Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 200 of 332
Found at i:66445501 original size:20 final size:20
Alignment explanation
Indices: 66445476--66445513 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
66445466 TCAATCAAAT
66445476 TTTTTTC-TTCATATTTTTCC
1 TTTTTTCTTTCAT-TTTTTCC
66445496 TTTTTTCTTTCATTTTTT
1 TTTTTTCTTTCATTTTTT
66445514 TAAGAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTCTTTCATTTTTTCC
Found at i:66445501 original size:21 final size:21
Alignment explanation
Indices: 66445476--66445514 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
66445466 TCAATCAAAT
66445476 TTTTTTC-TTCATATTTTTCC
1 TTTTTTCTTTCATATTTTTCC
*
66445496 TTTTTTCTTTCATTTTTTT
1 TTTTTTCTTTCATATTTTT
66445515 AAGAACAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTTCTTTCATATTTTTCC
Found at i:66446393 original size:22 final size:21
Alignment explanation
Indices: 66446368--66446411 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
66446358 ATTAGAAGAT
66446368 AGATA-AAAATAAATAAGAAAAA
1 AGATATAAAA-AAAT-AGAAAAA
*
66446390 AGATATAAAAAAGTAGAAAAA
1 AGATATAAAAAAATAGAAAAA
66446411 A
1 A
66446412 CAACAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 8 0.40
23 4 0.20
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (21 bp):
AGATATAAAAAAATAGAAAAA
Found at i:66446500 original size:6 final size:6
Alignment explanation
Indices: 66446491--66446544 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
66446481 AACAACTAAC
* * * * * *
66446491 AATAAA AATAAA AGTACA ACTGAA AATAAA AATAAA AATCAA AATCAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
66446539 AATAAA
1 AATAAA
66446545 TAAAACAGTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.72, C:0.07, G:0.04, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:66446518 original size:24 final size:22
Alignment explanation
Indices: 66446473--66446528 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 22
66446463 TCCCAAAAAG
66446473 AAAATAAAAACAACTAACAATA
1 AAAATAAAAACAACTAACAATA
66446495 AAAATAAAAGTACAACTGAA-AATA
1 AAAATAAAA--ACAACT-AACAATA
66446519 AAAATAAAAA
1 AAAATAAAAA
66446529 TCAAAATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.32
24 19 0.61
25 2 0.06
ACGTcount: A:0.73, C:0.09, G:0.04, T:0.14
Consensus pattern (22 bp):
AAAATAAAAACAACTAACAATA
Found at i:66446540 original size:24 final size:24
Alignment explanation
Indices: 66446491--66446544 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
66446481 AACAACTAAC
* * *
66446491 AATAAAAATAAAAGTACAACTGAA
1 AATAAAAATAAAAATACAAATCAA
66446515 AATAAAAATAAAAAT-CAAAATCAA
1 AATAAAAATAAAAATAC-AAATCAA
66446539 AATAAA
1 AATAAA
66446545 TAAAACAGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.72, C:0.07, G:0.04, T:0.17
Consensus pattern (24 bp):
AATAAAAATAAAAATACAAATCAA
Found at i:66448847 original size:21 final size:21
Alignment explanation
Indices: 66448821--66448864 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
66448811 ACTTGCTCAT
66448821 GCTTCATGTTAGATTTGAAGG
1 GCTTCATGTTAGATTTGAAGG
66448842 GCTTCATGTTAGATTTGAAGG
1 GCTTCATGTTAGATTTGAAGG
66448863 GC
1 GC
66448865 AAACATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (21 bp):
GCTTCATGTTAGATTTGAAGG
Found at i:66450723 original size:51 final size:50
Alignment explanation
Indices: 66450633--66450790 Score: 137
Period size: 50 Copynumber: 3.1 Consensus size: 50
66450623 AAATGCATGG
* *
66450633 TTTAA-GATGCAAAC-TAAATGAACA-AATGAGTTACTTAATGTATGACTTAA
1 TTTAATGATGCAAACTTAACT-AACATAA-GAGTTACATAATGT-TGACTTAA
* * *
66450683 TTTAATGATGCAAACTTTAACTAACATAAGAG-TACATAATGCGTGTCATAA
1 TTTAATGATGCAAAC-TTAACTAACATAAGAGTTACATAATG-TTGACTTAA
* * * *
66450734 TTT-ATGATGCCAACTTAATTAACATGAGAGTTACATAATGCTTGACTTTA
1 TTTAATGATGCAAACTTAACTAACATAAGAGTTACATAATG-TTGACTTAA
*
66450784 TTAAATG
1 TTTAATG
66450791 CAAAACACAT
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
49 14 0.16
50 32 0.36
51 29 0.33
52 7 0.08
53 6 0.07
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (50 bp):
TTTAATGATGCAAACTTAACTAACATAAGAGTTACATAATGTTGACTTAA
Found at i:66453459 original size:47 final size:47
Alignment explanation
Indices: 66453319--66454019 Score: 1177
Period size: 47 Copynumber: 14.7 Consensus size: 47
66453309 TTAGGATTCT
* *
66453319 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
66453368 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
66453417 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66453464 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
66453511 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66453558 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
66453607 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66453654 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
66453703 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
66453750 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
66453797 ATGTGATGAATGTGAGAGTATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66453844 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66453891 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
66453938 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
66453985 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66454020 TCCCGAAGGG
Statistics
Matches: 621, Mismatches: 25, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
47 464 0.75
48 1 0.00
49 156 0.25
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:66454194 original size:37 final size:37
Alignment explanation
Indices: 66454138--66454216 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66454128 CCGAGCTCTA
* * *
66454138 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
66454175 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66454212 AAGAC
1 AAGAC
66454217 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66455383 original size:20 final size:19
Alignment explanation
Indices: 66455349--66455391 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
66455339 ATTAGAATGT
*
66455349 AAAATTTAAATTAAAAACA
1 AAAATTTAAAATAAAAACA
*
66455368 AAAATATTAAAATAAAAATA
1 AAAAT-TTAAAATAAAAACA
66455388 AAAA
1 AAAA
66455392 ATGGCTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAATTTAAAATAAAAACA
Found at i:66456191 original size:14 final size:14
Alignment explanation
Indices: 66456172--66456216 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
66456162 TTAATTATCA
66456172 TTATAATTTAGGGT
1 TTATAATTTAGGGT
*
66456186 TTATAATTTAGGGC
1 TTATAATTTAGGGT
*
66456200 ATATAATTTAGGGT
1 TTATAATTTAGGGT
66456214 TTA
1 TTA
66456217 AAGTGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (14 bp):
TTATAATTTAGGGT
Found at i:66456306 original size:21 final size:21
Alignment explanation
Indices: 66456282--66456328 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
66456272 TTAGGGTGTA
66456282 GGTTTATGGTCTAAGATTTAG
1 GGTTTATGGTCTAAGATTTAG
* *
66456303 GGTTTATGGTCTAGGATTTCG
1 GGTTTATGGTCTAAGATTTAG
66456324 GGTTT
1 GGTTT
66456329 GATGTTTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.06, G:0.32, T:0.45
Consensus pattern (21 bp):
GGTTTATGGTCTAAGATTTAG
Found at i:66456432 original size:15 final size:15
Alignment explanation
Indices: 66456412--66456443 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
66456402 GGATTTTTTT
*
66456412 ATAATATAAATCTAA
1 ATAATATAAATATAA
66456427 ATAATATAAATATAA
1 ATAATATAAATATAA
66456442 AT
1 AT
66456444 TATTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAATATAAATATAA
Found at i:66461321 original size:114 final size:114
Alignment explanation
Indices: 66460977--66461376 Score: 395
Period size: 116 Copynumber: 3.5 Consensus size: 114
66460967 AAATGTTGTT
* * *
66460977 AATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTTAATGCT-GTAAATTGAAGTGT-TAAAGT
1 AATTGAAGTGTT-TAGTGCTGCAAATTGAAGTGTTTTAATG-TGGTAAATTGAAGTATATAAA-T
** * * * * * *
66461040 GCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTGAATGTTGTA
63 GCTATAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTGAATGCTGCA
* *
66461092 AATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTTGAATGTGGTAAATTGAAGTATTTAAATG
1 AATTGAAGTGTT-TAGTGCTGCAAATTGAAGTGTTTT-AATGTGGTAAATTGAAGTATATAAATG
* *
66461157 CTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTT-AAGTACTGCA
64 CTATAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTGAA-TGCTGCA
* * *
66461208 AATTGAAGTGTTTAGTTGCTGGACATTG-AGATGTTTT-ATCGCT-GT-AATTGAGGTATATAAA
1 AATTGAAGTGTTTAG-TGCTGCAAATTGAAG-TGTTTTAAT-G-TGGTAAATTGAAGTATATAAA
* *
66461269 TGTTATTAATTG-AGATG-TTAAAGTGTTGCAAATTGAAGTGTTTGAATGCTGCA
62 TGCTATAAATTGAAG-TGCTTAAA-TGTTGCAAATTGAAGTGTTTGAATGCTGCA
* * * * *
66461322 AATTGAAGTGTTTGAATGCTGCAAATTGAAGTGCTTAAATGTTGCAAATTGAAGT
1 AATTGAAGTGTTT-AGTGCTGCAAATTGAAGTGTTTTAATGTGGTAAATTGAAGT
66461377 GTTTAAGTAC
Statistics
Matches: 243, Mismatches: 26, Indels: 32
0.81 0.09 0.11
Matches are distributed among these distances:
113 8 0.03
114 82 0.34
115 61 0.25
116 88 0.36
117 4 0.02
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (114 bp):
AATTGAAGTGTTTAGTGCTGCAAATTGAAGTGTTTTAATGTGGTAAATTGAAGTATATAAATGCT
ATAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTGAATGCTGCA
Found at i:66461382 original size:23 final size:23
Alignment explanation
Indices: 66460875--66461382 Score: 392
Period size: 23 Copynumber: 22.1 Consensus size: 23
66460865 ATATTAGTAG
*
66460875 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* * *
66460898 TAAGTACCGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
** *
66460921 TAGTTGCTGGAAATTG-AGATGTT
1 TAAATGCTGCAAATTGAAG-TGTT
* * * * *
66460944 T-TATCGCTG-TACTTGAGGTGTA
1 TAAAT-GCTGCAAATTGAAGTGTT
* ** *
66460966 TAAATGTTGTTAATTGAAATG-T
1 TAAATGCTGCAAATTGAAGTGTT
66460988 TAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
* *
66461012 TTAATGCTGTAAATTGAAGTG-T
1 TAAATGCTGCAAATTGAAGTGTT
66461034 TAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
* *
66461058 TGAATGCTGTAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* * *
66461081 TGAATGTTGTAAATTGAAGTG-T
1 TAAATGCTGCAAATTGAAGTGTT
66461103 TAAAGTGCTGCAAATTGAAGTGTTT
1 TAAA-TGCTGCAAATTGAAGTG-TT
* * *
66461128 TGAATG-TGGTAAATTGAAGTATT
1 TAAATGCT-GCAAATTGAAGTGTT
* *
66461151 TAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGCAAATTGAAGTGTT
*
66461174 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
66461197 TAAGTACTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
** * *
66461220 TAGTTGCTGGACATTG-AGATGTT
1 TAAATGCTGCAAATTGAAG-TGTT
* * * * *
66461243 T-TATCGCTG-TAATTGAGGTATA
1 TAAAT-GCTGCAAATTGAAGTGTT
* ***
66461265 TAAATGTTATTAATTG-AGATG-T
1 TAAATGCTGCAAATTGAAG-TGTT
*
66461287 TAAAGTGTTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
*
66461311 TGAATGCTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
66461334 TGAATGCTGCAAATTGAAGTGCT
1 TAAATGCTGCAAATTGAAGTGTT
*
66461357 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
66461380 TAA
1 TAA
66461383 GTACTTATTT
Statistics
Matches: 388, Mismatches: 74, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
22 43 0.11
23 313 0.81
24 28 0.07
25 4 0.01
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (23 bp):
TAAATGCTGCAAATTGAAGTGTT
Found at i:66461645 original size:94 final size:94
Alignment explanation
Indices: 66461484--66461765 Score: 564
Period size: 94 Copynumber: 3.0 Consensus size: 94
66461474 TATTTCCTCG
66461484 CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
1 CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
66461549 TTTTAGTTCCATTGCGTATTTCTTTTCTT
66 TTTTAGTTCCATTGCGTATTTCTTTTCTT
66461578 CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
1 CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
66461643 TTTTAGTTCCATTGCGTATTTCTTTTCTT
66 TTTTAGTTCCATTGCGTATTTCTTTTCTT
66461672 CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
1 CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
66461737 TTTTAGTTCCATTGCGTATTTCTTTTCTT
66 TTTTAGTTCCATTGCGTATTTCTTTTCTT
66461766 GTAAGAAATT
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 188 1.00
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.39
Consensus pattern (94 bp):
CAGGTTCAAGACAGGTTTCAGGGAAGGTAGGAAAATGCTAATGTCCTTGGCTCATTGCTTTCTGA
TTTTAGTTCCATTGCGTATTTCTTTTCTT
Found at i:66462450 original size:38 final size:43
Alignment explanation
Indices: 66462373--66462520 Score: 125
Period size: 42 Copynumber: 3.6 Consensus size: 43
66462363 AAAAAGTGCT
66462373 GCTAAAAGTCATAATCTTTAGCGGCGCTTTTCTTACAAATGCC
1 GCTAAAAGTCATAATCTTTAGCGGCGCTTTTCTTACAAATGCC
*
66462416 GCTAAAAGT-ACTAAT-TTTAGC-G-G-TTTT-TTACAAATGTC
1 GCTAAAAGTCA-TAATCTTTAGCGGCGCTTTTCTTACAAATGCC
* * * ** * *
66462454 GCTAAAAATCATGA-CTTTTAGCGACGC-TTTCCCAAAAACGCC
1 GCTAAAAGTCATAATC-TTTAGCGGCGCTTTTCTTACAAATGCC
*
66462496 GCTAAAAGTCATGA-CTTTTAGCGGC
1 GCTAAAAGTCATAATC-TTTAGCGGC
66462521 ATTTTTTTGG
Statistics
Matches: 86, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
38 20 0.23
39 11 0.13
40 1 0.01
41 5 0.06
42 36 0.42
43 13 0.15
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (43 bp):
GCTAAAAGTCATAATCTTTAGCGGCGCTTTTCTTACAAATGCC
Found at i:66463267 original size:43 final size:42
Alignment explanation
Indices: 66463207--66463288 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 42
66463197 TCAATAATTT
66463207 AGAAATATCAAACCAAGAATTATGCATACATAATTGAGAACA
1 AGAAATATCAAACCAAGAATTATGCATACATAATTGAGAACA
66463249 AGAAACTATCAAACCAAGAATTATGCATACATAATTGAGA
1 AGAAA-TATCAAACCAAGAATTATGCATACATAATTGAGA
66463289 CAGAATCCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (42 bp):
AGAAATATCAAACCAAGAATTATGCATACATAATTGAGAACA
Found at i:66463936 original size:38 final size:38
Alignment explanation
Indices: 66463894--66463970 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
66463884 TGTATGAGGA
*
66463894 TTAAATTTTAACAAATTAAAGTAAATGGATTATTTTCT
1 TTAAATTTTAACAAATTAAAATAAATGGATTATTTTCT
66463932 TTAAATTTTAACAAATTAAAATAAATGGATTATTTTCT
1 TTAAATTTTAACAAATTAAAATAAATGGATTATTTTCT
66463970 T
1 T
66463971 AGTTTTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.45
Consensus pattern (38 bp):
TTAAATTTTAACAAATTAAAATAAATGGATTATTTTCT
Found at i:66464388 original size:41 final size:41
Alignment explanation
Indices: 66464331--66464418 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
66464321 CTAATTTCCA
66464331 TAAAATAGAAATATGAAATTCAAAATTATACCACAACCATT
1 TAAAATAGAAATATGAAATTCAAAATTATACCACAACCATT
66464372 TAAAATAGAAATATGAAATTCAAAATTATACCACAACCATT
1 TAAAATAGAAATATGAAATTCAAAATTATACCACAACCATT
*
66464413 TCAAAT
1 TAAAAT
66464419 TTAAAAAAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.53, C:0.15, G:0.05, T:0.27
Consensus pattern (41 bp):
TAAAATAGAAATATGAAATTCAAAATTATACCACAACCATT
Found at i:66464862 original size:28 final size:29
Alignment explanation
Indices: 66464820--66464889 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
66464810 AAAAATGCCG
66464820 ATTTTTAAGAAAAATTATCA-GATTAAGCC
1 ATTTTTAAGAAAAATTA-CAGGATTAAGCC
*
66464849 ATTTTTTA-AAAAATTACAGGATTAAGCC
1 ATTTTTAAGAAAAATTACAGGATTAAGCC
* *
66464877 AATTTTACGAAAA
1 ATTTTTAAGAAAA
66464890 TGCTTCCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.06
28 22 0.63
29 11 0.31
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (29 bp):
ATTTTTAAGAAAAATTACAGGATTAAGCC
Found at i:66465600 original size:22 final size:23
Alignment explanation
Indices: 66465575--66465617 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
66465565 GATTTTTAAA
*
66465575 ATTTAA-ATTATTTAGTGATAGT
1 ATTTAAGACTATTTAGTGATAGT
66465597 ATTTAAGACTATTTAGTGATA
1 ATTTAAGACTATTTAGTGATA
66465618 ATGTTTAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (23 bp):
ATTTAAGACTATTTAGTGATAGT
Found at i:66475420 original size:28 final size:29
Alignment explanation
Indices: 66475388--66475444 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
66475378 TGTAAAGGTT
*
66475388 TTTGACAAAAATGTCAATT-AGGGATTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
* * *
66475416 TTTGAGAAAAGTGTAAATTGAGGGGTTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
66475445 ATCGTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (29 bp):
TTTGACAAAAATGTAAATTGAGGGATTAA
Found at i:66485150 original size:14 final size:15
Alignment explanation
Indices: 66485123--66485151 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
66485113 TATTTTCTGT
66485123 GTTTATTATGTGTGA
1 GTTTATTATGTGTGA
66485138 GTTTATT-TGTGTGA
1 GTTTATTATGTGTGA
66485152 AATTTTCGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (15 bp):
GTTTATTATGTGTGA
Found at i:66490571 original size:18 final size:18
Alignment explanation
Indices: 66490542--66490593 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
66490532 ACGCAGCACA
* *
66490542 TTGCATGGAATGTATGGT
1 TTGCATGAAATGTATGGG
* *
66490560 TTGCTTGAAATGCATGGG
1 TTGCATGAAATGTATGGG
*
66490578 TTGCATGGAATGTATG
1 TTGCATGAAATGTATG
66490594 AAATGCATGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.23, C:0.08, G:0.33, T:0.37
Consensus pattern (18 bp):
TTGCATGAAATGTATGGG
Found at i:66502889 original size:18 final size:18
Alignment explanation
Indices: 66502849--66502891 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
66502839 CTCACTTTTC
*
66502849 TAATCATCCCTCATCCCT
1 TAATCATCCCTCATCCAT
*
66502867 CAATCATCCCTCA-CTCAT
1 TAATCATCCCTCATC-CAT
66502885 TAATCAT
1 TAATCAT
66502892 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.33
Consensus pattern (18 bp):
TAATCATCCCTCATCCAT
Found at i:66505745 original size:26 final size:27
Alignment explanation
Indices: 66505675--66505747 Score: 78
Period size: 26 Copynumber: 2.7 Consensus size: 27
66505665 TTTCCCATGT
66505675 TTTACTATCTTAGCAGACTACCCTATG
1 TTTACTATCTTAGCAGACTACCCTATG
* * *
66505702 TTTATTGTCTTAGTAGACTA-CC-AGTG
1 TTTACTATCTTAGCAGACTACCCTA-TG
* *
66505728 TTTACTATCCTAGGAGACTA
1 TTTACTATCTTAGCAGACTA
66505748 TTCATGTTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.03
26 20 0.53
27 17 0.45
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (27 bp):
TTTACTATCTTAGCAGACTACCCTATG
Found at i:66508970 original size:46 final size:46
Alignment explanation
Indices: 66508875--66509083 Score: 176
Period size: 46 Copynumber: 4.5 Consensus size: 46
66508865 GTGTCGATGC
* * **
66508875 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCAATG
*
66508920 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCAATG
* * * ** * *
66508966 CATGTCGCAAACATGTCTTACACTAGCTCTCATCTCGATTCCGATTC
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC-AATG
* * *
66509013 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCAATG
* *
66509060 CATGTCCCAAACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
66509084 AGCACACAAG
Statistics
Matches: 131, Mismatches: 25, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
44 10 0.08
45 16 0.12
46 54 0.41
47 29 0.22
48 21 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
Found at i:66509026 original size:138 final size:143
Alignment explanation
Indices: 66508768--66509038 Score: 344
Period size: 138 Copynumber: 1.9 Consensus size: 143
66508758 AAGGTATAAT
*
66508768 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACAATCGAAATCGAGGCCAGCGCCATGTCCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGAC-ATCGAAATCGAGGCCAACGCCATGTCCC
66508833 AAACATGGTCTAACACTAGCTCTCACATATCCGTGTCGATGCCATGTCCCAGACATGGTCTTACA
65 AAACATGGTCTAACACTAGCTCT-ACATATCCGTGTCGATGCCATGTCCCAGACATGGTCTTACA
66508898 CTGACACATCTCGTA
129 CTGACACATCTCGTA
* * * * *
66508913 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGC-T-TACATCTTGAGGCCAATG-CATGTCG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACATCGAAATC--GAGGCCAACGCCATGTCC
* * *
66508973 CAAACAT-GTCTTACACTAGCTCT-CATCT-CGAT-TCCGATTCCATGTCCCAGACATGGTCTTA
64 CAAACATGGTCTAACACTAGCTCTACATATCCG-TGT-CGATGCCATGTCCCAGACATGGTCTTA
66509034 CACTG
127 CACTG
66509039 GCTCTCATAA
Statistics
Matches: 113, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
137 3 0.03
138 36 0.32
140 19 0.17
141 14 0.12
142 8 0.07
143 12 0.11
144 14 0.12
145 7 0.06
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (143 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGACATCGAAATCGAGGCCAACGCCATGTCCCA
AACATGGTCTAACACTAGCTCTACATATCCGTGTCGATGCCATGTCCCAGACATGGTCTTACACT
GACACATCTCGTA
Found at i:66509079 original size:140 final size:140
Alignment explanation
Indices: 66508825--66509083 Score: 330
Period size: 140 Copynumber: 1.8 Consensus size: 140
66508815 AGGCCAGCGC
66508825 CATGTCCCAAACATGGTCTAACACTAGCTCTCACATATCCGTGTCGATGCCATGTCCCAGACATG
1 CATGTCCCAAACATGGTCTAACACTAGCTCT-ACATATCCGTGTCGATGCCATGTCCCAGACATG
* * *
66508890 GTCTTACACTGACACATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
65 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAAACATATCTTACACTGGCTTACATCT
66508955 TGAGGCCAATG
130 TGAGGCCAATG
* * * *
66508966 CATGTCGCAAACAT-GTCTTACACTAGCTCT-CATCT-CGAT-TCCGATTCCATGTCCCAGACAT
1 CATGTCCCAAACATGGTCTAACACTAGCTCTACATATCCG-TGT-CGATGCCATGTCCCAGACAT
* * * *
66509027 GGTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGTCCCAAACATATCTTACACT
64 GGTCTTACACTGACACATC-T--CGTAGCCGATGCATGTCCCAAACATATCTTACACT
66509084 AGCACACAAG
Statistics
Matches: 102, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
137 5 0.05
138 39 0.38
140 45 0.44
141 13 0.13
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (140 bp):
CATGTCCCAAACATGGTCTAACACTAGCTCTACATATCCGTGTCGATGCCATGTCCCAGACATGG
TCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAAACATATCTTACACTGGCTTACATCTT
GAGGCCAATG
Found at i:66511225 original size:47 final size:48
Alignment explanation
Indices: 66511113--66511322 Score: 197
Period size: 47 Copynumber: 4.5 Consensus size: 48
66511103 AGGCCAACGC
* * * * *
66511113 CATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCCGTGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGA-CAC-CTCATATACGTGTCGATG
*
66511162 CCATGTCTCAGACATGGTCTTACACTGACACCTC-TATACGTGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGACACCTCATATACGTGTCGATG
* *
66511210 CATGTCCCAGACATGGTCTTACACTGACA--T-ATCT-CGTAGTCGATA
1 CATGTCCCAGACATGGTCTTACACTGACACCTCATATACGT-GTCGATG
* * *
66511255 CATGTCCCAGACATGGTCTTACACTG-GATCTCATAATA--TGGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGACACCTCAT-ATACGTGTC-GATG
66511302 CATGTCCCAGACAT-GTCTTAC
1 CATGTCCCAGACATGGTCTTAC
66511323 GCAAGCACAA
Statistics
Matches: 138, Mismatches: 13, Indels: 22
0.80 0.08 0.13
Matches are distributed among these distances:
44 4 0.03
45 35 0.25
46 10 0.07
47 48 0.35
48 13 0.09
49 2 0.01
50 25 0.18
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGACACCTCATATACGTGTCGATG
Found at i:66511267 original size:45 final size:46
Alignment explanation
Indices: 66511113--66511280 Score: 171
Period size: 45 Copynumber: 3.6 Consensus size: 46
66511103 AGGCCAACGC
* * * * *
66511113 CATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCCGTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGA-CACT---ATATACGTGTCGAT-A
* * *
66511163 CATGTCTCAGACATGGTCTTACACTGACACCTCTATACGTGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGACA-CTATATACGTGTCGATA
*
66511210 CATGTCCCAGACATGGTCTTACACTGACA-TATCT-CGTAGTCGATA
1 CATGTCCCAGACATGGTCTTACACTGACACTATATACGT-GTCGATA
66511255 CATGTCCCAGACATGGTCTTACACTG
1 CATGTCCCAGACATGGTCTTACACTG
66511281 GATCTCATAA
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
44 3 0.03
45 35 0.34
47 28 0.27
48 11 0.11
50 24 0.23
51 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGACACTATATACGTGTCGATA
Found at i:66515270 original size:47 final size:47
Alignment explanation
Indices: 66515170--66515403 Score: 423
Period size: 47 Copynumber: 4.9 Consensus size: 47
66515160 TAGTATGGCG
*
66515170 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
66515219 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66515266 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66515313 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
66515360 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66515404 TCCCGAAGGG
Statistics
Matches: 182, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 153 0.84
49 29 0.16
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:66515576 original size:37 final size:37
Alignment explanation
Indices: 66515520--66515598 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66515510 CCGAGCTCTA
* *
66515520 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66515557 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66515594 AAGAC
1 AAGAC
66515599 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66517512 original size:43 final size:43
Alignment explanation
Indices: 66517464--66517609 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
66517454 TTGGTTTTCA
66517464 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
66517507 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
66517550 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
66517593 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
66517610 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:66517626 original size:29 final size:29
Alignment explanation
Indices: 66517591--66517664 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
66517581 GTTGTGAGAT
* *
66517591 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
66517620 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
66517649 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
66517665 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:66518102 original size:40 final size:40
Alignment explanation
Indices: 66517975--66518197 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
66517965 TCGAATGATG
* *
66517975 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * * *
66518015 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * *
66518055 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
66518095 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
66518135 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
66518175 TCCAGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
66518198 ATCATGCTGG
Statistics
Matches: 149, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
40 131 0.88
41 18 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:66522143 original size:47 final size:47
Alignment explanation
Indices: 66522031--66522263 Score: 423
Period size: 47 Copynumber: 4.9 Consensus size: 47
66522021 TAGTATGGCG
66522031 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
66522079 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66522126 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66522173 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
66522220 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66522264 TCCCGAAGGG
Statistics
Matches: 182, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
46 12 0.07
47 141 0.77
48 29 0.16
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:66537401 original size:45 final size:47
Alignment explanation
Indices: 66537290--66537407 Score: 134
Period size: 45 Copynumber: 2.6 Consensus size: 47
66537280 GTGTCGATGC
* *
66537290 CATGTCCCAGACATAGTCTTACACTGACACCTTTATACGTACCGATG
1 CATGTCCCAGACATAGTCTTACACTGACACCTATATACGTACCGATA
* * * **
66537337 CATGTCCCAAACATGGTCTTACACTGACA-C-ATCT-CGTAGTGGATA
1 CATGTCCCAGACATAGTCTTACACTGACACCTATATACGTA-CCGATA
*
66537382 CATGTCCCAGACATCGTCTTACACTG
1 CATGTCCCAGACATAGTCTTACACTG
66537408 GCTCTCATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
44 4 0.07
45 29 0.48
46 1 0.02
47 27 0.44
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATAGTCTTACACTGACACCTATATACGTACCGATA
Found at i:66538747 original size:26 final size:26
Alignment explanation
Indices: 66538679--66538753 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
66538669 CTGTAAACGA
* *
66538679 TAAGCTCCTTCAAGCTAAAATAATAG
1 TAAGCTCCTCCGAGCTAAAATAATAG
*
66538705 TAAGCTCCTCTGAGCTAAAATAAT-G
1 TAAGCTCCTCCGAGCTAAAATAATAG
* *
66538730 ATAAGCTTCTCCGTGCTAAAATAA
1 -TAAGCTCCTCCGAGCTAAAATAA
66538754 CGGTAACCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.02
26 41 0.98
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (26 bp):
TAAGCTCCTCCGAGCTAAAATAATAG
Found at i:66546295 original size:26 final size:26
Alignment explanation
Indices: 66546267--66546374 Score: 126
Period size: 26 Copynumber: 4.2 Consensus size: 26
66546257 GTTGCAAACG
* * *
66546267 GTAAGCTCATCCGAGCTAAAATAATG
1 GTAAACTCCTCCGAGCTAAAATAATA
* * * *
66546293 GTAAGCTCCTCCGAGTTGAAATAACA
1 GTAAACTCCTCCGAGCTAAAATAATA
* * *
66546319 CTAAACTCCTCCGAGCTGAAATAAAA
1 GTAAACTCCTCCGAGCTAAAATAATA
66546345 GTAAACTCCTCCGAGCTAAAATAATA
1 GTAAACTCCTCCGAGCTAAAATAATA
66546371 GTAA
1 GTAA
66546375 CCCTAATGAC
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (26 bp):
GTAAACTCCTCCGAGCTAAAATAATA
Found at i:66546919 original size:21 final size:21
Alignment explanation
Indices: 66546895--66546950 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
66546885 AAGTTGTTTA
66546895 TCTAACA-ACAACCATTCTTTT
1 TCTAACATA-AACCATTCTTTT
*
66546916 TCTATCATTAAACCATTCTTTT
1 TCTAACA-TAAACCATTCTTTT
*
66546938 TCTATCATTAAAC
1 TCTAACA-TAAAC
66546951 TTCAAAACCC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 6 0.19
22 25 0.78
23 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.43
Consensus pattern (21 bp):
TCTAACATAAACCATTCTTTT
Found at i:66546929 original size:22 final size:22
Alignment explanation
Indices: 66546904--66546950 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
66546894 ATCTAACAAC
66546904 AACCATTCTTTTTCTATCATTA
1 AACCATTCTTTTTCTATCATTA
66546926 AACCATTCTTTTTCTATCATTA
1 AACCATTCTTTTTCTATCATTA
66546948 AAC
1 AAC
66546951 TTCAAAACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (22 bp):
AACCATTCTTTTTCTATCATTA
Found at i:66561457 original size:203 final size:203
Alignment explanation
Indices: 66561105--66561510 Score: 489
Period size: 203 Copynumber: 2.0 Consensus size: 203
66561095 ATTTTAATTC
* * * *
66561105 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCATTTAGTATTTTATATAT
1 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATATTTTATAAAA
* * * * *** *
66561170 ATGTGTTAGAGTTATTTTAATAATTTTTCTTTATTTTTATTTGTATAATTATTTTGAAGTTTATT
66 ATGTGTTAGAGCTATTTTAACAACTTTACTTTATTTTTATTAAAATAATTATTTTAAAGTTTATT
* * * *
66561235 TATTATATCATATTATTTTAGCATTTCATATAATATTTGGTTTAAATATTTTTATATATATTTGT
131 TATCATATCATACTATTTTAACATTTCATATAATATTTGGTTCAAATATTTTTATATATATTTGT
66561300 ACAGATAT
196 ACAGATAT
* *
66561308 TATTTTAATTGAGTTTTCTATTTGTA-ATACTTATTATTTTAAAATTCACTTAATATTTTTTTAA
1 TATTTTAATTGAGTTTTCTATTTGTATA-ACTTACTATTTTAAAATTCACTTAATA-TTTTATAA
* *
66561372 AAACTGTGTT-GAGCTATTTTTAACAACTTTACTTTGTTTTTA-TAAAATCATTATTTTAAAGTT
64 AAA-TGTGTTAGAGCTA-TTTTAACAACTTTACTTTATTTTTATTAAAATAATTATTTTAAAGTT
* * * * * *
66561435 CT-TTT-TCATATCATACTATTTTAATATTTTATGTAATATTTTGTTCAAGTGTTTTTATATATA
127 -TATTTATCATATCATACTATTTTAACATTTCATATAATATTTGGTTCAAATATTTTTATATATA
*
66561498 TTTGTACATATAT
191 TTTGTACAGATAT
66561511 AATTCATGGT
Statistics
Matches: 171, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
202 1 0.01
203 110 0.64
204 32 0.19
205 28 0.16
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (203 bp):
TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATATTTTATAAAA
ATGTGTTAGAGCTATTTTAACAACTTTACTTTATTTTTATTAAAATAATTATTTTAAAGTTTATT
TATCATATCATACTATTTTAACATTTCATATAATATTTGGTTCAAATATTTTTATATATATTTGT
ACAGATAT
Found at i:66567713 original size:48 final size:48
Alignment explanation
Indices: 66567661--66567757 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
66567651 GCTAAAGAGG
*
66567661 AAGGGTGTATATGCGCATCAGAATCCACAATGAATGTCCCGAAAGTCA
1 AAGGGTGTATATGCGCATCAAAATCCACAATGAATGTCCCGAAAGTCA
* *
66567709 AAGGGTGTATATGCGCGTCAAAATCCACAATGAATGTCTCGAAAGTCA
1 AAGGGTGTATATGCGCATCAAAATCCACAATGAATGTCCCGAAAGTCA
66567757 A
1 A
66567758 TTATCCTGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (48 bp):
AAGGGTGTATATGCGCATCAAAATCCACAATGAATGTCCCGAAAGTCA
Found at i:66574662 original size:177 final size:177
Alignment explanation
Indices: 66574387--66574876 Score: 576
Period size: 177 Copynumber: 2.8 Consensus size: 177
66574377 AAAGACGGCA
* * * ** * * **
66574387 AATCTTATCTCCATGTATCGGCAATGGAGCATATTTAAGCCATTAGCCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCATGTATCGGAAATGAAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAA
* * * * ** * * *
66574452 C-AGTGGAGCAGGCTCAATATACAAGTCTTATCTTCTTGAGGTAGAAAGGAAGCAGACTGAAGAC
66 CAAG-AGAGCAGGTTGAAGATTGAAGTATTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGAT
*
66574516 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGATGATG
130 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGA-GACG
* * *
66574564 AATCTTATCTCCATGTATTGGAAATGAAGCAGATTTTAA-CCACTAGCCTTATCTCTTTGAGGTA
1 AATCTTATCTCCATGTATCGGAAATGAAGCAGA-TTTAAGCCACCAGCCTTATCTCTCTGAGGTA
**
66574628 ACAAGAGAGCAGGTTGAAGATTGTGGTATTATCTT-TCTGAGGTAGCAAGGAAGCAGACTGAAGA
65 ACAAGAGAGCAGGTTGAAGATTGAAGTATTATCTTCT-TGAGGTAGCAAGGAAGCAGACTGAAGA
* * * *
66574692 TTGAAGATCTTGTCTCCTTAAGCAGTAGTGGAGTAGATCGAAAGAGGCG
129 TTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGACG
* * * *
66574741 AATCTTATCTCTATGTATCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGAAATGAAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAA
* * * **
66574806 TAAGAGAGTAGGTTGAAGATTGAAGTCTTATCTTC-CAAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGAAGTATTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATT
66574870 GAAGATC
131 GAAGATC
66574877 GAAGCAGACT
Statistics
Matches: 267, Mismatches: 40, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
176 40 0.15
177 216 0.81
178 11 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (177 bp):
AATCTTATCTCCATGTATCGGAAATGAAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAA
CAAGAGAGCAGGTTGAAGATTGAAGTATTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGACG
Found at i:66574880 original size:24 final size:24
Alignment explanation
Indices: 66574853--66574900 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
66574843 AGGTAGCAAG
66574853 GAAGCAGACTGAAGATTGAAGATC
1 GAAGCAGACTGAAGATTGAAGATC
66574877 GAAGCAGACTGAAGATTGAAGATC
1 GAAGCAGACTGAAGATTGAAGATC
66574901 TTATCTCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.29, T:0.17
Consensus pattern (24 bp):
GAAGCAGACTGAAGATTGAAGATC
Found at i:66575034 original size:200 final size:200
Alignment explanation
Indices: 66574677--66575038 Score: 559
Period size: 200 Copynumber: 1.8 Consensus size: 200
66574667 AGGTAGCAAG
* * * *
66574677 GAAGCAGACTGAAGATTGAAGATCTTGTCTCCTTAAGCAGTAGTGGAGTAGATCGAAAGAGGCGA
1 GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGCGA
* * *
66574742 ATCTTATCTCTATGTATCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGT
66 ATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGT
* *
66574807 AAGAGAGTAGGTTGAAGATTGAAGTCTTATCTTCCAAGGTAGCAAGGAAGCAGACTGAAGATTGA
131 AAGAGAGCAGGTTCAAGATTGAAGTCTTATCTTCCAAGGTAGCAAGGAAGCAGACTGAAGATTGA
66574872 AGATC
196 AGATC
*
66574877 GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGTGA
1 GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGCGA
* *
66574942 ATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCC-CCAAGGCTTATCTCCCTGAAGTTG
66 ATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACC-AGCCTTATCTCCCTGAAGTAG
*
66575006 -CAGTAGAGCAGGTTCAAGATAT-AAGTCTTATCT
130 TAAG-AGAGCAGGTTCAAGAT-TGAAGTCTTATCT
66575039 CCTTAAGCAG
Statistics
Matches: 146, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
199 4 0.03
200 141 0.97
201 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (200 bp):
GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGCGA
ATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAGT
AAGAGAGCAGGTTCAAGATTGAAGTCTTATCTTCCAAGGTAGCAAGGAAGCAGACTGAAGATTGA
AGATC
Found at i:66575136 original size:132 final size:132
Alignment explanation
Indices: 66574899--66575141 Score: 312
Period size: 132 Copynumber: 1.8 Consensus size: 132
66574889 AGATTGAAGA
* *
66574899 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGTGAATCTTATCTCCATGTATCGGTA
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATAGAAAGAGGTGAATCTTATCTCCATGTATCGGCA
* ** * *
66574964 ATGGAGCAGATTTAAGCCCCAAGGCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTCAAGATATA
66 ATAGAGCAGATTTAAGCCCCAAGGCCCATCTCCCTAAAGTTACAGTAGAGCAGGTTCAAGATATA
66575029 AG
131 AG
* * * *
66575031 TCTTATCTCCTTAAGCAGTTGAGGAGCAGATCG-AGGATGGTGAATCTTATCTCCATGTATCGGC
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATAGAAAGA-GGTGAATCTTATCTCCATGTATCGGC
* * *
66575095 AATAGAGTAGATTT-AGACCACC-AGTCCCATTTCCCTAAAGTTACAGT
65 AATAGAGCAGATTTAAG-CC-CCAAGGCCCATCTCCCTAAAGTTACAGT
66575142 CGAGATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
131 5 0.05
132 87 0.93
133 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCCTAAGCAGTAGAGGAGCAGATAGAAAGAGGTGAATCTTATCTCCATGTATCGGCA
ATAGAGCAGATTTAAGCCCCAAGGCCCATCTCCCTAAAGTTACAGTAGAGCAGGTTCAAGATATA
AG
Found at i:66575211 original size:42 final size:42
Alignment explanation
Indices: 66575152--66575232 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
66575142 CGAGATTCAA
*
66575152 CAAAATCGGGCAAAATTAGCCATATTTGAAGTCTTTGCTAAG
1 CAAAATAGGGCAAAATTAGCCATATTTGAAGTCTTTGCTAAG
* *
66575194 CAAAATAGGGTAAAATTAGCCCTATTTGAAGTCTTTGCT
1 CAAAATAGGGCAAAATTAGCCATATTTGAAGTCTTTGCT
66575233 CTATTCTCGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (42 bp):
CAAAATAGGGCAAAATTAGCCATATTTGAAGTCTTTGCTAAG
Found at i:66575347 original size:24 final size:23
Alignment explanation
Indices: 66575300--66575346 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
66575290 CCGAGCCCCT
66575300 TAAAAAAATAGAAATTAAAAAAAA
1 TAAAAAAATA-AAATTAAAAAAAA
66575324 TAAAAAAAT-AAATTAAAATAAAA
1 TAAAAAAATAAAATTAAAA-AAAA
66575347 ACCAATAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.41
23 4 0.18
24 9 0.41
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (23 bp):
TAAAAAAATAAAATTAAAAAAAA
Found at i:66576848 original size:203 final size:201
Alignment explanation
Indices: 66576498--66576901 Score: 510
Period size: 203 Copynumber: 2.0 Consensus size: 201
66576488 ATTTTAATTC
* * * *
66576498 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTATAATTCATTTAATATTTTATATAT
1 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATATTTTATAAAA
* * * ***
66576563 ATGTGTTGAGTTATTTTAATAATTTTGCTTTGTTTTTATTTGTATAATTATTTTGAAATTCTTTT
66 ATGTGTTGAGCTATTTTAATAACTTTACTTTGTTTTTATTAAAATAATTATTTTGAAATTCTTTT
* * * * *
66576628 TTATATCATATTATTTTAACATTTTGTAG-AATATTTGGTTTAAATATTTTTTTATATATTTGTA
131 TCATATCATACTATTTTAACATTTTAT-GTAATATTTGGTTCAAATATTTTTATATATATTTGTA
66576692 CATATAT
195 CATATAT
* * * *
66576699 TATTTTAATTGAGTTTTCTATTTGTA-ATACTTATTTTTTTAAAATTTACTTAATATTTTTTTAA
1 TATTTTAATTGAGTTTTCTATTTGTATA-ACTTACTATTTTAAAATTCACTTAATA-TTTTATAA
*
66576763 AAATTGTGTTGAGCTATTTTTAATAACTTTACTTTGTTTTTA-TAAAATCATTATTTT-AAAGTT
64 AAA-TGTGTTGAGCTA-TTTTAATAACTTTACTTTGTTTTTATTAAAATAATTATTTTGAAA-TT
* * * *
66576826 CTTTTTCATATCATACTATTTTAATATTTTATGTAATATTTTGTTCAAGTGTTTTTATATATATT
126 CTTTTTCATATCATACTATTTTAACATTTTATGTAATATTTGGTTCAAATATTTTTATATATATT
66576891 TGTACATATAT
191 TGTACATATAT
66576902 AATTCATGGT
Statistics
Matches: 173, Mismatches: 24, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
200 1 0.01
201 48 0.28
202 12 0.07
203 89 0.51
204 23 0.13
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.58
Consensus pattern (201 bp):
TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATATTTTATAAAA
ATGTGTTGAGCTATTTTAATAACTTTACTTTGTTTTTATTAAAATAATTATTTTGAAATTCTTTT
TCATATCATACTATTTTAACATTTTATGTAATATTTGGTTCAAATATTTTTATATATATTTGTAC
ATATAT
Found at i:66580573 original size:28 final size:29
Alignment explanation
Indices: 66580533--66580600 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
66580523 ATGAAAATTT
** *
66580533 CACTAAGCATGCGAG-TTTGGTTAAT-GAG
1 CACTAAGTGTGCGAGTTTTGATT-ATCGAG
66580561 CACTAAGTGTGCGAGTTTTGATTATCGAG
1 CACTAAGTGTGCGAGTTTTGATTATCGAG
66580590 CACTAAGTGTG
1 CACTAAGTGTG
66580601 TGAAGGAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 15 0.43
29 20 0.57
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTTTGATTATCGAG
Found at i:66583019 original size:28 final size:28
Alignment explanation
Indices: 66582919--66583024 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 28
66582909 ACTTGTAATA
* * **
66582919 GGGCTATGGCCCAGATTGATGCTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
*
66582947 GGGCT-AGGCCCAGTATACTCTAATATTG-TAAG
1 GGGCTAAGGCCCAG---A-T-TAATATTGAT-AT
* *
66582979 GGGCTATGACCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
66583007 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
66583025 CTCTGATTTC
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
27 11 0.18
28 26 0.43
29 2 0.03
30 2 0.03
31 2 0.03
32 11 0.18
33 6 0.10
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:66585623 original size:41 final size:42
Alignment explanation
Indices: 66585578--66585827 Score: 215
Period size: 41 Copynumber: 6.1 Consensus size: 42
66585568 CAAAAAACTC
*
66585578 AGCAATAGCTGCGTTTTTGGTCCAAACGCCACTAAAAA-TTG
1 AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
* * *
66585619 AGCAATAGCAGCGTTTGTGGTCAAAACGCCACTAAAAA-CTG
1 AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
* * * *
66585660 AGTAGTAGCAGCGTTTTTGGTCAAAACGCCACTAAAAA-CTG
1 AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
* * * * * * *
66585701 AGCAATAACGGTGTTTTTGGTACAAATGCCGCTAAAAACTT-
1 AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
* * ** *
66585742 AGCAATAGCGGCTTTTTTAATCCAAATGCCA-TAAAAAGTTG
1 AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
* * ** * * *
66585783 ATCTATAGTGGCGTTTTTAGTCCAAACGGCGC-AAAAAGTTG
1 AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
66585824 AGCA
1 AGCA
66585828 GCCATTTTCG
Statistics
Matches: 171, Mismatches: 35, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
40 8 0.05
41 162 0.95
42 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (42 bp):
AGCAATAGCAGCGTTTTTGGTCCAAACGCCACTAAAAAGTTG
Found at i:66586165 original size:15 final size:14
Alignment explanation
Indices: 66586107--66586178 Score: 54
Period size: 14 Copynumber: 5.0 Consensus size: 14
66586097 AACCACTAAT
*
66586107 CCCTAAACCTTAAA
1 CCCTAAACCTAAAA
* *
66586121 CCTTAAATTCTAAAA
1 CCCTAAA-CCTAAAA
* * * *
66586136 ACATAAACATTAAA
1 CCCTAAACCTAAAA
66586150 CCCTAAACCCTAAAA
1 CCCTAAA-CCTAAAA
*
66586165 CTCTAAACCTAAAA
1 CCCTAAACCTAAAA
66586179 AAATCATATG
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
14 22 0.51
15 21 0.49
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAAACCTAAAA
Found at i:66586295 original size:7 final size:7
Alignment explanation
Indices: 66586284--66586354 Score: 61
Period size: 7 Copynumber: 10.0 Consensus size: 7
66586274 TTTATTTTTG
*
66586284 GGTTTAG
1 GGTTTAA
66586291 GGTTTAA
1 GGTTTAA
**
66586298 TATTTAA
1 GGTTTAA
66586305 GGTTTAA
1 GGTTTAA
66586312 GGTTTAA
1 GGTTTAA
* *
66586319 GGTCTAT
1 GGTTTAA
*
66586326 GGTTTAG
1 GGTTTAA
*
66586333 GGTTTTAT
1 GG-TTTAA
*
66586341 GGTTTAT
1 GGTTTAA
66586348 GGTTTAA
1 GGTTTAA
66586355 TGATCAGTAT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
7 46 0.88
8 6 0.12
ACGTcount: A:0.23, C:0.01, G:0.28, T:0.48
Consensus pattern (7 bp):
GGTTTAA
Found at i:66586608 original size:7 final size:7
Alignment explanation
Indices: 66586598--66586656 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
66586588 GTAATATATA
66586598 TTTAAGG
1 TTTAAGG
*
66586605 TTTAGGG
1 TTTAAGG
** *
66586612 TTTGTGA
1 TTTAAGG
66586619 TTTAAGG
1 TTTAAGG
66586626 TTTAAGG
1 TTTAAGG
66586633 TTTAAGG
1 TTTAAGG
*
66586640 TTTAGGG
1 TTTAAGG
*
66586647 TTTAGGG
1 TTTAAGG
66586654 TTT
1 TTT
66586657 CATTTTGTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:66586623 original size:21 final size:21
Alignment explanation
Indices: 66586597--66586656 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
66586587 TGTAATATAT
**
66586597 ATTTAAGGTTTAGGGTTTGTG
1 ATTTAAGGTTTAGGGTTTAAG
*
66586618 ATTTAAGGTTTAAGGTTTAAG
1 ATTTAAGGTTTAGGGTTTAAG
* *
66586639 GTTTAGGGTTTAGGGTTT
1 ATTTAAGGTTTAGGGTTT
66586657 CATTTTGTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.47
Consensus pattern (21 bp):
ATTTAAGGTTTAGGGTTTAAG
Found at i:66586939 original size:40 final size:40
Alignment explanation
Indices: 66586832--66586939 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
66586822 ATCTAGTGGC
* * * * * *
66586832 ATTAGCGGCGTTTTTTTAAAAACGCCACTAAAGATCGAGT
1 ATTAGCGGTGCTTTTTAAAAAACGCCGCTAAAGATCAAGA
66586872 ATTAGCGGTGCTTTTTAAAAAACGCCGCTAAAGATCAAGA
1 ATTAGCGGTGCTTTTTAAAAAACGCCGCTAAAGATCAAGA
* *
66586912 ATTAGCGGTGCTTTTTCAAAAATGCCGC
1 ATTAGCGGTGCTTTTTAAAAAACGCCGC
66586940 AAAAAGTTTA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (40 bp):
ATTAGCGGTGCTTTTTAAAAAACGCCGCTAAAGATCAAGA
Found at i:66587195 original size:165 final size:165
Alignment explanation
Indices: 66586989--66587338 Score: 427
Period size: 165 Copynumber: 2.1 Consensus size: 165
66586979 TTAGTGACCT
* * *
66586989 TAAATGTCAAGCATTAGTGGCGCTAGTGTAAAAACGCCACTAAATGTCGAGCATTA-TCACCGCT
1 TAAATGTCAAACATTAGTGGCACTAGTGTAAAAACGCCACTAAATGTCGAGCATTAGTCA-CACT
* * ** *
66587053 ATTGGGAAAACGCCACAAATATATATGGGCATTAAGCTTGACAACGTCATTTTATCAAAAAGGCA
65 ATTGGGAAAACGCCACAAATAAATATGAGCAGAAAGCTAGACAACGTCATTTTATCAAAAAGGC-
* **
66587118 CCAAAAAT-GTTAGCGGTGCTACTGGGAAAACGCCGC
129 CCAAAAATCATTAGCGGCACTACTGGGAAAACGCCGC
* * *
66587154 TAAATGTCAAACATTAGTGGCACTA-TAGTAAAAATGCCACTAAATGTTGAGCATTAGTGACACT
1 TAAATGTCAAACATTAGTGGCACTAGT-GTAAAAACGCCACTAAATGTCGAGCATTAGTCACACT
* * ** * *
66587218 CTTGGGAAAATGCTGCAAATAAATATGAGCAGAAAGCTAGACGACGTCATTTTATCAAAAAGGCG
65 ATTGGGAAAACGCCACAAATAAATATGAGCAGAAAGCTAGACAACGTCATTTTATCAAAAAGGCC
* * *
66587283 CAAAAATCATTAGCGGCACTATTGGGTAAACGCTGC
130 CAAAAATCATTAGCGGCACTACTGGGAAAACGCCGC
* *
66587319 TAAATTTCAATCATTAGTGG
1 TAAATGTCAAACATTAGTGG
66587339 TGTTATTATA
Statistics
Matches: 157, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
164 8 0.05
165 147 0.94
166 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (165 bp):
TAAATGTCAAACATTAGTGGCACTAGTGTAAAAACGCCACTAAATGTCGAGCATTAGTCACACTA
TTGGGAAAACGCCACAAATAAATATGAGCAGAAAGCTAGACAACGTCATTTTATCAAAAAGGCCC
AAAAATCATTAGCGGCACTACTGGGAAAACGCCGC
Found at i:66591357 original size:20 final size:18
Alignment explanation
Indices: 66591334--66591372 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
66591324 AAATAAATTT
66591334 AATTCATAAAAATATATATA
1 AATTCA-AAAAATAT-TATA
*
66591354 AATTCAAAACATATTATA
1 AATTCAAAAAATATTATA
66591372 A
1 A
66591373 CCAAAACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (18 bp):
AATTCAAAAAATATTATA
Found at i:66591508 original size:49 final size:49
Alignment explanation
Indices: 66591447--66591549 Score: 170
Period size: 49 Copynumber: 2.1 Consensus size: 49
66591437 ATTTAATCCA
* *
66591447 ATAATTTCCTTAAAAGTATTTAGTTTAAAGTTTAAATTTCATAACTTGC
1 ATAATTTCCTTAAAAGTATATAGTTTAAAGTTTAAATTTCATAACTTAC
* *
66591496 ATAATTTCCTTAAAATTGTATAGTTTAAAGTTTAAATTTCATAACTTAC
1 ATAATTTCCTTAAAAGTATATAGTTTAAAGTTTAAATTTCATAACTTAC
66591545 ATAAT
1 ATAAT
66591550 ACATAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.45
Consensus pattern (49 bp):
ATAATTTCCTTAAAAGTATATAGTTTAAAGTTTAAATTTCATAACTTAC
Found at i:66591581 original size:9 final size:9
Alignment explanation
Indices: 66591569--66591618 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
66591559 TATATCATAT
*
66591569 CATACCTCA
1 CATAACTCA
*
66591578 CATAACTTA
1 CATAACTCA
66591587 CATAACTCA
1 CATAACTCA
* *
66591596 AATAACTTA
1 CATAACTCA
*
66591605 CATAACTTA
1 CATAACTCA
66591614 CATAA
1 CATAA
66591619 TACATAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (9 bp):
CATAACTCA
Found at i:66591590 original size:18 final size:18
Alignment explanation
Indices: 66591569--66591618 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
66591559 TATATCATAT
*
66591569 CATACCTCACATAACTTA
1 CATAACTCACATAACTTA
*
66591587 CATAACTCAAATAACTTA
1 CATAACTCACATAACTTA
*
66591605 CATAACTTACATAA
1 CATAACTCACATAA
66591619 TACATAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (18 bp):
CATAACTCACATAACTTA
Found at i:66591640 original size:5 final size:5
Alignment explanation
Indices: 66591630--66591667 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
66591620 ACATAAATAG
66591630 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATA
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATA
66591668 ACTTACATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATC
Found at i:66596733 original size:13 final size:14
Alignment explanation
Indices: 66596717--66596745 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
66596707 TTTTAAATAT
66596717 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
66596730 TTATAATGGTTTAA
1 TTATAATGGTTTAA
66596744 TT
1 TT
66596746 TGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:66597695 original size:43 final size:42
Alignment explanation
Indices: 66597648--66597756 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
66597638 ACAAATGCTA
* * * * *
66597648 CTAAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGCGCCG
1 CTAAAGGTCACGTTCTTTAGCGGCGCTT-TCTCAAAAACACCG
*
66597691 CTAAAGGTCACGTTCTTTAGCGGTGCTTTCTCAAAAACACCG
1 CTAAAGGTCACGTTCTTTAGCGGCGCTTTCTCAAAAACACCG
* *
66597733 CTAAAAGTCATGTTCTTTAGCGGC
1 CTAAAGGTCACGTTCTTTAGCGGC
66597757 ATTTTTTACA
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 31 0.54
43 26 0.46
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (42 bp):
CTAAAGGTCACGTTCTTTAGCGGCGCTTTCTCAAAAACACCG
Found at i:66598546 original size:19 final size:20
Alignment explanation
Indices: 66598522--66598560 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
66598512 GTCCCATTAT
66598522 TTATTTA-TTTTTTGTTTTA
1 TTATTTATTTTTTTGTTTTA
66598541 TTATTTATTTTTTTGTTTTA
1 TTATTTATTTTTTTGTTTTA
66598561 AATGTATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.79
Consensus pattern (20 bp):
TTATTTATTTTTTTGTTTTA
Found at i:66598568 original size:19 final size:20
Alignment explanation
Indices: 66598529--66598569 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
66598519 TATTTATTTA
* *
66598529 TTTTTTGTTTTATTATTTAT
1 TTTTTTGTTTTATAATGTAT
66598549 TTTTTTGTTTTA-AATGTAT
1 TTTTTTGTTTTATAATGTAT
66598568 TT
1 TT
66598570 GATTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTTTTGTTTTATAATGTAT
Found at i:66605977 original size:12 final size:12
Alignment explanation
Indices: 66605960--66605986 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66605950 TTCCTTTCGA
66605960 TTTTAATACTAG
1 TTTTAATACTAG
66605972 TTTTAATACTAG
1 TTTTAATACTAG
66605984 TTT
1 TTT
66605987 AAAACTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (12 bp):
TTTTAATACTAG
Found at i:66608743 original size:21 final size:21
Alignment explanation
Indices: 66608719--66608760 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
66608709 ATTAACAAAC
*
66608719 AAACAAAATGATTTGGGGAAA
1 AAACAAAAGGATTTGGGGAAA
* *
66608740 AAACTAACGGATTTGGGGAAA
1 AAACAAAAGGATTTGGGGAAA
66608761 TTACAGCAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.07, G:0.26, T:0.19
Consensus pattern (21 bp):
AAACAAAAGGATTTGGGGAAA
Found at i:66614245 original size:41 final size:40
Alignment explanation
Indices: 66614150--66614326 Score: 131
Period size: 41 Copynumber: 4.3 Consensus size: 40
66614140 TATTCTCAGT
* * * ***
66614150 GTTTATGGGAAAAATGTCGCTATTGCTTTA-CTTTTAATAGC
1 GTTTAT-GCAAAAATGCCGCTATTGTTTTACCTTTTGCGA-C
* * ** * **
66614191 GTTTATGGAAAAAATACCGCTATCATTTTAGCCTTTTGTGGT
1 GTTTAT-GCAAAAATGCCGCTATTGTTTTA-CCTTTTGCGAC
* *
66614233 GTTTATGCAAAAATGCCGCCATTGGTTTAACCTTTTGCGAC
1 GTTTATGCAAAAATGCCGCTATT-GTTTTACCTTTTGCGAC
* *
66614274 GTTTATGCAAAAATGCTGCTATTGTTTTACCTTTTGCGGC
1 GTTTATGCAAAAATGCCGCTATTGTTTTACCTTTTGCGAC
* *
66614314 ATTTATGAAAAAA
1 GTTTATGCAAAAA
66614327 AGGCCACTAA
Statistics
Matches: 107, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
40 26 0.24
41 66 0.62
42 10 0.09
43 5 0.05
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (40 bp):
GTTTATGCAAAAATGCCGCTATTGTTTTACCTTTTGCGAC
Found at i:66614327 original size:41 final size:40
Alignment explanation
Indices: 66614189--66614326 Score: 141
Period size: 41 Copynumber: 3.4 Consensus size: 40
66614179 ACTTTTAATA
* ** *
66614189 GCGTTTATGGAAAAAATACCGCTATCATTTTAGCCTTTTGTG
1 GCGTTTAT-GAAAAAATGCCGCTATTGTTTTA-CCTTTTGCG
* * * *
66614231 GTGTTTATGCAAAAATGCCGCCATTGGTTTAACCTTTTGCG
1 GCGTTTATGAAAAAATGCCGCTATT-GTTTTACCTTTTGCG
* * *
66614272 ACGTTTATGCAAAAATGCTGCTATTGTTTTACCTTTTGCG
1 GCGTTTATGAAAAAATGCCGCTATTGTTTTACCTTTTGCG
*
66614312 GCATTTATGAAAAAA
1 GCGTTTATGAAAAAA
66614327 AGGCCACTAA
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 26 0.33
41 42 0.53
42 11 0.14
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (40 bp):
GCGTTTATGAAAAAATGCCGCTATTGTTTTACCTTTTGCG
Found at i:66620567 original size:38 final size:38
Alignment explanation
Indices: 66620525--66620602 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
66620515 TAATTTTTGT
*
66620525 ATAAGAGTTTTATAGTTCTATCAAGTGATATTCAAGCC
1 ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
66620563 ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
1 ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
66620601 AT
1 AT
66620603 GTAATTTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (38 bp):
ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
Found at i:66620963 original size:27 final size:27
Alignment explanation
Indices: 66620930--66621128 Score: 249
Period size: 27 Copynumber: 7.4 Consensus size: 27
66620920 TTTTTTGTTG
66620930 TTTAGTAATTCTACCCTACAGGGGT-T
1 TTTAGTAATTCTACCCTACAGGGGTAT
66620956 TTTCAGTAATTCTACCCTACAGGGGTAT
1 TTT-AGTAATTCTACCCTACAGGGGTAT
66620984 TTTAGTAATTCTACCCTACAGGGGTAT
1 TTTAGTAATTCTACCCTACAGGGGTAT
* * * * *
66621011 TTTGGTATTTTTACCCTATAAGGGTAT
1 TTTAGTAATTCTACCCTACAGGGGTAT
** *
66621038 TTCGGTAATTCTACCCTACAAGGGTA-
1 TTTAGTAATTCTACCCTACAGGGGTAT
* * *
66621064 TTTCGATAATTCTACCCTATAGTGGTAT
1 TTTAG-TAATTCTACCCTACAGGGGTAT
* *
66621092 TTTAGTAATTTTACCCTACAAGGGTAT
1 TTTAGTAATTCTACCCTACAGGGGTAT
66621119 TTTAGTAATT
1 TTTAGTAATT
66621129 TTACAAATCA
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
26 6 0.04
27 136 0.91
28 8 0.05
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (27 bp):
TTTAGTAATTCTACCCTACAGGGGTAT
Found at i:66621076 original size:81 final size:81
Alignment explanation
Indices: 66620930--66621155 Score: 276
Period size: 81 Copynumber: 2.8 Consensus size: 81
66620920 TTTTTTGTTG
* * * * *
66620930 TTTAGTAATTCTACCCTACAGGGGTTTTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTC
1 TTTAGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTGAGTAATTC
66620995 TACCCTACAGGGGTAT
66 TACCCTACAGGGGTAT
* * * *
66621011 TTTGGTATTTTTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGA-TAATT
1 TTTAGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT-GAGTAATT
* *
66621075 CTACCCTATAGTGGTAT
65 CTACCCTACAGGGGTAT
* * ** *
66621092 TTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTA-CAAATCAAGGGTATTTCAGTAATT
1 TTTAGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTA-CAAGGGTATTTGAGTAATT
66621156 TTGCAAACTG
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.02
81 118 0.97
82 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (81 bp):
TTTAGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTGAGTAATTC
TACCCTACAGGGGTAT
Found at i:66621129 original size:27 final size:27
Alignment explanation
Indices: 66620930--66621155 Score: 244
Period size: 27 Copynumber: 8.4 Consensus size: 27
66620920 TTTTTTGTTG
*
66620930 TTTAGTAATTCTACCCTACAGGGGT-T
1 TTTAGTAATTCTACCCTACAAGGGTAT
*
66620956 TTTCAGTAATTCTACCCTACAGGGGTAT
1 TTT-AGTAATTCTACCCTACAAGGGTAT
*
66620984 TTTAGTAATTCTACCCTACAGGGGTAT
1 TTTAGTAATTCTACCCTACAAGGGTAT
* * * *
66621011 TTTGGTATTTTTACCCTATAAGGGTAT
1 TTTAGTAATTCTACCCTACAAGGGTAT
**
66621038 TTCGGTAATTCTACCCTACAAGGGTA-
1 TTTAGTAATTCTACCCTACAAGGGTAT
* *
66621064 TTTCGATAATTCTACCCTA-TAGTGGTAT
1 TTTAG-TAATTCTACCCTACAAG-GGTAT
*
66621092 TTTAGTAATTTTACCCTACAAGGGTAT
1 TTTAGTAATTCTACCCTACAAGGGTAT
* **
66621119 TTTAGTAATTTTA-CAAATCAAGGGTAT
1 TTTAGTAATTCTACCCTA-CAAGGGTAT
*
66621146 TTCAGTAATT
1 TTTAGTAATT
66621156 TTGCAAACTG
Statistics
Matches: 175, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
26 10 0.06
27 155 0.89
28 10 0.06
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (27 bp):
TTTAGTAATTCTACCCTACAAGGGTAT
Found at i:66621145 original size:54 final size:54
Alignment explanation
Indices: 66620930--66621291 Score: 206
Period size: 54 Copynumber: 6.7 Consensus size: 54
66620920 TTTTTTGTTG
* * * ** *
66620930 TTTAGTAATTCTACCCTACAGGGGT-TTTTCAGTAATTCTAC-CCTACAGGGGTAT
1 TTTAGTAATTTTACCCTACAAGGGTATTTT-AGTAATTTTACAAAT-CAAGGGTAT
* * * * **
66620984 TTTAGTAATTCTACCCTACAGGGGTATTTTGGTATTTTTACCCTAT-AAGGGTAT
1 TTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTA-CAAATCAAGGGTAT
** * * * **
66621038 TTCGGTAATTCTACCCTACAAGGGTA-TTTCGATAATTCTAC-CCT-ATAGTGGTAT
1 TTTAGTAATTTTACCCTACAAGGGTATTTTAG-TAATTTTACAAATCA-AG-GGTAT
66621092 TTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTACAAATCAAGGGTAT
1 TTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTACAAATCAAGGGTAT
* * ** * * * *
66621146 TTCAGTAATTTT-GCAAACTGAGGGTATTTCAATAATTTTACAAATCGAGGGTAT
1 TTTAGTAATTTTACCCTAC-AAGGGTATTTTAGTAATTTTACAAATCAAGGGTAT
* ** * * * * * *
66621200 TTCAGTAATTTTACAAT-CGACGGTA-TTTCGATAATTTTATAAATC-GGGGTTAC
1 TTTAGTAATTTTACCCTACAAGGGTATTTTAG-TAATTTTACAAATCAAGGG-TAT
** **
66621253 TTTAGTAATTTTACAAT-TGAGGGTATTTTAGTAATTTTA
1 TTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTA
66621292 GTAAACTAAA
Statistics
Matches: 251, Mismatches: 43, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
52 7 0.03
53 61 0.24
54 168 0.67
55 13 0.05
56 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (54 bp):
TTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTACAAATCAAGGGTAT
Found at i:66621156 original size:27 final size:27
Alignment explanation
Indices: 66621112--66621291 Score: 210
Period size: 27 Copynumber: 6.7 Consensus size: 27
66621102 TTACCCTACA
* *
66621112 AGGGTATTTTAGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
66621139 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
66621166 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
66621193 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
66621219 ACGGTATTTC-GATAATTTTATAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
66621246 -GGGTTACTTT-AGTAATTTTAC-AATTG
1 AGGG-TA-TTTCAGTAATTTTACAAATCG
*
66621272 AGGGTATTTTAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
66621292 GTAAACTAAA
Statistics
Matches: 133, Mismatches: 11, Indels: 19
0.82 0.07 0.12
Matches are distributed among these distances:
25 4 0.03
26 41 0.31
27 83 0.62
28 5 0.04
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:66621245 original size:53 final size:53
Alignment explanation
Indices: 66621087--66621291 Score: 225
Period size: 54 Copynumber: 3.8 Consensus size: 53
66621077 ACCCTATAGT
* ** * * * *
66621087 GGTATTTTAGTAATTTTACCCTACAAGGGTATTTTAGTAATTTTACAAATCAAG
1 GGTATTTCAGTAATTTTACAAT-CGAGGGTATTTCAATAATTTTACAAATCGAG
* *
66621141 GGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAATC-GAGGGTATTTCAATAATTTTACAAATCGAG
* * *
66621195 GGTATTTCAGTAATTTTACAATCGACGGTATTTCGATAATTTTATAAATCG-G
1 GGTATTTCAGTAATTTTACAATCGAGGGTATTTCAATAATTTTACAAATCGAG
* * *
66621247 GGTTACTTT-AGTAATTTTACAATTGAGGGTATTTTAGTAATTTTA
1 GG-TA-TTTCAGTAATTTTACAATCGAGGGTATTTCAATAATTTTA
66621292 GTAAACTAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 3 0.02
53 59 0.46
54 67 0.52
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (53 bp):
GGTATTTCAGTAATTTTACAATCGAGGGTATTTCAATAATTTTACAAATCGAG
Found at i:66623015 original size:24 final size:24
Alignment explanation
Indices: 66622960--66623015 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
66622950 GTTTTAGGCC
*
66622960 TTTTGGG-TGCAAATGTAAATGGG
1 TTTTGGGCTGCAAATGTAAATGAG
** * *
66622983 TAATAGGCTGTAAATGTAAATGAG
1 TTTTGGGCTGCAAATGTAAATGAG
66623007 TTTTGGGCT
1 TTTTGGGCT
66623016 TTGTACATGG
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.29, C:0.05, G:0.30, T:0.36
Consensus pattern (24 bp):
TTTTGGGCTGCAAATGTAAATGAG
Found at i:66623395 original size:44 final size:44
Alignment explanation
Indices: 66623346--66623493 Score: 233
Period size: 44 Copynumber: 3.4 Consensus size: 44
66623336 GCTATGTTGA
* *
66623346 TATCTTCGATCTGCTCTCTGATAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
66623390 TATCTTTGATCTGATCTCTGACAATACAGAGACGCCAAATCTAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
66623434 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATTTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
66623478 TATCTTCGATCTGCTC
1 TATCTTCGATCTGCTC
66623494 CTTGTAAATG
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 95 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:66623738 original size:220 final size:220
Alignment explanation
Indices: 66623480--66623903 Score: 686
Period size: 220 Copynumber: 1.9 Consensus size: 220
66623470 AAATTTGCTA
* * *
66623480 TCTTCGATCTGCTCCTTGTAAATGCAAGGATGCCAAATCATCTTGGATCTACCTCGATGCAAAAA
1 TCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATATACCTCAATGCAAAAA
* * *
66623545 CATCCGAAGGTTAGATCTGCTATGTCTTCATTCTGCTCTCTGTCGAATATGGAGATGCCAAATCT
66 CATCCGAAGGTTAGATCTGCTATGTCTTCAATCTGCTCACCGTCGAATATGGAGATGCCAAATCT
** * * **
66623610 GTTTCTTCGATTTGTTCTCTGACAATTTAGAGATGCCAAATCATTTTAGATTTGCTTCAGTGTAA
131 GTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAA
*
66623675 ACACGTGAAAGCCAAATCTTCTATG
196 ACACCTGAAAGCCAAATCTTCTATG
* **
66623700 TCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATATACTTCAATGTGAAAA
1 TCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATATACCTCAATGCAAAAA
*
66623765 CATCCGAAGGTTAGATCTGCTATGTCTTTAATCTGCTCACCGTCGAATATGGAGATGCCAAATCT
66 CATCCGAAGGTTAGATCTGCTATGTCTTCAATCTGCTCACCGTCGAATATGGAGATGCCAAATCT
*
66623830 GTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAA
131 GTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAA
66623895 ACACCTGAA
196 ACACCTGAA
66623904 GGTCAGATCT
Statistics
Matches: 186, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 186 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
TCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATATACCTCAATGCAAAAA
CATCCGAAGGTTAGATCTGCTATGTCTTCAATCTGCTCACCGTCGAATATGGAGATGCCAAATCT
GTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAACGTAA
ACACCTGAAAGCCAAATCTTCTATG
Found at i:66630470 original size:27 final size:27
Alignment explanation
Indices: 66630440--66630617 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66630430 ATATTGAGTC
* * * *
66630440 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
66630467 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66630494 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
66630522 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
66630549 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
66630576 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66630603 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66630618 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:66630579 original size:82 final size:81
Alignment explanation
Indices: 66630461--66630616 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66630451 TGCTATATAA
* *
66630461 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66630526 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66630543 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66630607 CACTTAGTGC
65 CACTTAGTGC
66630617 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66640808 original size:10 final size:10
Alignment explanation
Indices: 66640793--66640825 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
66640783 TAAAATAAAG
66640793 ATATTTAGAA
1 ATATTTAGAA
66640803 ATATTTAGAA
1 ATATTTAGAA
66640813 ATATTTAGAA
1 ATATTTAGAA
66640823 ATA
1 ATA
66640826 ATATAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (10 bp):
ATATTTAGAA
Found at i:66641047 original size:14 final size:14
Alignment explanation
Indices: 66641028--66641058 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
66641018 GTAAGGAATA
66641028 ATATAGCGTATAAT
1 ATATAGCGTATAAT
66641042 ATATAGCGTATAAT
1 ATATAGCGTATAAT
66641056 ATA
1 ATA
66641059 ATTTATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (14 bp):
ATATAGCGTATAAT
Found at i:66642448 original size:24 final size:24
Alignment explanation
Indices: 66642395--66642450 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
66642385 GTTTTAGGCC
*
66642395 TTTTGGG-TGCAAATGTAAACGGG
1 TTTTGGGCTGCAAATGTAAACGAG
** * *
66642418 TAATGGGCTGTAAATGTAAATGAG
1 TTTTGGGCTGCAAATGTAAACGAG
66642442 TTTTGGGCT
1 TTTTGGGCT
66642451 TTGTACATGG
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.27, C:0.07, G:0.32, T:0.34
Consensus pattern (24 bp):
TTTTGGGCTGCAAATGTAAACGAG
Found at i:66643061 original size:17 final size:18
Alignment explanation
Indices: 66643015--66643059 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
66643005 ATTTTTAAAG
*
66643015 TTTCAAAAAAATAAAATAA
1 TTTC-AAAAATTAAAATAA
66643034 TTTCAAAAATTAAAA-AA
1 TTTCAAAAATTAAAATAA
66643051 TTATCAAAA
1 TT-TCAAAA
66643060 TTGTTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 16 0.67
19 4 0.17
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (18 bp):
TTTCAAAAATTAAAATAA
Found at i:66653259 original size:65 final size:65
Alignment explanation
Indices: 66653178--66653308 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
66653168 TATCAGAGTA
66653178 AGAGATCGAAAATTCTTCTTGACCCGGATACCATGTTGAATTAATTGATAAGAGATCAATTGTTG
1 AGAGATCGAAAATTCTTCTTGACCCGGATACCATGTTGAATTAATTGATAAGAGATCAATTGTTG
66653243 AGAGATCGAAAATTCTTCTTGACCCGGATACCATGTTGAATTAATTGATAAGAGATCAATTGTTG
1 AGAGATCGAAAATTCTTCTTGACCCGGATACCATGTTGAATTAATTGATAAGAGATCAATTGTTG
66653308 A
1 A
66653309 TGATGAAATC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (65 bp):
AGAGATCGAAAATTCTTCTTGACCCGGATACCATGTTGAATTAATTGATAAGAGATCAATTGTTG
Found at i:66662912 original size:23 final size:23
Alignment explanation
Indices: 66662886--66662935 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
66662876 ACCCCGTGTA
66662886 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
66662909 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
66662932 ATGC
1 ATGC
66662936 TCAGATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:66663020 original size:27 final size:27
Alignment explanation
Indices: 66662971--66663086 Score: 92
Period size: 27 Copynumber: 4.3 Consensus size: 27
66662961 AACAAATCTA
* ** * *
66662971 TCATTTTACCTTACCCGGATATTACAG
1 TCATTTTACCCTACAGGGGTATTTCAG
* * *
66662998 TTATTTTACCCTACAGGTGTATTTCGG
1 TCATTTTACCCTACAGGGGTATTTCAG
** *
66663025 TCATTTTACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTACAGGGGTATTTCAG
*
66663052 TCATTTTACCCTA-TGAGGGTATTTC-G
1 TCATTTTACCCTACAG-GGGTATTTCAG
66663078 ATCATTTTA
1 -TCATTTTA
66663087 TCACATAAGA
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCAG
Found at i:66668158 original size:18 final size:18
Alignment explanation
Indices: 66668135--66668193 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
66668125 TAGCCCATTT
*
66668135 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
66668153 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
66668171 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
*
66668189 TAGTA
1 CAGTA
66668194 TGCAAACAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:66668600 original size:27 final size:27
Alignment explanation
Indices: 66668566--66668679 Score: 167
Period size: 27 Copynumber: 4.2 Consensus size: 27
66668556 TATTAAAGTT
**
66668566 ATTTTACCCTACAAGGGTATTTCGGTC
1 ATTTTACCCTATGAGGGTATTTCGGTC
*
66668593 ATTCTACCCTATG-GGCGTATTTCGGTC
1 ATTTTACCCTATGAGG-GTATTTCGGTC
*
66668620 ATTTTACCCTATGAGGGTATTTCGATC
1 ATTTTACCCTATGAGGGTATTTCGGTC
*
66668647 ATTTTACCCTATGAGGGTATTTCAGTC
1 ATTTTACCCTATGAGGGTATTTCGGTC
66668674 ATTTTA
1 ATTTTA
66668680 TCATATAAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 2 0.03
27 74 0.95
28 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTATGAGGGTATTTCGGTC
Found at i:66671414 original size:24 final size:25
Alignment explanation
Indices: 66671377--66671443 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 25
66671367 ACCCCATGCA
*
66671377 ATGCAACATA-ATATCATACATGG-
1 ATGCAAAATACATATCATACATGGC
66671400 ATGCAAAATACATAT-A-ACATGGC
1 ATGCAAAATACATATCATACATGGC
* *
66671423 ATGCTCAAATACA-GTCATACA
1 ATGC-AAAATACATATCATACA
66671444 CATCGTAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 6 0.17
23 15 0.42
24 12 0.33
25 3 0.08
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (25 bp):
ATGCAAAATACATATCATACATGGC
Found at i:66671519 original size:27 final size:26
Alignment explanation
Indices: 66671489--66671629 Score: 129
Period size: 27 Copynumber: 5.2 Consensus size: 26
66671479 GGTATAAAAG
*
66671489 TCATTTTACCCTACAGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
* *
66671516 TCATTCTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
* ** *
66671543 TCATTCTACTTTATGGGGGTATTTCAA
1 TCATTTTACCCTA-GGGGGTATTTCGA
* * *
66671570 ACATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTA-GGGGGTATTTCGA
* *
66671597 TTATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
66671624 TCATTT
1 TCATTT
66671630 GATCACATAA
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTAGGGGGTATTTCGA
Found at i:66671629 original size:54 final size:54
Alignment explanation
Indices: 66671489--66671629 Score: 158
Period size: 54 Copynumber: 2.6 Consensus size: 54
66671479 GGTATAAAAG
* * * *
66671489 TCATTTTACCCTA-CAGGGGTATTTCGATCATTCTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTATGA-GGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGA
* ** * * * *
66671543 TCATTCTACTTTATGGGGGTATTTCAAACATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGA
*
66671597 TTATTTTACCCTATGAGGGTATTTCGATCATTT
1 TCATTTTACCCTATGAGGGTATTTCGATCATTT
66671630 GATCACATAA
Statistics
Matches: 68, Mismatches: 18, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGA
Found at i:66671644 original size:81 final size:81
Alignment explanation
Indices: 66671490--66671644 Score: 172
Period size: 81 Copynumber: 1.9 Consensus size: 81
66671480 GTATAAAAGT
* * **
66671490 CATTTTACCCTACAGGGGTATTTCGATCATTCTACCTTATGGGGGTATTTCGATCATTCTACTTT
1 CATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTCGATCATTCTACTAC
**
66671555 ATGGGGGTATTTCAAA
66 ATAAGGGTATTTCAAA
* * * *
66671571 CATTTTACCCTA-TGAGGGTATTTCGGTTATTTTACCCTATGAGGGTATTTCGATCATT-TGA-T
1 CATTTTACCCTACAG-GGGTATTTCGATCATTCTACCCTATGAGGGTATTTCGATCATTCT-ACT
66671633 CACATAAGGGTA
64 -ACATAAGGGTA
66671645 AAATCGTCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
80 3 0.05
81 58 0.95
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.39
Consensus pattern (81 bp):
CATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTCGATCATTCTACTAC
ATAAGGGTATTTCAAA
Found at i:66672020 original size:27 final size:27
Alignment explanation
Indices: 66671624--66672019 Score: 524
Period size: 27 Copynumber: 14.7 Consensus size: 27
66671614 GGTATTTCGA
* *
66671624 TCATTTGATCACATAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
66671651 TCATTTTATCAAATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
66671678 TCATTTTATCACAAAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
66671705 TCATTTTCTCACATAAGGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
**
66671732 TCATTTTATCACGGAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* * *
66671759 CCATTTTATCACATAAGAGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
*
66671786 TCAATTTATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* * *
66671813 TCATTTTATTACATAAGGGAAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
* ** *
66671840 TCATTTTATCATATAAGGATAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
* *
66671867 TAATTTTATCACATAAAGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
66671894 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
*
66671921 TCATTTTATCACATAAGGGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
66671948 TCATTTT-TCACATAAGGGAAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
* *
66671974 TCATTTTATCACATAAGGGTAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
*
66672001 TCATTTTATCACATGAGGG
1 TCATTTTATCACATAAGGG
66672020 TTCAAGTACG
Statistics
Matches: 322, Mismatches: 46, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.07
27 299 0.93
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCG
Found at i:66672163 original size:18 final size:18
Alignment explanation
Indices: 66672123--66672164 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
66672113 CCACAATGCG
66672123 AGCCCATGTGGGCCCACA
1 AGCCCATGTGGGCCCACA
* *
66672141 TGCCCATGT-GGCCTACGA
1 AGCCCATGTGGGCCCAC-A
66672159 AGCCCA
1 AGCCCA
66672165 AAAATGGCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.14
Consensus pattern (18 bp):
AGCCCATGTGGGCCCACA
Found at i:66675601 original size:24 final size:24
Alignment explanation
Indices: 66675564--66675631 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 24
66675554 ACCCCATGCA
*
66675564 ATGCAACATA-ATATCATACATGG-
1 ATGCAAAATACATATCA-ACATGGC
66675587 ATGCAAAATACATAT-AACATGGC
1 ATGCAAAATACATATCAACATGGC
*
66675610 ATGCTCAAATACA-ATCACACAT
1 ATGC-AAAATACATATCA-ACAT
66675632 ATCGTAGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 6 0.16
23 16 0.42
24 12 0.32
25 4 0.11
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.24
Consensus pattern (24 bp):
ATGCAAAATACATATCAACATGGC
Found at i:66675816 original size:27 final size:27
Alignment explanation
Indices: 66675692--66675816 Score: 130
Period size: 27 Copynumber: 4.6 Consensus size: 27
66675682 TAAGGGGTAG
* *
66675692 GGGTATTTCGGTCATTCTACCCTATG-
1 GGGTATTTCGATCATTTTACCCTATGA
* *
66675718 GGAGTATTTC-AGTCATTCTACCCTATGG
1 GG-GTATTTCGA-TCATTTTACCCTATGA
*
66675746 GGGTATTTCAGA-CATTTTATCCTATGA
1 GGGTATTTC-GATCATTTTACCCTATGA
* *
66675773 GGGTATCTCGATGATTTTACCCTATGA
1 GGGTATTTCGATCATTTTACCCTATGA
*
66675800 GGGTATTTTGATCATTT
1 GGGTATTTCGATCATTT
66675817 GATAACATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
26 4 0.05
27 76 0.92
28 2 0.02
29 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATCATTTTACCCTATGA
Found at i:66675855 original size:22 final size:22
Alignment explanation
Indices: 66675829--66675872 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
66675819 TAACATAAGG
66675829 GCAAAATCATCATTTTATCACA
1 GCAAAATCATCATTTTATCACA
**
66675851 GCAAAATTGTCATTTTATCACA
1 GCAAAATCATCATTTTATCACA
66675873 TAAAGGCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (22 bp):
GCAAAATCATCATTTTATCACA
Found at i:66675938 original size:54 final size:54
Alignment explanation
Indices: 66675823--66675960 Score: 178
Period size: 54 Copynumber: 2.6 Consensus size: 54
66675813 ATTTGATAAC
* * *
66675823 ATAAGGGCAAAATCATCATTTTATCAC---A--GCAAAATTGTCATTTTATCAC
1 ATAAAGGCAAAATCATCATTTTATCACATAAGGGTAAAATTGTCATTTTATCAA
* *
66675872 ATAAAGGCAAAATCGTCATTTTATCACGTAAGGGTAAAATTGTCATTTTATCAA
1 ATAAAGGCAAAATCATCATTTTATCACATAAGGGTAAAATTGTCATTTTATCAA
* *
66675926 ATAAGGGTAAAATCATCATTTTATCACATAAGGGT
1 ATAAAGGCAAAATCATCATTTTATCACATAAGGGT
66675961 TCAAGTACGC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
49 25 0.33
52 1 0.01
54 50 0.66
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (54 bp):
ATAAAGGCAAAATCATCATTTTATCACATAAGGGTAAAATTGTCATTTTATCAA
Found at i:66675960 original size:27 final size:27
Alignment explanation
Indices: 66675810--66675959 Score: 157
Period size: 27 Copynumber: 5.7 Consensus size: 27
66675800 GGGTATTTTG
* *
66675810 ATCATTTGATAACATAAGGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
*
66675837 ATCATTTTATCAC---A--GCAAAATT
1 ATCATTTTATCACATAAGGGCAAAATC
* *
66675859 GTCATTTTATCACATAAAGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* * * *
66675886 GTCATTTTATCACGTAAGGGTAAAATT
1 ATCATTTTATCACATAAGGGCAAAATC
* * *
66675913 GTCATTTTATCAAATAAGGGTAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
66675940 ATCATTTTATCACATAAGGG
1 ATCATTTTATCACATAAGGG
66675960 TTCAAGTACG
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
22 19 0.18
24 1 0.01
25 1 0.01
27 83 0.80
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGCAAAATC
Found at i:66677390 original size:12 final size:12
Alignment explanation
Indices: 66677373--66677424 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
66677363 CCCTTGATTT
66677373 CCTCCTAAAATC
1 CCTCCTAAAATC
* *
66677385 CCTCCTCATATC
1 CCTCCTAAAATC
* * *
66677397 TCTCCTCAACTC
1 CCTCCTAAAATC
*
66677409 CCTCCTACAATC
1 CCTCCTAAAATC
66677421 CCTC
1 CCTC
66677425 AATGACCAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (12 bp):
CCTCCTAAAATC
Found at i:66683323 original size:47 final size:46
Alignment explanation
Indices: 66683216--66683379 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 46
66683206 GAGGCCAATA
* * * * **
66683216 CATGTCCCAGACATGTCTTACTCTGGCACTCATAATATGGTTGAAG
1 CATGTCCCAGACATGTCTTACACTAGCCCTCATAATGTGGCCGAAG
* * * *
66683262 CATGTCCCAAACATGTCTTACACTAGCCCTCGT-CTG-GATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCCCTCATAATGTG--GCCGAAG
* * *
66683308 CCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTAGCCCTCATAATGTGGCCGAAG
66683356 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
66683380 GGCGCACAAA
Statistics
Matches: 94, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 41 0.44
47 27 0.29
48 21 0.22
49 2 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCCCTCATAATGTGGCCGAAG
Found at i:66683747 original size:21 final size:21
Alignment explanation
Indices: 66683723--66683762 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
66683713 ATTCACAACT
*
66683723 TTGGTAAAATGACCATTTTCC
1 TTGGCAAAATGACCATTTTCC
66683744 TTGGCAAAATGACCATTTT
1 TTGGCAAAATGACCATTTT
66683763 ACCCCTACGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TTGGCAAAATGACCATTTTCC
Found at i:66690863 original size:46 final size:45
Alignment explanation
Indices: 66690673--66690970 Score: 160
Period size: 47 Copynumber: 6.4 Consensus size: 45
66690663 CCATGTTCTT
* * *
66690673 GACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGCATGTCCCA
1 GACAT-GTCTTACACTGGCACTCATA-ATATG-GC-GAAGCATGTCCCA
* * * * *
66690722 GACATGTCTTACACTAGCA--CA-ACTCTTAGCCAATGCATGTCCCA
1 GACATGTCTTACACTGGCACTCATAAT-ATGGCGAA-GCATGTCCCA
* * * * *
66690766 GACACGCCTTACACTGGCTATCTC-T-GTCGA-GGCCACTGCATGTCCCA
1 GACATGTCTTACACTGGC-A-CTCATAAT--ATGGCGA-AGCATGTCCCA
* *
66690813 GACATGTCTTACTCTGGCAATCATAATATGGCTGAAGCATGTCCCA
1 GACATGTCTTACACTGGCACTCATAATATGGC-GAAGCATGTCCCA
* * * * * * *
66690859 GACATGTCTTACACTAGCCCTCGT-CTGGATGTCGATGCCATGTCCTA
1 GACATGTCTTACACTGGCACTCATAAT--ATGGCGAAG-CATGTCCCA
* * *
66690906 GACATGGTATTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
1 GACAT-GTCTTACACTGGCACTCATAATATGG-CGAAGCATGTCCCA
*
66690953 GACATGTCTTACATTGGC
1 GACATGTCTTACACTGGC
66690971 GCACAAATCA
Statistics
Matches: 188, Mismatches: 42, Indels: 41
0.69 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 28 0.15
45 7 0.04
46 50 0.27
47 64 0.34
48 32 0.17
49 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
GACATGTCTTACACTGGCACTCATAATATGGCGAAGCATGTCCCA
Found at i:66692533 original size:43 final size:42
Alignment explanation
Indices: 66692435--66692554 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
66692425 TAGGATTATT
* *
66692435 GAGATTACATGTAAGACCATATCTGGGGTATGGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGCTATGGCATCGATAC
* * *
66692477 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATGGATAC
1 GAGA-TTACATGTAAGACCATATCTGGGCTA-TGGCATCGATAC
*
66692520 GAGATTACATGTAAGACCATATCT-GGATATGGCAT
1 GAGATTACATGTAAGACCATATCTGGGCTATGGCAT
66692555 TGGTACGTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
41 6 0.09
42 30 0.45
43 31 0.46
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGCTATGGCATCGATAC
Found at i:66696751 original size:43 final size:44
Alignment explanation
Indices: 66696703--66696858 Score: 210
Period size: 43 Copynumber: 3.6 Consensus size: 44
66696693 TACCGAGATG
*
66696703 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* *
66696746 TGATTACGTGTAAGACCATGTCTCGGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * *
66696789 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * *
66696832 TGATAACATGTAAAACCATATCTGGGA
1 TGATTACATGTAAGACCATGTCTGGGA
66696859 TATGGAATTG
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
42 1 0.01
43 98 0.99
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
Found at i:66701141 original size:40 final size:40
Alignment explanation
Indices: 66701097--66701285 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
66701087 GCTACTTGCT
66701097 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
66701137 CAAATGCCTTCGGGACTTAGCCCGGTTAAAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
66701177 CAAATGCCTTCGGGATTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
66701217 CAATTACCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
66701257 CAAATGCCTTCGGGACTTAGCTCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
66701286 CATCCGAATA
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:66701197 original size:80 final size:79
Alignment explanation
Indices: 66701062--66701285 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 79
66701052 CCAAACCAAG
* * * *
66701062 TACCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTA
1 TACCTTCGGGACTTAGCCCGGA-ATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTA
66701125 TAGTAACTCGCACAAA
64 TAGTAACTCGCACAAA
* * *
66701141 TGCCTTCGGGACTTAGCCCGGTTAA-AGTAACTCGCACAAATGCCTTCGGGATTTAGCCCGGTTA
1 TACCTTCGGGACTTAGCCCGG--AATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTA
*
66701205 TAGTAACTCGCACAAT
64 TAGTAACTCGCACAAA
* * *
66701221 TACCTTCGGGACTTAGCCCGGAATTGGTCACTAGCACAAATGCCTTCGGGACTTAGCTCGGTTAT
1 TACCTTCGGGACTTAGCCCGGAA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
66701286 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 14 0.11
80 108 0.86
81 1 0.01
82 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
TACCTTCGGGACTTAGCCCGGAATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
GTAACTCGCACAAA
Found at i:66709089 original size:40 final size:40
Alignment explanation
Indices: 66709045--66709193 Score: 244
Period size: 40 Copynumber: 3.7 Consensus size: 40
66709035 GCTACTTGCT
*
66709045 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
* *
66709085 CAAATGCCTTCAGGACTTACCCCGGTTAAAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
66709125 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
66709165 CAATTGCCTTCGGGACTTAGCCCGATTAT
1 CAAATGCCTTCAGGACTTAGCCCGGTTAT
66709194 CATCCGAATA
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:66714312 original size:12 final size:13
Alignment explanation
Indices: 66714290--66714318 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
66714280 AAATTAAATG
66714290 AATTAAAAAGCCA
1 AATTAAAAAGCCA
66714303 AATT-AAAAGCCA
1 AATTAAAAAGCCA
66714315 AATT
1 AATT
66714319 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:66715229 original size:43 final size:41
Alignment explanation
Indices: 66715140--66715242 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 41
66715130 TAAGATTATG
* * *
66715140 TGTAAGACCATATCTGTAGTATGGCATCGATATGAGACTTCG
1 TGTAAGACCATATCTG-GGTATGGCATCGATACGAGACTTCA
*
66715182 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGA-TTACA
1 TGTAAGACCATATCTGGG-TA-TGGCATCGATACGAGACTT-CA
66715225 TGTAAGACCATATCTGGG
1 TGTAAGACCATATCTGGG
66715243 AGATGGCGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 19 0.36
43 33 0.62
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGTATGGCATCGATACGAGACTTCA
Found at i:66724900 original size:14 final size:14
Alignment explanation
Indices: 66724881--66724910 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
66724871 ATCATGTCCT
66724881 TGATCCACACAACC
1 TGATCCACACAACC
66724895 TGATCCACACAACC
1 TGATCCACACAACC
66724909 TG
1 TG
66724911 GGCTTTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.40, G:0.10, T:0.17
Consensus pattern (14 bp):
TGATCCACACAACC
Found at i:66728959 original size:24 final size:24
Alignment explanation
Indices: 66728927--66728980 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
66728917 ACACACGCTC
66728927 GTGTCCCAGGCCGTGTTCTAGCCT
1 GTGTCCCAGGCCGTGTTCTAGCCT
66728951 GTGTCCCAGGCCGTGTTCTAGCCT
1 GTGTCCCAGGCCGTGTTCTAGCCT
66728975 GTGTCC
1 GTGTCC
66728981 TTACCCATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.33, G:0.30, T:0.30
Consensus pattern (24 bp):
GTGTCCCAGGCCGTGTTCTAGCCT
Done.