01
46 54 0.56
47 24 0.25
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAATGAGCTTGGGCATTTGCAT
Found at i:64747670 original size:93 final size:93
Alignment explanation
Indices: 64747564--64747735 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
64747554 GCCCATAAGT
* * * *
64747564 GAACTCGGACTCAACTCAATGAGCTT-GGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAATGAG-TTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
*
64747628 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACAAGCTCGGATGCCTAGTTACATCTCTC
64747657 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
*
64747722 CAAGTTCGGATGCC
66 CAAGCTCGGATGCC
64747736 CAAACATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGTTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:64747750 original size:46 final size:46
Alignment explanation
Indices: 64747607--64747750 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 46
64747597 TGCATCCATA
* * *
64747607 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AACATC-CT
* * **** *
64747656 --CGAACTCGGACTCAACTCAATGAGTTCGGACATTC-GA-ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCC-T
*
64747699 AAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
64747746 AGTGA
1 AGTGA
64747751 CATGTAACTT
Statistics
Matches: 72, Mismatches: 17, Indels: 15
0.69 0.16 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.06
44 1 0.01
46 33 0.46
47 29 0.40
48 4 0.06
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
Found at i:64750150 original size:37 final size:37
Alignment explanation
Indices: 64750100--64750178 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64750090 TTATTACGAA
* * * *
64750100 GTCTTACCTGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
64750137 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
64750174 GTCTT
1 GTCTT
64750179 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:64750375 original size:47 final size:47
Alignment explanation
Indices: 64750297--64750472 Score: 255
Period size: 47 Copynumber: 3.7 Consensus size: 47
64750287 CCCTTCGGGA
* * * * *
64750297 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * *
64750344 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
64750391 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
64750438 CTTATCACATATATACA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
64750473 AGAATCCTAA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.01
47 116 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:64754720 original size:43 final size:43
Alignment explanation
Indices: 64754659--64754746 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
64754649 CGGGTAGTCC
64754659 TAAAAAAAGAGGGAGATAGGTTGGAACAAGCATATATCGAATG
1 TAAAAAAAGAGGGAGATAGGTTGGAACAAGCATATATCGAATG
64754702 TAAAAAAAGAGGGAGATAGGTTGGAACAAGCATATATCGAATG
1 TAAAAAAAGAGGGAGATAGGTTGGAACAAGCATATATCGAATG
64754745 TA
1 TA
64754747 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.47, C:0.07, G:0.27, T:0.19
Consensus pattern (43 bp):
TAAAAAAAGAGGGAGATAGGTTGGAACAAGCATATATCGAATG
Found at i:64755929 original size:63 final size:66
Alignment explanation
Indices: 64755763--64755929 Score: 205
Period size: 68 Copynumber: 2.5 Consensus size: 66
64755753 GCTTTCAAGG
* * **
64755763 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAATTTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT-ATTAGTT
64755828 TT
65 TT
* * *
64755830 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTA-TTT-TTAGTT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTATTAGTT
64755893 TT
65 TT
** *
64755895 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
64755930 TTTAATTTTT
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
63 31 0.35
65 6 0.07
67 3 0.03
68 48 0.55
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (66 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTATTAGTTT
T
Found at i:64756046 original size:68 final size:68
Alignment explanation
Indices: 64755929--64756153 Score: 289
Period size: 68 Copynumber: 3.2 Consensus size: 68
64755919 GAGTTAAGCC
64755929 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTCAATTTTTG--TTT-AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGGACACGC
64755993 TGAGGTA
62 TGAGGTA
*
64756000 TTTTCAATTTTTGTTT-TAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TTTTCAATTTTTGTTTAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGGACACGCTGA
64756064 GGTA
65 GGTA
* *
64756068 ATTTCAATTTCTGTTTCAAAAAATCAACTCATATTGC-GA-GTGAGTTGAGCCTCAGGTCACACG
1 TTTTCAATTTTTGTTT---AAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGG--ACACG
64756131 -TGAGGTA
61 CTGAGGTA
*
64756138 TTTTCAATTTTCGTTT
1 TTTTCAATTTTTGTTT
64756154 CAATTTCTGT
Statistics
Matches: 139, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
68 64 0.46
69 17 0.12
70 25 0.18
71 9 0.06
72 24 0.17
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (68 bp):
TTTTCAATTTTTGTTTAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTA
Found at i:64756242 original size:86 final size:81
Alignment explanation
Indices: 64756069--64756242 Score: 253
Period size: 86 Copynumber: 2.1 Consensus size: 81
64756059 GCTGAGGTAA
64756069 TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGTGAGTTGAGCCTCAGGTCACACGTGA
1 TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGTGAGTTGAGCCTCAGG-CACACGTGA
*
64756134 GGTATTTTCAATTTTCG
65 GGTAATTTCAATTTTCG
64756151 TTTCAATTTCTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC
1 TTTCAATTTCTGTTTC--AAAAAATCAACTCATATTGC--GA-GTGAGTTGAGCCTCAGGCACAC
64756215 GCTGAGGTAATTTCAA-TTTCTG
61 G-TGAGGTAATTTCAATTTTC-G
64756237 TTTCAA
1 TTTCAA
64756243 AAATCAACTC
Statistics
Matches: 84, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
82 16 0.19
84 20 0.24
85 9 0.11
86 22 0.26
87 17 0.20
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (81 bp):
TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGTGAGTTGAGCCTCAGGCACACGTGAG
GTAATTTCAATTTTCG
Found at i:64756271 original size:71 final size:72
Alignment explanation
Indices: 64756151--64756611 Score: 417
Period size: 71 Copynumber: 6.2 Consensus size: 72
64756141 TCAATTTTCG
64756151 TTTCAATTTCTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTCTGTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
64756216 CTGAGGTAA
64 CTGAGGTAA
*
64756225 TTTCAATTTCTGTTTC-AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
1 TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACG
64756289 C-GAGGTATTTTCAA
64 CTGAGG-----T-AA
** * *** * * * *
64756303 TTTCTTTTTTAATTTCTGTTTTCAAAAA--AAATCACTCATATTGCGA---GAGGTGAG-TTGAG
1 TTTC------AATTTCTGTTTCAAAAAATCAACTCA-T-ATTGCGAGAGGTGAGTTGAGCCTCAG
* *
64756362 CCTGGCACGCTGAGGTAT
58 ---GACACGCTGAGGTAA
*
64756380 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
1 TTTCAATTTCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACAC
* *
64756445 GCCGAGGTAT
63 GCTGAGGTAA
64756455 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
64756519 TGAGGT-A
65 TGAGGTAA
*
64756526 TTTCAATTTCTG-TTCAAAAAATCAACTCATATTGCGAGA-GAGAGTTGAGCCTCAGGTCACACG
1 TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACG
* *
64756589 C-CAGGTAT
64 CTGAGGTAA
64756597 TTTCAATTTCTGTTT
1 TTTCAATTTCTGTTT
64756612 TTCAATTTCT
Statistics
Matches: 322, Mismatches: 32, Indels: 68
0.76 0.08 0.16
Matches are distributed among these distances:
69 19 0.06
70 27 0.08
71 78 0.24
72 30 0.09
73 7 0.02
74 61 0.19
75 37 0.11
76 3 0.01
77 6 0.02
78 7 0.02
81 3 0.01
82 12 0.04
83 9 0.03
84 13 0.04
85 10 0.03
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (72 bp):
TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAA
Found at i:64756330 original size:156 final size:159
Alignment explanation
Indices: 64756017--64757261 Score: 981
Period size: 163 Copynumber: 7.8 Consensus size: 159
64756007 TTTTTGTTTT
64756017 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
64756082 TTCAAAAAATCAACTCATATTGC--GA-GTGAGTTGAGCCTCAGGTCACACGTGAGGTATTTTCA
66 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
* *
64756144 ATTT-TCGTTTCAATTTCTG-TTTCAAAAAA
131 ATTTCTCTTTTTAATTTCTGTTTTC--AAAA
64756173 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
64756238 TTC-AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
66 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
64756302 ATTTCT-TTTTTAATTTCTGTTTTCAAAAAA
131 ATTTCTCTTTTTAATTTCTGTTTTC--AAAA
*
64756332 AATC-ACTCATATTGCGAGAGGTGAGTTGAGCCT--GG-CACGCTGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
64756393 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGG-----T
65 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG-CGAGGTATTTT
64756453 --ATTT-TC-----AATTTCTGTTTTC-AAA
129 CAATTTCTCTTTTTAATTTCTGTTTTCAAAA
64756475 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTCTG-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* *
64756538 TTCAAAAAATCAACTCATATTGCGAGA-GAGAGTTGAGCCTCAGGTCACACGCCAGGTATTTTCA
66 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
* *
64756602 ATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAA
131 ATTTCTCTTTTT-AATTTCTG-TTTTC--AAAA
* * * **
64756635 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTGTTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTC
* * * **
64756699 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACATTGAGGT
63 TG--TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-GCGAGGT
*
64756764 ATTTTTCAA--------TTT-A--TAT-TTTTCAAAAA
124 A-TTTTCAATTTCTCTTTTTAATTTCTGTTTTC-AAAA
* * * *
64756790 AATCAACTC--ATTGCGAGATGTGAGTTGAGCCT-TGGTCACATG-TCGAGGTATTTTCAAAATC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTAATTTC--AA--
* * * *
64756851 TGTTTTTTAGATTCTGTTTTC-AAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTTAGCTC
59 -------T---TTCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
** * *
64756915 ACGTGCTGAGCTATTTTCAATTTCT-TTTTT--TTTC------AAAAA
113 ACACGC-GAGGTATTTTCAATTTCTCTTTTTAATTTCTGTTTTCAAAA
* * * * * *
64756954 AATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTGCGAGA-GTTGAGTTGAGTC
1 AA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--------CTCAG-GACACGCTGAGGT-A--A
* * *
64757018 TTTTAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCA-GTCAC
53 TTTCAATTTC--TGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGGTCAC
** ** * * **
64757081 ATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAG-TTTCAAAA
115 A-CGCGAGGTATTTTCAATTTCT-CTTTTTAATTTCTGTTTTCAAAA
* * * *
64757127 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTTAAATTTATA
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAA-TT-TC
* * * ** *
64757192 TTTTTC-AAAAATCAACTCATATTGCAAGATGTGAGTTGAGCCTTGGGTTCACATGTCGAGGTAT
63 TGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACG-CGAGGTAT
64757256 TTTCAA
126 TTTCAA
64757262 AATCTACTTT
Statistics
Matches: 906, Mismatches: 80, Indels: 199
0.76 0.07 0.17
Matches are distributed among these distances:
142 4 0.00
143 29 0.03
144 56 0.06
146 27 0.03
147 12 0.01
149 4 0.00
150 2 0.00
151 5 0.01
152 14 0.02
153 26 0.03
154 2 0.00
155 57 0.06
156 86 0.09
157 52 0.06
158 86 0.09
159 17 0.02
160 38 0.04
162 67 0.07
163 87 0.10
164 72 0.08
165 15 0.02
166 13 0.01
167 44 0.05
168 21 0.02
169 8 0.01
170 8 0.01
172 30 0.03
173 6 0.01
174 5 0.01
175 7 0.01
176 2 0.00
177 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (159 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
ATTTCTCTTTTTAATTTCTGTTTTCAAAA
Found at i:64756357 original size:158 final size:161
Alignment explanation
Indices: 64756017--64756775 Score: 1013
Period size: 158 Copynumber: 4.8 Consensus size: 161
64756007 TTTTTGTTTT
64756017 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
64756082 TTCAAAAAATCAACTCATATTGC--GA-GTGAGTTGAGCCTCAGGTCACACGTGAGGTATTTTCA
66 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
* *
64756144 ATTT-TCGTTTCAATTTCTG-TTTCAAAAAA
131 ATTTCTCTTTTTAATTTCTGTTTTCAAAAAA
64756173 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
64756238 TTC-AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
66 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
64756302 ATTTCT-TTTTTAATTTCTGTTTTCAAAAAA
131 ATTTCTCTTTTTAATTTCTGTTTTCAAAAAA
*
64756332 AATC-ACTCATATTGCGAGAGGTGAGTTGAGCCT--GG-CACGCTGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
64756393 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGG-----T
65 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG-CGAGGTATTTT
64756453 --ATTT-TC-----AATTTCTGTTTTC---AAA
129 CAATTTCTCTTTTTAATTTCTGTTTTCAAAAAA
64756475 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTCTG-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* *
64756538 TTCAAAAAATCAACTCATATTGCGAGA-GAGAGTTGAGCCTCAGGTCACACGCCAGGTATTTTCA
66 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
* *
64756602 ATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAA
131 ATTTCTCTTTTT-AATTTCTG-TTTTCAAAAAA
* * * **
64756635 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTGTTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTC
* * * **
64756699 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACATTGAGGT
63 TG--TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-GCGAGGT
64756764 ATTTTTCAATTT
124 A-TTTTCAATTT
64756776 ATATTTTTCA
Statistics
Matches: 537, Mismatches: 24, Indels: 70
0.85 0.04 0.11
Matches are distributed among these distances:
142 4 0.01
143 29 0.05
144 56 0.10
146 27 0.05
147 12 0.02
149 4 0.01
150 2 0.00
151 4 0.01
153 1 0.00
155 43 0.08
156 82 0.15
157 52 0.10
158 84 0.16
159 17 0.03
160 37 0.07
162 10 0.02
163 12 0.02
166 3 0.01
167 24 0.04
168 19 0.04
169 5 0.01
170 10 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (161 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCGAGGTATTTTCA
ATTTCTCTTTTTAATTTCTGTTTTCAAAAAA
Found at i:64756496 original size:144 final size:141
Alignment explanation
Indices: 64756308--64756612 Score: 481
Period size: 144 Copynumber: 2.1 Consensus size: 141
64756298 TTCAATTTCT
*
64756308 TTTTTAATTTCTGTTTTCAAAAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCT-GG-CACG
1 TTTTCAATTTCTGTTTTC--AAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACG
*
64756371 CTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
64 CTGAGGTA-TTTCAATTTCTG--TTCAAAAAATCAACTCATATTGCGAGA-GAGAGTTGAGCCTC
64756436 AGATCACACGCCGAGGTA
125 AGATCACACGCC-AGGTA
64756454 TTTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGACACG
*
64756518 CTGAGGTATTTCAATTTCTGTTCAAAAAATCAACTCATATTGCGAGAGAGAGTTGAGCCTCAGGT
64 CTGAGGTATTTCAATTTCTGTTCAAAAAATCAACTCATATTGCGAGAGAGAGTTGAGCCTCAGAT
64756583 CACACGCCAGGTA
129 CACACGCCAGGTA
64756596 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
64756613 TCAATTTCTG
Statistics
Matches: 152, Mismatches: 3, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
142 22 0.14
143 31 0.20
144 56 0.37
146 31 0.20
147 12 0.08
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (141 bp):
TTTTCAATTTCTGTTTTCAAAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACGCT
GAGGTATTTCAATTTCTGTTCAAAAAATCAACTCATATTGCGAGAGAGAGTTGAGCCTCAGATCA
CACGCCAGGTA
Found at i:64756505 original size:74 final size:73
Alignment explanation
Indices: 64756308--64756612 Score: 432
Period size: 70 Copynumber: 4.2 Consensus size: 73
64756298 TTCAATTTCT
* *
64756308 TTTTTAATTTCTGTTTTCAAAAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCT--G-GCA
1 TTTTCAATTTCTGTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACA
*
64756369 CGCTGAGGTA
64 CGCCGAGGTA
64756379 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACA
64756444 CGCCGAGGTA
64 CGCCGAGGTA
*
64756454 TTTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACG
*
64756518 CTGAGGTA
66 CCGAGGTA
*
64756526 -TTTCAATTTCTG--TTCAAAAAATCAACTCATATTGCGAGA-GAGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-CACA
64756587 CGCC-AGGTA
64 CGCCGAGGTA
64756596 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
64756613 TCAATTTCTG
Statistics
Matches: 214, Mismatches: 8, Indels: 22
0.88 0.03 0.09
Matches are distributed among these distances:
69 25 0.12
70 58 0.27
71 47 0.22
72 13 0.06
73 2 0.01
74 40 0.19
75 29 0.14
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACG
CCGAGGTA
Found at i:64756615 original size:14 final size:14
Alignment explanation
Indices: 64756596--64756622 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64756586 ACGCCAGGTA
64756596 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
64756610 TTTTCAATTTCTG
1 TTTTCAATTTCTG
64756623 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:64756628 original size:14 final size:14
Alignment explanation
Indices: 64756597--64756630 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
64756587 CGCCAGGTAT
**
64756597 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
64756611 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
64756625 TTTCAA
1 TTTCAA
64756631 AAAAAATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:64756735 original size:77 final size:77
Alignment explanation
Indices: 64756610--64757235 Score: 362
Period size: 88 Copynumber: 7.8 Consensus size: 77
64756600 CAATTTCTGT
** *
64756610 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTC
* *
64756675 ACGCGCTGAGCTG
65 ACACGCTGAGCTA
* *
64756688 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCA
** *
64756753 CACATTGAGGTA
66 CACGCTGAGCTA
* * * *
64756765 TTTTTCAATTTATATTTTTCAAAAAAATCAACTC--ATTGCGAGATGTGAGTTGAGCCTT-GGTC
1 -TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTC
* *
64756827 ACATG-TCGAGGTA
65 ACACGCT-GAGCTA
** * * *
64756840 TTTTCAAAATCTGTTTTTTAGATTCTGTTTTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
64756905 GCCTTAGCTCACGTGCTGAGCTA
55 GCCTTAGCTCACACGCTGAGCTA
* *
64756928 TTTTCAATTTCTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
1 TTTTCAATTTC--TGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTT-
* * * *
64756993 ATTTCTGCGAGA-GTTGAGTTGA
60 A--GCT-C-ACACGCTGAGCT-A
* * * *
64757015 GTCTTTTAATTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TAGC
** *
64757077 TCACA-TATCGAGGTA
63 TCACACGCT-GAGCTA
*
64757092 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * *
64757156 AGCCTCAG--GACACGCCGAGGTA
54 AGCCTTAGCTCACACGCTGAGCTA
* * * * *
64757178 TTTTTAAATTTATATTTTTC--AAAAATCAACTCATATTGCAAGATGTGAGTTGAGCCTT
1 -TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
64757236 GGGTTCACAT
Statistics
Matches: 437, Mismatches: 64, Indels: 98
0.73 0.11 0.16
Matches are distributed among these distances:
74 51 0.12
75 20 0.05
76 23 0.05
77 56 0.13
78 55 0.13
79 9 0.02
80 28 0.06
82 4 0.01
83 5 0.01
84 31 0.07
85 20 0.05
86 16 0.04
87 43 0.10
88 58 0.13
89 11 0.03
90 7 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCA
CACGCTGAGCTA
Found at i:64757004 original size:30 final size:30
Alignment explanation
Indices: 64756968--64757028 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
64756958 CAACTCATAT
64756968 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
64756998 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
64757028 T
1 T
64757029 ATTTTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:64757142 original size:252 final size:240
Alignment explanation
Indices: 64756379--64757232 Score: 849
Period size: 252 Copynumber: 3.5 Consensus size: 240
64756369 CGCTGAGGTA
* * * *
64756379 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
1 TTTTCAAGTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC-
* * * *
64756444 CGCCGAGGTATTTTCAATTTC-T-GTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
65 GGCTGAGCTATTTTCAATTTCTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * *
64756505 GCCTCAGGA-CACGC--TGAGGTA--TTTCAA-TT-T-CTGTTCAAAAAATCAACTCATATTGCG
130 GCTTTA-GATCACACATTGAGGTATTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCG
* ** * **
64756562 AGAGAGAGTTGAGCCTCAGGTCACA-CGCCAGGTATTTTCAATTTCTG
194 AGAGTGAGTTGAGCCTCA-GTCACATATCGAGGTATTTTCAAAATCTG
* *
64756609 TTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 -TTTTCAAGTTCTG-CTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCT
* *
64756674 CACGCGCTGAGCTGTTTTCAATTTC-TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
62 CACG-GCTGAGCTATTTTCAATTTCTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
64756738 TTGAGCTTTAGATCACACATTGAGGTATTTTTCAATTTATATTTTTCAAAAAAATCAACTC--AT
126 TTGAGCTTTAGATCACACATTGAGGTATTTTTCAATTTATATTTTTC-AAAAAATCAACTCATAT
** *
64756801 TGCGAGATGTGAGTTGAGCCTTGGTCACATGTCGAGGTATTTTCAAAATCTG
190 TGCGAGA-GTGAGTTGAGCCTCAGTCACATATCGAGGTATTTTCAAAATCTG
** * * *
64756853 TTTTTTAGATTCTGTTTTC-AAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTTAGCTCAC
1 TTTTCAAG-TTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC
*
64756917 GTGCTGAGCTATTTTCAATTTCTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
65 G-GCTGAGCTATTTTCAATTTC-TTATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGT
* * * *
64756982 TGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTATTTTTC-AAAAATCA
127 TGAGC--TTTAGA--TC-AC-ACA-TTGAGGT-A-T-TTTTCAATTTATATTTTTCAAAAAATCA
*
64757044 ACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTG
182 ACTCATATTGCGAGA-GTGAGTTGAGCCT-CAGTCACATATCGAGGTATTTTCAAAATCTG
** * **
64757105 CTTTTCAAGTTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 -TTTTCAAGTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC
* * * * * *
64757169 -GCCGAGGTATTTTTAAATTT-ATATTTTTC--AAAAATCAACTCATATTGCAAGATGTGAGTTG
65 GGCTGAGCTA-TTTTCAATTTCTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
64757230 AGC
129 AGC
64757233 CTTGGGTTCA
Statistics
Matches: 528, Mismatches: 57, Indels: 61
0.82 0.09 0.09
Matches are distributed among these distances:
231 13 0.02
232 4 0.01
234 61 0.12
235 5 0.01
236 2 0.00
237 41 0.08
239 7 0.01
240 62 0.12
241 6 0.01
242 16 0.03
243 55 0.10
244 39 0.07
245 17 0.03
246 30 0.06
247 6 0.01
248 2 0.00
249 25 0.05
250 8 0.02
251 48 0.09
252 75 0.14
253 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (240 bp):
TTTTCAAGTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCACG
GCTGAGCTATTTTCAATTTCTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CTTTAGATCACACATTGAGGTATTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAG
AGTGAGTTGAGCCTCAGTCACATATCGAGGTATTTTCAAAATCTG
Found at i:64757987 original size:30 final size:29
Alignment explanation
Indices: 64757937--64758105 Score: 215
Period size: 30 Copynumber: 5.8 Consensus size: 29
64757927 ACTTTTCTCA
*
64757937 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAG-CACACCTTTTCCACCACCAACTCC
64757967 ACTAGCACACC-TTTCC-CCACCAACTCC
1 ACTAGCACACCTTTTCCACCACCAACTCC
64757994 ACTAGC-CACTCTTTTCCACCA-CAACTCC
1 ACTAGCACAC-CTTTTCCACCACCAACTCC
*
64758022 ACTAGCCACACCTTTCCCACCACCAACTCC
1 ACTAG-CACACCTTTTCCACCACCAACTCC
64758052 ACTAGC-CACTCTTTTTCCACCACCAACTCC
1 ACTAGCACAC-C-TTTTCCACCACCAACTCC
*
64758082 ACTAGCCACACCTTCT-CACCACCA
1 ACTAG-CACACCTTTTCCACCACCA
64758106 CTTGTACCTA
Statistics
Matches: 125, Mismatches: 4, Indels: 21
0.83 0.03 0.14
Matches are distributed among these distances:
26 3 0.02
27 18 0.14
28 25 0.20
29 29 0.23
30 45 0.36
31 2 0.02
32 3 0.02
ACGTcount: A:0.25, C:0.50, G:0.04, T:0.21
Consensus pattern (29 bp):
ACTAGCACACCTTTTCCACCACCAACTCC
Found at i:64758607 original size:23 final size:23
Alignment explanation
Indices: 64758580--64758623 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
64758570 ATTTTTTTGT
64758580 TATTATTATATT-TCTTAATATTA
1 TATTA-TATATTCTCTTAATATTA
*
64758603 TATTATATATTCTTTTAATAT
1 TATTATATATTCTCTTAATAT
64758624 ATTAGGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTATATATTCTCTTAATATTA
Found at i:64758624 original size:20 final size:20
Alignment explanation
Indices: 64758583--64758627 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
64758573 TTTTTGTTAT
*
64758583 TATTATATTTCTTAATATTA
1 TATTATATTTCTTAATAATA
*
64758603 TATTATATATTCTT-TTAATA
1 TATTATAT-TTCTTAATAATA
64758623 TATTA
1 TATTA
64758628 GGTATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATATTTCTTAATAATA
Found at i:64758684 original size:23 final size:23
Alignment explanation
Indices: 64758658--64758710 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
64758648 TTACGTAATA
64758658 TATATAT-TTTATACTATT-TTATT
1 TATATATCTTTA-A-TATTATTATT
64758681 TATATATCTTTAATATTATTATT
1 TATATATCTTTAATATTATTATT
64758704 TATATAT
1 TATATAT
64758711 ATATTTTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.14
23 20 0.71
24 4 0.14
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
TATATATCTTTAATATTATTATT
Found at i:64758700 original size:25 final size:23
Alignment explanation
Indices: 64758656--64758712 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
64758646 TATTACGTAA
*
64758656 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTA--TTATT
* *
64758681 TATATATCTTTAATATTATTATT
1 TATATATATTTAATACTATTATT
64758704 TATATATAT
1 TATATATAT
64758713 ATTTTCTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 13 0.46
25 15 0.54
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TATATATATTTAATACTATTATT
Found at i:64758728 original size:29 final size:27
Alignment explanation
Indices: 64758655--64758714 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
64758645 ATATTACGTA
*
64758655 ATATATATAT-TTT-ATACTA-T-TTT
1 ATATATATATCTTTAATATTATTATTT
*
64758678 ATTTATATATCTTTAATATTATTATTT
1 ATATATATATCTTTAATATTATTATTT
64758705 ATATATATAT
1 ATATATATAT
64758715 TTTCTACATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 9 0.30
24 3 0.10
25 5 0.17
26 1 0.03
27 12 0.40
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (27 bp):
ATATATATATCTTTAATATTATTATTT
Found at i:64758773 original size:25 final size:24
Alignment explanation
Indices: 64758745--64758812 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 24
64758735 TTATATCTTA
64758745 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTAT-TATTTTTAAC
*
64758770 ACTATATTATGTA-TATTTTTAAT
1 ACTATATTATGTATTATTTTTAAC
*
64758793 A-T-TATCATGTATTTATTTTT
1 ACTATATTATGTA-TTATTTTT
64758813 TATATATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.21
22 1 0.03
23 17 0.44
25 13 0.33
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
ACTATATTATGTATTATTTTTAAC
Found at i:64758786 original size:23 final size:24
Alignment explanation
Indices: 64758745--64758791 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
64758735 TTATATCTTA
64758745 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTA-GTATTTTTAAC
64758770 ACTATATTATGTA-TATTTTTAA
1 ACTATATTATGTAGTATTTTTAA
64758792 TATTATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
25 13 0.59
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.53
Consensus pattern (24 bp):
ACTATATTATGTAGTATTTTTAAC
Found at i:64758802 original size:21 final size:23
Alignment explanation
Indices: 64758745--64758804 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
64758735 TTATATCTTA
*
64758745 ACTATATTATGTATGTATTTTTAAC
1 ACTATATCATGTA--TATTTTTAAC
* *
64758770 ACTATATTATGTATATTTTTAAT
1 ACTATATCATGTATATTTTTAAC
64758793 A-T-TATCATGTAT
1 ACTATATCATGTAT
64758805 TTATTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.27
22 1 0.03
23 10 0.30
25 13 0.39
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (23 bp):
ACTATATCATGTATATTTTTAAC
Found at i:64766188 original size:93 final size:93
Alignment explanation
Indices: 64766076--64766247 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64766066 CGCCCATAAG
* *
64766076 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64766141 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
64766169 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64766234 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
64766248 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:64766244 original size:46 final size:46
Alignment explanation
Indices: 64766069--64766244 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64766059 TGTAACCCGC
* * *
64766069 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
64766115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
64766165 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
64766208 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
64766245 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64768166 original size:47 final size:47
Alignment explanation
Indices: 64768093--64768189 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
64768083 GCCATCCCAA
*
64768093 ATTAATATAGCAATGAGATTAAAATTAATTTTAAAATTTATATTCAG
1 ATTAATATAACAATGAGATTAAAATTAATTTTAAAATTTATATTCAG
*
64768140 ATTAATATAACAATGAGATTAGAATTAATTTTAAAATTTATATTCAG
1 ATTAATATAACAATGAGATTAAAATTAATTTTAAAATTTATATTCAG
64768187 ATT
1 ATT
64768190 TAAACAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.41
Consensus pattern (47 bp):
ATTAATATAACAATGAGATTAAAATTAATTTTAAAATTTATATTCAG
Found at i:64768168 original size:23 final size:23
Alignment explanation
Indices: 64768092--64768168 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
64768082 TGCCATCCCA
* *
64768092 AATTAATATAGCAATGAGATTAA
1 AATTAATATAACAATGAGATTAG
* * *
64768115 AATTAATTTTAA-AATTTATATTCAG
1 AATTAA-TATAACAA-TGAGATT-AG
64768140 -ATTAATATAACAATGAGATTAG
1 AATTAATATAACAATGAGATTAG
64768162 AATTAAT
1 AATTAAT
64768169 TTTAAAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 2 0.05
23 23 0.56
24 15 0.37
25 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (23 bp):
AATTAATATAACAATGAGATTAG
Found at i:64768216 original size:47 final size:44
Alignment explanation
Indices: 64768113--64768216 Score: 118
Period size: 47 Copynumber: 2.2 Consensus size: 44
64768103 CAATGAGATT
* * *
64768113 AAAATTAATTTTAAAATTTATATTCAGATTAATATAACAATGAG
1 AAAATTAATTTTAAAATTTATATTCAGATTAACAAAAAAATGAG
64768157 ATTAGAATTAATTTTAAAATTTATATTCAGATTTAAACAAAAAAGATGAG
1 A--A-AATTAATTTTAAAATTTATATTCAGA-TT-AACAAAAAA-ATGAG
*
64768207 AAAAATAATT
1 AAAATTAATT
64768217 CCCCAATAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
44 1 0.02
46 1 0.02
47 33 0.66
48 3 0.06
49 6 0.12
50 6 0.12
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (44 bp):
AAAATTAATTTTAAAATTTATATTCAGATTAACAAAAAAATGAG
Found at i:64768747 original size:20 final size:20
Alignment explanation
Indices: 64768705--64768761 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
64768695 AAATGCAGAA
* *
64768705 TTAAGTCTCGAGACTT-GACC
1 TTAAGTCTCAAGACTTAG-TC
* * *
64768725 TTAGGTGTCAATACTTAGTC
1 TTAAGTCTCAAGACTTAGTC
64768745 TTAAGTCTCAAGACTTA
1 TTAAGTCTCAAGACTTA
64768762 AGCCTAAGTT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (20 bp):
TTAAGTCTCAAGACTTAGTC
Found at i:64772012 original size:21 final size:21
Alignment explanation
Indices: 64771988--64772058 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
64771978 CCACACGAGA
64771988 GTGTGCCTCAGTCACACTGGT
1 GTGTGCCTCAGTCACACTGGT
** * *
64772009 GTGTGCCTCTTTTCACACTAGC
1 GTGTGCCTC-AGTCACACTGGT
*
64772031 GTGTGCCTCAGCCACAC-GGCT
1 GTGTGCCTCAGTCACACTGG-T
64772052 GTGTGCC
1 GTGTGCC
64772059 CCTCTTCACA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.03
21 21 0.54
22 17 0.44
ACGTcount: A:0.13, C:0.32, G:0.27, T:0.28
Consensus pattern (21 bp):
GTGTGCCTCAGTCACACTGGT
Found at i:64772040 original size:43 final size:43
Alignment explanation
Indices: 64771979--64772068 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
64771969 GTCCCTGGTC
* * *
64771979 CACACGAGAGTGTGCCTCAGTCACACTGG-TGTGTGCCTCTTTT
1 CACACGAGAGTGTGCCTCAGCCACAC-GGCTGTGTGCCCCTCTT
* *
64772022 CACACTAGCGTGTGCCTCAGCCACACGGCTGTGTGCCCCTCTT
1 CACACGAGAGTGTGCCTCAGCCACACGGCTGTGTGCCCCTCTT
64772065 CACA
1 CACA
64772069 TGGGCGTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
42 2 0.05
43 39 0.95
ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26
Consensus pattern (43 bp):
CACACGAGAGTGTGCCTCAGCCACACGGCTGTGTGCCCCTCTT
Found at i:64781741 original size:19 final size:19
Alignment explanation
Indices: 64781719--64781777 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
64781709 TAGAATAGAA
64781719 TAACTTATTTATTATAAAG
1 TAACTTATTTATTATAAAG
* *
64781738 TAAC-T-CTGA--ATAGAA-
1 TAACTTATTTATTATA-AAG
64781753 TAACTTATTTATTATAAAG
1 TAACTTATTTATTATAAAG
64781772 TAACTT
1 TAACTT
64781778 TGACGAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
15 7 0.23
16 3 0.10
17 4 0.13
18 3 0.10
19 13 0.43
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (19 bp):
TAACTTATTTATTATAAAG
Found at i:64781749 original size:34 final size:34
Alignment explanation
Indices: 64781711--64781776 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
64781701 AACTAACTTA
64781711 GAATAGAATAACTTATTTATTATAAAGTAACTCT
1 GAATAGAATAACTTATTTATTATAAAGTAACTCT
64781745 GAATAGAATAACTTATTTATTATAAAGTAACT
1 GAATAGAATAACTTATTTATTATAAAGTAACT
64781777 TTGACGAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.38
Consensus pattern (34 bp):
GAATAGAATAACTTATTTATTATAAAGTAACTCT
Found at i:64781787 original size:34 final size:34
Alignment explanation
Indices: 64781715--64781787 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
64781705 AACTTAGAAT
*
64781715 AGAATAACTTATTTATTATAAAGTAACTCTGAAT
1 AGAATAACTTATTTATTATAAAGTAACTCTGAAG
* *
64781749 AGAATAACTTATTTATTATAAAGTAACTTTGACG
1 AGAATAACTTATTTATTATAAAGTAACTCTGAAG
64781783 AGAAT
1 AGAAT
64781788 GACATTATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (34 bp):
AGAATAACTTATTTATTATAAAGTAACTCTGAAG
Found at i:64782064 original size:35 final size:35
Alignment explanation
Indices: 64782014--64782417 Score: 319
Period size: 35 Copynumber: 11.2 Consensus size: 35
64782004 AGGCTGGCCT
* *
64782014 TTAAAAAATGTTGAGATAGACTCGTCTAAAGCAACC
1 TTAAAAAA-GTTGGGATAGACTCGTCTAAGGCAACC
* * *
64782050 TTAAAAAAGCTGAGATAGAC-CTGTCTAAGACAACC
1 TTAAAAAAGTTGGGATAGACTC-GTCTAAGGCAACC
* * * * * *
64782085 CTAAAAAGGTTGGGAAAAACCTTGTCTAAGGCATCC
1 TTAAAAAAGTTGGGATAGA-CTCGTCTAAGGCAACC
* * * * *
64782121 TTTAAAAAAGGTTGGAATAAAATCGTCTAAAGCAACT
1 -TTAAAAAA-GTTGGGATAGACTCGTCTAAGGCAACC
*
64782158 TTAAAAAAGTTGGGATAGACCCGTCTAAGGCAACC
1 TTAAAAAAGTTGGGATAGACTCGTCTAAGGCAACC
* * * * * *
64782193 TTAAAAAGGTTAGAATAGTCATTGTCTAAGGCAACAT
1 TTAAAAAAGTTGGGATAGAC-TCGTCTAAGGCAAC-C
* *
64782230 TTAAAAAACATTGGGATAGACTCGTCTAAAGCAACC
1 TTAAAAAA-GTTGGGATAGACTCGTCTAAGGCAACC
* * *
64782266 TTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACC
1 TTAAAAAAGTTGGGATAGA-CTCGTCTAAGGCAACC
**
64782302 TTTAAAAAATGTTGGGATAGATCTTATCTAAGGCAACC
1 -TTAAAAAA-GTTGGGATAGA-CTCGTCTAAGGCAACC
* * *
64782340 TTTAAAAAGGTTGGGATAAAAC-CATCTAAGGCAACCC
1 -TTAAAAAAGTTGGGAT-AGACTCGTCTAAGGCAA-CC
* * * *
64782377 TT-AAAAGGTTGGGATAGATTCGTCCAAGACAACC
1 TTAAAAAAGTTGGGATAGACTCGTCTAAGGCAACC
64782411 TTAAAAA
1 TTAAAAA
64782418 GGTTAAGATA
Statistics
Matches: 294, Mismatches: 59, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
34 7 0.02
35 107 0.36
36 74 0.25
37 54 0.18
38 52 0.18
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (35 bp):
TTAAAAAAGTTGGGATAGACTCGTCTAAGGCAACC
Found at i:64782163 original size:73 final size:73
Alignment explanation
Indices: 64782011--64782421 Score: 340
Period size: 73 Copynumber: 5.7 Consensus size: 73
64782001 TCAAGGCTGG
* * * * * **
64782011 CCTTTAAAAAATGTTGAGATAGA-CTCGTCTAAAGCAACCTTAAAAAAGCT-GAGATAGACCT-G
1 CCTTT-AAAAAGGTTGGGATAGACCTCGTCTAAGGCAACCTTAAAAAGGTTGGA-ATAGAAATCG
*
64782073 TCTAAGACAA
64 TCTAAGGCAA
* * * * *
64782083 CC-CTAAAAAGGTTGGGAAAAACCTTGTCTAAGGCATCCTTTAAAAAAGGTTGGAATA-AAATCG
1 CCTTTAAAAAGGTTGGGATAGACCTCGTCTAAGGCAACC-TT-AAAAAGGTTGGAATAGAAATCG
*
64782146 TCTAAAGCAA
64 TCTAAGGCAA
* * ** *
64782156 -CTTTAAAAAAGTTGGGATAGACC-CGTCTAAGGCAACCTTAAAAAGGTTAGAATAGTCATTGTC
1 CCTTTAAAAAGGTTGGGATAGACCTCGTCTAAGGCAACCTTAAAAAGGTTGGAATAGAAATCGTC
64782219 TAAGGCAA
66 TAAGGCAA
* ** * * ** *
64782227 CATTTAAAAAACATTGGGATAGA-CTCGTCTAAAGCAACCTTAAAAAGGTTGGTATAGACCTTGT
1 CCTTT-AAAAAGGTTGGGATAGACCTCGTCTAAGGCAACCTTAAAAAGGTTGGAATAGAAATCGT
64782291 CTAAGGCAA
65 CTAAGGCAA
* * ** * * *
64782300 CCTTTAAAAAATGTTGGGATAGATCTTATCTAAGGCAACCTTTAAAAAGGTTGGGATA-AAACCA
1 CCTTT-AAAAAGGTTGGGATAGACCTCGTCTAAGGCAACC-TTAAAAAGGTTGGAATAGAAATCG
64782364 TCTAAGGCAA
64 TCTAAGGCAA
* * * *
64782374 CCCTT-AAAAGGTTGGGATAGA-TTCGTCCAAGACAACCTTAAAAAGGTT
1 CCTTTAAAAAGGTTGGGATAGACCTCGTCTAAGGCAACCTTAAAAAGGTT
64782422 AAGATAGGCA
Statistics
Matches: 275, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
70 38 0.14
71 39 0.14
72 38 0.14
73 114 0.41
74 30 0.11
75 16 0.06
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (73 bp):
CCTTTAAAAAGGTTGGGATAGACCTCGTCTAAGGCAACCTTAAAAAGGTTGGAATAGAAATCGTC
TAAGGCAA
Found at i:64782175 original size:108 final size:108
Alignment explanation
Indices: 64782011--64782421 Score: 418
Period size: 108 Copynumber: 3.8 Consensus size: 108
64782001 TCAAGGCTGG
* * * * *
64782011 CCTTTAAAAAATGTT-GAGATAGACTCGTCTAAAGCAACCTTAAAAAAGCTGAGATAGACCTGTC
1 CCTTTAAAAAAGGTTGGA-ATAAAATCGTCTAAAGCAACCTTAAAAAAGTTGGGATAGACCTGTC
* * *
64782075 TAAGACAACCCTAAAAAGGTTGGGAAAAACCTTGTCTAAGGCAT
65 TAAGACAACCTTAAAAAGGTTGGGAAAGACCTTGTCTAAGGCAA
* *
64782119 CCTTTAAAAAAGGTTGGAATAAAATCGTCTAAAGCAACTTTAAAAAAGTTGGGATAGACCCGTCT
1 CCTTTAAAAAAGGTTGGAATAAAATCGTCTAAAGCAACCTTAAAAAAGTTGGGATAGACCTGTCT
* * * *
64782184 AAGGCAACCTTAAAAAGGTT-AGAATAGTCATTGTCTAAGGCAA
66 AAGACAACCTTAAAAAGGTTGGGAA-AGACCTTGTCTAAGGCAA
* ** * * * * *
64782227 CATTTAAAAAACATTGGGATAGACTCGTCTAAAGCAACCTTAAAAAGGTTGGTATAGACCTTGTC
1 CCTTTAAAAAAGGTTGGAATAAAATCGTCTAAAGCAACCTTAAAAAAGTTGGGATAGACC-TGTC
* * * * *
64782292 TAAGGCAACCTTTAAAAAATGTTGGGATAGATCTTATCTAAGGCAA
65 TAAGACAACC-TT-AAAAAGGTTGGGAAAGACCTTGTCTAAGGCAA
* * * * * *
64782338 CCTTT-AAAAAGGTTGGGATAAAACCATCTAAGGCAACCCTT-AAAAGGTTGGGATAGA-TTCGT
1 CCTTTAAAAAAGGTTGGAATAAAATCGTCTAAAGCAA-CCTTAAAAAAGTTGGGATAGACCT-GT
*
64782400 CCAAGACAACCTTAAAAAGGTT
64 CTAAGACAACCTTAAAAAGGTT
64782422 AAGATAGGCA
Statistics
Matches: 251, Mismatches: 44, Indels: 17
0.80 0.14 0.05
Matches are distributed among these distances:
107 11 0.04
108 141 0.56
109 26 0.10
110 41 0.16
111 30 0.12
112 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (108 bp):
CCTTTAAAAAAGGTTGGAATAAAATCGTCTAAAGCAACCTTAAAAAAGTTGGGATAGACCTGTCT
AAGACAACCTTAAAAAGGTTGGGAAAGACCTTGTCTAAGGCAA
Found at i:64782833 original size:15 final size:14
Alignment explanation
Indices: 64782813--64782849 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
64782803 TTTTGCTTCT
64782813 TCTTCCTTCACATCA
1 TCTTCCTTC-CATCA
64782828 TCTTCCTT-CATCA
1 TCTTCCTTCCATCA
64782841 TCTTCCTTC
1 TCTTCCTTC
64782850 TTCTTCCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.62
15 8 0.38
ACGTcount: A:0.14, C:0.41, G:0.00, T:0.46
Consensus pattern (14 bp):
TCTTCCTTCCATCA
Found at i:64786299 original size:32 final size:32
Alignment explanation
Indices: 64786254--64786318 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
64786244 CAAGATGATG
*
64786254 AGATAGATGTAAAGGCCAAGGGCAAATATAAA
1 AGATAGATATAAAGGCCAAGGGCAAATATAAA
64786286 AGATAGATATAAAGGCCAAGGGCAAATATAAA
1 AGATAGATATAAAGGCCAAGGGCAAATATAAA
64786318 A
1 A
64786319 CAAATTGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.52, C:0.09, G:0.23, T:0.15
Consensus pattern (32 bp):
AGATAGATATAAAGGCCAAGGGCAAATATAAA
Found at i:64786926 original size:34 final size:32
Alignment explanation
Indices: 64786896--64786956 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
64786886 AGAATATTGC
64786896 TTATAA-ATCTCAATGACTACATGTAAAATAT
1 TTATAACATCTCAATGACTACATGTAAAATAT
* *
64786927 TTATAACGTTTCAATGACTACATGTAAAAT
1 TTATAACATCTCAATGACTACATGTAAAAT
64786957 GTTATAAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (32 bp):
TTATAACATCTCAATGACTACATGTAAAATAT
Found at i:64789772 original size:32 final size:32
Alignment explanation
Indices: 64789722--64789787 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
64789712 AAACGATTTC
*
64789722 CATGAATCTGAAGTTGATGTTTCTTTGGATGA
1 CATGAATCTGAAGCTGATGTTTCTTTGGATGA
*
64789754 CATGGATCTGAAGCTGATGTTTCTTTGGATGA
1 CATGAATCTGAAGCTGATGTTTCTTTGGATGA
64789786 CA
1 CA
64789788 CAACCGCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (32 bp):
CATGAATCTGAAGCTGATGTTTCTTTGGATGA
Found at i:64790591 original size:17 final size:17
Alignment explanation
Indices: 64790571--64790603 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
64790561 ATTAAGAATG
64790571 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
64790588 TTATTAAATTATATTT
1 TTATTAAATTATATTT
64790604 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:64790617 original size:55 final size:57
Alignment explanation
Indices: 64790548--64790681 Score: 161
Period size: 58 Copynumber: 2.4 Consensus size: 57
64790538 TTAATTCATA
* *
64790548 TAATAATAATTATATTAAGAATGTTATTAAA-T-TATA-T-TTTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATGATTAAACTATATATTATTTTTATTAAATTAT-TT
* *
64790603 TAATAATAATTATATTAAAATATGGTTAAACTATTTATTATTTTTATTAAATTATTT
1 TAATAATAATTATATTAAAATATGATTAAACTATATATTATTTTTATTAAATTATTT
64790660 TCAATAATAATCT-TATTAAAAT
1 T-AATAATAAT-TATATTAAAAT
64790682 TTAATAACTA
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
54 9 0.13
55 19 0.28
56 3 0.04
57 4 0.06
58 33 0.48
59 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (57 bp):
TAATAATAATTATATTAAAATATGATTAAACTATATATTATTTTTATTAAATTATTT
Found at i:64798962 original size:12 final size:12
Alignment explanation
Indices: 64798941--64798970 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
64798931 AACTCTTATA
*
64798941 CAAAGAGTTGGT
1 CAAAGCGTTGGT
64798953 CAAAGCGTTGGT
1 CAAAGCGTTGGT
64798965 CAAAGC
1 CAAAGC
64798971 ACTTAGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (12 bp):
CAAAGCGTTGGT
Found at i:64799041 original size:128 final size:132
Alignment explanation
Indices: 64798864--64799226 Score: 450
Period size: 141 Copynumber: 2.7 Consensus size: 132
64798854 AACACTTAGG
* * *
64798864 AAAGTGTCGGTATAGTGTTGGACAAAGCCGACTCTTATTTAAACATTGCCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* * *
64798929 CCAACTCTTATACAAAGAGTTGGTCAAAGCGT-TGGTC-A-AAG-CACTTAGG-AAAGTGTCGGC
66 CCAACCCTTATACAAAGAGTTGGTCAAAGCGTAT-GTCGACAAGCCACTTAGGAAAAATGTCAGC
64798989 CCA
130 CCA
* *
64798992 AAAGTGTCGGCATAGTATTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
*
64799057 TCAACCCTTATACAAAGAGTTGG-CTAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAA
66 CCAACCCTTATACAAAGAGTTGGTC-AAAGCGTATGTCGACAAG-------C--CACTTAGGAAA
64799121 AATGTCAGCCCA
121 AATGTCAGCCCA
* * * * *
64799133 AAAGTGTCAGCATAGTGTTAGACAAAGTCGACTCTTCTTTAAGTGTTGCCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
*
64799198 CCAACCCTTATACAAAGAGTTAGTCAAAG
66 CCAACCCTTATACAAAGAGTTGGTCAAAG
64799227 TCTATGTTAG
Statistics
Matches: 201, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
127 1 0.00
128 91 0.45
129 2 0.01
130 3 0.01
140 8 0.04
141 95 0.47
142 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (132 bp):
AAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
CCAACCCTTATACAAAGAGTTGGTCAAAGCGTATGTCGACAAGCCACTTAGGAAAAATGTCAGCC
CA
Found at i:64799241 original size:141 final size:141
Alignment explanation
Indices: 64798970--64799261 Score: 412
Period size: 141 Copynumber: 2.1 Consensus size: 141
64798960 TTGGTCAAAG
* * * *
64798970 CACTTAGG-AAAGTGTCGGCCCAAAAGTGTCGGCATAGTATTGGACAAAACCGACTCTTATTTAA
1 CACTTAGGAAAAATGTCAGCCCAAAAGTGTCAGCATAGTATTAGACAAAACCGACTCTTATTTAA
* *
64799034 GCGTTGCCTTAGGCATGCATATCTCAACCCTTATACAAAGAGTTGGCTAAAGCGTATGTCGACAA
66 GCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTGGCTAAAGCGTATGTAGACAA
64799099 GTCTATCCCAA
131 GTCTATCCCAA
* ** *
64799110 CACTTAGGAAAAATGTCAGCCCAAAAGTGTCAGCATAGTGTTAGACAAAGTCGACTCTTCTTTAA
1 CACTTAGGAAAAATGTCAGCCCAAAAGTGTCAGCATAGTATTAGACAAAACCGACTCTTATTTAA
* *
64799175 GTGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTAG-TCAAAGTC-TATGTTAG-
66 GCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTGGCT-AAAG-CGTATG-TAGA
64799237 CAAGTCTATCCCAA
128 CAAGTCTATCCCAA
*
64799251 CACTTAAGAAA
1 CACTTAGGAAA
64799262 GTGTCGGTCT
Statistics
Matches: 135, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
140 9 0.07
141 123 0.91
142 3 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (141 bp):
CACTTAGGAAAAATGTCAGCCCAAAAGTGTCAGCATAGTATTAGACAAAACCGACTCTTATTTAA
GCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTGGCTAAAGCGTATGTAGACAA
GTCTATCCCAA
Found at i:64803869 original size:31 final size:31
Alignment explanation
Indices: 64803834--64803893 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
64803824 ACCATTTTCA
64803834 GTTACAAACGTAACAGAGTTATCATTTTTTT
1 GTTACAAACGTAACAGAGTTATCATTTTTTT
* * * *
64803865 GTTACATACTTAACGGAGTTGTCATTTTT
1 GTTACAAACGTAACAGAGTTATCATTTTT
64803894 CATCCCCCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (31 bp):
GTTACAAACGTAACAGAGTTATCATTTTTTT
Found at i:64804724 original size:11 final size:12
Alignment explanation
Indices: 64804700--64804726 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64804690 TTTATTTGAG
64804700 TTTAATTTATTT
1 TTTAATTTATTT
64804712 TTTAATTTATTT
1 TTTAATTTATTT
64804724 TTT
1 TTT
64804727 CTTTCCCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTAATTTATTT
Found at i:64814649 original size:67 final size:66
Alignment explanation
Indices: 64814507--64814655 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 66
64814497 TAGTACCACC
* * * *
64814507 CATGTGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCA
1 CATGTGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCA
64814571 CA
65 CA
* *
64814573 CATGCGACCTAGCTACATTTATCTCTCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTA
1 CATGTGACCTAGCTACATTTA--TCT-CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAA
64814635 TCACA
62 TCACA
64814640 CATGTGACCTAGCTAC
1 CATGTGACCTAGCTAC
64814656 TACATAGTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
66 13 0.18
67 27 0.38
69 5 0.07
70 26 0.37
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (66 bp):
CATGTGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCAC
A
Found at i:64826207 original size:40 final size:40
Alignment explanation
Indices: 64826067--64826247 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
64826057 TAACTCATTC
* *
64826067 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
64826107 AATGCCTTCGGGACTTAACCCGGAATT-AT--CTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
64826144 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
64826184 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
64826225 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64826248 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
37 33 0.28
38 3 0.03
39 7 0.06
40 66 0.55
41 11 0.09
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:64826207 original size:77 final size:79
Alignment explanation
Indices: 64826070--64826247 Score: 206
Period size: 77 Copynumber: 2.3 Consensus size: 79
64826060 CTCATTCAAT
* * *
64826070 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-AT-
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
*
64826133 -TA-TCTCGCACAAA
66 GTACT-TAGCACAAA
**
64826146 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
64826209 ATAGTCACTTAGCACAAA
63 ATAGT-ACTTAGCACAAA
*
64826227 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
64826248 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
76 7 0.08
77 47 0.54
78 2 0.02
80 21 0.24
81 9 0.10
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTACTTAGCACAAA
Found at i:64827835 original size:39 final size:39
Alignment explanation
Indices: 64827791--64828017 Score: 289
Period size: 39 Copynumber: 5.8 Consensus size: 39
64827781 ATGACACATT
64827791 TAATCACATAACATTTAAGCATATATCACAATACTCATA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* * * *
64827830 TAATCAAATAACGTTTAAGCATACATCACAATACTCGTA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* * * *
64827869 TAATCACATATCATTTAAGAATTTATCATAATA-TACATA
1 TAATCACATAACATTTAAGCATATATCACAATACT-CATA
* *
64827908 TAATCTCATAACATTTAAGCATATATCACAATACTCGTA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* *
64827947 TAATCACTTAAC-TTTCAAGCATATATTACAATA-TACATA
1 TAATCACATAACATTT-AAGCATATATCACAATACT-CATA
*
64827986 TAATCTCATAACATTTAAGCATATATCACAAT
1 TAATCACATAACATTTAAGCATATATCACAAT
64828018 GATCAAAACA
Statistics
Matches: 158, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 5 0.03
39 149 0.94
40 4 0.03
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (39 bp):
TAATCACATAACATTTAAGCATATATCACAATACTCATA
Found at i:64827925 original size:78 final size:78
Alignment explanation
Indices: 64827791--64828017 Score: 332
Period size: 78 Copynumber: 2.9 Consensus size: 78
64827781 ATGACACATT
** * *
64827791 TAATCACATAACATTTAAGCATATATCACAATACT-CATATAATCAAATAACGTTTAAGCATACA
1 TAATCACATAACATTTAAGCATATATCACAATA-TACATATAATCTCATAACATTTAAGCATATA
64827855 TCACAATACTCGTA
65 TCACAATACTCGTA
* * * *
64827869 TAATCACATATCATTTAAGAATTTATCATAATATACATATAATCTCATAACATTTAAGCATATAT
1 TAATCACATAACATTTAAGCATATATCACAATATACATATAATCTCATAACATTTAAGCATATAT
64827934 CACAATACTCGTA
66 CACAATACTCGTA
* *
64827947 TAATCACTTAAC-TTTCAAGCATATATTACAATATACATATAATCTCATAACATTTAAGCATATA
1 TAATCACATAACATTT-AAGCATATATCACAATATACATATAATCTCATAACATTTAAGCATATA
64828011 TCACAAT
65 TCACAAT
64828018 GATCAAAACA
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
77 4 0.03
78 129 0.97
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (78 bp):
TAATCACATAACATTTAAGCATATATCACAATATACATATAATCTCATAACATTTAAGCATATAT
CACAATACTCGTA
Found at i:64828746 original size:13 final size:13
Alignment explanation
Indices: 64828728--64828753 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64828718 TTTCTCCGAA
64828728 AAGCCAAAAGCTC
1 AAGCCAAAAGCTC
64828741 AAGCCAAAAGCTC
1 AAGCCAAAAGCTC
64828754 TAACTATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (13 bp):
AAGCCAAAAGCTC
Found at i:64830108 original size:18 final size:18
Alignment explanation
Indices: 64830068--64830109 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
64830058 ATTACTGTAG
*
64830068 CAGTAAATAGTACAGTAA
1 CAGTAAATAGTACAGCAA
64830086 CAGTAAATAGTACAGCAA
1 CAGTAAATAGTACAGCAA
*
64830104 TAGTAA
1 CAGTAA
64830110 TCAGTGCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21
Consensus pattern (18 bp):
CAGTAAATAGTACAGCAA
Found at i:64830476 original size:27 final size:27
Alignment explanation
Indices: 64830441--64830548 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
64830431 ACATAGGGGT
* * *
64830441 AAAATAGTCATCTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
*
64830468 AAAACAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
* *
64830495 AAAATAGTCATTTTACC-TCATAAGGGA
1 AAAACAGTCATTTTACCAT-ATAAGGGC
* *
64830522 AAAACAGTAATTTTACCATGT-AGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
64830548 A
1 A
64830549 TTTTAGTCAT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.07
27 62 0.91
28 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATATAAGGGC
Found at i:64830499 original size:54 final size:54
Alignment explanation
Indices: 64830430--64830539 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
64830420 AAACATACAT
* * * *
64830430 CACATAGGGGTAAAATAGTCATCTTACCAT-AAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATCTTACC-TCAAAAGGGAAAAACAGTAATTTTAC
* *
64830484 CACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATCTTACCTCAAAAGGGAAAAACAGTAATTTTAC
64830538 CA
1 CA
64830540 TGTAGGGCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
53 1 0.02
54 48 0.98
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (54 bp):
CACATAAGGGCAAAATAGTCATCTTACCTCAAAAGGGAAAAACAGTAATTTTAC
Found at i:64830705 original size:18 final size:17
Alignment explanation
Indices: 64830679--64830712 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64830669 TATATTGCAG
64830679 GCCCATGTGGGCCTACAC
1 GCCCATGT-GGCCTACAC
*
64830697 GCCCGTGTGGCCTACA
1 GCCCATGTGGCCTACA
64830713 AAGCCCAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.38, G:0.29, T:0.18
Consensus pattern (17 bp):
GCCCATGTGGCCTACAC
Found at i:64833843 original size:16 final size:16
Alignment explanation
Indices: 64833822--64833862 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
64833812 AGTAGATCGG
64833822 CAAAAAGCCGAAATGC
1 CAAAAAGCCGAAATGC
*
64833838 CAAAAAGTCGAAATGC
1 CAAAAAGCCGAAATGC
64833854 CAAAAAGCC
1 CAAAAAGCC
64833863 AAAAGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.24, G:0.17, T:0.07
Consensus pattern (16 bp):
CAAAAAGCCGAAATGC
Found at i:64834112 original size:29 final size:29
Alignment explanation
Indices: 64834079--64834155 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
64834069 TGAGCATGAC
*
64834079 TATAAATGTGAATTGGGCCTGATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
* * * *
64834108 TATAAATATGATTTTGGCTTAATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGGGCCA
64834137 TATAAATGTG-ATTGGGCCT
1 TATAAATGTGAATTGGGCCT
64834156 TGTAGGTCAT
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 6 0.15
29 33 0.85
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (29 bp):
TATAAATGTGAATTGGGCCTAATGGGCCA
Found at i:64836860 original size:35 final size:35
Alignment explanation
Indices: 64836814--64836884 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
64836804 TCTTCACTAC
64836814 GAATCAAATTTCTCATTGTACAGAATTCAAAATAT
1 GAATCAAATTTCTCATTGTACAGAATTCAAAATAT
64836849 GAATCAAATTTCTCATTGTACAGAATTCAAAATAT
1 GAATCAAATTTCTCATTGTACAGAATTCAAAATAT
64836884 G
1 G
64836885 TTCTCGTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (35 bp):
GAATCAAATTTCTCATTGTACAGAATTCAAAATAT
Found at i:64837992 original size:45 final size:45
Alignment explanation
Indices: 64837908--64838130 Score: 351
Period size: 45 Copynumber: 5.0 Consensus size: 45
64837898 CGATATCATT
* * *
64837908 TCACCGGCATTACA-CCTGCTAGGCTCGAAA-GCCTGAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
64837952 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
64837997 TCACCGGCATTATAGCCTGCTGGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
64838042 TCACCGGCATTATAGCCTGCTGGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
64838087 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
64838131 TATAGTGTAT
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
44 15 0.09
45 152 0.91
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:64840395 original size:27 final size:26
Alignment explanation
Indices: 64840362--64840484 Score: 120
Period size: 27 Copynumber: 4.6 Consensus size: 26
64840352 ATGTAGGGGT
* * *
64840362 AAAACAGTCGTCTTACCAAAAGAGGGC
1 AAAACAGTCATTTTACCAATA-AGGGC
64840389 AAAACAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCA-ATAAGGGC
* *
64840416 AACACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACC-AATAAGGGC
* *
64840443 AAAACAGTCATTTTATCATGTAAGGGC
1 AAAACAGTCATTTTACCA-ATAAGGGC
***
64840470 ATTTCAGTCATTTTA
1 AAAACAGTCATTTTA
64840485 TCCATTAGGG
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 79 0.98
28 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (26 bp):
AAAACAGTCATTTTACCAATAAGGGC
Found at i:64840432 original size:54 final size:54
Alignment explanation
Indices: 64840365--64840484 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 54
64840355 TAGGGGTAAA
* *
64840365 ACAGTCGTCTTACC-AAAAGAGGGCAAAACAGTCATTTTACCACATAAGGGCAAC
1 ACAGTCATTTTACCTAAAA-AGGGCAAAACAGTCATTTTACCACATAAGGGCAAC
* * * ** **
64840419 ACAGTCATTTTACCTCATAAGGGCAAAACAGTCATTTTATCATGTAAGGGCATT
1 ACAGTCATTTTACCTAAAAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAC
*
64840473 TCAGTCATTTTA
1 ACAGTCATTTTA
64840485 TCCATTAGGG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 53 0.96
55 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (54 bp):
ACAGTCATTTTACCTAAAAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAC
Found at i:64845331 original size:241 final size:241
Alignment explanation
Indices: 64844895--64845614 Score: 1239
Period size: 241 Copynumber: 3.0 Consensus size: 241
64844885 ATTTAGACTC
* * *
64844895 ATGAGCTTCAAAATTCCAAACACACAACAATCACCTAGGTCCAAGAGTTAATGAACCTGGAGCTC
1 ATGAGCTTCAAAATTCCAAACACACAATAATCACCTAGGTCCAAGAGTTAATGTACCTAGAGCTC
* * * *
64844960 TAATACCACCAAATGTAACACCATATACCCGGCTTAGTCGCCAAGCCCTAATATTAGGATGTCAC
66 TGATACTACCAAATGTAACACCCTATACCCGGCTTGGTCGCCAAGCCCTAATATTAGGATGTCAC
* *
64845025 ACCACTGCCTCATGTCATACACAACAAGTAAAAGCTCATTCTAAACCATACGTCTTCCTTTTTTG
131 ACCACTGCCTCATGTCATACACAACAAGTAAAAGCTCATTCTAAACCATACATCTTCCATTTTTG
64845090 TATTTGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
196 TATTTGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
64845136 ATGAGCTTCAAAATTCCAAACACACAATAATCACCTAGGTCCAAGAGTTAATGTACCTAGAGCTC
1 ATGAGCTTCAAAATTCCAAACACACAATAATCACCTAGGTCCAAGAGTTAATGTACCTAGAGCTC
*
64845201 TGATACTACCAAATGTAACACCCTATACCCGGCTTGGTCACCAAGCCCTAATATTAGGATGTCAC
66 TGATACTACCAAATGTAACACCCTATACCCGGCTTGGTCGCCAAGCCCTAATATTAGGATGTCAC
* *
64845266 ACCACTGCCTCATATCATACACAACATGTAAAAGCTCATTCTAAACCATACATCTTCCATTTTTG
131 ACCACTGCCTCATGTCATACACAACAAGTAAAAGCTCATTCTAAACCATACATCTTCCATTTTTG
64845331 TATTTGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
196 TATTTGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
*
64845377 ATGAGCTTCAAAATTCCAAACACATAATAATCACCTAGGTCCAAGAGTTAATGTACCTAGAGCTC
1 ATGAGCTTCAAAATTCCAAACACACAATAATCACCTAGGTCCAAGAGTTAATGTACCTAGAGCTC
** * * *
64845442 TGATACTACCAAATGTAACACCCTATACCCTACTTGGTCGCCAAACTCTAATATCAGGATGTCAC
66 TGATACTACCAAATGTAACACCCTATACCCGGCTTGGTCGCCAAGCCCTAATATTAGGATGTCAC
*
64845507 ACCACTGTCTCATGTCATACACAACAAGTAAAAGCTCATTCTAAACCAT--A-CTTCCATTTTTG
131 ACCACTGCCTCATGTCATACACAACAAGTAAAAGCTCATTCTAAACCATACATCTTCCATTTTTG
*
64845569 TATTCGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
196 TATTTGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
64845615 TACAAGCTAA
Statistics
Matches: 456, Mismatches: 23, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
238 57 0.12
239 1 0.00
241 398 0.87
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (241 bp):
ATGAGCTTCAAAATTCCAAACACACAATAATCACCTAGGTCCAAGAGTTAATGTACCTAGAGCTC
TGATACTACCAAATGTAACACCCTATACCCGGCTTGGTCGCCAAGCCCTAATATTAGGATGTCAC
ACCACTGCCTCATGTCATACACAACAAGTAAAAGCTCATTCTAAACCATACATCTTCCATTTTTG
TATTTGTATAGGTTTTAAGTCAATCTCACTCTTTAGTTATCATCGT
Found at i:64850619 original size:20 final size:20
Alignment explanation
Indices: 64850576--64850622 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
64850566 CTAGCATATG
* *
64850576 TTTTCATAAAATTTGAGAAT
1 TTTTCATAAAATTTGACAAC
* *
64850596 TTTTCATCAAATTTTACAAC
1 TTTTCATAAAATTTGACAAC
64850616 TTTTCAT
1 TTTTCAT
64850623 TTTAGTCCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.13, G:0.04, T:0.49
Consensus pattern (20 bp):
TTTTCATAAAATTTGACAAC
Found at i:64853942 original size:17 final size:17
Alignment explanation
Indices: 64853920--64853957 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
64853910 GGTAATGGAT
*
64853920 ACTTGTTCTTTATTGTA
1 ACTTGTTCTTTATTCTA
64853937 ACTTGTTCTTTATTCTA
1 ACTTGTTCTTTATTCTA
64853954 ACTT
1 ACTT
64853958 TGTTGAGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.16, G:0.08, T:0.58
Consensus pattern (17 bp):
ACTTGTTCTTTATTCTA
Found at i:64856938 original size:43 final size:44
Alignment explanation
Indices: 64856884--64857032 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 44
64856874 ATTAAGAGAC
* * *
64856884 GTGATTACATGTAAGACCATGTCTAGGACATTAGAATTG-TATT
1 GTGATTTCATGTAAGACCATGTCTAGGACATTAGAATCGTTAAT
* * * * *
64856927 GTGATTTCATGTAAAACCATGTATGGGACATTGGCATCGTTAAT
1 GTGATTTCATGTAAGACCATGTCTAGGACATTAGAATCGTTAAT
* * * * * * *
64856971 -CGATTTCATGTAAGACCCTGTCTAGGATAGTGGCATCGAT-AT
1 GTGATTTCATGTAAGACCATGTCTAGGACATTAGAATCGTTAAT
**
64857013 GTGATAACATGTAAGACCAT
1 GTGATTTCATGTAAGACCAT
64857033 ATTTGGGATA
Statistics
Matches: 84, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
42 2 0.02
43 79 0.94
44 3 0.04
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (44 bp):
GTGATTTCATGTAAGACCATGTCTAGGACATTAGAATCGTTAAT
Found at i:64859659 original size:49 final size:50
Alignment explanation
Indices: 64859575--64859752 Score: 214
Period size: 52 Copynumber: 3.5 Consensus size: 50
64859565 ACTAGTAACT
* *
64859575 CAAGTGTGGTACTATGTGAAGGCCATTTTGAGAAG-AGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTCA
* *
64859624 CAAGTGTGGTACTATGTGAATGCCACTTTGTGAAGAAAGATATCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGC-TTGGTCA
* * * * * *
64859676 CAACTGTGGTACCATGTGAAGGCCACTTTGTGAAGAAGGTAGTTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTC-A
* *
64859727 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
64859753 CGGGTATCCA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
49 32 0.29
50 4 0.04
51 34 0.31
52 39 0.36
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (50 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTCA
Found at i:64862412 original size:28 final size:28
Alignment explanation
Indices: 64862367--64862475 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 28
64862357 ATACCTATAT
* * *
64862367 ATATGGCCTACTATGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACTTTC
* *
64862395 ATATGGCCCATTAGGCCCATTCACATTT-
1 ATATGGCCCACTAGGCCCAATCAC-TTTC
* * *
64862423 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCACTTTC
*
64862452 ATATAG-CCACTAGGCCCAAATCAC
1 ATATGGCCCACTAGGCCC-AATCAC
64862476 ATTTACAATC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 55 0.82
29 12 0.18
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACTTTC
Found at i:64864968 original size:28 final size:27
Alignment explanation
Indices: 64864923--64865030 Score: 121
Period size: 27 Copynumber: 3.9 Consensus size: 27
64864913 GGCTACTAGA
*
64864923 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGACAGAGCCACCAGAT
64864950 ACAGATAATCGTGACAGAGCCACCAGA-
1 ACAGATAAT-GTGACAGAGCCACCAGAT
* *
64864977 ACAGATATATGTGGCAGAGCCACCATAT
1 ACAGATA-ATGTGACAGAGCCACCAGAT
* *
64865005 -CAGATAATTTGTAGCATAGCCACCAG
1 ACAGATAATGTG-A-CAGAGCCACCAG
64865031 GACGCTTTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.06
27 37 0.54
28 28 0.41
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGACAGAGCCACCAGAT
Found at i:64865479 original size:16 final size:16
Alignment explanation
Indices: 64865460--64865494 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
64865450 CTTTTCAGCA
*
64865460 TTTCGACATTTCGGCT
1 TTTCAACATTTCGGCT
*
64865476 TTTCAACGTTTCGGCT
1 TTTCAACATTTCGGCT
64865492 TTT
1 TTT
64865495 GCCGATCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCAACATTTCGGCT
Found at i:64872841 original size:28 final size:26
Alignment explanation
Indices: 64872784--64872897 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
64872774 CAGCATGGCT
** *
64872784 ACCAGAACAGATAATGTGATAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
64872810 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
64872838 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
64872865 ACCAGATCAGATAATTTGTGGCATAGCC
1 ACCAGAACAGATAA--TGTGGCAGAGCC
64872893 ACCAG
1 ACCAG
64872898 GACACTTCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
26 7 0.09
27 39 0.50
28 32 0.41
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:64872871 original size:55 final size:54
Alignment explanation
Indices: 64872784--64872897 Score: 158
Period size: 55 Copynumber: 2.1 Consensus size: 54
64872774 CAGCATGGCT
* *
64872784 ACCAGAACAGATAATGTGATAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCC
* * *
64872838 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCC
64872893 ACCAG
1 ACCAG
64872898 GACACTTCCT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 20 0.38
55 33 0.62
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCC
Found at i:64877232 original size:39 final size:39
Alignment explanation
Indices: 64877189--64877521 Score: 308
Period size: 39 Copynumber: 8.5 Consensus size: 39
64877179 CATATTCAGT
* * * *
64877189 TTTAAGCATGTATCATATTACACATTTAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*** * *
64877228 TTTAAGCATATATCACAATAGTTATAAAATCACATAACT
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* * * *
64877267 TTTAAGTATATATCACAATACTCGTATAATGACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* * * *
64877306 TTCAAGCATATATCATAATATACATATAATCTCATAAC-
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* * * * *
64877344 TTTCAAGTATATATCACAATACTCGTATTATGACATAACA
1 TTT-AAGCATATATCACAATACACATATAATCACATAACA
* * * **
64877384 TTCAAGCATATATCATAATATACATATAATCTTATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
** * * *
64877423 TTTAAGTGTATATCACAATACTCGTATAATGACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* * * ** *
64877462 TTCAAGCATATATCATAATATACATATAATCTTACAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
64877501 TTTAAGCATATATCACAATAC
1 TTTAAGCATATATCACAATAC
64877522 TCAAAACATC
Statistics
Matches: 225, Mismatches: 67, Indels: 4
0.76 0.23 0.01
Matches are distributed among these distances:
38 2 0.01
39 221 0.98
40 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:64877317 original size:78 final size:78
Alignment explanation
Indices: 64877215--64877523 Score: 469
Period size: 78 Copynumber: 4.0 Consensus size: 78
64877205 ATTACACATT
* * * * * * *
64877215 TAATCACATAACATTTAAGCATATATCACAATAGT-TATAAAATCACATAACTTTTAAGTATATA
1 TAATGACATAACATTCAAGCATATATCATAATA-TACATATAATCTCATAACATTTAAGTATATA
64877279 TCACAATACTCGTA
65 TCACAATACTCGTA
64877293 TAATGACATAACATTCAAGCATATATCATAATATACATATAATCTCATAAC-TTTCAAGTATATA
1 TAATGACATAACATTCAAGCATATATCATAATATACATATAATCTCATAACATTT-AAGTATATA
64877357 TCACAATACTCGTA
65 TCACAATACTCGTA
* * *
64877371 TTATGACATAACATTCAAGCATATATCATAATATACATATAATCTTATAACATTTAAGTGTATAT
1 TAATGACATAACATTCAAGCATATATCATAATATACATATAATCTCATAACATTTAAGTATATAT
64877436 CACAATACTCGTA
66 CACAATACTCGTA
* * *
64877449 TAATGACATAACATTCAAGCATATATCATAATATACATATAATCTTACAACATTTAAGCATATAT
1 TAATGACATAACATTCAAGCATATATCATAATATACATATAATCTCATAACATTTAAGTATATAT
64877514 CACAATACTC
66 CACAATACTC
64877524 AAAACATCTT
Statistics
Matches: 215, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
77 4 0.02
78 208 0.97
79 3 0.01
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (78 bp):
TAATGACATAACATTCAAGCATATATCATAATATACATATAATCTCATAACATTTAAGTATATAT
CACAATACTCGTA
Found at i:64884306 original size:19 final size:20
Alignment explanation
Indices: 64884270--64884308 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
64884260 AAATAAACAT
64884270 ATCATTCAAAGCAATTAAAC
1 ATCATTCAAAGCAATTAAAC
* *
64884290 ATCA-TCAAATCATTTAAAC
1 ATCATTCAAAGCAATTAAAC
64884309 TTTGAAGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCATTCAAAGCAATTAAAC
Found at i:64892525 original size:29 final size:29
Alignment explanation
Indices: 64892492--64892568 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 29
64892482 ACCGGACTAA
*
64892492 ATTGAAACATTAACATTCATTTCATAAGC
1 ATTGAAGCATTAACATTCATTTCATAAGC
64892521 ATTGAAGCATTAAAGATAACATTCATTTCATAAGC
1 ATTGAAGCA-T-----TAACATTCATTTCATAAGC
64892556 ATTGAAGCATTAA
1 ATTGAAGCATTAA
64892569 AGATCAATCA
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
29 11 0.27
30 1 0.02
34 1 0.02
35 28 0.68
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.32
Consensus pattern (29 bp):
ATTGAAGCATTAACATTCATTTCATAAGC
Found at i:64892548 original size:35 final size:35
Alignment explanation
Indices: 64892502--64892572 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
64892492 ATTGAAACAT
64892502 TAACATTCATTTCATAAGCATTGAAGCATTAAAGA
1 TAACATTCATTTCATAAGCATTGAAGCATTAAAGA
64892537 TAACATTCATTTCATAAGCATTGAAGCATTAAAGA
1 TAACATTCATTTCATAAGCATTGAAGCATTAAAGA
64892572 T
1 T
64892573 CAATCATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.32
Consensus pattern (35 bp):
TAACATTCATTTCATAAGCATTGAAGCATTAAAGA
Found at i:64909656 original size:33 final size:33
Alignment explanation
Indices: 64909619--64910100 Score: 135
Period size: 33 Copynumber: 14.4 Consensus size: 33
64909609 TGGCCCTGCC
** * *
64909619 ATGGTCTTACATTCGTAGTGCCATAACCTAGTT
1 ATGGTCTTACATTCAAAATGCCATAACCTAGCT
*
64909652 ATGGTCTTATCA-TCAAAATGCCATAGCCTAGCT
1 ATGGTCTTA-CATTCAAAATGCCATAACCTAGCT
** * *
64909685 ATGGTCTTACATAT-AAACACTGCCATGGTCC-AACC
1 ATGGTCTTACAT-TCAAA-A-TGCCAT-AACCTAGCT
** * * * * *
64909720 ATGGTCTTATGTCCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCAAAATGCCATAACCTAGCT
* * *
64909753 ATGGTCTTAACA-TCAGAATGCCATAGCCCAGCT
1 ATGGTCTT-ACATTCAAAATGCCATAACCTAGCT
* ** * *
64909786 ATGGTCTTACATAT-AAACATTGTCATGGTCC-AACC
1 ATGGTCTTACAT-TCAAA-A-TGCCAT-AACCTAGCT
* * * * * *
64909821 ATGGTCTTACGTCCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCAAAATGCCATAACCTAGCT
* * *
64909854 ATGGTCTTAACA-TCAGAATGCCATAGCCCAGCT
1 ATGGTCTT-ACATTCAAAATGCCATAACCTAGCT
* ** * *
64909887 ATGGTCTTACATAT-AAACATTGTCATGGTCC-AACC
1 ATGGTCTTACAT-TCAAA-A-TGCCAT-AACCTAGCT
* * * * * **
64909922 ATGGTCTTACGTCCATAGTGCCATAACCCAATT
1 ATGGTCTTACATTCAAAATGCCATAACCTAGCT
* * *
64909955 ATGGTCTTAACA-TCAGAATGCCATAGCCCAGCT
1 ATGGTCTT-ACATTCAAAATGCCATAACCTAGCT
* ** **
64909988 ATGGTCTTACATAT-AAACATTGTCATGTTCC-AATT
1 ATGGTCTTACAT-TCAAA-A-TGCCAT-AACCTAGCT
* * * * * *
64910023 ATGATCTTACATCCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCAAAATGCCATAACCTAGCT
* *
64910056 ATGGTCTTATCA-TCAGAATGCCATAGCCTAGCT
1 ATGGTCTTA-CATTCAAAATGCCATAACCTAGCT
64910089 ATGGTCTTACAT
1 ATGGTCTTACAT
64910101 ATGAATGCAA
Statistics
Matches: 324, Mismatches: 91, Indels: 68
0.67 0.19 0.14
Matches are distributed among these distances:
32 21 0.06
33 198 0.61
34 17 0.05
35 80 0.25
36 8 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGGTCTTACATTCAAAATGCCATAACCTAGCT
Found at i:64909744 original size:101 final size:101
Alignment explanation
Indices: 64909571--64910102 Score: 825
Period size: 101 Copynumber: 5.3 Consensus size: 101
64909561 GTTTCCTTTG
* * ** * ** * * *
64909571 TGCCATAGTCCAACTATGGTCTT--ATATATCCATTGTCATGGCCCTGCCATGGTCTTACATTCG
1 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
* * *
64909634 TAGTGCCATAACCTAGTTATGGTCTTATCATCAAAA
66 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
* * * *
64909670 TGCCATAGCCTAGCTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTATGTCCA
1 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
64909735 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
66 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
64909771 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
1 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
64909836 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
66 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
64909872 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
1 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
*
64909937 TAGTGCCATAACCCAATTATGGTCTTAACATCAGAA
66 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
* ** * *
64909973 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGTTCCAATTATGATCTTACATCCA
1 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
*
64910038 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAA
66 TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
*
64910074 TGCCATAGCCTAGCTATGGTCTTACATAT
1 TGCCATAGCCCAGCTATGGTCTTACATAT
64910103 GAATGCAACT
Statistics
Matches: 401, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
99 20 0.05
101 381 0.95
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (101 bp):
TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCCA
TAGTGCCATAACCCAGTTATGGTCTTAACATCAGAA
Found at i:64909825 original size:68 final size:68
Alignment explanation
Indices: 64909738--64910100 Score: 208
Period size: 68 Copynumber: 5.4 Consensus size: 68
64909728 ATGTCCATAG
* **
64909738 TGCCATAACCCAGTTATGGTCTTAACAT-CAGAATGCCATAGCCCAGCTATGGTCTTACATATAA
1 TGCCATAGCCCAACTATGGTCTT-ACATCCAGAATGCCATAGCCCAGCTATGGTCTTACATATAA
64909802 ACAT
65 ACAT
* * * * * * * * * * *
64909806 TGTCATGGTCCAACCATGGTCTTACGTCCATAGTGCCATAACCCAGTTATGGTCTTAACAT-CAG
1 TGCCATAGCCCAACTATGGTCTTACATCCAGAATGCCATAGCCCAGCTATGGTCTT-ACATATAA
64909870 A-A-
65 ACAT
* ** * * * * * * * *
64909872 TGCCATAGCCCAGCTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTAC--GTC
1 TGCCATAGCCCAACTATGGTCTTACATCCAGA-A-TGCCATAGCCCAGCTATGGTCTTACATATA
* * *
64909935 CATAG
64 AACAT
* *
64909940 TGCCATAACCCAATTATGGTCTTAACAT-CAGAATGCCATAGCCCAGCTATGGTCTTACATATAA
1 TGCCATAGCCCAACTATGGTCTT-ACATCCAGAATGCCATAGCCCAGCTATGGTCTTACATATAA
64910004 ACAT
65 ACAT
* * * * * * * * *
64910008 TGTCAT-GTTCCAATTATGATCTTACATCCATAGTGCCATAACCCAGTTATGGTCTTATCAT-CA
1 TGCCATAG-CCCAACTATGGTCTTACATCCAGAATGCCATAGCCCAGCTATGGTCTTA-CATATA
*
64910071 GA-A-
64 AACAT
* *
64910074 TGCCATAGCCTAGCTATGGTCTTACAT
1 TGCCATAGCCCAACTATGGTCTTACAT
64910101 ATGAATGCAA
Statistics
Matches: 216, Mismatches: 65, Indels: 30
0.69 0.21 0.10
Matches are distributed among these distances:
66 63 0.29
67 14 0.06
68 128 0.59
69 11 0.05
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (68 bp):
TGCCATAGCCCAACTATGGTCTTACATCCAGAATGCCATAGCCCAGCTATGGTCTTACATATAAA
CAT
Found at i:64913408 original size:31 final size:29
Alignment explanation
Indices: 64913373--64913437 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
64913363 TGATCACTTC
*
64913373 GTAACAAAATAATAATATAAGTGACTAAAAT
1 GTAAC-AAATAA-AACATAAGTGACTAAAAT
** *
64913404 GTAACATTTCAAACATAAGTGACTAAAAT
1 GTAACAAATAAAACATAAGTGACTAAAAT
64913433 GTAAC
1 GTAAC
64913438 CTGGGGCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 22 0.73
30 3 0.10
31 5 0.17
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26
Consensus pattern (29 bp):
GTAACAAATAAAACATAAGTGACTAAAAT
Found at i:64913455 original size:31 final size:29
Alignment explanation
Indices: 64913391--64913459 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
64913381 ATAATAATAT
** *
64913391 AAGTGACTAAAATGTAACATTTCAAACAT
1 AAGTGACTAAAATGTAACATGGCAAACAA
*
64913420 AAGTGACTAAAATGTAACCTGGGGCAAACAA
1 AAGTGACTAAAATGTAACAT--GGCAAACAA
64913451 AAGTGACTA
1 AAGTGACTA
64913460 TTTTTGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.56
31 15 0.44
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.22
Consensus pattern (29 bp):
AAGTGACTAAAATGTAACATGGCAAACAA
Found at i:64916056 original size:43 final size:43
Alignment explanation
Indices: 64916006--64916089 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
64915996 TGAGGCATGT
* ** *
64916006 AGCATTCGAGCTCGTTGAAAGGTTTGAGTTCATTATGGATGCG
1 AGCATTCGAGCTCGCTGAAAGGTCCGAGCTCATTATGGATGCG
*
64916049 AGCATTCGAGCTCGCTGAGAGGTCCGAGCTCATTATGGATG
1 AGCATTCGAGCTCGCTGAAAGGTCCGAGCTCATTATGGATG
64916090 TGGTACATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (43 bp):
AGCATTCGAGCTCGCTGAAAGGTCCGAGCTCATTATGGATGCG
Found at i:64929430 original size:46 final size:46
Alignment explanation
Indices: 64929380--64929555 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
64929370 TGGTTGAGCA
64929380 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATG
* * **
64929426 TCCGAACTCGTTGAGTT-AAGTCCGAGTTC-GTGA--GAT-TTAACTAGG
1 TCCGAACTCGTTGAGTTGAA-TCCGAGTTCACTTATGGATGCGAA-T--G
* * *
64929471 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATG
* * * * *
64929519 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGG
64929556 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 58 0.56
47 25 0.24
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATG
Found at i:64929546 original size:93 final size:93
Alignment explanation
Indices: 64929377--64929548 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
64929367 GGATGGTTGA
* * *
64929377 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64929442 TAAGTCCGAGTTCGTGAGATTTAACTAG
66 TAAGTCCGAGTTCGTGAGATTTAACTAG
* *
64929470 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
* *
64929535 TGAGTCTGAGTTCG
66 TAAGTCCGAGTTCG
64929549 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TAAGTCCGAGTTCGTGAGATTTAACTAG
Found at i:64931579 original size:135 final size:135
Alignment explanation
Indices: 64931337--64931607 Score: 542
Period size: 135 Copynumber: 2.0 Consensus size: 135
64931327 GCCGAGAGAG
64931337 CAGAGTTCTGGCTTGAAAATTCAATCCGGGTATTTGACGAATTATCTTGTACACCTGAAGAATGT
1 CAGAGTTCTGGCTTGAAAATTCAATCCGGGTATTTGACGAATTATCTTGTACACCTGAAGAATGT
64931402 TTGAAATGCGCTATATCTTTGTTGAGGGATTCAGCTTATAATTGGTGGAAGACTTTGATTTCGGT
66 TTGAAATGCGCTATATCTTTGTTGAGGGATTCAGCTTATAATTGGTGGAAGACTTTGATTTCGGT
64931467 GGTAC
131 GGTAC
64931472 CAGAGTTCTGGCTTGAAAATTCAATCCGGGTATTTGACGAATTATCTTGTACACCTGAAGAATGT
1 CAGAGTTCTGGCTTGAAAATTCAATCCGGGTATTTGACGAATTATCTTGTACACCTGAAGAATGT
64931537 TTGAAATGCGCTATATCTTTGTTGAGGGATTCAGCTTATAATTGGTGGAAGACTTTGATTTCGGT
66 TTGAAATGCGCTATATCTTTGTTGAGGGATTCAGCTTATAATTGGTGGAAGACTTTGATTTCGGT
64931602 GGTAC
131 GGTAC
64931607 C
1 C
64931608 GTAAGACTTA
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (135 bp):
CAGAGTTCTGGCTTGAAAATTCAATCCGGGTATTTGACGAATTATCTTGTACACCTGAAGAATGT
TTGAAATGCGCTATATCTTTGTTGAGGGATTCAGCTTATAATTGGTGGAAGACTTTGATTTCGGT
GGTAC
Found at i:64939553 original size:24 final size:24
Alignment explanation
Indices: 64939521--64939569 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
64939511 TAACGTAAGT
64939521 TAGCTTAGCCATTTCGGTGGCTAA
1 TAGCTTAGCCATTTCGGTGGCTAA
*
64939545 TAGCTTAGCCATTTTGGTGGCTAA
1 TAGCTTAGCCATTTCGGTGGCTAA
64939569 T
1 T
64939570 GTAGCCTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.37
Consensus pattern (24 bp):
TAGCTTAGCCATTTCGGTGGCTAA
Found at i:64940292 original size:17 final size:17
Alignment explanation
Indices: 64940270--64940303 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64940260 AATAAAACCA
64940270 AATATTATAATATTAAT
1 AATATTATAATATTAAT
* *
64940287 AATATTTTAATCTTAAT
1 AATATTATAATATTAAT
64940304 TTAAAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
AATATTATAATATTAAT
Found at i:64940388 original size:16 final size:16
Alignment explanation
Indices: 64940369--64940399 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64940359 ACATATTTAT
64940369 ATTTAATAATATAATA
1 ATTTAATAATATAATA
*
64940385 ATTTATTAATATAAT
1 ATTTAATAATATAAT
64940400 TTATAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTAATAATATAATA
Found at i:64940421 original size:20 final size:20
Alignment explanation
Indices: 64940382--64940439 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
64940372 TAATAATATA
* * *
64940382 ATAATTTATTAATATAATTT
1 ATAATTTAATAAAATTATTT
64940402 ATAATTTAATAAAATTA-TT
1 ATAATTTAATAAAATTATTT
64940421 -TAATATT-ATAAAATTATTT
1 ATAAT-TTAATAAAATTATTT
64940440 CAATGTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 13 0.39
19 6 0.18
20 14 0.42
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATAATTTAATAAAATTATTT
Found at i:64941914 original size:26 final size:26
Alignment explanation
Indices: 64941868--64941999 Score: 106
Period size: 26 Copynumber: 5.1 Consensus size: 26
64941858 TACATAGTAT
* * *
64941868 CTGCTGAATAACCACTAGCTCAAGGC
1 CTGCTAAATAATCACTGGCTCAAGGC
* *
64941894 CTACTAAATAATCACTGGCTCATA-AC
1 CTGCTAAATAATCACTGGCTCA-AGGC
* ** *
64941920 CTGCTAAGTAATCA-TCGAATCAAAGC
1 CTGCTAAATAATCACT-GGCTCAAGGC
* * *
64941946 ATGTTAAATAATCATTGGCTCAAGGC
1 CTGCTAAATAATCACTGGCTCAAGGC
* *
64941972 CTGGTAAATAATCACAGGCTCAAGGC
1 CTGCTAAATAATCACTGGCTCAAGGC
64941998 CT
1 CT
64942000 ATTATTCAAG
Statistics
Matches: 82, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
25 2 0.02
26 78 0.95
27 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (26 bp):
CTGCTAAATAATCACTGGCTCAAGGC
Found at i:64942155 original size:34 final size:34
Alignment explanation
Indices: 64942109--64942175 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
64942099 GTAATAAGTA
*
64942109 AAAATCATTATAAACATCAGAGTAATATTACGCT
1 AAAATCACTATAAACATCAGAGTAATATTACGCT
*
64942143 AAAATCACTATAAACATGAGAGTAATATTACGC
1 AAAATCACTATAAACATCAGAGTAATATTACGC
64942176 ACTTACCTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (34 bp):
AAAATCACTATAAACATCAGAGTAATATTACGCT
Found at i:64947692 original size:24 final size:21
Alignment explanation
Indices: 64947661--64947707 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
64947651 AATTTTCCCA
64947661 TGGAATAGGGTCACACGCCAGTG
1 TGGAATAGGG--ACACGCCAGTG
*
64947684 TGGACATAGGGACACGCCCGTG
1 TGGA-ATAGGGACACGCCAGTG
64947706 TG
1 TG
64947708 CCTTTGGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 4 0.18
24 6 0.27
ACGTcount: A:0.23, C:0.23, G:0.36, T:0.17
Consensus pattern (21 bp):
TGGAATAGGGACACGCCAGTG
Found at i:64951283 original size:42 final size:42
Alignment explanation
Indices: 64951226--64951353 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 42
64951216 TAAGTCTAAA
* * **
64951226 ATCATTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGAT
1 ATCATTCACCAGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
*
64951267 ATCAGTTCACCAGCATTATAGCCTGCTATGCCCGAAGCCCGAT
1 ATCA-TTCACCAGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
* * *
64951310 ATTATGTCACC-GACATTATAGCCTGCTAGGTCCGAAGCCAGAT
1 ATCAT-TCACCAG-CATTATAGCCTGCTAGGCCCGAAGCCCGAT
64951353 A
1 A
64951354 ATATTATTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 4 0.05
42 13 0.18
43 57 0.77
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (42 bp):
ATCATTCACCAGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
Found at i:64953215 original size:42 final size:42
Alignment explanation
Indices: 64953115--64953358 Score: 167
Period size: 43 Copynumber: 5.7 Consensus size: 42
64953105 AACAAGTACA
* * *
64953115 ATGCTGATGTCCCAGAC-GTGGTCTTACATGTAATTCA-ATATTG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACG-AAATCACATA-TG
** *
64953158 ATGCCTCTGTCCCAGACAGGGTCTTACACGAAATCAGATATG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGAAATCACATATG
* * * *
64953200 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACAGGGTCTTACAC-GAAATCACATAT-G
* * * * *
64953243 AGGCCTG-TGTCCCAGACAGAGTCTTACACTAAATCAGATACG
1 ATGCC-GATGTCCCAGACAGGGTCTTACACGAAATCACATATG
* ** * *
64953285 ATGCCAATGTCCCAGACATTGTCTTATACGTAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACAGGGTCTTACACG-AAATCACATAT-G
* *
64953328 AGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 ATGCC-GATGTCCCAGACAGGGTCTTACACGA
64953359 TGTCACAGAC
Statistics
Matches: 158, Mismatches: 33, Indels: 21
0.75 0.16 0.10
Matches are distributed among these distances:
42 67 0.42
43 89 0.56
44 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGAAATCACATATG
Found at i:64953267 original size:85 final size:84
Alignment explanation
Indices: 64953160--64953358 Score: 317
Period size: 85 Copynumber: 2.3 Consensus size: 84
64953150 CAATATTGAT
* * *
64953160 GCCTCTGTCCCAGACAGGGTCTTACACGAAATCAGATATGATGCCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACA-GGTCTTACACGAAATCAGATACGATGCCAATGTCCCAGACATGGTCTT
64953225 ATACATAAATCTCAATCGAG
65 ATACATAAATCTCAATCGAG
* *
64953245 GCCTGTGTCCCAGACAGAGTCTTACACTAAATCAGATACGATGCCAATGTCCCAGACATTGTCTT
1 GCCTGTGTCCCAGACAG-GTCTTACACGAAATCAGATACGATGCCAATGTCCCAGACATGGTCTT
*
64953310 ATACGTAAATCTCAATCGAG
65 ATACATAAATCTCAATCGAG
64953330 GCCTGTGTCCCAGACACGGTCTTACACGA
1 GCCTGTGTCCCAGACA-GGTCTTACACGA
64953359 TGTCACAGAC
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
84 1 0.01
85 103 0.98
86 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (84 bp):
GCCTGTGTCCCAGACAGGTCTTACACGAAATCAGATACGATGCCAATGTCCCAGACATGGTCTTA
TACATAAATCTCAATCGAG
Found at i:64955720 original size:36 final size:36
Alignment explanation
Indices: 64955679--64955747 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
64955669 CAACATGCTC
*
64955679 ATATACTTACTCATATTTATTCCTTATCAATCATAA
1 ATATACTTACTCATATTCATTCCTTATCAATCATAA
64955715 ATATACTTACTCATATTCATTCCTTATCAATCA
1 ATATACTTACTCATATTCATTCCTTATCAATCA
64955748 AACGCCATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (36 bp):
ATATACTTACTCATATTCATTCCTTATCAATCATAA
Found at i:64963066 original size:46 final size:46
Alignment explanation
Indices: 64962966--64963132 Score: 196
Period size: 46 Copynumber: 3.6 Consensus size: 46
64962956 AAGCTGACGC
* * * * * *
64962966 CATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGGTG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAATGCCGATG
64963014 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
* *
64963060 CATGTCCCAGACATGTCTTACATTGGCTCTCA--T-AATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA--T-GCCGATG
64963106 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
64963133 ATACATATCA
Statistics
Matches: 106, Mismatches: 10, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 1 0.01
46 74 0.70
47 2 0.02
48 26 0.25
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
Found at i:64974049 original size:41 final size:41
Alignment explanation
Indices: 64973992--64974141 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
64973982 TCGGGGTTTA
*
64973992 AATCTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
64974033 AATCTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
64974074 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
64974114 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
64974142 TGAGTCAGCG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 31 0.33
41 62 0.67
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:64980757 original size:37 final size:38
Alignment explanation
Indices: 64980709--64980797 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 38
64980699 AGTGGACCAT
*
64980709 ATCCGGACTAAGTCGAAGGCATTTGTGCGAGATACT-A
1 ATCCGGGCTAAGTCGAAGGCATTTGTGCGAGATACTAA
* * *
64980746 TTCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCGAAGGCATTTGTGCGAGATACTAA
*
64980784 ATCCGGGTTAAGTC
1 ATCCGGGCTAAGTC
64980798 CCGAAGTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
37 32 0.73
38 12 0.27
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (38 bp):
ATCCGGGCTAAGTCGAAGGCATTTGTGCGAGATACTAA
Found at i:64980839 original size:36 final size:37
Alignment explanation
Indices: 64980730--64980839 Score: 102
Period size: 37 Copynumber: 3.0 Consensus size: 37
64980720 GTCGAAGGCA
* ** *
64980730 TTTGTGCGAGATACTATTCCGGGCTAAG--CCGAAGGCA
1 TTTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAA-G-T
*
64980767 TTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGT
1 TTTGTGCGAGTTACTAAA-CCGGGCTAAGTCCCGAAGT
*
64980805 TTTGTG-GAGTTACTATAA-CGGGCTATGTCCCGAAG
1 TTTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAG
64980840 GCATTTGAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
36 15 0.24
37 24 0.39
38 17 0.27
39 1 0.02
40 5 0.08
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (37 bp):
TTTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGT
Found at i:64991047 original size:41 final size:41
Alignment explanation
Indices: 64990990--64991139 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
64990980 TCGGGGTTTA
64990990 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
64991031 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
64991072 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
64991112 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
64991140 TGAGTCAGCG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:65000319 original size:24 final size:23
Alignment explanation
Indices: 65000285--65000329 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
65000275 GCTTAATAAC
65000285 AAGAAGCTCATAAGAGCTTAAAT
1 AAGAAGCTCATAAGAGCTTAAAT
**
65000308 AAGAATGCTCATGCGAGCTTAA
1 AAGAA-GCTCATAAGAGCTTAA
65000330 CAGGTAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (23 bp):
AAGAAGCTCATAAGAGCTTAAAT
Found at i:65012818 original size:6 final size:6
Alignment explanation
Indices: 65012807--65012993 Score: 172
Period size: 6 Copynumber: 30.8 Consensus size: 6
65012797 AACCAAAATG
*
65012807 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
65012855 AGTAA-C AGAATT AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
65012904 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
65012952 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
65012994 GTGAATCCAA
Statistics
Matches: 149, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 11 0.07
6 125 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:65012822 original size:30 final size:30
Alignment explanation
Indices: 65012807--65012993 Score: 253
Period size: 30 Copynumber: 6.4 Consensus size: 30
65012797 AACCAAAATG
*
65012807 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
65012837 AGAATCAGAATCA-ATATTAGTAACAGAATT
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
65012867 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
65012892 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
65012922 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
65012952 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
65012983 AGAATCAGAAT
1 AGAATCAGAAT
65012994 GTGAATCCAA
Statistics
Matches: 139, Mismatches: 8, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
24 2 0.01
25 18 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 90 0.65
31 24 0.17
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:65012906 original size:85 final size:85
Alignment explanation
Indices: 65012807--65012993 Score: 347
Period size: 85 Copynumber: 2.2 Consensus size: 85
65012797 AACCAAAATG
*
65012807 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
65012872 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
*
65012892 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
65012957 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
65012977 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
65012994 GTGAATCCAA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 99 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:65013181 original size:27 final size:27
Alignment explanation
Indices: 65013111--65013184 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
65013101 AGCATGGCTG
* *
65013111 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
* *
65013137 CCAG-ATACAAATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
65013164 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
65013185 AACCCACCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 30 0.79
28 3 0.08
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Done.