Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 195 of 332
Found at i:65013397 original size:22 final size:22
Alignment explanation
Indices: 65013349--65013407 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
65013339 GTAAATACGT
*
65013349 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
65013371 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
65013393 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
65013408 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:65013574 original size:27 final size:26
Alignment explanation
Indices: 65013495--65013577 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
65013485 TTGATCGGTC
* * *
65013495 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
65013521 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
65013548 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
65013575 AAC
1 AAC
65013578 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:65013971 original size:27 final size:27
Alignment explanation
Indices: 65013776--65013971 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
65013766 GGGGCAAAAT
* * * *
65013776 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
65013803 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
65013830 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
65013857 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
65013884 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
65013911 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
65013938 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
65013965 AGTAATT
1 GGTAATT
65013972 TCACAATCAA
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:65014013 original size:27 final size:27
Alignment explanation
Indices: 65013976--65014304 Score: 356
Period size: 27 Copynumber: 12.2 Consensus size: 27
65013966 GTAATTTCAC
* * *
65013976 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
65014003 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* ** *
65014030 AA-CTGAGGGTAAACCAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
65014057 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
65014084 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
65014111 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
65014138 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
65014165 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
65014192 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * * *
65014219 AATCAAGGGTAAAACGATAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
65014246 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
65014273 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
65014300 AATCG
1 AATCG
65014305 GGAGTACTTT
Statistics
Matches: 258, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.00
27 255 0.99
28 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:65014092 original size:81 final size:81
Alignment explanation
Indices: 65013976--65014303 Score: 392
Period size: 81 Copynumber: 4.0 Consensus size: 81
65013966 GTAATTTCAC
* * * * *
65013976 AATCAAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATC-GAGGGT
* *
65014040 AAACCAATAATTCTGTA
65 AAAACAGTAATTCTGTA
* * *
65014057 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
** * **
65014122 AAATGGTAATTTTACA
66 AAACAGTAATTCTGTA
* *
65014138 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTCTATAAA-CTGAGGG
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTATAAATC-GAGGG
65014201 TAAAACAGTAATTCTGTA
64 TAAAACAGTAATTCTGTA
* * * * * *
65014219 AATCAAGGGTAAAACGATAATTTTAAAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
*
65014284 AAACGGTAATTCTGTA
66 AAACAGTAATTCTGTA
65014300 AATC
1 AATC
65014304 GGGAGTACTT
Statistics
Matches: 208, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.00
81 204 0.98
82 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.28
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:65020676 original size:39 final size:40
Alignment explanation
Indices: 65020546--65020686 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 40
65020536 AGTGCTCAAG
* * * *
65020546 CAAGCGATATCTATTGAATCTACTAAAATGTATGTGCTT-T
1 CAAGCCATACCTACTGATTCTACTAAAATGTATGTG-TTAT
* * * *
65020586 CAAGCCATACCTACCGATCCCACTAAAATGTATGTGCTAT
1 CAAGCCATACCTACTGATTCTACTAAAATGTATGTGTTAT
* *
65020626 CGAGCCTTACCTACTGATTCTACTAAAA-GTATGCT-TTAT
1 CAAGCCATACCTACTGATTCTACTAAAATGTATG-TGTTAT
*
65020665 CAAGCCATACCTAATGATTCTA
1 CAAGCCATACCTACTGATTCTA
65020687 TTGAAAGTAG
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 28 0.34
40 54 0.66
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (40 bp):
CAAGCCATACCTACTGATTCTACTAAAATGTATGTGTTAT
Found at i:65035000 original size:47 final size:47
Alignment explanation
Indices: 65034947--65035382 Score: 687
Period size: 47 Copynumber: 9.3 Consensus size: 47
65034937 ACAAGATATG
*
65034947 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65034994 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
65035041 TATAGGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
65035088 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
*
65035135 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* ** *
65035182 TATATGTGACAAGGCCTAATGGCTGATGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
65035229 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
65035276 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
65035323 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65035370 TAAATGTGATAAG
1 TATATGTGATAAG
65035383 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 28, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
46 4 0.01
47 350 0.98
48 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:65035119 original size:22 final size:22
Alignment explanation
Indices: 65035091--65035166 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
65035081 AAGTGTATAT
65035091 ATGTGATAAGGCTGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* ***
65035113 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCTG-AA-TGGCCA
*
65035137 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
65035160 ATGTGAT
1 ATGTGAT
65035167 GAATGTGAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 16 0.40
23 8 0.20
24 8 0.20
25 8 0.20
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:65036224 original size:135 final size:135
Alignment explanation
Indices: 65035982--65036253 Score: 526
Period size: 135 Copynumber: 2.0 Consensus size: 135
65035972 AATTGGTGAA
*
65035982 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
1 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATATGCTTTGGAAATATTCGACCA
65036047 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
66 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
65036112 AGTTC
131 AGTTC
65036117 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATATGCTTTGGAAATATTCGACCA
1 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATATGCTTTGGAAATATTCGACCA
*
65036182 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTAT
66 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
65036247 AGTTC
131 AGTTC
65036252 GA
1 GA
65036254 GATGAAGCTC
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 135 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (135 bp):
GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATATGCTTTGGAAATATTCGACCA
TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
AGTTC
Found at i:65037531 original size:38 final size:38
Alignment explanation
Indices: 65037488--65037576 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 38
65037478 AACTATAAGT
* *
65037488 AGAGATTGTGTCCGGGTAAAGACCCGATGACTATGTGT
1 AGAGATTATGTCCGGGTAAAGACCCGATGACTATGTGC
* * * *
65037526 GGAGATTATGCCCGGGTAAAGATCCGATGGCTATGTGC
1 AGAGATTATGTCCGGGTAAAGACCCGATGACTATGTGC
65037564 AGAGATTATGTCC
1 AGAGATTATGTCC
65037577 AGATTAAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (38 bp):
AGAGATTATGTCCGGGTAAAGACCCGATGACTATGTGC
Found at i:65037693 original size:40 final size:40
Alignment explanation
Indices: 65037636--65037906 Score: 488
Period size: 40 Copynumber: 6.8 Consensus size: 40
65037626 CTCGACGATG
* *
65037636 ATCCGGGTTAAGACCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
65037676 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
65037716 ATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
65037756 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
65037796 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
65037836 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* * *
65037876 ATCCGGGCTAAGTCCTGAAGGGCATTAGTGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
65037907 CGATGACGTG
Statistics
Matches: 224, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 224 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:65038153 original size:28 final size:28
Alignment explanation
Indices: 65038114--65038267 Score: 109
Period size: 28 Copynumber: 5.5 Consensus size: 28
65038104 TGAATTGAGA
*
65038114 CACTGTGTGTGCGAATTCTTTAACCGAG
1 CACTATGTGTGCGAATTCTTTAACCGAG
* ** * **
65038142 CACTATGTGTGC-AAGATCGGTCAGTG-G
1 CACTATGTGTGCGAA-TTCTTTAACCGAG
*
65038169 ACACTGTGTGTGCGAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
** * **
65038198 CACTATGTGTGCGAGA-TCGGTCAGTG-G
1 CACTATGTGTGCGA-ATTCTTTAACCGAG
* *
65038225 ACACTGTGTGTGTGAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
65038254 CACTATGTGTGCGA
1 CACTATGTGTGCGA
65038268 GATCGGTCAG
Statistics
Matches: 89, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
27 5 0.06
28 79 0.89
29 5 0.06
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (28 bp):
CACTATGTGTGCGAATTCTTTAACCGAG
Found at i:65038176 original size:56 final size:56
Alignment explanation
Indices: 65038112--65038294 Score: 339
Period size: 56 Copynumber: 3.3 Consensus size: 56
65038102 AATGAATTGA
*
65038112 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCAAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
65038168 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
65038224 GACACTGTGTGTGTGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
65038280 GGCACTGTGTGTGCG
1 GACACTGTGTGTGCG
65038295 GATTTCGTTC
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 123 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (56 bp):
GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
Found at i:65038284 original size:28 final size:28
Alignment explanation
Indices: 65038141--65038294 Score: 105
Period size: 28 Copynumber: 5.5 Consensus size: 28
65038131 CTTTAACCGA
*
65038141 GCACTATGTGTGCAAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * ** * ** *
65038169 ACACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
65038197 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * * ** * ** *
65038225 ACACTGTGTGTGTGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
65038253 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
65038281 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
65038295 GATTTCGTTC
Statistics
Matches: 86, Mismatches: 36, Indels: 8
0.66 0.28 0.06
Matches are distributed among these distances:
27 2 0.02
28 82 0.95
29 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:65038354 original size:18 final size:18
Alignment explanation
Indices: 65038331--65038367 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
65038321 TAGGACGACG
65038331 GCATTGATTTGTGATAGT
1 GCATTGATTTGTGATAGT
65038349 GCATTGATTTGTGATAGT
1 GCATTGATTTGTGATAGT
65038367 G
1 G
65038368 TGTAAGACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.05, G:0.30, T:0.43
Consensus pattern (18 bp):
GCATTGATTTGTGATAGT
Found at i:65039463 original size:135 final size:135
Alignment explanation
Indices: 65039303--65039574 Score: 517
Period size: 135 Copynumber: 2.0 Consensus size: 135
65039293 AATTTGTGAA
*
65039303 GAATGTGCTTACCATGTGAATCCATCTTCAATTAATGAAGAATGTGCTTTGGAAATATTCGACCA
1 GAATGTGCTTACCATGTGAATCCATCTTCAATTAATGAAGAATATGCTTTGGAAATATTCGACCA
65039368 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
66 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
65039433 AGTTC
131 AGTTC
*
65039438 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATATGCTTTGGAAATATTCGACCA
1 GAATGTGCTTACCATGTGAATCCATCTTCAATTAATGAAGAATATGCTTTGGAAATATTCGACCA
*
65039503 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTAT
66 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
65039568 AGTTC
131 AGTTC
65039573 GA
1 GA
65039575 GATGAAGCTC
Statistics
Matches: 134, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 134 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (135 bp):
GAATGTGCTTACCATGTGAATCCATCTTCAATTAATGAAGAATATGCTTTGGAAATATTCGACCA
TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
AGTTC
Found at i:65044652 original size:13 final size:13
Alignment explanation
Indices: 65044582--65044814 Score: 60
Period size: 13 Copynumber: 17.5 Consensus size: 13
65044572 ATATATTTAT
*
65044582 TTTCATATAACTGA
1 TTTCATATAAC-CA
65044596 -TTCATATAACCA
1 TTTCATATAACCA
** ** *
65044608 TACCATATGTCTA
1 TTTCATATAACCA
*
65044621 TTTCCATATAACTGA
1 TTT-CATATAAC-CA
65044636 -TTCATATAACCA
1 TTTCATATAACCA
* * *
65044648 TTTCATTTATCTA
1 TTTCATATAACCA
** *
65044661 TTTTTGTATAACTGA
1 -TTTCATATAAC-CA
65044676 -TTCATATAACCA
1 TTTCATATAACCA
** * *
65044688 TACCATATATCTA
1 TTTCATATAACCA
65044701 TTTCCATATAACCA
1 TTT-CATATAACCA
* *
65044715 ATTCATATAACAA
1 TTTCATATAACCA
* * *
65044728 TTTCATTTATCTA
1 TTTCATATAACCA
***
65044741 TTTCTATATAATTG
1 TTTC-ATATAACCA
* * *
65044755 GTTCGTATAAGCA
1 TTTCATATAACCA
**
65044768 TTTCATATATTCA
1 TTTCATATAACCA
65044781 TTTTTCATATAACC-
1 --TTTCATATAACCA
* *
65044795 TATCCATACAACCA
1 T-TTCATATAACCA
65044809 TTTCAT
1 TTTCAT
65044815 TTATTCATTT
Statistics
Matches: 151, Mismatches: 55, Indels: 27
0.65 0.24 0.12
Matches are distributed among these distances:
12 4 0.03
13 101 0.67
14 34 0.23
15 12 0.08
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (13 bp):
TTTCATATAACCA
Found at i:65044663 original size:80 final size:79
Alignment explanation
Indices: 65044565--65044818 Score: 296
Period size: 80 Copynumber: 3.2 Consensus size: 79
65044555 ATCCAATGTT
* * *
65044565 CCATTTCATATATTTATTTTCATATAACTGATTCATATAACCATACCATATGTCTATTTCCATAT
1 CCATTTCATTTATCTATTTTCATATAACTGATTCATATAACCATACCATATATCTATTTCCATAT
65044630 AACTGATTCATATAA
66 AACT-ATTCATATAA
**
65044645 CCATTTCATTTATCTATTTTTGTATAACTGATTCATATAACCATACCATATATCTATTTCCATAT
1 CCATTTCATTTATCTATTTTCATATAACTGATTCATATAACCATACCATATATCTATTTCCATAT
*
65044710 AACCAATTCATATAA
66 AA-CTATTCATATAA
* * * * * ** *
65044725 CAATTTCATTTATCTA-TTTCTATATAATTGGTTCGTATAAGCATTTCATATAT-TCATTTTTCA
1 CCATTTCATTTATCTATTTTC-ATATAACTGATTCATATAACCATACCATATATCT-A-TTTCCA
* *
65044788 TATAACCTATCCATACAA
63 TATAA-CTATTCATATAA
65044806 CCATTTCATTTAT
1 CCATTTCATTTAT
65044819 TCATTTTTTC
Statistics
Matches: 150, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 4 0.03
80 113 0.75
81 33 0.22
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (79 bp):
CCATTTCATTTATCTATTTTCATATAACTGATTCATATAACCATACCATATATCTATTTCCATAT
AACTATTCATATAA
Found at i:65044730 original size:27 final size:27
Alignment explanation
Indices: 65044678--65044731 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
65044668 ATAACTGATT
* *
65044678 CATATAACCATACCATATATCTATTTC
1 CATATAACCATACCATATAACAATTTC
*
65044705 CATATAACCA-ATTCATATAACAATTTC
1 CATATAACCATA-CCATATAACAATTTC
65044732 ATTTATCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (27 bp):
CATATAACCATACCATATAACAATTTC
Found at i:65044764 original size:40 final size:40
Alignment explanation
Indices: 65044565--65044818 Score: 242
Period size: 40 Copynumber: 6.3 Consensus size: 40
65044555 ATCCAATGTT
* * *
65044565 CCATTTCATATATTTATTTTCATATAACTGATTCATATAA
1 CCATTTCATTTATCTATTTCCATATAACTGATTCATATAA
** * *
65044605 CCATACCATATGTCTATTTCCATATAACTGATTCATATAA
1 CCATTTCATTTATCTATTTCCATATAACTGATTCATATAA
***
65044645 CCATTTCATTTATCTATTTTTGTATAACTGATTCATATAA
1 CCATTTCATTTATCTATTTCCATATAACTGATTCATATAA
** * **
65044685 CCATACCATATATCTATTTCCATATAACCAATTCATATAA
1 CCATTTCATTTATCTATTTCCATATAACTGATTCATATAA
* * * * *
65044725 CAATTTCATTTATCTATTTCTATATAATTGGTTCGTATAA
1 CCATTTCATTTATCTATTTCCATATAACTGATTCATATAA
* * * * *
65044765 GCATTTCATATAT-TCATTTTTCATATAACCT-ATCCATACAA
1 CCATTTCATTTATCT-A-TTTCCATATAA-CTGATTCATATAA
65044806 CCATTTCATTTAT
1 CCATTTCATTTAT
65044819 TCATTTTTTC
Statistics
Matches: 169, Mismatches: 42, Indels: 5
0.78 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 141 0.83
41 26 0.15
42 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (40 bp):
CCATTTCATTTATCTATTTCCATATAACTGATTCATATAA
Found at i:65048923 original size:17 final size:18
Alignment explanation
Indices: 65048901--65048934 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
65048891 ATTCTGAGCC
65048901 GTGTGGG-CCACACGGGT
1 GTGTGGGCCCACACGGGT
65048918 GTGTGGGCCCACACGGG
1 GTGTGGGCCCACACGGG
65048935 CAGGGCACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.12, C:0.26, G:0.47, T:0.15
Consensus pattern (18 bp):
GTGTGGGCCCACACGGGT
Found at i:65061140 original size:21 final size:19
Alignment explanation
Indices: 65061104--65061142 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
65061094 AAAAAATTGA
*
65061104 AATTTATTTTAGTAATTTT
1 AATTTATTTTAATAATTTT
65061123 AATTTATATTTAAATAATTT
1 AATTTAT-TTT-AATAATTT
65061143 ATTTGAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 3 0.18
21 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
AATTTATTTTAATAATTTT
Found at i:65070285 original size:25 final size:25
Alignment explanation
Indices: 65070257--65070312 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
65070247 TTACTCACAC
* *
65070257 ACATATATCGGAATCTTATGTCATG
1 ACATATATCGAAATCCTATGTCATG
65070282 ACATATATCGAAATCCTATGTCATG
1 ACATATATCGAAATCCTATGTCATG
65070307 ACATAT
1 ACATAT
65070313 GTATCCTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (25 bp):
ACATATATCGAAATCCTATGTCATG
Found at i:65071673 original size:25 final size:25
Alignment explanation
Indices: 65071645--65071693 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
65071635 GATAAAATCC
*
65071645 TCCGAGTTGAATAACAATAAGCTCT
1 TCCGAGTAGAATAACAATAAGCTCT
**
65071670 TCCGAGTAGAATAACGGTAAGCTC
1 TCCGAGTAGAATAACAATAAGCTC
65071694 ATAAAAGCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (25 bp):
TCCGAGTAGAATAACAATAAGCTCT
Found at i:65075517 original size:23 final size:24
Alignment explanation
Indices: 65075464--65075518 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
65075454 AGCACATAAC
* *
65075464 CGGGAAGCTCACAAATAGCCATAT
1 CGGGAAGCCCACAAAGAGCCATAT
*
65075488 CGAGAAGCCCACAAAGAGCC-TAT
1 CGGGAAGCCCACAAAGAGCCATAT
65075511 CGGGAAGC
1 CGGGAAGC
65075519 TTACTTGGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.36, C:0.27, G:0.25, T:0.11
Consensus pattern (24 bp):
CGGGAAGCCCACAAAGAGCCATAT
Found at i:65075582 original size:25 final size:23
Alignment explanation
Indices: 65075531--65075616 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 23
65075521 ACTTGGCTAT
*
65075531 ATAACGGAAAGCTCATAAGAGCC
1 ATAACGGGAAGCTCATAAGAGCC
**
65075554 ATAATCGGGAAGCTCATGCGAGCC
1 ATAA-CGGGAAGCTCATAAGAGCC
* ** *
65075578 AATAACGGGTAGCTCCGAAGAGCT
1 -ATAACGGGAAGCTCATAAGAGCC
65075602 ATTAACGGGAAGCTC
1 A-TAACGGGAAGCTC
65075617 TGGATAGCCA
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
23 5 0.10
24 41 0.82
25 4 0.08
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.16
Consensus pattern (23 bp):
ATAACGGGAAGCTCATAAGAGCC
Found at i:65075750 original size:24 final size:25
Alignment explanation
Indices: 65075723--65075770 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
65075713 GGATGCTCTG
*
65075723 AAGAGCTAT-TAATGGGAAGCTCGC
1 AAGAACTATATAATGGGAAGCTCGC
65075747 AAGAACTATATAATGGGAAGCTCG
1 AAGAACTATATAATGGGAAGCTCG
65075771 AGAGGGCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.21
Consensus pattern (25 bp):
AAGAACTATATAATGGGAAGCTCGC
Found at i:65083005 original size:19 final size:19
Alignment explanation
Indices: 65082969--65083005 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
65082959 TTTTCTTCCA
*
65082969 GCAATCCAAATCTCTTTTG
1 GCAATCCAAATCTATTTTG
*
65082988 GCAATCCAAATTTATTTT
1 GCAATCCAAATCTATTTT
65083006 ATAATAAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (19 bp):
GCAATCCAAATCTATTTTG
Found at i:65083036 original size:17 final size:18
Alignment explanation
Indices: 65083000--65083047 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
65082990 AATCCAAATT
65083000 TATTTTATAATAAGATAA
1 TATTTTATAATAAGATAA
*
65083018 TATTTTATAATGA-ATAA
1 TATTTTATAATAAGATAA
* *
65083035 TATCTTAAAATAA
1 TATTTTATAATAA
65083048 ACTTAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (18 bp):
TATTTTATAATAAGATAA
Found at i:65084991 original size:39 final size:39
Alignment explanation
Indices: 65084920--65084996 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
65084910 ATTATGTGTT
*
65084920 AAATGGATTATGAAACAGTTATACGAAATGTTTATATGG
1 AAATAGATTATGAAACAGTTATACGAAATGTTTATATGG
* *
65084959 AAATAGATATATG-AACAGTTATATGAAGTGTTTATATG
1 AAATAGAT-TATGAAACAGTTATACGAAATGTTTATATG
65084997 AAGTATTTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 30 0.88
40 4 0.12
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (39 bp):
AAATAGATTATGAAACAGTTATACGAAATGTTTATATGG
Found at i:65090149 original size:22 final size:22
Alignment explanation
Indices: 65090122--65090164 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
65090112 CAAATACATA
65090122 AAATTTATTATTTAATTTCCCT
1 AAATTTATTATTTAATTTCCCT
65090144 AAATTTATTATTTAATTTCCC
1 AAATTTATTATTTAATTTCCC
65090165 CCATTAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (22 bp):
AAATTTATTATTTAATTTCCCT
Found at i:65103247 original size:28 final size:28
Alignment explanation
Indices: 65103207--65103264 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
65103197 TATACGATAT
65103207 GTGGCTCAAGAGTGTGTTCCTTGATTAA
1 GTGGCTCAAGAGTGTGTTCCTTGATTAA
*
65103235 GTGGCTCGAGAGTGTGTTCCTTGATTAA
1 GTGGCTCAAGAGTGTGTTCCTTGATTAA
65103263 GT
1 GT
65103265 ACCCTAATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.19, C:0.14, G:0.31, T:0.36
Consensus pattern (28 bp):
GTGGCTCAAGAGTGTGTTCCTTGATTAA
Found at i:65103533 original size:22 final size:23
Alignment explanation
Indices: 65103507--65103552 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
65103497 CAACCAAACC
65103507 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
65103529 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
65103552 A
1 A
65103553 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:65103558 original size:23 final size:23
Alignment explanation
Indices: 65103514--65103558 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
65103504 ACCAATTCAA
*
65103514 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
65103537 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
65103559 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:65110965 original size:27 final size:27
Alignment explanation
Indices: 65110927--65110993 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
65110917 TGACACTAAG
65110927 TGGTGTGTAGGGAATATAATACCTATA
1 TGGTGTGTAGGGAATATAATACCTATA
65110954 TGGTGTGTAGGGAATATAATACCTATA
1 TGGTGTGTAGGGAATATAATACCTATA
65110981 TGGTGTGTAGGGA
1 TGGTGTGTAGGGA
65110994 TGGTTGGAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.30, C:0.06, G:0.31, T:0.33
Consensus pattern (27 bp):
TGGTGTGTAGGGAATATAATACCTATA
Found at i:65123813 original size:49 final size:50
Alignment explanation
Indices: 65123744--65123940 Score: 227
Period size: 50 Copynumber: 3.9 Consensus size: 50
65123734 ATCTATTGTG
* *
65123744 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
65123794 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
65123844 CGATCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
65123894 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-TTCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCAGATA
65123941 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 41 0.34
50 43 0.36
51 36 0.30
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:65123973 original size:101 final size:100
Alignment explanation
Indices: 65123751--65123940 Score: 254
Period size: 101 Copynumber: 1.9 Consensus size: 100
65123741 GTGAGGTCAC
* * * * *
65123751 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAATAATAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGT
* * *
65123816 GTAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCGTACCAGATAACTTCGATCAA
* * * *
65123851 GTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAATAATAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTACTAAG
*
65123916 TGCAGGCTACTATTCGTACCAGATA
65 TGCAGGCTACTATGCGTACCAGATA
65123941 GCTTTGGCTA
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 38 0.48
101 41 0.52
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
GTGTGTAATAATAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCAGATAACTTCGATCAA
Found at i:65127852 original size:40 final size:40
Alignment explanation
Indices: 65127793--65128004 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
65127783 CATTTGAATG
* *
65127793 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
65127833 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
65127873 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
65127913 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
65127953 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
65127993 ATATCC-GGCTAA
1 ATATCCGGGCTAA
65128005 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 10 0.07
40 133 0.90
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:65127930 original size:80 final size:80
Alignment explanation
Indices: 65127797--65128004 Score: 337
Period size: 80 Copynumber: 2.6 Consensus size: 80
65127787 TGAATGATAT
*
65127797 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
65127862 TGCGAGTTGCTATAC
66 TGCGAGTTGATATAC
*
65127877 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
65127942 TGCGAGTTGATATAT
66 TGCGAGTTGATATAC
* * * *
65127957 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
65128005 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 6 0.05
80 113 0.95
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATAC
Found at i:65132158 original size:39 final size:39
Alignment explanation
Indices: 65132114--65132427 Score: 522
Period size: 39 Copynumber: 8.1 Consensus size: 39
65132104 ATGCAAGACA
65132114 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
65132153 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
65132192 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
65132231 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
65132270 CTGGAAATATATCGGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
65132309 CTGGAAATGTATCCGGGCTAAAGTCCCGCA-GCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
65132347 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
** *
65132386 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
65132425 CTG
1 CTG
65132428 ATAATATAAT
Statistics
Matches: 255, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 37 0.15
39 218 0.85
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:65141583 original size:47 final size:46
Alignment explanation
Indices: 65141286--65141590 Score: 292
Period size: 48 Copynumber: 6.4 Consensus size: 46
65141276 CCGCTCGTCA
65141286 CAATATATACA-TTTCACATTC-T-ACTATCCGGCC-TTAGGCCTTTAT
1 CAATATATACACTTTCACATTCATCAC-AT-CGGCCATTAGGCC-TTAT
65141331 CACATATATACAACTTTCACAATTCATCACAGTCGGCCGATTAGGGCCTTAT
1 CA-ATATATAC-ACTTTCAC-ATTCATCACA-TCGGCC-ATTA-GGCCTTAT
*
65141383 C-ATAT-TACACTTTCACATTACATGCACATCGGCCATTAGGCTCATACT
1 CAATATATACACTTTCACATT-CAT-CACATCGGCCATTAGGC-CTTA-T
* *
65141431 ACTAATA-AT-CACTTTCTCATTCATCCACATC-GCTATTAGGCCTTAT
1 -C-AATATATACACTTTCACATTCAT-CACATCGGCCATTAGGCCTTAT
65141477 CACAATATATACAC-TTCACA-TCATTCACATCGGCCATCTAGGCCTTAT
1 --CAATATATACACTTTCACATTCA-TCACATCGGCCAT-TAGGCCTTAT
65141525 CACATATATACACTTTCACATTCATCACATCGGCCATTAGCGCCTTAAT
1 CA-ATATATACACTTTCACATTCATCACATCGGCCATTAG-GCCTT-AT
65141574 CAATA-ATACACTTTCAC
1 CAATATATACACTTTCAC
65141591 GTATAGCACC
Statistics
Matches: 224, Mismatches: 7, Indels: 56
0.78 0.02 0.20
Matches are distributed among these distances:
45 2 0.01
46 27 0.12
47 53 0.24
48 73 0.33
49 28 0.12
50 22 0.10
51 7 0.03
52 8 0.04
53 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (46 bp):
CAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:65141590 original size:95 final size:94
Alignment explanation
Indices: 65141314--65141590 Score: 293
Period size: 95 Copynumber: 2.9 Consensus size: 94
65141304 TTCTACTATC
65141314 CGGCC-TTAGGCCTTTATCACATATATACAACTTTCACAATTCATCACAGTCGGCCGATTAGGGC
1 CGGCCATTAGGCC-TTATCACATATATAC-ACTTTCAC-ATTCATCACA-TCGGCC-ATTA-GGC
*
65141378 CTTATC-ATATTACACTTTCACATTACATGCACAT
60 CTTATCAATAATACACTTTCACATTACATGCACAT
* * *
65141412 CGGCCATTAGG-CTCAT-AC-TACTAATAATCACTTTCTCATTCATCCACATC-GCTATTAGGCC
1 CGGCCATTAGGCCTTATCACATA-T-AT-A-CACTTTCACATTCAT-CACATCGGCCATTAGGCC
*
65141473 TTATCACAATATATACAC-TTCACA-T-CATTCACAT
61 TTAT--CAATA-ATACACTTTCACATTACATGCACAT
65141507 CGGCCATCTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCGCCTTA
1 CGGCCAT-TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-GCCTT-
65141572 ATCAATAATACACTTTCAC
63 ATCAATAATACACTTTCAC
65141591 GTATAGCACC
Statistics
Matches: 153, Mismatches: 8, Indels: 39
0.76 0.04 0.19
Matches are distributed among these distances:
94 20 0.13
95 52 0.34
96 17 0.11
97 30 0.20
98 26 0.17
99 8 0.05
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (94 bp):
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
AATAATACACTTTCACATTACATGCACAT
Found at i:65146628 original size:19 final size:20
Alignment explanation
Indices: 65146598--65146636 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
65146588 GATGCTATAC
65146598 AATACAAACCATTTAACTTA
1 AATACAAACCATTTAACTTA
*
65146618 AATAC-AACCATTTACCTTA
1 AATACAAACCATTTAACTTA
65146637 CTCAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
AATACAAACCATTTAACTTA
Found at i:65152461 original size:136 final size:135
Alignment explanation
Indices: 65152313--65152557 Score: 349
Period size: 137 Copynumber: 1.8 Consensus size: 135
65152303 ACAAAAATAT
* *
65152313 AATTGTATATA-TTTTACCGTAATTTATTAATATGTTAAACAGTTATAGTAATTAA-TTTG-GT-
1 AATTGTATATATTTTTACCGGAA--T-TTAAT-TATTAAACAGTTATA-TAATTAATTTTGTGTC
* *
65152374 CAAATA-T-AAAAGACATGGAAATTAATATTCTTTTGAGGAAAGAATATAATAATATATATAGCA
61 CAAAAATTAAAAAGACATGGAAATTAATATCCTTTT--GGAAAGAATATAATAATATATATAGCA
65152437 TTAATGTTCATA
124 TTAATGTTCATA
65152449 AATTGTATATATTTTTACCGGAATTTAATTATTAAACAGTTATATAATTAATTTTGTGTCCAAAA
1 AATTGTATATATTTTTACCGGAATTTAATTATTAAACAGTTATATAATTAATTTTGTGTCCAAAA
65152514 ATTAAAAAGACATGGAAATTAATATCCTTTTGGAAAGAATATAA
66 ATTAAAAAGACATGGAAATTAATATCCTTTTGGAAAGAATATAA
65152558 ATTCCTTTTT
Statistics
Matches: 99, Mismatches: 4, Indels: 13
0.85 0.03 0.11
Matches are distributed among these distances:
132 7 0.07
133 18 0.18
134 7 0.07
135 19 0.19
136 12 0.12
137 36 0.36
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (135 bp):
AATTGTATATATTTTTACCGGAATTTAATTATTAAACAGTTATATAATTAATTTTGTGTCCAAAA
ATTAAAAAGACATGGAAATTAATATCCTTTTGGAAAGAATATAATAATATATATAGCATTAATGT
TCATA
Found at i:65155828 original size:47 final size:47
Alignment explanation
Indices: 65155694--65156046 Score: 504
Period size: 47 Copynumber: 7.5 Consensus size: 47
65155684 GTGTGTATAC
65155694 GTGAAAGTGTATATATGGTGATAAGGCCTAGATGGCCGATGTGATGGAAT
1 GTGAAAGTGTATATAT-GTGATAAGGCCTA-ATGGCCGATGTGAT-GAAT
*
65155744 GTGAAAGTGT-TATATGTGATAAGTGGGCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAA--GGCCTAATGGCCGATGTGATGAAT
*
65155792 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65155839 G-GAAAGTGTATATATGTGATAAGGCCATAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCC-TAATGGCCGATGTGATGAAT
*
65155886 GT-AAAGTGTATATATG-AATAA-GCCT-ATGGCCGATTGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAAT
65155930 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
65155977 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG-AT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65156023 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
65156047 TCCCGAAGGC
Statistics
Matches: 278, Mismatches: 15, Indels: 24
0.88 0.05 0.08
Matches are distributed among these distances:
43 8 0.03
44 13 0.05
45 17 0.06
46 56 0.20
47 109 0.39
48 29 0.10
49 31 0.11
50 15 0.05
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:65155950 original size:138 final size:141
Alignment explanation
Indices: 65155694--65156046 Score: 495
Period size: 138 Copynumber: 2.5 Consensus size: 141
65155684 GTGTGTATAC
65155694 GTGAAAGTGTATATATGGTGATAAGGCCTAGATGGCCGATGTGATGGAATGTGAAAGTGT-TATA
1 GTGAAAGTGTATATAT-GTGATAAGGCCTA-ATGGCCGATGTGAT-GAATGTGAAAGTGTATATA
* *
65155758 TGTGATAAGTGGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
63 TGTAATAA--GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
65155823 AGCCGATGTGATGAAT
126 AGCCGATGTGATGAAT
65155839 G-GAAAGTGTATATATGTGATAAGGCCATAATGGCCGATGTGATGAATGT-AAAGTGTATATATG
1 GTGAAAGTGTATATATGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
65155902 -AATAA-GCCT-ATGGCCGATTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
65 TAATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
65155964 CGATGTGATGAAT
129 CGATGTGATGAAT
* * * * * * *
65155977 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG-ATGTGAAAGTGTATAAATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
65156041 GATAAG
66 AATAAG
65156047 TCCCGAAGGC
Statistics
Matches: 190, Mismatches: 11, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
137 12 0.06
138 86 0.45
139 27 0.14
141 11 0.06
142 12 0.06
143 25 0.13
144 16 0.08
145 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (141 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
AATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
ATGTGATGAAT
Found at i:65156043 original size:185 final size:189
Alignment explanation
Indices: 65155697--65156046 Score: 516
Period size: 185 Copynumber: 1.9 Consensus size: 189
65155687 TGTATACGTG
*
65155697 AAAGTGTATATATGGTGATAAGGCCTAGATGGCCGATGTGATGGAATGTGAAAGTGTTATATGTG
1 AAAGTGTATATATGGTAATAAGGCCTA-ATGGCCGATGTGATGGAATGTGAAAGTGTTATATGTG
* * *
65155762 ATAAGTGGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
65 ATAAG-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCC
* * *
65155827 GATGTGATGAATGGAAAGTGTATATATGTGATAAGGCCATAATGGCCGATGTGATGAATGT
129 AACGTGATGAATGGAAAGTGTATAAATGTGATAAGGCCATAATGGCCGATGTGATGAATGT
65155888 AAAGTGTATATAT-G-AATAA-GCCT-ATGGCCGATTGTGAT-GAATGTGAAAGTGTATATATGT
1 AAAGTGTATATATGGTAATAAGGCCTAATGGCCGA-TGTGATGGAATGTGAAAGTGT-TATATGT
* * *
65155948 GATAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
64 GATAAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCC
65156012 AACGTGATG-ATGTGAAAGTGTATAAATGTGATAAG
129 AACGTGATGAATG-GAAAGTGTATAAATGTGATAAG
65156047 TCCCGAAGGC
Statistics
Matches: 146, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
184 3 0.02
185 81 0.55
186 22 0.15
187 18 0.12
188 4 0.03
189 4 0.03
190 1 0.01
191 13 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (189 bp):
AAAGTGTATATATGGTAATAAGGCCTAATGGCCGATGTGATGGAATGTGAAAGTGTTATATGTGA
TAAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAA
CGTGATGAATGGAAAGTGTATAAATGTGATAAGGCCATAATGGCCGATGTGATGAATGT
Found at i:65156215 original size:36 final size:37
Alignment explanation
Indices: 65156160--65156237 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
65156150 CCGAGCTCTA
* * *
65156160 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
*
65156196 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
65156233 AAGAC
1 AAGAC
65156238 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 20 0.54
37 17 0.46
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:65157686 original size:119 final size:121
Alignment explanation
Indices: 65157431--65157701 Score: 397
Period size: 119 Copynumber: 2.3 Consensus size: 121
65157421 GAGAATTGAG
* *
65157431 AGTGATGTAT-CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTTGATGTATCCGGGCTAAGTCTC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTTGATGTATCCGGACTAAGTCTC
** *
65157495 GAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
66 GAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
* *
65157551 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAG-TGATGTATCCGGACTAAGT-TC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTTGATGTATCCGGACTAAGTCT-
* *
65157614 CGAAGAGCATTCGTGCTAGTGAT-TATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
65 CGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
* * *
65157670 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
65157702 ATCATGCTGG
Statistics
Matches: 137, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
119 57 0.42
120 50 0.36
121 30 0.22
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (121 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTTGATGTATCCGGACTAAGTCTC
GAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
Found at i:65157713 original size:40 final size:40
Alignment explanation
Indices: 65157431--65157701 Score: 402
Period size: 40 Copynumber: 6.8 Consensus size: 40
65157421 GAGAATTGAG
65157431 AGTGATGTAT-CGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65157470 AGTTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AG-TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65157511 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65157551 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65157591 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
65157631 AGTGAT-TATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
65157670 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
65157702 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 34 0.16
40 148 0.70
41 30 0.14
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65161566 original size:47 final size:47
Alignment explanation
Indices: 65161433--65161776 Score: 510
Period size: 47 Copynumber: 7.5 Consensus size: 47
65161423 GTGTGTATAC
*
65161433 GTGAAAGTG--TATATGTGATAA-GCCTAATGGCCGATGTGATTAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65161477 GTGAAAGTGTATATATATG-TAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
65161523 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65161570 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65161617 GTGAAAGTGTATATA--TGATAAGG-CTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65161661 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA-T
* * * * * *
65161709 GTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCAACG-GATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65161754 GTG-AAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
65161777 TCCCGAAGGC
Statistics
Matches: 276, Mismatches: 15, Indels: 17
0.90 0.05 0.06
Matches are distributed among these distances:
44 60 0.22
45 17 0.06
46 60 0.22
47 118 0.43
48 21 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:65161704 original size:138 final size:139
Alignment explanation
Indices: 65161433--65161728 Score: 503
Period size: 138 Copynumber: 2.1 Consensus size: 139
65161423 GTGTGTATAC
*
65161433 GTGAAAGTG--TATATGTGATAAGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATATATATG
1 GTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA-G
65161496 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
65 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
65161561 ATGATGAA-T
130 ATGATGAATT
65161570 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-G
1 GTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAG
*
65161634 ATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
65 -TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
65161698 TGTGATGAATT
129 TATGATGAATT
65161709 GTGAAAGTGTATATATGTGA
1 GTGAAAGTGTATATATGTGA
65161729 CAGGCCGAGT
Statistics
Matches: 151, Mismatches: 3, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
137 9 0.06
138 66 0.44
139 38 0.25
140 38 0.25
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (139 bp):
GTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATA
TGATGAATT
Found at i:65161734 original size:138 final size:138
Alignment explanation
Indices: 65161433--65161765 Score: 491
Period size: 138 Copynumber: 2.4 Consensus size: 138
65161423 GTGTGTATAC
*
65161433 GTGAAAGTG--TATATGTGATAA-GCCTAATGGCCGATGTGATTAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA-
65161495 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
64 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
65161560 TATGATGAAT
129 TATGATGAAT
65161570 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-G
1 GTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAG
*
65161634 ATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
65 -TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
65161698 TGTGATGAATT
129 TATGATGAA-T
* * * * * *
65161709 GTGAAAGTGTATATATGTGACAGGCCGAGTGGCCAACG-GATGGATGTG-AAGTGTATA
1 GTGAAAGTGTATATATGTGAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
65161766 AATGTGATAA
Statistics
Matches: 182, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
136 9 0.05
137 18 0.10
138 79 0.43
139 38 0.21
140 38 0.21
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (138 bp):
GTGAAAGTGTATATATGTGAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATA
TGATGAAT
Found at i:65161758 original size:184 final size:183
Alignment explanation
Indices: 65161433--65161776 Score: 532
Period size: 184 Copynumber: 1.9 Consensus size: 183
65161423 GTGTGTATAC
* *
65161433 GTGAAAGTGTATATGTGATAAGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATATATATGTA
1 GTGAAAGTGTATATATGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTA
* *
65161498 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATAT
66 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATAG
*
65161563 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
131 GATGAATGTG-AAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
65161617 GTGAAAGTGTATATATGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 GTGAAAGTGTATATATGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG-T
* * *
65161682 AAGGCCTAATGGCCGATGTGATGAATTGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCC-A-
65 AAGGCCTAATGGCCGATGTGATGAA-TGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGAT
*
65161744 ACGGATGGATGTGAAGTGTATAAATGTGATAAG
129 A-GGATGAATGTGAAGTGTATAAATGTGATAAG
65161777 TCCCGAAGGC
Statistics
Matches: 146, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
183 20 0.14
184 69 0.47
185 36 0.25
186 21 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (183 bp):
GTGAAAGTGTATATATGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTA
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATAG
GATGAATGTGAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:65161960 original size:36 final size:36
Alignment explanation
Indices: 65161892--65161969 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
65161882 CCGAGCTCTA
* * * *
65161892 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGA-CCGATAACTACGAGTGGAGATTATGTCCGGGT
*
65161929 AAGACCGATAACTTCGAGTGGAGATTATGTCCGGGT
1 AAGACCGATAACTACGAGTGGAGATTATGTCCGGGT
65161965 AAGAC
1 AAGAC
65161970 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 32 0.89
37 4 0.11
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (36 bp):
AAGACCGATAACTACGAGTGGAGATTATGTCCGGGT
Found at i:65163214 original size:40 final size:40
Alignment explanation
Indices: 65163170--65163426 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
65163160 GAGAATTGAG
*
65163170 AGTGATGTATCCGGGCTAAGTC-CGGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCTC-GAAGAGCATTCGTGCT
65163210 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
65163250 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
65163290 AGTG-TGTATCCGGGCTAAGTCTCG-AGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
65163328 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** *
65163368 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * *
65163408 GGTGTTTATATCCGGGCTA
1 AGTG-ATGTATCCGGGCTA
65163427 GGTTTTCCGG
Statistics
Matches: 198, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
38 19 0.10
39 37 0.19
40 129 0.65
41 13 0.07
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:65163386 original size:118 final size:120
Alignment explanation
Indices: 65163170--65163426 Score: 360
Period size: 118 Copynumber: 2.1 Consensus size: 120
65163160 GAGAATTGAG
* * *
65163170 AGTGATGTATCCGGGCTAAGTCCGGAAGAGCATTTGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGTTGTATCCGGGCTAAGTCCGGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCG
* ** *
65163235 AAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTAATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
65163290 AGTG-TGTATCCGGGCTAAGTCTC-G-AGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-TC
1 AGTGTTGTATCCGGGCTAAGTC-CGGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCT-
* *
65163351 CGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
64 CGAAGAGCATTCGTGCTAGTAATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
* *
65163408 GGTGTTTATATCCGGGCTA
1 AGTG-TTGTATCCGGGCTA
65163427 GGTTTTCCGG
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
117 1 0.01
118 87 0.71
119 18 0.15
120 17 0.14
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (120 bp):
AGTGTTGTATCCGGGCTAAGTCCGGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCG
AAGAGCATTCGTGCTAGTAATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
Found at i:65164729 original size:40 final size:40
Alignment explanation
Indices: 65164613--65164878 Score: 371
Period size: 39 Copynumber: 6.7 Consensus size: 40
65164603 GAGAATTGAG
*
65164613 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65164653 AGTGAT-TAT-CGGGCTAAGTCTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTC-CCGAAGAGCATTCGTGCT
*
65164692 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65164732 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65164771 AGTGATGTATCCGGACTAAGT-TCGAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCG-AAGAGCATTCGTGCT
* * **
65164811 AGTGATATATCCGTGCTAAACCCCG-AGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
65164850 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGA
65164879 CAATCATGCT
Statistics
Matches: 204, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
38 11 0.05
39 99 0.49
40 81 0.40
41 13 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65164756 original size:79 final size:78
Alignment explanation
Indices: 65164613--65164878 Score: 358
Period size: 79 Copynumber: 3.4 Consensus size: 78
65164603 GAGAATTGAG
*
65164613 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATTAT-CGGGCTAAGTCTCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATTATCCGGGCTAAG--TCCG
65164677 AAGAGCATTCGTGCT
64 AAGAGCATTCGTGCT
*
65164692 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT-TATCCGGGCTAAGTCCGA
65164757 AGAGCATTCGTGCT
65 AGAGCATTCGTGCT
* * * **
65164771 AGTGATGTATCCGGACTAAGT-TCGAAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCC
1 AGTGATGTATCCGGGCTAAGTCCCG-AAGAGCATTCGTGCTAGTGAT-TATCCGGGCT-AAGTCC
65164835 G-AGAGCATTCGTGCT
63 GAAGAGCATTCGTGCT
* * * *
65164850 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGA
65164879 CAATCATGCT
Statistics
Matches: 167, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.01
79 146 0.87
80 10 0.06
81 9 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATTATCCGGGCTAAGTCCGAA
GAGCATTCGTGCT
Found at i:65168740 original size:47 final size:47
Alignment explanation
Indices: 65168615--65168965 Score: 557
Period size: 47 Copynumber: 7.5 Consensus size: 47
65168605 GTGTGTATAC
*
65168615 GTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATTAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65168660 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65168709 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65168756 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65168803 GTGAAAGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65168848 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
65168895 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGGGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65168942 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
65168966 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
45 54 0.19
47 188 0.66
49 44 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:65168867 original size:139 final size:140
Alignment explanation
Indices: 65168615--65168965 Score: 546
Period size: 139 Copynumber: 2.5 Consensus size: 140
65168605 GTGTGTATAC
*
65168615 GTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA-
65168678 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
63 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
65168743 CGATATGATGAAT
128 CGATATGATGAAT
65168756 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TG
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTG
65168820 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
66 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
*
65168885 TGTGATGAAT
131 TATGATGAAT
* * * * * * * * *
65168895 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGGGATGGATGTGAAAGTGTATAAATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GT
65168960 GATAAG
65 GATAAG
65168966 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
139 129 0.66
141 22 0.11
143 44 0.23
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTG
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
TATGATGAAT
Found at i:65169153 original size:37 final size:37
Alignment explanation
Indices: 65169084--65169162 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
65169074 CCGAGCTCTA
* * * *
65169084 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGAGTGGAGATTATGTCCGGGT
*
65169121 AAGACCCGATAACTTCGAGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGAGTGGAGATTATGTCCGGGT
65169158 AAGAC
1 AAGAC
65169163 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGAGTGGAGATTATGTCCGGGT
Found at i:65170643 original size:40 final size:40
Alignment explanation
Indices: 65170361--65170631 Score: 409
Period size: 40 Copynumber: 6.8 Consensus size: 40
65170351 GAGAATTGAG
*
65170361 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65170401 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65170441 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65170481 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65170521 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
65170560 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
65170600 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
65170632 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 33 0.15
40 180 0.85
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65170995 original size:47 final size:47
Alignment explanation
Indices: 65170921--65171384 Score: 797
Period size: 47 Copynumber: 9.9 Consensus size: 47
65170911 GTGTGTGAAG
65170921 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
65170968 TGGCCGATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
65171015 TGGCCGATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
65171062 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
65171111 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
65171158 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
65171205 TGGCCGATGTGATGAATGTGAAAGTGTATATAT-T-ATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
65171250 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * *
65171297 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * *
65171344 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65171385 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
45 44 0.11
46 2 0.01
47 306 0.77
49 47 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
Found at i:65171177 original size:143 final size:141
Alignment explanation
Indices: 65170921--65171384 Score: 797
Period size: 143 Copynumber: 3.3 Consensus size: 141
65170911 GTGTGTGAAG
65170921 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
65170986 TGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACGTGTATATATGTG
66 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
65171051 ATAAGGCCTAA
131 ATAAGGCCTAA
65171062 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
65171127 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
64 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
65171192 TGATAAGGCCTAA
129 TGATAAGGCCTAA
65171205 TGGCCGATGTGATGAATGTGAAAGTGTATATAT-T-ATAAGGCCTAATGGCCGATGTGATGAATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
65171268 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
66 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * *
65171333 ACAGGGCCGAG
131 ATAAGGCCTAA
* * * *
65171344 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65171385 TCCCGAAGGG
Statistics
Matches: 307, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
139 129 0.42
140 2 0.01
141 38 0.12
143 138 0.45
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
ATAAGGCCTAA
Found at i:65171559 original size:37 final size:37
Alignment explanation
Indices: 65171503--65171581 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
65171493 CCGAGCTCTA
* * *
65171503 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
65171540 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
65171577 AAGAC
1 AAGAC
65171582 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:65180577 original size:20 final size:20
Alignment explanation
Indices: 65180552--65180591 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
65180542 ATTGGGCCTT
65180552 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
65180572 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
65180592 CTCATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:65187491 original size:5 final size:5
Alignment explanation
Indices: 65187477--65187548 Score: 54
Period size: 5 Copynumber: 14.4 Consensus size: 5
65187467 TGTAAAGATT
* * * * * * * *
65187477 ATATC TTATC ATATC ATAAC ATATT GTAGC ATATC ATATC ATATT GTAAC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
* *
65187527 ATAGC ATATC ATATT ATATC AT
1 ATATC ATATC ATATC ATATC AT
65187549 GTCCTGCCCC
Statistics
Matches: 48, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.40
Consensus pattern (5 bp):
ATATC
Found at i:65187509 original size:20 final size:20
Alignment explanation
Indices: 65187486--65187541 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
65187476 TATATCTTAT
* *
65187486 CATATCATAACATATTGTAG
1 CATATCATATCATATTGTAA
65187506 CATATCATATCATATTGTAA
1 CATATCATATCATATTGTAA
*
65187526 CATAGCATATCATATT
1 CATATCATATCATATT
65187542 ATATCATGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (20 bp):
CATATCATATCATATTGTAA
Found at i:65187792 original size:7 final size:7
Alignment explanation
Indices: 65187780--65187829 Score: 66
Period size: 7 Copynumber: 7.0 Consensus size: 7
65187770 GCATATTATA
65187780 ATCATAT
1 ATCATAT
65187787 ATCATAT
1 ATCATAT
65187794 ATCATACAT
1 ATCAT--AT
*
65187803 AT-TTAT
1 ATCATAT
65187809 ATCATAT
1 ATCATAT
65187816 ATCATAT
1 ATCATAT
65187823 ATCATAT
1 ATCATAT
65187830 GGCATGCATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 4 0.11
7 29 0.76
8 1 0.03
9 4 0.11
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (7 bp):
ATCATAT
Found at i:65187803 original size:29 final size:29
Alignment explanation
Indices: 65187771--65187828 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
65187761 AAAACACATG
65187771 CATA-TTATAATCATATATCATATATCATA
1 CATATTTAT-ATCATATATCATATATCATA
65187800 CATATTTATATCATATATCATATATCATA
1 CATATTTATATCATATATCATATATCATA
65187829 TGGCATGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (29 bp):
CATATTTATATCATATATCATATATCATA
Found at i:65190013 original size:19 final size:19
Alignment explanation
Indices: 65189986--65190113 Score: 219
Period size: 19 Copynumber: 6.9 Consensus size: 19
65189976 ATAATCTTCA
65189986 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
65190005 ATGAGATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65190024 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65190042 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65190061 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65190078 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65190096 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
65190114 AGATATGATT
Statistics
Matches: 103, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
17 16 0.16
18 34 0.33
19 53 0.51
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:65190033 original size:37 final size:37
Alignment explanation
Indices: 65189986--65190113 Score: 208
Period size: 37 Copynumber: 3.5 Consensus size: 37
65189976 ATAATCTTCA
65189986 ATGATATGCAATCTTAGATATGAGATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-ATGCAATCTTAGAT
65190024 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-ATGCAATCTTAGAT
*
65190061 ATGATA--CAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATGCAATCTTAGAT
65190096 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
65190114 AGATATGATT
Statistics
Matches: 85, Mismatches: 2, Indels: 7
0.90 0.02 0.07
Matches are distributed among these distances:
35 19 0.22
36 15 0.18
37 46 0.54
38 5 0.06
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATGCAATCTTAGAT
Found at i:65190076 original size:54 final size:55
Alignment explanation
Indices: 65189986--65190113 Score: 231
Period size: 54 Copynumber: 2.3 Consensus size: 55
65189976 ATAATCTTCA
*
65189986 ATGATATGCAATCTTAGATATGAGATGCAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATAT-AGATACAATCTTAGATATGATTGCAATCTTAGAT
65190042 ATGATATGCAATCTTAGATAT-GATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATAGATACAATCTTAGATATGATTGCAATCTTAGAT
65190096 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
65190114 AGATATGATT
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
54 50 0.70
56 21 0.30
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (55 bp):
ATGATATGCAATCTTAGATATAGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:65190139 original size:22 final size:22
Alignment explanation
Indices: 65189986--65190136 Score: 112
Period size: 19 Copynumber: 7.8 Consensus size: 22
65189976 ATAATCTTCA
65189986 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
65190005 ATGAGATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65190024 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65190042 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65190061 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65190078 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65190096 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
65190118 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
65190137 GATTTAATTT
Statistics
Matches: 120, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
17 16 0.13
18 34 0.28
19 50 0.42
22 8 0.07
23 12 0.10
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:65195743 original size:11 final size:10
Alignment explanation
Indices: 65195727--65195785 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 10
65195717 CTTCTATTTC
65195727 AAAAAAAAAGG
1 AAAAAAAAA-G
65195738 AAAAAAAAAG
1 AAAAAAAAAG
65195748 AAAAAGAGAAA-
1 AAAAA-A-AAAG
65195759 AATAAAATAAA-
1 AA-AAAA-AAAG
*
65195770 AATAAAAAAG
1 AAAAAAAAAG
65195780 AAAAAA
1 AAAAAA
65195786 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
9 3 0.07
10 14 0.34
11 18 0.44
12 6 0.15
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:65197271 original size:46 final size:46
Alignment explanation
Indices: 65197221--65197393 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
65197211 TGGTTGAGCA
* *
65197221 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
65197267 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
65197314 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
65197360 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65197394 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:65197377 original size:93 final size:93
Alignment explanation
Indices: 65197218--65197388 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
65197208 GGATGGTTGA
* *
65197218 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
65197283 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** *
65197311 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65197376 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
65197389 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65199132 original size:44 final size:44
Alignment explanation
Indices: 65199075--65199373 Score: 283
Period size: 44 Copynumber: 6.8 Consensus size: 44
65199065 GATCCAAGAT
* *
65199075 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAACA
* *
65199119 GATTTGGCATCTCTGTATTGGT-AGAGAGCAGATCGAAAATAACA
1 GATTTGGCATCTCTGTATT-GTCAGGGAGCAGATCGAAGATAACA
*
65199163 GATTTGGCATCTCTGTATTGGT-AGGGAGCAGATCGAAGACATAACT
1 GATTTGGCATCTCTGTATT-GTCAGGGAGCAGATCGAAG--ATAACA
* * * * * * *
65199209 GATTTGGCTTTCACATGT-TT-ACATTGAAGCAAATCCAAGAT----
1 GATTTGGC-ATCTC-TGTATTGTCA-GGGAGCAGATCGAAGATAACA
* * *
65199250 GATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAACA
* * * *
65199294 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGCA
1 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAACA
*
65199338 GATTTGGCGTCTCTGTATTGGT-AGGGAGCAGATCGA
1 GATTTGGCATCTCTGTATT-GTCAGGGAGCAGATCGA
65199374 GGACATAGCT
Statistics
Matches: 211, Mismatches: 30, Indels: 28
0.78 0.11 0.10
Matches are distributed among these distances:
39 3 0.01
40 17 0.08
41 10 0.05
44 143 0.68
45 5 0.02
46 14 0.07
47 16 0.08
48 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAACA
Found at i:65199279 original size:87 final size:87
Alignment explanation
Indices: 65199070--65199724 Score: 600
Period size: 87 Copynumber: 7.5 Consensus size: 87
65199060 AAATAGATCC
* * *
65199070 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--AT-GACAGATTTGGC-ATCT
1 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGACATAG-CTGATTTGGCTTTCA
** * * *
65199131 C-TGTATT-GGTAGAGAGCAGATCG
65 CGTGT-TTACATTGA-AGCAAATCT
* * *
65199154 AAAATAACAGATTTGGCATCTCTGTATTGGT-AGGGAGCAGATCGAAGACATAACTGATTTGGCT
1 AAGAT----GATTTGGCGTCTCTGTATT-GTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
* *
65199218 TTCACATGTTTACATTGAAGCAAATCC
61 TTCACGTGTTTACATTGAAGCAAATCT
* * * * * *
65199245 AAGATGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAG--ATAACAGATTTGGC-ATCTC
1 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
* * *
65199307 -TGTATTGGCA--GAGAGCAGATCG
66 GTGT-TT-ACATTGA-AGCAAATCT
* *
65199329 AAGACAGCAGATTTGGCGTCTCTGTATTGGT-AGGGAGCAGATCGAGGACATAGCTGATTTGGCT
1 AAG--A--TGATTTGGCGTCTCTGTATT-GTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
* *
65199393 TTCACATGTTTACGTTGAAGCAAATCT
61 TTCACGTGTTTACATTGAAGCAAATCT
*** * * * *
65199420 AAGATGATCAAGCGTCTCTGTATTGGCAAGGAGCAGATTGAAGACATAGCTGATTTTGCTTTCAC
1 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
*
65199485 GTGTTTACATTGAAGCAAACCT
66 GTGTTTACATTGAAGCAAATCT
* * * * * *
65199507 AAGATGATTTGGCGTCTCTATATTGGCAGGGAGAAGATCGAGGACATAGCTAATTTGGTTTTCAC
1 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
* *
65199572 GTGTTTACGTTGAAGCACATCT
66 GTGTTTACATTGAAGCAAATCT
* *
65199594 AAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCAC
1 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
* **
65199659 GCGTTTACGCTGAAGCAAATCT
66 GTGTTTACATTGAAGCAAATCT
* * * * *
65199681 AAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGA
1 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGA
65199725 AACAGATTTG
Statistics
Matches: 470, Mismatches: 74, Indels: 51
0.79 0.12 0.09
Matches are distributed among these distances:
83 5 0.01
84 19 0.04
85 15 0.03
86 3 0.01
87 291 0.62
88 67 0.14
89 4 0.01
90 24 0.05
91 31 0.07
92 11 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (87 bp):
AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
GTGTTTACATTGAAGCAAATCT
Found at i:65199357 original size:175 final size:174
Alignment explanation
Indices: 65199066--65199652 Score: 695
Period size: 175 Copynumber: 3.4 Consensus size: 174
65199056 ACTGAAATAG
* * *
65199066 ATCCAAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG-ATGACAGATTTGGCATC
1 ATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAATAACAGATTTGGCATC
* * *
65199130 TCTGTATTGGTAGAGAGCAGATCGAAAATAACAGATTTGGCATCTCTGTATTGGTAGGGAGCAGA
66 TCTGTATTGGCAGAGAGCAGATCG--AAGAACAGATTTGGCGTCTCTGTATTGGTAGGGAGCAGA
* * *
65199195 TCGAAGACATAACTGATTTGGCTTTCACATGTTTACATTGAAGCAA
129 TCGAGGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAA
**
65199241 ATCCAAGATGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAG-ATAACAGATTTGGCATC
1 ATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAATAACAGATTTGGCATC
65199305 TCTGTATTGGCAGAGAGCAGATCGAAGACAGCAGATTTGGCGTCTCTGTATTGGTAGGGAGCAGA
66 TCTGTATTGGCAGAGAGCAGATCGAAGA-A-CAGATTTGGCGTCTCTGTATTGGTAGGGAGCAGA
65199370 TCGAGGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAA
129 TCGAGGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAA
* *** * * * *
65199416 ATCTAAGATGATCAAGCGTCTCTGTATTGGCA-AGGAGCAGATTGAAGACATAGCTGATTTTGCT
1 ATCCAAGATGATTTGGCGTCTCTGTATTGGCAGA-GAGCAGATCGAAGA-ATAACAGATTTGGC-
* * * * * * * * *
65199480 TTCACGTGT-TT-ACATTGA-AGCAAACCTAAG-A-TGATTTGGCGTCTCTATATTGGCAGGGAG
63 ATCTC-TGTATTGGCA--GAGAGCAGATCGAAGAACAGATTTGGCGTCTCTGTATTGGTAGGGAG
* * * * *
65199540 AAGATCGAGGACATAGCTAATTTGGTTTTCACGTGTTTACGTTGAAGCAC
125 CAGATCGAGGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAA
* * *
65199590 ATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCAGATTTGGC
1 ATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA-ATAACAGATTTGGC
65199653 TTTCACGCGT
Statistics
Matches: 362, Mismatches: 40, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
173 3 0.01
174 128 0.35
175 198 0.55
176 1 0.00
177 13 0.04
178 14 0.04
179 5 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (174 bp):
ATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAATAACAGATTTGGCATC
TCTGTATTGGCAGAGAGCAGATCGAAGAACAGATTTGGCGTCTCTGTATTGGTAGGGAGCAGATC
GAGGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAA
Found at i:65199866 original size:78 final size:78
Alignment explanation
Indices: 65199729--65199992 Score: 350
Period size: 78 Copynumber: 3.4 Consensus size: 78
65199719 CGAAGAAACA
** * * * * * * *
65199729 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAGAAACAACAGATCTGACCTTCATTGAA
*
65199794 GCAGATCCAATAT
66 GCAGATCCAAGAT
* * *
65199807 GATTTGGCATCTCTGTATTAGACGAGGAGAAGATCGAAGAAATAATAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAGAAACAACAGATCT-GACCTTCATTGA
65199871 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * * *
65199885 GATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAGAAACAACAGATCTGACCTTCATTGAA
65199950 GCAGATCCAAGAT
66 GCAGATCCAAGAT
65199963 GATTTGGCATCTCTGTATTAGACGGGGAGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGA
65199993 TCCAAGATGA
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
77 1 0.01
78 159 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAGAAACAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:65200003 original size:38 final size:38
Alignment explanation
Indices: 65199952--65200029 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
65199942 TCATTGAAGC
65199952 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
1 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
65199990 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
1 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
65200028 AG
1 AG
65200030 CAGATCGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (38 bp):
AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
Found at i:65200078 original size:116 final size:116
Alignment explanation
Indices: 65199874--65200107 Score: 398
Period size: 116 Copynumber: 2.0 Consensus size: 116
65199864 TCATTGAAGC
*
65199874 AGATCCAAGATGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGA
1 AGATCCAAGATGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGA
*
65199939 TCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
66 CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
* * *
65199990 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAATAGAT-TGG
1 AGATCCAAGATGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCT-G
*
65200054 ACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGG
65 ACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
65200106 AG
1 AG
65200108 CAAATCGAAG
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
115 1 0.01
116 110 0.99
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (116 bp):
AGATCCAAGATGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGA
CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
Found at i:65200087 original size:78 final size:78
Alignment explanation
Indices: 65199990--65200218 Score: 248
Period size: 78 Copynumber: 2.8 Consensus size: 78
65199980 TTAGACGGGG
* *
65199990 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAATAGAT-TGG
1 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGATCT-G
65200054 ACCTTCATTGAAGC
65 ACCTTCATTGAAGC
* *
65200068 AGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGA
1 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGATCTGA
65200133 CCTTCATGTGTTTACATCGAAGC
66 CCTTCA------T---T-GAAGC
* *
65200156 AGATCCAAGATAATAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATC--AGAGATAACAGAT
1 AGATCCAAG---AT-GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGAT
65200219 TTGGCATCTC
Statistics
Matches: 128, Mismatches: 8, Indels: 18
0.83 0.05 0.12
Matches are distributed among these distances:
78 65 0.51
79 1 0.01
84 1 0.01
87 1 0.01
88 14 0.11
90 11 0.09
91 2 0.02
92 33 0.26
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26
Consensus pattern (78 bp):
AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGATCTGA
CCTTCATTGAAGC
Found at i:65200279 original size:44 final size:45
Alignment explanation
Indices: 65200079--65200352 Score: 270
Period size: 45 Copynumber: 6.1 Consensus size: 45
65200069 GATCCAAGAT
* * *
65200079 GATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
65200126 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATAATA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
65200171 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATC-AGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACA
* * *
65200216 GATTTGGCATCTCTATATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
65200260 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
65200305 GATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
65200350 GAT
1 GAT
65200353 ATCGCCTTCC
Statistics
Matches: 187, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 45 0.24
45 111 0.59
46 4 0.02
47 21 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:65200280 original size:89 final size:90
Alignment explanation
Indices: 65200151--65200352 Score: 282
Period size: 89 Copynumber: 2.3 Consensus size: 90
65200141 TGTTTACATC
* **
65200151 GAAGCAGATCCAAGATAATAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATC-AGAGATAAC
1 GAAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGA-AGATAAC
65200215 AGATTTGGCATCTCTATATTAGACGG
65 AGATTTGGCATCTCTATATTAGACGG
* ** * * *
65200241 GGAGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GAAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACA
* *
65200305 GATTTGGCGTCTCTGTATTAGACGG
66 GATTTGGCATCTCTATATTAGACGG
65200330 GAAGCAGATCAAAGATAGCAGAT
1 GAAGCAGATCAAAGATAGCAGAT
65200353 ATCGCCTTCC
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
89 77 0.79
90 20 0.21
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.24
Consensus pattern (90 bp):
GAAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACA
GATTTGGCATCTCTATATTAGACGG
Found at i:65200727 original size:19 final size:19
Alignment explanation
Indices: 65200703--65200847 Score: 239
Period size: 19 Copynumber: 7.9 Consensus size: 19
65200693 ATAATCTTCA
*
65200703 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200722 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200741 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200758 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200776 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200795 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200812 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65200830 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
65200848 AGATATGATT
Statistics
Matches: 119, Mismatches: 1, Indels: 12
0.90 0.01 0.09
Matches are distributed among these distances:
16 1 0.01
17 31 0.26
18 31 0.26
19 56 0.47
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:65200741 original size:14 final size:15
Alignment explanation
Indices: 65200724--65200833 Score: 78
Period size: 18 Copynumber: 6.5 Consensus size: 15
65200714 TCTTAGATAT
65200724 GATATG-CAATCTTA
1 GATATGACAATCTTA
65200738 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
65200755 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
65200773 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
*
65200792 GATATGATATAATCTTA
1 GATATG--ACAATCTTA
65200809 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
65200827 GATATGA
1 GATATGA
65200834 TATGCAATCT
Statistics
Matches: 83, Mismatches: 2, Indels: 18
0.81 0.02 0.17
Matches are distributed among these distances:
14 6 0.07
15 2 0.02
17 27 0.33
18 28 0.34
19 19 0.23
20 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:65200771 original size:54 final size:54
Alignment explanation
Indices: 65200703--65200847 Score: 263
Period size: 54 Copynumber: 2.7 Consensus size: 54
65200693 ATAATCTTCA
*
65200703 ATGATATGTAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
65200758 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATATAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
65200812 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
65200848 AGATATGATT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
54 83 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (54 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:65200774 original size:35 final size:36
Alignment explanation
Indices: 65200712--65200847 Score: 215
Period size: 35 Copynumber: 3.8 Consensus size: 36
65200702 AATGATATGT
65200712 AATCTTAGATATGATATGCAATCTTAGATATGATAC
1 AATCTTAGATATGATATGCAATCTTAGATATGATAC
65200748 AATCTTAGATATGAT-TGCAATCTTAGATATGATATGC
1 AATCTTAGATATGATATGCAATCTTAGATATGATA--C
*
65200785 AATCTTAGATATGATAT--AATCTTAGATATGATTGC
1 AATCTTAGATATGATATGCAATCTTAGATATGA-TAC
65200820 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
65200848 AGATATGATT
Statistics
Matches: 93, Mismatches: 1, Indels: 11
0.89 0.01 0.10
Matches are distributed among these distances:
35 37 0.40
36 29 0.31
37 26 0.28
38 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (36 bp):
AATCTTAGATATGATATGCAATCTTAGATATGATAC
Found at i:65200873 original size:22 final size:22
Alignment explanation
Indices: 65200703--65200870 Score: 111
Period size: 19 Copynumber: 8.8 Consensus size: 22
65200693 ATAATCTTCA
*
65200703 ATGATATGTAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65200722 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65200741 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65200758 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65200776 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65200795 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
65200812 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
65200830 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
65200852 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
65200871 GATTTAATTT
Statistics
Matches: 132, Mismatches: 3, Indels: 24
0.83 0.02 0.15
Matches are distributed among these distances:
16 1 0.01
17 29 0.22
18 29 0.22
19 53 0.40
22 8 0.06
23 12 0.09
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:65210131 original size:4 final size:4
Alignment explanation
Indices: 65210114--65210146 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
65210104 TCTCTGTAAC
*
65210114 TCTT TCTA TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
65210147 TTTAACTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (4 bp):
TCTT
Found at i:65216559 original size:46 final size:47
Alignment explanation
Indices: 65216451--65216560 Score: 145
Period size: 46 Copynumber: 2.4 Consensus size: 47
65216441 CCGGGATAAG
*
65216451 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
65216498 CACAAAGTACTTCATCGGAACAAAT-CGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
65216544 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
65216561 ACTCAATGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
45 1 0.02
46 29 0.53
47 25 0.45
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:65218311 original size:9 final size:9
Alignment explanation
Indices: 65218297--65218330 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
65218287 AAAAAACAAG
65218297 TATAAAACA
1 TATAAAACA
65218306 TATAAAA-A
1 TATAAAACA
65218314 TTATAAAACA
1 -TATAAAACA
65218324 TATAAAA
1 TATAAAA
65218331 AATAACCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (9 bp):
TATAAAACA
Found at i:65218320 original size:18 final size:18
Alignment explanation
Indices: 65218297--65218331 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
65218287 AAAAAACAAG
65218297 TATAAAACATATAAAAAT
1 TATAAAACATATAAAAAT
65218315 TATAAAACATATAAAAA
1 TATAAAACATATAAAAA
65218332 ATAACCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (18 bp):
TATAAAACATATAAAAAT
Found at i:65219537 original size:18 final size:18
Alignment explanation
Indices: 65219480--65219531 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
65219470 CTAAAATTTT
65219480 ATTTTAATATTTTTATAC
1 ATTTTAATATTTTTATAC
65219498 ATTTTAAT-TTTATTATAC
1 ATTTTAATATTT-TTATAC
*
65219516 ATTTTGATATTTTTAT
1 ATTTTAATATTTTTAT
65219532 TAATTTACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 3 0.10
18 25 0.81
19 3 0.10
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTTTAATATTTTTATAC
Found at i:65219620 original size:30 final size:29
Alignment explanation
Indices: 65219555--65219627 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 29
65219545 AACTGGATCT
65219555 TATATAATATTCTTTACTCACATGTATTTACC
1 TATATAAT-TTCTTTACTCACA--TATTTACC
*
65219587 TATATAATTTCTTTTGACTCACA-ATTTATC
1 TATATAATTTC-TTT-ACTCACATATTTACC
65219617 TATACTAATTT
1 TATA-TAATTT
65219628 GAGCTGATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
30 10 0.27
31 9 0.24
32 11 0.30
33 7 0.19
ACGTcount: A:0.32, C:0.16, G:0.03, T:0.49
Consensus pattern (29 bp):
TATATAATTTCTTTACTCACATATTTACC
Found at i:65219940 original size:17 final size:17
Alignment explanation
Indices: 65219903--65219949 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
65219893 TTGAGATTGC
65219903 AAAATTAAATTAAGCAAAT
1 AAAA-TAAATT-AGCAAAT
*
65219922 AAAATAAATTAGTAAAT
1 AAAATAAATTAGCAAAT
*
65219939 AAAATATATTA
1 AAAATAAATTA
65219950 AAGCTTAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 16 0.62
18 6 0.23
19 4 0.15
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (17 bp):
AAAATAAATTAGCAAAT
Found at i:65220578 original size:7 final size:7
Alignment explanation
Indices: 65220565--65220601 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
65220555 TGGTTTTAAT
65220565 GGGAAAG
1 GGGAAAG
*
65220572 TGGAAAG
1 GGGAAAG
*
65220579 TGGAAAG
1 GGGAAAG
65220586 GGGAAAG
1 GGGAAAG
65220593 GGGAAAG
1 GGGAAAG
65220600 GG
1 GG
65220602 CTTGGAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.41, C:0.00, G:0.54, T:0.05
Consensus pattern (7 bp):
GGGAAAG
Found at i:65222923 original size:22 final size:22
Alignment explanation
Indices: 65222897--65222978 Score: 76
Period size: 22 Copynumber: 3.6 Consensus size: 22
65222887 AACGATACAT
65222897 AAATATATACATATATGTATTA
1 AAATATATACATATATGTATTA
* *
65222919 AAATATATACATAATAATAGAAATA
1 AAATATATACAT-AT-AT-GTATTA
* * *
65222944 AAAAATATATATGTA-GTATTAA
1 AAATATATACATATATGTATT-A
65222966 AAATATATACATA
1 AAATATATACATA
65222979 ATATAGACAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.07
22 23 0.50
23 3 0.07
24 3 0.07
25 14 0.30
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (22 bp):
AAATATATACATATATGTATTA
Found at i:65223331 original size:11 final size:11
Alignment explanation
Indices: 65223306--65223366 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 11
65223296 TGTGATATTA
65223306 AAAATATATACAT
1 AAAA-ATATA-AT
65223319 AAAAATATAAT
1 AAAAATATAAT
65223330 AAAAAATATATAT
1 -AAAAATATA-AT
*
65223343 AATATATATAAT
1 AA-AAATATAAT
* *
65223355 ATATATATAAT
1 AAAAATATAAT
65223366 A
1 A
65223367 TATATACATA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
11 12 0.28
12 19 0.44
13 12 0.28
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAAATATAAT
Found at i:65223340 original size:2 final size:2
Alignment explanation
Indices: 65223335--65223399 Score: 59
Period size: 2 Copynumber: 34.5 Consensus size: 2
65223325 ATAATAAAAA
*
65223335 AT AT AT AT A- AT AT AT AT A- AT AT AT AT AT A- AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
65223374 AT A- AT AT AGT AT -T AA AA AT AT AT AT A
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT A
65223400 ATACATACAC
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
1 5 0.09
2 46 0.87
3 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (2 bp):
AT
Found at i:65223348 original size:9 final size:9
Alignment explanation
Indices: 65223334--65223402 Score: 70
Period size: 9 Copynumber: 7.4 Consensus size: 9
65223324 TATAATAAAA
65223334 AATATATAT
1 AATATATAT
65223343 AATATATAT
1 AATATATAT
65223352 AATATATATAT
1 -A-ATATATAT
65223363 AATATATAT
1 AATATATAT
65223372 ACATA-ATAT
1 A-ATATATAT
* *
65223381 AGTAT-TAAA
1 AATATAT-AT
65223390 AATATATAT
1 AATATATAT
65223399 AATA
1 AATA
65223403 CATACACATT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
8 3 0.06
9 33 0.66
10 6 0.12
11 8 0.16
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (9 bp):
AATATATAT
Found at i:65223367 original size:11 final size:11
Alignment explanation
Indices: 65223322--65223402 Score: 71
Period size: 11 Copynumber: 7.4 Consensus size: 11
65223312 TATACATAAA
*
65223322 AATATA-ATAA
1 AATATATATAT
*
65223332 AAAATATATAT
1 AATATATATAT
65223343 -A-ATATATAT
1 AATATATATAT
65223352 AATATATATAT
1 AATATATATAT
65223363 AATATATATACAT
1 AATATATAT--AT
65223376 AATATAGTAT-T
1 AATATA-TATAT
*
65223387 AAAAATATATAT
1 -AATATATATAT
65223399 AATA
1 AATA
65223403 CATACACATT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
9 8 0.14
10 7 0.12
11 27 0.46
12 6 0.10
13 8 0.14
14 3 0.05
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (11 bp):
AATATATATAT
Found at i:65223506 original size:23 final size:23
Alignment explanation
Indices: 65223461--65223506 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
65223451 AATACTTCAT
* *
65223461 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
65223484 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
65223507 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:65223586 original size:12 final size:11
Alignment explanation
Indices: 65223569--65223660 Score: 67
Period size: 12 Copynumber: 7.7 Consensus size: 11
65223559 TATGAGTGTA
*
65223569 ATAATAGTAATT
1 ATAATAATAA-T
*
65223581 ATAATACTAAT
1 ATAATAATAAT
65223592 ACTAATAATAAAT
1 A-TAATAAT-AAT
*
65223605 ATAATAATAGT
1 ATAATAATAAT
*
65223616 AGTAAAAATAAAT
1 A-TAATAAT-AAT
*
65223629 ACAATAATAAT
1 ATAATAATAAT
*
65223640 CATAAAAATAAT
1 -ATAATAATAAT
65223652 ATAAATAAT
1 AT-AATAAT
65223661 GTGTACATGA
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
11 10 0.16
12 47 0.73
13 7 0.11
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:65223625 original size:24 final size:23
Alignment explanation
Indices: 65223580--65223660 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 23
65223570 TAATAGTAAT
* *
65223580 TATAATACTAATACTAATAATAAA
1 TATAATAATAATA-TAAAAATAAA
*
65223604 TATAATAATAGTAGTAAAAATAAA
1 TATAATAATAATA-TAAAAATAAA
*
65223628 TACAATAATAATCATAAAAAT-AA
1 TATAATAATAAT-ATAAAAATAAA
65223651 TATAAATAAT
1 TAT-AATAAT
65223661 GTGTACATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.08
24 43 0.90
25 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (23 bp):
TATAATAATAATATAAAAATAAA
Found at i:65224486 original size:20 final size:20
Alignment explanation
Indices: 65224456--65224493 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65224446 AAGAGATTCG
65224456 AAAAGAAGAAAA-AAAAATA
1 AAAAGAAGAAAAGAAAAATA
65224475 AAAAGAAAGAAAAGAAAAA
1 AAAAG-AAGAAAAGAAAAA
65224494 GCATATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (20 bp):
AAAAGAAGAAAAGAAAAATA
Found at i:65226611 original size:10 final size:10
Alignment explanation
Indices: 65226596--65226655 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
65226586 TAATTTTAGG
65226596 ATTTAT-TTT
1 ATTTATCTTT
65226605 CATTTATCTTT
1 -ATTTATCTTT
65226616 ATTTATCTTT
1 ATTTATCTTT
*
65226626 AATTATCTTT
1 ATTTATCTTT
65226636 ATTTAT-TTGT
1 ATTTATCTT-T
65226646 ATTTATCTTT
1 ATTTATCTTT
65226656 TAAAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:65227404 original size:17 final size:18
Alignment explanation
Indices: 65227372--65227405 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
65227362 TTTTCCTCAT
*
65227372 TTTAATTTCTGCAATTTA
1 TTTAAATTCTGCAATTTA
65227390 TTTAAATTC-GCAATTT
1 TTTAAATTCTGCAATTT
65227406 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTAAATTCTGCAATTTA
Found at i:65228142 original size:55 final size:55
Alignment explanation
Indices: 65228077--65228189 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
65228067 CATAAGTGAC
65228077 TAAAATGTAACCTAAGGTAAACAAAAGTGACCATGAGTGTAATTTACCCTTTTTT
1 TAAAATGTAACCTAAGGTAAACAAAAGTGACCATGAGTGTAATTTACCCTTTTTT
65228132 TAAAATGTAACCTAAGGTAAACAAAAGTGACCATGAGTGTAATTTACCCTTTTTT
1 TAAAATGTAACCTAAGGTAAACAAAAGTGACCATGAGTGTAATTTACCCTTTTTT
65228187 TAA
1 TAA
65228190 TTATAATTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (55 bp):
TAAAATGTAACCTAAGGTAAACAAAAGTGACCATGAGTGTAATTTACCCTTTTTT
Found at i:65228206 original size:22 final size:22
Alignment explanation
Indices: 65228183--65228226 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
65228173 ATTTACCCTT
65228183 TTTTTA-ATTATAATTTTT-AA
1 TTTTTATATTATAATTTTTGAA
*
65228203 TTTTTATATTATTATTTTTGAA
1 TTTTTATATTATAATTTTTGAA
65228225 TT
1 TT
65228227 ATGAGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 11 0.52
22 4 0.19
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTTTATATTATAATTTTTGAA
Found at i:65228822 original size:21 final size:21
Alignment explanation
Indices: 65228796--65228836 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
65228786 TAACGGGAGC
65228796 GCTGATGTGG-CAAGTTAACTA
1 GCTGATGTGGCCAA-TTAACTA
65228817 GCTGATGTGGCCAATTAACT
1 GCTGATGTGGCCAATTAACT
65228837 TGCAACATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCCAATTAACTA
Found at i:65229068 original size:101 final size:98
Alignment explanation
Indices: 65228897--65229094 Score: 333
Period size: 101 Copynumber: 2.0 Consensus size: 98
65228887 TAAAAAGAAG
* *
65228897 AAAAAAATGAATGGGAAATAAGAAGAGGAGAAGAAGGGAAAATGGAAGTTGCTCAATCTCTTGTT
1 AAAAAAATGAATGGAAAAGAAGAAGAGGAGAAGAAGGGAAAATGGAAGTTGCTCAATCTCTTGTT
*
65228962 CAATCTCTGAAAGCTAAGGGAGGGCTAAAGTGA
66 CAATCTCTGAAAGCTAAGGGAAGGCTAAAGTGA
65228995 AAAAAAATGAATGGAAAAGAAGAAGAGGAGAAGAAGAAGGGAAAATGGAAGTTGCTCAATCTCTT
1 AAAAAAATGAATGGAAAAGAAGAAGA-G-G-AGAAGAAGGGAAAATGGAAGTTGCTCAATCTCTT
*
65229060 GTTTAATCTCTGAAAGCTAAGGGAAGGCTAAAGTG
63 GTTCAATCTCTGAAAGCTAAGGGAAGGCTAAAGTG
65229095 GTGGAAACAG
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
98 24 0.26
99 1 0.01
100 1 0.01
101 67 0.72
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (98 bp):
AAAAAAATGAATGGAAAAGAAGAAGAGGAGAAGAAGGGAAAATGGAAGTTGCTCAATCTCTTGTT
CAATCTCTGAAAGCTAAGGGAAGGCTAAAGTGA
Found at i:65234221 original size:26 final size:27
Alignment explanation
Indices: 65234192--65234247 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
65234182 TTTCTTATAA
*
65234192 AATAAAGAAA-TATGAAGAG-AATAATG
1 AATAAAGAAATTATG-AGAGTAATAAAG
*
65234218 AATACAGAAATTATGAGAGTAATAAAG
1 AATAAAGAAATTATGAGAGTAATAAAG
65234245 AAT
1 AAT
65234248 GTATTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.59, C:0.02, G:0.18, T:0.21
Consensus pattern (27 bp):
AATAAAGAAATTATGAGAGTAATAAAG
Found at i:65239231 original size:3 final size:3
Alignment explanation
Indices: 65239223--65239259 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
65239213 AAATTTTGAG
* *
65239223 TAT TAT TAT TAT TAT TAT TGT TAT TAT TAC TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
65239260 TATATATATC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:65245705 original size:28 final size:27
Alignment explanation
Indices: 65245655--65245707 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
65245645 CTATTCAGAA
* *
65245655 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCATAGCCCAT
65245682 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTGGGCCATAGCCC
65245708 TATTACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCATAGCCCAT
Found at i:65245710 original size:62 final size:60
Alignment explanation
Indices: 65245631--65245776 Score: 172
Period size: 61 Copynumber: 2.4 Consensus size: 60
65245621 TTCAAGCTTT
* * *
65245631 ACTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTA-
1 ACTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAG
*
65245692 ATCTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAG
1 A-CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAG
65245754 ACTGGGCCGTAGCCCTATTACAA
1 ACTGGGCC-TAGCCCTATTACAA
65245777 GTCAAGATAT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
61 39 0.52
62 32 0.43
63 4 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (60 bp):
ACTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAG
Found at i:65257189 original size:33 final size:33
Alignment explanation
Indices: 65257147--65257211 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
65257137 ACTTTACCCT
65257147 TCCATTTCTTTCTCACGTCTAGACCTTTCTTCA
1 TCCATTTCTTTCTCACGTCTAGACCTTTCTTCA
* * *
65257180 TCCATTTCTTTCTCACGTGTGGAGCTTTCTTC
1 TCCATTTCTTTCTCACGTCTAGACCTTTCTTC
65257212 TTTTCTTCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.12, C:0.31, G:0.11, T:0.46
Consensus pattern (33 bp):
TCCATTTCTTTCTCACGTCTAGACCTTTCTTCA
Done.